Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1323670 | XP_013445298.1 | 95.855 | 386 | 13 | 1 | 1 | 386 | 1 | 383 | 0.0 | 757 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1323670 | sp|P05100|3MG1_ECOLI | 41.111 | 180 | 102 | 2 | 198 | 375 | 2 | 179 | 2.20e-49 | 167 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1323670 | A0A072TP99 | 95.855 | 386 | 13 | 1 | 1 | 386 | 1 | 383 | 0.0 | 757 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014920 | Msa1323670 | 0.807284 | 5.448507e-50 | -8.615850e-47 |
| Msa0016670 | Msa1323670 | 0.808348 | 3.237185e-50 | -8.615850e-47 |
| Msa0022310 | Msa1323670 | 0.810549 | 1.090554e-50 | -8.615850e-47 |
| Msa0028060 | Msa1323670 | 0.807510 | 4.880094e-50 | -8.615850e-47 |
| Msa0043670 | Msa1323670 | -0.816963 | 4.218224e-52 | -8.615850e-47 |
| Msa0067360 | Msa1323670 | 0.804733 | 1.874715e-49 | -8.615850e-47 |
| Msa0101810 | Msa1323670 | -0.827753 | 1.314669e-54 | -8.615850e-47 |
| Msa0110970 | Msa1323670 | 0.810902 | 9.147368e-51 | -8.615850e-47 |
| Msa0114540 | Msa1323670 | -0.815840 | 7.520980e-52 | -8.615850e-47 |
| Msa0606160 | Msa1323670 | 0.803801 | 2.931108e-49 | -8.615850e-47 |
| Msa0608200 | Msa1323670 | 0.822747 | 2.007143e-53 | -8.615850e-47 |
| Msa0628360 | Msa1323670 | 0.813996 | 1.929274e-51 | -8.615850e-47 |
| Msa0647130 | Msa1323670 | 0.823181 | 1.590433e-53 | -8.615850e-47 |
| Msa0648520 | Msa1323670 | 0.809300 | 2.025976e-50 | -8.615850e-47 |
| Msa0660310 | Msa1323670 | 0.808311 | 3.296620e-50 | -8.615850e-47 |
| Msa0689010 | Msa1323670 | 0.809567 | 1.775530e-50 | -8.615850e-47 |
| Msa0691050 | Msa1323670 | 0.830473 | 2.879063e-55 | -8.615850e-47 |
| Msa0702340 | Msa1323670 | 0.812309 | 4.524495e-51 | -8.615850e-47 |
| Msa0702590 | Msa1323670 | 0.809340 | 1.986049e-50 | -8.615850e-47 |
| Msa0702660 | Msa1323670 | 0.809479 | 1.854641e-50 | -8.615850e-47 |
| Msa0743680 | Msa1323670 | 0.837197 | 5.989520e-57 | -8.615850e-47 |
| Msa0749460 | Msa1323670 | 0.816028 | 6.829606e-52 | -8.615850e-47 |
| Msa0754520 | Msa1323670 | 0.807857 | 4.119082e-50 | -8.615850e-47 |
| Msa0756630 | Msa1323670 | -0.810257 | 1.261178e-50 | -8.615850e-47 |
| Msa0789570 | Msa1323670 | 0.800264 | 1.563914e-48 | -8.615850e-47 |
| Msa0806300 | Msa1323670 | 0.858024 | 1.094348e-62 | -8.615850e-47 |
| Msa0833220 | Msa1323670 | 0.807852 | 4.129254e-50 | -8.615850e-47 |
| Msa0122630 | Msa1323670 | 0.809674 | 1.683938e-50 | -8.615850e-47 |
| Msa0124340 | Msa1323670 | 0.805820 | 1.109733e-49 | -8.615850e-47 |
| Msa0149620 | Msa1323670 | 0.803273 | 3.771497e-49 | -8.615850e-47 |
| Msa0172350 | Msa1323670 | 0.800329 | 1.516439e-48 | -8.615850e-47 |
| Msa0190830 | Msa1323670 | 0.803842 | 2.873767e-49 | -8.615850e-47 |
| Msa0203030 | Msa1323670 | 0.805794 | 1.124072e-49 | -8.615850e-47 |
| Msa0205840 | Msa1323670 | 0.800987 | 1.113454e-48 | -8.615850e-47 |
| Msa0220290 | Msa1323670 | -0.813097 | 3.041070e-51 | -8.615850e-47 |
| Msa1224840 | Msa1323670 | 0.806875 | 6.650918e-50 | -8.615850e-47 |
| Msa1231550 | Msa1323670 | 0.828722 | 7.674117e-55 | -8.615850e-47 |
| Msa1232710 | Msa1323670 | 0.808431 | 3.108319e-50 | -8.615850e-47 |
| Msa1242600 | Msa1323670 | 0.911314 | 6.993071e-83 | -8.615850e-47 |
| Msa1259990 | Msa1323670 | 0.800683 | 1.284396e-48 | -8.615850e-47 |
| Msa1264020 | Msa1323670 | 0.805209 | 1.490875e-49 | -8.615850e-47 |
| Msa1269580 | Msa1323670 | -0.804806 | 1.810288e-49 | -8.615850e-47 |
| Msa1284300 | Msa1323670 | 0.908283 | 2.024220e-81 | -8.615850e-47 |
| Msa1306740 | Msa1323670 | 0.806515 | 7.923659e-50 | -8.615850e-47 |
| Msa1313300 | Msa1323670 | 0.813278 | 2.775250e-51 | -8.615850e-47 |
| Msa1323670 | Msa1364470 | -0.814428 | 1.548183e-51 | -8.615850e-47 |
| Msa1323670 | Msa1371960 | 0.810489 | 1.123987e-50 | -8.615850e-47 |
| Msa1323670 | Msa1414320 | 0.803834 | 2.885562e-49 | -8.615850e-47 |
| Msa1323670 | Msa1429360 | -0.808472 | 3.045488e-50 | -8.615850e-47 |
| Msa1323670 | Msa1438740 | 0.804776 | 1.836669e-49 | -8.615850e-47 |
| Msa1323670 | Msa1440260 | -0.819135 | 1.361347e-52 | -8.615850e-47 |
| Msa0366240 | Msa1323670 | 0.804762 | 1.848783e-49 | -8.615850e-47 |
| Msa0369570 | Msa1323670 | 0.804268 | 2.343756e-49 | -8.615850e-47 |
| Msa0381240 | Msa1323670 | 0.801797 | 7.600462e-49 | -8.615850e-47 |
| Msa0381290 | Msa1323670 | 0.826386 | 2.791253e-54 | -8.615850e-47 |
| Msa0395870 | Msa1323670 | 0.804944 | 1.693543e-49 | -8.615850e-47 |
| Msa0416590 | Msa1323670 | 0.801704 | 7.941884e-49 | -8.615850e-47 |
| Msa0436280 | Msa1323670 | -0.809812 | 1.572306e-50 | -8.615850e-47 |
| Msa1007270 | Msa1323670 | 0.814474 | 1.512436e-51 | -8.615850e-47 |
| Msa1037920 | Msa1323670 | 0.809275 | 2.051307e-50 | -8.615850e-47 |
| Msa1040120 | Msa1323670 | 0.816369 | 5.729332e-52 | -8.615850e-47 |
| Msa1046300 | Msa1323670 | 0.802686 | 4.986276e-49 | -8.615850e-47 |
| Msa1048920 | Msa1323670 | 0.835443 | 1.673269e-56 | -8.615850e-47 |
| Msa1051550 | Msa1323670 | 0.810667 | 1.028725e-50 | -8.615850e-47 |
| Msa1069100 | Msa1323670 | 0.808572 | 2.899783e-50 | -8.615850e-47 |
| Msa1097640 | Msa1323670 | 0.857428 | 1.643752e-62 | -8.615850e-47 |
| Msa1100890 | Msa1323670 | 0.800970 | 1.122731e-48 | -8.615850e-47 |
| Msa1104000 | Msa1323670 | 0.809843 | 1.548552e-50 | -8.615850e-47 |
| Msa1104370 | Msa1323670 | 0.802255 | 6.119463e-49 | -8.615850e-47 |
| Msa0248970 | Msa1323670 | 0.802228 | 6.197912e-49 | -8.615850e-47 |
| Msa0251050 | Msa1323670 | 0.817121 | 3.885751e-52 | -8.615850e-47 |
| Msa0267760 | Msa1323670 | 0.801987 | 6.946730e-49 | -8.615850e-47 |
| Msa0282850 | Msa1323670 | 0.819212 | 1.307784e-52 | -8.615850e-47 |
| Msa0306300 | Msa1323670 | 0.826136 | 3.200513e-54 | -8.615850e-47 |
| Msa0311580 | Msa1323670 | 0.802554 | 5.310151e-49 | -8.615850e-47 |
| Msa1129980 | Msa1323670 | 0.807604 | 4.661657e-50 | -8.615850e-47 |
| Msa1139810 | Msa1323670 | 0.814775 | 1.297560e-51 | -8.615850e-47 |
| Msa1188630 | Msa1323670 | 0.926182 | 6.661128e-91 | -8.615850e-47 |
| Msa1212380 | Msa1323670 | 0.854657 | 1.063757e-61 | -8.615850e-47 |
| Msa1217900 | Msa1323670 | -0.826368 | 2.818217e-54 | -8.615850e-47 |
| Msa0521880 | Msa1323670 | 0.823649 | 1.236184e-53 | -8.615850e-47 |
| Msa0526710 | Msa1323670 | 0.805238 | 1.470262e-49 | -8.615850e-47 |
| Msa0571480 | Msa1323670 | 0.808396 | 3.161780e-50 | -8.615850e-47 |
| Msa0574890 | Msa1323670 | 0.835227 | 1.896572e-56 | -8.615850e-47 |
| Msa0845750 | Msa1323670 | 0.801231 | 9.926452e-49 | -8.615850e-47 |
| Msa0850960 | Msa1323670 | 0.806785 | 6.950433e-50 | -8.615850e-47 |
| Msa0863800 | Msa1323670 | 0.838456 | 2.844791e-57 | -8.615850e-47 |
| Msa0876180 | Msa1323670 | 0.809309 | 2.016327e-50 | -8.615850e-47 |
| Msa0891040 | Msa1323670 | 0.804651 | 1.950070e-49 | -8.615850e-47 |
| Msa0930780 | Msa1323670 | 0.836593 | 8.544076e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1323670 | MtrunA17_Chr8g0356301 | 95.855 | 386 | 13 | 1 | 1 | 386 | 1 | 383 | 0.0 | 757 |
| Msa1323670 | MtrunA17_Chr2g0309681 | 75.063 | 397 | 80 | 6 | 1 | 386 | 1 | 389 | 0.0 | 560 |
| Msa1323670 | MtrunA17_Chr4g0073991 | 51.064 | 188 | 90 | 1 | 197 | 382 | 147 | 334 | 5.75e-69 | 221 |
| Msa1323670 | MtrunA17_Chr4g0001371 | 49.215 | 191 | 95 | 1 | 195 | 383 | 134 | 324 | 4.26e-68 | 219 |
| Msa1323670 | MtrunA17_Chr5g0420791 | 46.354 | 192 | 101 | 1 | 196 | 385 | 110 | 301 | 2.67e-66 | 213 |
| Msa1323670 | MtrunA17_Chr8g0366071 | 47.179 | 195 | 98 | 2 | 196 | 385 | 114 | 308 | 6.04e-66 | 212 |
| Msa1323670 | MtrunA17_Chr3g0141411 | 50.265 | 189 | 91 | 2 | 198 | 383 | 128 | 316 | 1.83e-65 | 211 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1323670 | AT3G12710.1 | 68.000 | 275 | 70 | 4 | 114 | 385 | 50 | 309 | 2.05e-131 | 379 |
| Msa1323670 | AT5G44680.1 | 51.289 | 388 | 151 | 6 | 1 | 386 | 1 | 352 | 2.30e-131 | 381 |
| Msa1323670 | AT1G75090.1 | 51.596 | 188 | 89 | 1 | 198 | 383 | 119 | 306 | 2.19e-72 | 229 |
| Msa1323670 | AT1G80850.1 | 54.839 | 186 | 82 | 1 | 198 | 381 | 134 | 319 | 1.74e-71 | 227 |
| Msa1323670 | AT5G57970.1 | 52.356 | 191 | 89 | 1 | 195 | 383 | 151 | 341 | 2.69e-71 | 227 |
| Msa1323670 | AT5G57970.2 | 52.356 | 191 | 89 | 1 | 195 | 383 | 151 | 341 | 2.69e-71 | 227 |
| Msa1323670 | AT1G13635.2 | 48.980 | 196 | 98 | 1 | 192 | 385 | 109 | 304 | 7.02e-70 | 222 |
| Msa1323670 | AT1G13635.1 | 48.980 | 196 | 98 | 1 | 192 | 385 | 109 | 304 | 7.02e-70 | 222 |
| Msa1323670 | AT1G15970.1 | 50.785 | 191 | 86 | 2 | 198 | 383 | 145 | 332 | 6.20e-68 | 218 |
| Msa1323670 | AT1G15970.2 | 50.785 | 191 | 86 | 2 | 198 | 383 | 145 | 332 | 6.20e-68 | 218 |
Find 85 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAGGTCTTCCATTGATTT+TGG | 0.179487 | 8_4:+32184156 | None:intergenic |
| TTTAGTTAAAGGTGAGTTTA+AGG | 0.190916 | 8_4:-32179081 | Msa1323670:three_prime_UTR |
| TGAAGAAACGTCAGAATTTC+AGG | 0.191617 | 8_4:-32182698 | Msa1323670:intron |
| CTCTTTGTTGCTGGTGGTCT+TGG | 0.216304 | 8_4:+32183986 | None:intergenic |
| GAAATCTTTGTTAAATTTCT+TGG | 0.238097 | 8_4:+32183914 | None:intergenic |
| TTGTCTATTAGTTTGGAATA+TGG | 0.244808 | 8_4:-32182336 | Msa1323670:CDS |
| ACAAATGTTGTCTATTAGTT+TGG | 0.247258 | 8_4:-32182343 | Msa1323670:CDS |
| GACTTTAACTTTGGTGAAAT+TGG | 0.248820 | 8_4:+32184010 | None:intergenic |
| CTCTCTGAATTACCTGAATT+AGG | 0.255887 | 8_4:+32183611 | None:intergenic |
| TTCTATGCCTACTTTGGTCT+TGG | 0.263306 | 8_4:+32184213 | None:intergenic |
| GAATTTCTTCTTTCAAGATT+TGG | 0.263831 | 8_4:+32184109 | None:intergenic |
| GATGGTAGTGAAAGTGATTT+TGG | 0.282834 | 8_4:+32184070 | None:intergenic |
| ATGTCTTCACTGGAATCTTA+TGG | 0.298466 | 8_4:+32179546 | None:intergenic |
| AAAATGAAGATTGCTCATTA+TGG | 0.312266 | 8_4:-32183743 | Msa1323670:CDS |
| AACTTGTATTGTGTGGAAAT+AGG | 0.315120 | 8_4:+32179572 | None:intergenic |
| ATAGAGGAGTATAGTGATAA+TGG | 0.321928 | 8_4:+32184269 | None:intergenic |
| TCATTGACTCTCTTTGTTGC+TGG | 0.326408 | 8_4:+32183977 | None:intergenic |
| ACATGATCAGAAGAGGCTTT+AGG | 0.331121 | 8_4:-32179499 | Msa1323670:CDS |
| GGTCTTGGTGACTTTAACTT+TGG | 0.357782 | 8_4:+32184001 | None:intergenic |
| ATTTCCACACAATACAAGTT+TGG | 0.362445 | 8_4:-32179569 | Msa1323670:CDS |
| GTTCATTTGATAAATACATA+TGG | 0.363388 | 8_4:-32179613 | Msa1323670:CDS |
| AAGGTGAAATTGTTTATGTT+TGG | 0.366207 | 8_4:-32179062 | Msa1323670:three_prime_UTR |
| AGAATTTAATGCAGCAACTT+TGG | 0.368329 | 8_4:-32182382 | Msa1323670:CDS |
| TTCTCATCAGCATGACAATA+AGG | 0.369609 | 8_4:+32179385 | None:intergenic |
| ATCATGATAAGCAATATAGA+TGG | 0.377489 | 8_4:+32182921 | None:intergenic |
| AGAAGAGGCTTTAGGTTTGT+AGG | 0.383881 | 8_4:-32179491 | Msa1323670:CDS |
| TTACAAGTTGGTTGAAGAAC+AGG | 0.385259 | 8_4:+32184139 | None:intergenic |
| TGGTGGTGTTGATGAAGTTT+TGG | 0.386677 | 8_4:+32184030 | None:intergenic |
| GATTCACCAGGGAGTATTGC+TGG | 0.391119 | 8_4:-32183806 | Msa1323670:CDS |
| CTGACGTTTCTTCAAGATTG+AGG | 0.413643 | 8_4:+32182707 | None:intergenic |
| ATGTAGTAAGTGTGTGTGTT+TGG | 0.417601 | 8_4:-32179170 | Msa1323670:three_prime_UTR |
| AAAGAGAAGGTAAGAGATGA+AGG | 0.419210 | 8_4:+32184309 | None:intergenic |
| TGCTTATCATGATGAGGAAT+GGG | 0.420107 | 8_4:-32182911 | Msa1323670:CDS |
| CAGGGAGTATTGCTGGCTTA+AGG | 0.421059 | 8_4:-32183799 | Msa1323670:CDS |
| TTCATTTGATAAATACATAT+GGG | 0.421482 | 8_4:-32179612 | Msa1323670:CDS |
| AGCTTTATCACACCTAATTC+AGG | 0.433665 | 8_4:-32183623 | Msa1323670:intron |
| ACTTACTTGTCATCATGAAC+TGG | 0.454154 | 8_4:+32182883 | None:intergenic |
| GTTGGAAGTGGTGGTGATGA+TGG | 0.454983 | 8_4:+32184052 | None:intergenic |
| TCACCTGTTGCCAAAATCAA+TGG | 0.455608 | 8_4:-32184166 | Msa1323670:CDS |
| CATTTGTTTATCAGTTAAGC+TGG | 0.466390 | 8_4:+32182359 | None:intergenic |
| TTTGAAATAAGATTGCTTGA+AGG | 0.469481 | 8_4:+32183674 | None:intergenic |
| AGAGATGAAGGATGAGATGA+GGG | 0.474465 | 8_4:+32184321 | None:intergenic |
| TTACAGGTTAACAAGGACTT+TGG | 0.477182 | 8_4:-32179635 | Msa1323670:intron |
| CATTCGTTTATGCAAGCAGC+TGG | 0.483851 | 8_4:-32179455 | Msa1323670:CDS |
| TGTGCTTTCTATGCCTACTT+TGG | 0.484066 | 8_4:+32184207 | None:intergenic |
| TTGACTCTCTTTGTTGCTGG+TGG | 0.490510 | 8_4:+32183980 | None:intergenic |
| TGAAGGATGAGATGAGGGGT+TGG | 0.495544 | 8_4:+32184326 | None:intergenic |
| GAAGAGGCTTTAGGTTTGTA+GGG | 0.499476 | 8_4:-32179490 | Msa1323670:CDS |
| TTGCTTATCATGATGAGGAA+TGG | 0.509036 | 8_4:-32182912 | Msa1323670:CDS |
| AAGAGATGAAGGATGAGATG+AGG | 0.511684 | 8_4:+32184320 | None:intergenic |
| TGCTGTGTATAATATTAGAT+AGG | 0.518267 | 8_4:-32179318 | Msa1323670:three_prime_UTR |
| AGTCAAAGAGTTTGAAAGAA+GGG | 0.533649 | 8_4:-32183880 | Msa1323670:CDS |
| GTGCTCAAGTTGGATCTGAT+TGG | 0.533668 | 8_4:-32182731 | Msa1323670:CDS |
| TTTGGAACTCTGTTACAAGT+TGG | 0.544819 | 8_4:+32184127 | None:intergenic |
| GTTTATTGACAGTTTGAGTG+TGG | 0.550766 | 8_4:-32179255 | Msa1323670:three_prime_UTR |
| AAGTCAAAGAGTTTGAAAGA+AGG | 0.556152 | 8_4:-32183881 | Msa1323670:CDS |
| TTTAACTTTGGTGAAATTGG+TGG | 0.559341 | 8_4:+32184013 | None:intergenic |
| TGCAGCTCCAAGACCAAAGT+AGG | 0.560303 | 8_4:-32184220 | Msa1323670:CDS |
| ATCGACATAAGCAGAGTTCG+AGG | 0.564739 | 8_4:-32182312 | Msa1323670:CDS |
| AGGTGCATTTCAAGTGGCTG+TGG | 0.567532 | 8_4:+32179405 | None:intergenic |
| AGCAAAGACATGATCAGAAG+AGG | 0.567539 | 8_4:-32179506 | Msa1323670:CDS |
| AGTTTGAAAGAAGGGTCTTG+TGG | 0.570144 | 8_4:-32183872 | Msa1323670:CDS |
| ATGAATGATATCAAAAGAGA+AGG | 0.571721 | 8_4:+32184296 | None:intergenic |
| GCAAGTGATTAAGTGGTCAT+TGG | 0.573542 | 8_4:+32179427 | None:intergenic |
| GGCTGTGGCAAGTGATTAAG+TGG | 0.581468 | 8_4:+32179420 | None:intergenic |
| TCATTTGATAAATACATATG+GGG | 0.581577 | 8_4:-32179611 | Msa1323670:CDS |
| CTTAAGCCAGCAATACTCCC+TGG | 0.582568 | 8_4:+32183800 | None:intergenic |
| TCATGATAAGCAATATAGAT+GGG | 0.591991 | 8_4:+32182922 | None:intergenic |
| GGCAACAGGTGATGTAGCTG+TGG | 0.595305 | 8_4:+32184177 | None:intergenic |
| TGGCTTAAGGAGAGAACAGA+TGG | 0.595385 | 8_4:-32183786 | Msa1323670:CDS |
| CTATATTGCTTATCATGATG+AGG | 0.598338 | 8_4:-32182917 | Msa1323670:CDS |
| TTTCTTAGTTATGAGATGTG+AGG | 0.599222 | 8_4:-32179279 | Msa1323670:three_prime_UTR |
| TAGGTTTGTAGGGCCAACAG+TGG | 0.605848 | 8_4:-32179480 | Msa1323670:CDS |
| AATTTGATCACTGATTCACC+AGG | 0.618780 | 8_4:-32183818 | Msa1323670:CDS |
| AGATTGCTTGAAGGATCAAG+AGG | 0.629865 | 8_4:+32183683 | None:intergenic |
| TGATTAAGTGGTCATTGGTG+AGG | 0.631169 | 8_4:+32179432 | None:intergenic |
| ATGGCCAAACTTGTATTGTG+TGG | 0.631469 | 8_4:+32179565 | None:intergenic |
| GTTATATTTACAGGTTAACA+AGG | 0.634646 | 8_4:-32179642 | Msa1323670:intron |
| GAGATGAAGGATGAGATGAG+GGG | 0.635403 | 8_4:+32184322 | None:intergenic |
| ATAAACGAATGAACCACTGT+TGG | 0.637839 | 8_4:+32179467 | None:intergenic |
| ACAATAAGGTGCATTTCAAG+TGG | 0.639984 | 8_4:+32179399 | None:intergenic |
| AGGGTCTTGTGGTTCTACTG+AGG | 0.671323 | 8_4:-32183861 | Msa1323670:CDS |
| TGGCATTGCAGCATGCTCAG+AGG | 0.687303 | 8_4:-32183766 | Msa1323670:CDS |
| ATTTGATCACTGATTCACCA+GGG | 0.698236 | 8_4:-32183817 | Msa1323670:CDS |
| GCTTATCATGATGAGGAATG+GGG | 0.724849 | 8_4:-32182910 | Msa1323670:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGAAAAAATTTTAAAAAAG+AGG | - | chr8_4:32181375-32181394 | Msa1323670:intron | 10.0% |
| !!! | TGAAAAAATTTTAAAAAAGA+GGG | - | chr8_4:32181376-32181395 | Msa1323670:intron | 10.0% |
| !! | TTGAAAAAATTAAAAAAAAG+GGG | - | chr8_4:32181521-32181540 | Msa1323670:intron | 10.0% |
| !! | CTGAAAAAATTTAAAAAAAT+TGG | - | chr8_4:32181580-32181599 | Msa1323670:intron | 10.0% |
| !!! | TTTAATTTTCATATTGTAAT+TGG | + | chr8_4:32181845-32181864 | None:intergenic | 10.0% |
| !!! | TTTAATTTTTCTATTGTAAT+TGG | - | chr8_4:32182113-32182132 | Msa1323670:intron | 10.0% |
| !! | TTAAAAAATTAGAAAAAGTT+CGG | + | chr8_4:32182259-32182278 | None:intergenic | 10.0% |
| !!! | TTATTTTGTAAAAAGATAAT+CGG | - | chr8_4:32182384-32182403 | Msa1323670:CDS | 10.0% |
| !! | ATTAAAATGATTTAATGAAT+TGG | - | chr8_4:32182455-32182474 | Msa1323670:intron | 10.0% |
| !! | TGAAAAAATAAAAAAAAAGA+GGG | + | chr8_4:32182608-32182627 | None:intergenic | 10.0% |
| !! | TTGAAAAAATAAAAAAAAAG+AGG | + | chr8_4:32182609-32182628 | None:intergenic | 10.0% |
| !! | TGAAAAAATTTAAAAAAAGA+GGG | + | chr8_4:32182756-32182775 | None:intergenic | 10.0% |
| !! | TTGAAAAAATTTAAAAAAAG+AGG | + | chr8_4:32182757-32182776 | None:intergenic | 10.0% |
| !! | AAACAAAAAAATGAAAAAAA+AGG | - | chr8_4:32182776-32182795 | Msa1323670:intron | 10.0% |
| !!! | ATTCAATCAAAAATTAATTT+TGG | + | chr8_4:32184168-32184187 | None:intergenic | 10.0% |
| !!! | ATACTTTAGTTTTCTTTAAA+TGG | - | chr8_4:32179730-32179749 | Msa1323670:intron | 15.0% |
| !!! | TTTTTTTTTTTTTTTGAAGG+AGG | + | chr8_4:32180167-32180186 | None:intergenic | 15.0% |
| !! | TTGATAAAAAATATTGTCAT+AGG | + | chr8_4:32180206-32180225 | None:intergenic | 15.0% |
| !! | ATGTCTAAAAATAAAAAAGT+GGG | + | chr8_4:32180294-32180313 | None:intergenic | 15.0% |
| !! | AATGTCTAAAAATAAAAAAG+TGG | + | chr8_4:32180295-32180314 | None:intergenic | 15.0% |
| !!! | TGAAATTTAAATTCTTTTAC+AGG | - | chr8_4:32180888-32180907 | Msa1323670:intron | 15.0% |
| !! | TGAAAAAATTAAAAAAAAGG+GGG | - | chr8_4:32181522-32181541 | Msa1323670:intron | 15.0% |
| !! | ATTAAAATGATTTAATGATG+TGG | + | chr8_4:32181674-32181693 | None:intergenic | 15.0% |
| !!! | TTTTAAAAAGTGTCTTATTT+AGG | + | chr8_4:32181966-32181985 | None:intergenic | 15.0% |
| !! | AATAAGAATGAAAAAAAATC+TGG | + | chr8_4:32182666-32182685 | None:intergenic | 15.0% |
| !! | TTCATTTGATAAATACATAT+GGG | - | chr8_4:32183692-32183711 | Msa1323670:CDS | 15.0% |
| !!! | GTAAAATTGATTTTAGTTAT+TGG | - | chr8_4:32184194-32184213 | Msa1323670:CDS | 15.0% |
| !!! | GATTTTTTAAGAAAGAATAG+AGG | + | chr8_4:32179054-32179073 | None:intergenic | 20.0% |
| !! | GAAATCTTTGTTAAATTTCT+TGG | + | chr8_4:32179393-32179412 | None:intergenic | 20.0% |
| !! | AGTAAACTATTATAGTAGTT+TGG | + | chr8_4:32180115-32180134 | None:intergenic | 20.0% |
| !! | ACTATAATAGTTTACTAATG+AGG | - | chr8_4:32180119-32180138 | Msa1323670:intron | 20.0% |
| !! | AACATCATTAGTTATGATAA+TGG | - | chr8_4:32180258-32180277 | Msa1323670:intron | 20.0% |
| !! | ACATCATTAGTTATGATAAT+GGG | - | chr8_4:32180259-32180278 | Msa1323670:intron | 20.0% |
| !!! | AATATTCTTAATAGCACTTT+TGG | + | chr8_4:32182823-32182842 | None:intergenic | 20.0% |
| !! | TAAGAATGAAAACAAAAATC+TGG | - | chr8_4:32181612-32181631 | Msa1323670:intron | 20.0% |
| !!! | TTTTTTGCGAAATAAAAAAC+TGG | - | chr8_4:32181774-32181793 | Msa1323670:intron | 20.0% |
| !!! | AATTTTAGTTCAAAAGAGAT+TGG | - | chr8_4:32181899-32181918 | Msa1323670:intron | 20.0% |
| !!! | TTTTTTGCGAAATAAAAAAC+TGG | + | chr8_4:32181774-32181793 | None:intergenic | 20.0% |
| !! | TAAGAATGAAAACAAAAATC+TGG | + | chr8_4:32181612-32181631 | None:intergenic | 20.0% |
| !!! | AATATTCTTAATAGCACTTT+TGG | - | chr8_4:32182823-32182842 | Msa1323670:intron | 20.0% |
| !! | TTAATATTCTCTCTGTAAAT+TGG | - | chr8_4:32183636-32183655 | Msa1323670:CDS | 20.0% |
| !! | TTGTTAACCTGTAAATATAA+CGG | + | chr8_4:32183663-32183682 | None:intergenic | 20.0% |
| !! | GTTCATTTGATAAATACATA+TGG | - | chr8_4:32183691-32183710 | Msa1323670:CDS | 20.0% |
| !! | TCATTTGATAAATACATATG+GGG | - | chr8_4:32183693-32183712 | Msa1323670:CDS | 20.0% |
| !! | TAGATAGGAACAAAAAAAAT+TGG | - | chr8_4:32184001-32184020 | Msa1323670:CDS | 20.0% |
| !! | TAGAAAGAAGAAAAAAGTTT+AGG | - | chr8_4:32184107-32184126 | Msa1323670:CDS | 20.0% |
| ! | ATGAATGATATCAAAAGAGA+AGG | + | chr8_4:32179011-32179030 | None:intergenic | 25.0% |
| ! | GAATTTCTTCTTTCAAGATT+TGG | + | chr8_4:32179198-32179217 | None:intergenic | 25.0% |
| ! | AAAATGAAGATTGCTCATTA+TGG | - | chr8_4:32179561-32179580 | Msa1323670:CDS | 25.0% |
| !! | TTTGAAATAAGATTGCTTGA+AGG | + | chr8_4:32179633-32179652 | None:intergenic | 25.0% |
| !! | TCTTATTTCAAAAACAAGTG+AGG | - | chr8_4:32179641-32179660 | Msa1323670:intron | 25.0% |
| !! | CATCATTAGTTATGATAATG+GGG | - | chr8_4:32180260-32180279 | Msa1323670:intron | 25.0% |
| ! | TTTAATAAAAAGAGACACGT+TGG | + | chr8_4:32180357-32180376 | None:intergenic | 25.0% |
| ! | TCATGATAAGCAATATAGAT+GGG | + | chr8_4:32180385-32180404 | None:intergenic | 25.0% |
| ! | ATCATGATAAGCAATATAGA+TGG | + | chr8_4:32180386-32180405 | None:intergenic | 25.0% |
| !!! | TTTGAACTTCTAGTTTTAAG+TGG | - | chr8_4:32180551-32180570 | Msa1323670:intron | 25.0% |
| !!! | TATGTACTTTTTTCAGAATG+AGG | - | chr8_4:32180858-32180877 | Msa1323670:intron | 25.0% |
| !!! | ATGTACTTTTTTCAGAATGA+GGG | - | chr8_4:32180859-32180878 | Msa1323670:intron | 25.0% |
| ! | ACAAATGTTGTCTATTAGTT+TGG | - | chr8_4:32180961-32180980 | Msa1323670:intron | 25.0% |
| !! | TTGTCTATTAGTTTGGAATA+TGG | - | chr8_4:32180968-32180987 | Msa1323670:intron | 25.0% |
| !! | TAATGCTAATCGAATTTTAG+AGG | - | chr8_4:32181024-32181043 | Msa1323670:intron | 25.0% |
| !! | TTGTAGTTTTCAAAGATAGA+GGG | + | chr8_4:32181153-32181172 | None:intergenic | 25.0% |
| !! | TTTGTAGTTTTCAAAGATAG+AGG | + | chr8_4:32182976-32182995 | None:intergenic | 25.0% |
| ! | GAAATAAAAAACTGGAAATC+TGG | + | chr8_4:32182158-32182177 | None:intergenic | 25.0% |
| ! | CATAATATGCAAAAAAGAGA+GGG | + | chr8_4:32183051-32183070 | None:intergenic | 25.0% |
| ! | TCATAATATGCAAAAAAGAG+AGG | + | chr8_4:32183052-32183071 | None:intergenic | 25.0% |
| ! | GCATATTATGATATTATAGC+TGG | - | chr8_4:32183061-32183080 | Msa1323670:intron | 25.0% |
| ! | GAGAATATAGTTCAAAATTG+CGG | + | chr8_4:32183159-32183178 | None:intergenic | 25.0% |
| !! | TCTTTGTTATAGTTGAAGTA+AGG | + | chr8_4:32183286-32183305 | None:intergenic | 25.0% |
| ! | AATTAAAATCTCCATCTTGT+CGG | + | chr8_4:32183339-32183358 | None:intergenic | 25.0% |
| ! | AGAGATCAAACAGAATATAT+GGG | + | chr8_4:32183368-32183387 | None:intergenic | 25.0% |
| ! | TAGAGATCAAACAGAATATA+TGG | + | chr8_4:32183369-32183388 | None:intergenic | 25.0% |
| ! | AAACAAATATGAAATGTACC+TGG | - | chr8_4:32183560-32183579 | Msa1323670:intron | 25.0% |
| ! | GTTATATTTACAGGTTAACA+AGG | - | chr8_4:32183662-32183681 | Msa1323670:CDS | 25.0% |
| ! | TGCTGTGTATAATATTAGAT+AGG | - | chr8_4:32183986-32184005 | Msa1323670:CDS | 25.0% |
| !!! | ATTGGTGAGATTTTAGTTAA+AGG | - | chr8_4:32184212-32184231 | Msa1323670:CDS | 25.0% |
| ! | TTTAGTTAAAGGTGAGTTTA+AGG | - | chr8_4:32184223-32184242 | Msa1323670:CDS | 25.0% |
| ! | AAGGTGAAATTGTTTATGTT+TGG | - | chr8_4:32184242-32184261 | Msa1323670:exon | 25.0% |
| ! | ATAGAGGAGTATAGTGATAA+TGG | + | chr8_4:32179038-32179057 | None:intergenic | 30.0% |
| ! | TTTAACTTTGGTGAAATTGG+TGG | + | chr8_4:32179294-32179313 | None:intergenic | 30.0% |
| ! | GACTTTAACTTTGGTGAAAT+TGG | + | chr8_4:32179297-32179316 | None:intergenic | 30.0% |
| AAGTCAAAGAGTTTGAAAGA+AGG | - | chr8_4:32179423-32179442 | Msa1323670:CDS | 30.0% | |
| AGTCAAAGAGTTTGAAAGAA+GGG | - | chr8_4:32179424-32179443 | Msa1323670:CDS | 30.0% | |
| TATTTCAAAAACAAGTGAGG+AGG | - | chr8_4:32179644-32179663 | Msa1323670:intron | 30.0% | |
| !! | GGATTCAGACTTGTTATTTA+AGG | + | chr8_4:32179831-32179850 | None:intergenic | 30.0% |
| TATATTTGTTCGAGTAGAAC+TGG | + | chr8_4:32179852-32179871 | None:intergenic | 30.0% | |
| !! | ATTGATGCTTTAGAAATCAG+TGG | - | chr8_4:32179890-32179909 | Msa1323670:intron | 30.0% |
| !! | TTGATGCTTTAGAAATCAGT+GGG | - | chr8_4:32179891-32179910 | Msa1323670:intron | 30.0% |
| CTATATTGCTTATCATGATG+AGG | - | chr8_4:32180387-32180406 | Msa1323670:intron | 30.0% | |
| !! | TCATTGTGTTTTTGTGTGAT+GGG | + | chr8_4:32180461-32180480 | None:intergenic | 30.0% |
| !! | TTCATTGTGTTTTTGTGTGA+TGG | + | chr8_4:32180462-32180481 | None:intergenic | 30.0% |
| !!! | TGTACTTTTTTCAGAATGAG+GGG | - | chr8_4:32180860-32180879 | Msa1323670:intron | 30.0% |
| AGAATTTAATGCAGCAACTT+TGG | - | chr8_4:32180922-32180941 | Msa1323670:intron | 30.0% | |
| CATTTGTTTATCAGTTAAGC+TGG | + | chr8_4:32180948-32180967 | None:intergenic | 30.0% | |
| !!! | TTTTGGCTTAATAGCACTTT+TGG | - | chr8_4:32181096-32181115 | Msa1323670:intron | 30.0% |
| GTTTGTCAAAATTGCGATTT+CGG | + | chr8_4:32183003-32183022 | None:intergenic | 30.0% | |
| !! | ATCGCAATTTTGACAAACAT+AGG | - | chr8_4:32183005-32183024 | Msa1323670:intron | 30.0% |
| !! | TCGCAATTTTGACAAACATA+GGG | - | chr8_4:32183006-32183025 | Msa1323670:intron | 30.0% |
| !! | TTATAGCTGGTTCTAAATTG+TGG | - | chr8_4:32183074-32183093 | Msa1323670:intron | 30.0% |
| GTAGAATGTTCACTAAAAAC+AGG | + | chr8_4:32183195-32183214 | None:intergenic | 30.0% | |
| ATTAAAATCTCCATCTTGTC+GGG | + | chr8_4:32183338-32183357 | None:intergenic | 30.0% | |
| GAGATCAAACAGAATATATG+GGG | + | chr8_4:32183367-32183386 | None:intergenic | 30.0% | |
| AATTGGTCCGTTATATTTAC+AGG | - | chr8_4:32183653-32183672 | Msa1323670:CDS | 30.0% | |
| AACTTGTATTGTGTGGAAAT+AGG | + | chr8_4:32183735-32183754 | None:intergenic | 30.0% | |
| ATTTCCACACAATACAAGTT+TGG | - | chr8_4:32183735-32183754 | Msa1323670:CDS | 30.0% | |
| TTTCTTAGTTATGAGATGTG+AGG | - | chr8_4:32184025-32184044 | Msa1323670:CDS | 30.0% | |
| AAAGAGAAGGTAAGAGATGA+AGG | + | chr8_4:32178998-32179017 | None:intergenic | 35.0% | |
| !!! | AACAGGTCTTCCATTGATTT+TGG | + | chr8_4:32179151-32179170 | None:intergenic | 35.0% |
| !! | TTACAAGTTGGTTGAAGAAC+AGG | + | chr8_4:32179168-32179187 | None:intergenic | 35.0% |
| ! | TTTGGAACTCTGTTACAAGT+TGG | + | chr8_4:32179180-32179199 | None:intergenic | 35.0% |
| !! | GATGGTAGTGAAAGTGATTT+TGG | + | chr8_4:32179237-32179256 | None:intergenic | 35.0% |
| !! | AATTTGATCACTGATTCACC+AGG | - | chr8_4:32179486-32179505 | Msa1323670:CDS | 35.0% |
| !! | ATTTGATCACTGATTCACCA+GGG | - | chr8_4:32179487-32179506 | Msa1323670:CDS | 35.0% |
| ! | AGCTTTATCACACCTAATTC+AGG | - | chr8_4:32179681-32179700 | Msa1323670:intron | 35.0% |
| CTCTCTGAATTACCTGAATT+AGG | + | chr8_4:32179696-32179715 | None:intergenic | 35.0% | |
| !! | TGATGCTTTAGAAATCAGTG+GGG | - | chr8_4:32179892-32179911 | Msa1323670:intron | 35.0% |
| TTGCTTATCATGATGAGGAA+TGG | - | chr8_4:32180392-32180411 | Msa1323670:intron | 35.0% | |
| TGCTTATCATGATGAGGAAT+GGG | - | chr8_4:32180393-32180412 | Msa1323670:intron | 35.0% | |
| ACTTACTTGTCATCATGAAC+TGG | + | chr8_4:32180424-32180443 | None:intergenic | 35.0% | |
| ! | AAAAATGCTTTTGCACATGC+AGG | - | chr8_4:32180522-32180541 | Msa1323670:intron | 35.0% |
| TGAAGAAACGTCAGAATTTC+AGG | - | chr8_4:32180606-32180625 | Msa1323670:intron | 35.0% | |
| TCAGACACATCATAAAGTGT+CGG | + | chr8_4:32180662-32180681 | None:intergenic | 35.0% | |
| GTTTGACACTAACACTAACA+CGG | - | chr8_4:32180693-32180712 | Msa1323670:intron | 35.0% | |
| !! | ATCGCAATTTTGGCAAACAT+GGG | + | chr8_4:32181125-32181144 | None:intergenic | 35.0% |
| !! | AATCGCAATTTTGGCAAACA+TGG | + | chr8_4:32181126-32181145 | None:intergenic | 35.0% |
| GTTTGCCAAAATTGCGATTA+AGG | - | chr8_4:32181127-32181146 | Msa1323670:intron | 35.0% | |
| ! | GTTTGCAAAAGTTGCGATTT+TGG | + | chr8_4:32182854-32182873 | None:intergenic | 35.0% |
| ! | GCAACTTTTGCAAACATAGA+GGG | - | chr8_4:32181281-32181300 | Msa1323670:intron | 35.0% |
| ! | TCGCAACTTTTGCAAACATA+GGG | + | chr8_4:32181279-32181298 | None:intergenic | 35.0% |
| ! | ATCGCAACTTTTGCAAACAT+AGG | + | chr8_4:32181278-32181297 | None:intergenic | 35.0% |
| ! | GTTTGCAAAAGTTGCGATTT+TGG | - | chr8_4:32182854-32182873 | Msa1323670:intron | 35.0% |
| !! | CGCAATTTTGACAAACATAG+GGG | - | chr8_4:32183007-32183026 | Msa1323670:intron | 35.0% |
| !! | GCAATTTTGACAAACATAGG+GGG | - | chr8_4:32183008-32183027 | Msa1323670:intron | 35.0% |
| CAAACAGAATATATGGGGTA+AGG | + | chr8_4:32183362-32183381 | None:intergenic | 35.0% | |
| ! | ATAAGTGAGGTCGTGATTTT+AGG | + | chr8_4:32183410-32183429 | None:intergenic | 35.0% |
| ATGAAATGTACCTGGAGTAT+TGG | - | chr8_4:32183568-32183587 | Msa1323670:intron | 35.0% | |
| ! | TGAAATGTACCTGGAGTATT+GGG | - | chr8_4:32183569-32183588 | Msa1323670:intron | 35.0% |
| TTACAGGTTAACAAGGACTT+TGG | - | chr8_4:32183669-32183688 | Msa1323670:CDS | 35.0% | |
| ATGTCTTCACTGGAATCTTA+TGG | + | chr8_4:32183761-32183780 | None:intergenic | 35.0% | |
| !! | TCTGATTTTGATGTCTTCAC+TGG | + | chr8_4:32183771-32183790 | None:intergenic | 35.0% |
| ATAAACGAATGAACCACTGT+TGG | + | chr8_4:32183840-32183859 | None:intergenic | 35.0% | |
| ACAATAAGGTGCATTTCAAG+TGG | + | chr8_4:32183908-32183927 | None:intergenic | 35.0% | |
| TTCTCATCAGCATGACAATA+AGG | + | chr8_4:32183922-32183941 | None:intergenic | 35.0% | |
| GTTTATTGACAGTTTGAGTG+TGG | - | chr8_4:32184049-32184068 | Msa1323670:CDS | 35.0% | |
| ATGTAGTAAGTGTGTGTGTT+TGG | - | chr8_4:32184134-32184153 | Msa1323670:CDS | 35.0% | |
| AGAGATGAAGGATGAGATGA+GGG | + | chr8_4:32178986-32179005 | None:intergenic | 40.0% | |
| AAGAGATGAAGGATGAGATG+AGG | + | chr8_4:32178987-32179006 | None:intergenic | 40.0% | |
| TTCTATGCCTACTTTGGTCT+TGG | + | chr8_4:32179094-32179113 | None:intergenic | 40.0% | |
| TGTGCTTTCTATGCCTACTT+TGG | + | chr8_4:32179100-32179119 | None:intergenic | 40.0% | |
| TCACCTGTTGCCAAAATCAA+TGG | - | chr8_4:32179138-32179157 | Msa1323670:three_prime_UTR | 40.0% | |
| !!! | CTTCCATTGATTTTGGCAAC+AGG | + | chr8_4:32179144-32179163 | None:intergenic | 40.0% |
| ! | GGTAGTGAAAGTGATTTTGG+TGG | + | chr8_4:32179234-32179253 | None:intergenic | 40.0% |
| !!! | GATGAAGTTTTGGTTGGAAG+TGG | + | chr8_4:32179267-32179286 | None:intergenic | 40.0% |
| !!! | GGTGTTGATGAAGTTTTGGT+TGG | + | chr8_4:32179273-32179292 | None:intergenic | 40.0% |
| !!! | TGGTGGTGTTGATGAAGTTT+TGG | + | chr8_4:32179277-32179296 | None:intergenic | 40.0% |
| ! | GGTCTTGGTGACTTTAACTT+TGG | + | chr8_4:32179306-32179325 | None:intergenic | 40.0% |
| !! | TCATTGACTCTCTTTGTTGC+TGG | + | chr8_4:32179330-32179349 | None:intergenic | 40.0% |
| AGTTTGAAAGAAGGGTCTTG+TGG | - | chr8_4:32179432-32179451 | Msa1323670:CDS | 40.0% | |
| AGATTGCTTGAAGGATCAAG+AGG | + | chr8_4:32179624-32179643 | None:intergenic | 40.0% | |
| TTCAAAAACAAGTGAGGAGG+AGG | - | chr8_4:32179647-32179666 | Msa1323670:intron | 40.0% | |
| GCTTATCATGATGAGGAATG+GGG | - | chr8_4:32180394-32180413 | Msa1323670:intron | 40.0% | |
| !! | GTTTTAAGTGGTGCTCAAGT+TGG | - | chr8_4:32180563-32180582 | Msa1323670:intron | 40.0% |
| CTGACGTTTCTTCAAGATTG+AGG | + | chr8_4:32180600-32180619 | None:intergenic | 40.0% | |
| ! | GAAACGTCAGAATTTCAGGT+TGG | - | chr8_4:32180610-32180629 | Msa1323670:intron | 40.0% |
| !! | CACTAACACGGTATTGATAC+TGG | - | chr8_4:32180705-32180724 | Msa1323670:intron | 40.0% |
| ! | GACAGTGTAGGTATTGTGTT+TGG | - | chr8_4:32180781-32180800 | Msa1323670:intron | 40.0% |
| AGACCAAGTAGAGGAACAAA+AGG | + | chr8_4:32181071-32181090 | None:intergenic | 40.0% | |
| AAAAGAGAGAGACCAAGTAG+AGG | + | chr8_4:32181080-32181099 | None:intergenic | 40.0% | |
| ! | TCTACTTGGTCTCTCTCTTT+TGG | - | chr8_4:32181079-32181098 | Msa1323670:intron | 40.0% |
| !! | TCGCAATTTTGGCAAACATG+GGG | + | chr8_4:32181124-32181143 | None:intergenic | 40.0% |
| CAACGAAACCGAAACATAAG+GGG | + | chr8_4:32182949-32182968 | None:intergenic | 40.0% | |
| GCAACGAAACCGAAACATAA+GGG | + | chr8_4:32182948-32182967 | None:intergenic | 40.0% | |
| TGCAACGAAACCGAAACATA+AGG | + | chr8_4:32182947-32182966 | None:intergenic | 40.0% | |
| ! | TTTCGGTTTCGTTGCACTTT+TGG | - | chr8_4:32181187-32181206 | Msa1323670:intron | 40.0% |
| ACCAGGTCAAAATTGACCAT+GGG | + | chr8_4:32182915-32182934 | None:intergenic | 40.0% | |
| ! | CGCAACTTTTGCAAACATAG+AGG | - | chr8_4:32181280-32181299 | Msa1323670:intron | 40.0% |
| ! | GCAACTTTTGCAAACATAGG+GGG | + | chr8_4:32182849-32182868 | None:intergenic | 40.0% |
| ! | CGCAACTTTTGCAAACATAG+GGG | + | chr8_4:32181280-32181299 | None:intergenic | 40.0% |
| ACCAGGTCAAAATTGACCAT+GGG | - | chr8_4:32182915-32182934 | Msa1323670:CDS | 40.0% | |
| ! | TTTCGGTTTCGTTGCACTTT+TGG | + | chr8_4:32181187-32181206 | None:intergenic | 40.0% |
| TGCAACGAAACCGAAACATA+AGG | - | chr8_4:32182947-32182966 | Msa1323670:intron | 40.0% | |
| GCAACGAAACCGAAACATAA+GGG | - | chr8_4:32182948-32182967 | Msa1323670:intron | 40.0% | |
| CAACGAAACCGAAACATAAG+GGG | - | chr8_4:32182949-32182968 | Msa1323670:intron | 40.0% | |
| ! | AGAGGGCTTAATAGCACTTT+TGG | + | chr8_4:32183034-32183053 | None:intergenic | 40.0% |
| !! | CTGGTTCTAAATTGTGGTTG+CGG | - | chr8_4:32183080-32183099 | Msa1323670:intron | 40.0% |
| ATATACAAGTCCCGACAAGA+TGG | - | chr8_4:32183325-32183344 | Msa1323670:intron | 40.0% | |
| ATTCCACTTGTGTGACATTG+TGG | + | chr8_4:32183523-32183542 | None:intergenic | 40.0% | |
| !! | GAAATGTACCTGGAGTATTG+GGG | - | chr8_4:32183570-32183589 | Msa1323670:intron | 40.0% |
| ATGGCCAAACTTGTATTGTG+TGG | + | chr8_4:32183742-32183761 | None:intergenic | 40.0% | |
| AGCAAAGACATGATCAGAAG+AGG | - | chr8_4:32183798-32183817 | Msa1323670:CDS | 40.0% | |
| ACATGATCAGAAGAGGCTTT+AGG | - | chr8_4:32183805-32183824 | Msa1323670:CDS | 40.0% | |
| !! | AGAAGAGGCTTTAGGTTTGT+AGG | - | chr8_4:32183813-32183832 | Msa1323670:CDS | 40.0% |
| !! | GAAGAGGCTTTAGGTTTGTA+GGG | - | chr8_4:32183814-32183833 | Msa1323670:CDS | 40.0% |
| TGATTAAGTGGTCATTGGTG+AGG | + | chr8_4:32183875-32183894 | None:intergenic | 40.0% | |
| GCAAGTGATTAAGTGGTCAT+TGG | + | chr8_4:32183880-32183899 | None:intergenic | 40.0% | |
| GAGATGAAGGATGAGATGAG+GGG | + | chr8_4:32178985-32179004 | None:intergenic | 45.0% | |
| ! | CTTGGAGCTGCACATTTTGT+TGG | + | chr8_4:32179076-32179095 | None:intergenic | 45.0% |
| !!! | GAAGTTTTGGTTGGAAGTGG+TGG | + | chr8_4:32179264-32179283 | None:intergenic | 45.0% |
| TTGACTCTCTTTGTTGCTGG+TGG | + | chr8_4:32179327-32179346 | None:intergenic | 45.0% | |
| TGGCTTAAGGAGAGAACAGA+TGG | - | chr8_4:32179518-32179537 | Msa1323670:CDS | 45.0% | |
| ! | GTGTGATGGGAAAGAGAAGT+GGG | + | chr8_4:32180448-32180467 | None:intergenic | 45.0% |
| ! | TGTGTGATGGGAAAGAGAAG+TGG | + | chr8_4:32180449-32180468 | None:intergenic | 45.0% |
| !! | GTGCTCAAGTTGGATCTGAT+TGG | - | chr8_4:32180573-32180592 | Msa1323670:intron | 45.0% |
| TACACTGTCACTGAGACACA+CGG | + | chr8_4:32180770-32180789 | None:intergenic | 45.0% | |
| ATCGACATAAGCAGAGTTCG+AGG | - | chr8_4:32180992-32181011 | Msa1323670:intron | 45.0% | |
| ! | AGTAGAGGAACAAAAGGCAC+AGG | + | chr8_4:32181065-32181084 | None:intergenic | 45.0% |
| ! | GTGCCTTTTGTTCCTCTACT+TGG | - | chr8_4:32181065-32181084 | Msa1323670:intron | 45.0% |
| !! | GCAATTTTGGCAAACATGGG+GGG | + | chr8_4:32181122-32181141 | None:intergenic | 45.0% |
| !! | CGCAATTTTGGCAAACATGG+GGG | + | chr8_4:32181123-32181142 | None:intergenic | 45.0% |
| ! | GAGGGCCTTAATCGCAATTT+TGG | + | chr8_4:32181135-32181154 | None:intergenic | 45.0% |
| CAAAACCGCCCCTTATGTTT+CGG | - | chr8_4:32181170-32181189 | Msa1323670:intron | 45.0% | |
| CAGGTCAAAATTGACCATGG+GGG | + | chr8_4:32182917-32182936 | None:intergenic | 45.0% | |
| CCAGGTCAAAATTGACCATG+GGG | + | chr8_4:32182916-32182935 | None:intergenic | 45.0% | |
| GACCAGGTCAAAATTGACCA+TGG | + | chr8_4:32182914-32182933 | None:intergenic | 45.0% | |
| TGGCATCCACATCACTTATG+TGG | - | chr8_4:32181246-32181265 | Msa1323670:intron | 45.0% | |
| GGCATCCACATCACTTATGT+GGG | - | chr8_4:32181247-32181266 | Msa1323670:intron | 45.0% | |
| GCATCCACATCACTTATGTG+GGG | - | chr8_4:32181248-32181267 | Msa1323670:intron | 45.0% | |
| CATCCACATCACTTATGTGG+GGG | - | chr8_4:32181249-32181268 | Msa1323670:intron | 45.0% | |
| ATCCACATCACTTATGTGGG+GGG | - | chr8_4:32181250-32181269 | Msa1323670:intron | 45.0% | |
| GAGATTGGAAGAGCAACTTG+AGG | - | chr8_4:32181914-32181933 | Msa1323670:intron | 45.0% | |
| ATCCACATCACTTATGTGGG+GGG | + | chr8_4:32181250-32181269 | None:intergenic | 45.0% | |
| CATCCACATCACTTATGTGG+GGG | + | chr8_4:32181249-32181268 | None:intergenic | 45.0% | |
| GCATCCACATCACTTATGTG+GGG | + | chr8_4:32181248-32181267 | None:intergenic | 45.0% | |
| GGCATCCACATCACTTATGT+GGG | + | chr8_4:32181247-32181266 | None:intergenic | 45.0% | |
| TGGCATCCACATCACTTATG+TGG | + | chr8_4:32181246-32181265 | None:intergenic | 45.0% | |
| GACCAGGTCAAAATTGACCA+TGG | - | chr8_4:32182914-32182933 | Msa1323670:CDS | 45.0% | |
| CCAGGTCAAAATTGACCATG+GGG | - | chr8_4:32182916-32182935 | Msa1323670:CDS | 45.0% | |
| CAGGTCAAAATTGACCATGG+GGG | - | chr8_4:32182917-32182936 | Msa1323670:CDS | 45.0% | |
| GACCTCACTTATGTGACTTG+AGG | - | chr8_4:32183418-32183437 | Msa1323670:intron | 45.0% | |
| TGCCTCAAGTCACATAAGTG+AGG | + | chr8_4:32183423-32183442 | None:intergenic | 45.0% | |
| ATGTGACACGTGTCACATTG+TGG | + | chr8_4:32183471-32183490 | None:intergenic | 45.0% | |
| ATGTGACACGTGTCACATTG+TGG | - | chr8_4:32183471-32183490 | Msa1323670:intron | 45.0% | |
| CATTCGTTTATGCAAGCAGC+TGG | - | chr8_4:32183849-32183868 | Msa1323670:CDS | 45.0% | |
| !!! | ATTTTTTTAATTACATAAAT+AGG | - | chr8_4:32180036-32180055 | Msa1323670:intron | 5.0% |
| !!! | TTTTTTTAATTACATAAATA+GGG | - | chr8_4:32180037-32180056 | Msa1323670:intron | 5.0% |
| !!! | TTTTTTTTTTTTTTTTTTGA+AGG | + | chr8_4:32180170-32180189 | None:intergenic | 5.0% |
| !!! | TGAAAAAATTTTAAAAAAAT+TGG | - | chr8_4:32181435-32181454 | Msa1323670:intron | 5.0% |
| !!! | TTTTGAAAAAATTAAAAAAA+AGG | - | chr8_4:32181519-32181538 | Msa1323670:intron | 5.0% |
| !! | TTTGAAAAAATTAAAAAAAA+GGG | - | chr8_4:32181520-32181539 | Msa1323670:intron | 5.0% |
| !!! | TTTAGTTTAATTAAAAATTT+AGG | + | chr8_4:32182057-32182076 | None:intergenic | 5.0% |
| !! | TGAAAAAATTTAAAAAAATT+TGG | + | chr8_4:32181581-32181600 | None:intergenic | 5.0% |
| TGAAGGATGAGATGAGGGGT+TGG | + | chr8_4:32178981-32179000 | None:intergenic | 50.0% | |
| TGCAGCTCCAAGACCAAAGT+AGG | - | chr8_4:32179084-32179103 | Msa1323670:three_prime_UTR | 50.0% | |
| ! | GTTGGAAGTGGTGGTGATGA+TGG | + | chr8_4:32179255-32179274 | None:intergenic | 50.0% |
| CTCTTTGTTGCTGGTGGTCT+TGG | + | chr8_4:32179321-32179340 | None:intergenic | 50.0% | |
| ! | AGGGTCTTGTGGTTCTACTG+AGG | - | chr8_4:32179443-32179462 | Msa1323670:CDS | 50.0% |
| !! | GATTCACCAGGGAGTATTGC+TGG | - | chr8_4:32179498-32179517 | Msa1323670:CDS | 50.0% |
| CTTAAGCCAGCAATACTCCC+TGG | + | chr8_4:32179507-32179526 | None:intergenic | 50.0% | |
| !! | CAGGGAGTATTGCTGGCTTA+AGG | - | chr8_4:32179505-32179524 | Msa1323670:CDS | 50.0% |
| GTGTGTCTCAGTGACAGTGT+AGG | - | chr8_4:32180769-32180788 | Msa1323670:intron | 50.0% | |
| CGAAACCGAAACATAAGGGG+CGG | + | chr8_4:32182952-32182971 | None:intergenic | 50.0% | |
| !! | CCCCATGGTCAATTTTGACC+TGG | - | chr8_4:32181211-32181230 | Msa1323670:intron | 50.0% |
| !! | CCCCATGGTCAATTTTGACC+TGG | + | chr8_4:32181211-32181230 | None:intergenic | 50.0% |
| CGAAACCGAAACATAAGGGG+CGG | - | chr8_4:32182952-32182971 | Msa1323670:intron | 50.0% | |
| TGACACGTGTCACATTGTGG+TGG | + | chr8_4:32183474-32183493 | None:intergenic | 50.0% | |
| CACTTGTGTGACATTGTGGC+GGG | + | chr8_4:32183519-32183538 | None:intergenic | 50.0% | |
| CCACTTGTGTGACATTGTGG+CGG | + | chr8_4:32183520-32183539 | None:intergenic | 50.0% | |
| !! | AGAGAGTACCCCAATACTCC+AGG | + | chr8_4:32183581-32183600 | None:intergenic | 50.0% |
| TAGGTTTGTAGGGCCAACAG+TGG | - | chr8_4:32183824-32183843 | Msa1323670:CDS | 50.0% | |
| GGCTGTGGCAAGTGATTAAG+TGG | + | chr8_4:32183887-32183906 | None:intergenic | 50.0% | |
| ! | AGGTGCATTTCAAGTGGCTG+TGG | + | chr8_4:32183902-32183921 | None:intergenic | 50.0% |
| GGCAACAGGTGATGTAGCTG+TGG | + | chr8_4:32179130-32179149 | None:intergenic | 55.0% | |
| TGGCATTGCAGCATGCTCAG+AGG | - | chr8_4:32179538-32179557 | Msa1323670:CDS | 55.0% | |
| ATGTGGATGCCATGTCAGCG+TGG | + | chr8_4:32182892-32182911 | None:intergenic | 55.0% | |
| ATGTGGATGCCATGTCAGCG+TGG | - | chr8_4:32182892-32182911 | Msa1323670:CDS | 55.0% | |
| CCGCCACAATGTCACACAAG+TGG | - | chr8_4:32183517-32183536 | Msa1323670:intron | 55.0% | |
| ! | CGTTGCACTTTTGGCCCCCA+TGG | - | chr8_4:32181196-32181215 | Msa1323670:intron | 60.0% |
| TGACCTGGTCCACGCTGACA+TGG | - | chr8_4:32181226-32181245 | Msa1323670:intron | 60.0% | |
| ATGCCATGTCAGCGTGGACC+AGG | + | chr8_4:32182898-32182917 | None:intergenic | 60.0% | |
| GGCCCCCCACATAAGTGATG+TGG | + | chr8_4:32182875-32182894 | None:intergenic | 60.0% | |
| GGCCCCCCACATAAGTGATG+TGG | - | chr8_4:32182875-32182894 | Msa1323670:intron | 60.0% | |
| ATGCCATGTCAGCGTGGACC+AGG | - | chr8_4:32182898-32182917 | Msa1323670:CDS | 60.0% | |
| TGACCTGGTCCACGCTGACA+TGG | + | chr8_4:32181226-32181245 | None:intergenic | 60.0% | |
| ! | CGTTGCACTTTTGGCCCCCA+TGG | + | chr8_4:32181196-32181215 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 32178978 | 32184348 | 32178978 | ID=Msa1323670;Name=Msa1323670 |
| chr8_4 | mRNA | 32178978 | 32184348 | 32178978 | ID=Msa1323670-mRNA-1;Parent=Msa1323670;Name=Msa1323670-mRNA-1;_AED=0.15;_eAED=0.15;_QI=103|1|1|1|1|1|5|413|386 |
| chr8_4 | exon | 32178978 | 32179651 | 32178978 | ID=Msa1323670-mRNA-1:exon:10451;Parent=Msa1323670-mRNA-1 |
| chr8_4 | exon | 32182281 | 32182416 | 32182281 | ID=Msa1323670-mRNA-1:exon:10450;Parent=Msa1323670-mRNA-1 |
| chr8_4 | exon | 32182699 | 32182782 | 32182699 | ID=Msa1323670-mRNA-1:exon:10449;Parent=Msa1323670-mRNA-1 |
| chr8_4 | exon | 32182889 | 32182946 | 32182889 | ID=Msa1323670-mRNA-1:exon:10448;Parent=Msa1323670-mRNA-1 |
| chr8_4 | exon | 32183624 | 32184348 | 32183624 | ID=Msa1323670-mRNA-1:exon:10447;Parent=Msa1323670-mRNA-1 |
| chr8_4 | five_prime_UTR | 32184246 | 32184348 | 32184246 | ID=Msa1323670-mRNA-1:five_prime_utr;Parent=Msa1323670-mRNA-1 |
| chr8_4 | CDS | 32183624 | 32184245 | 32183624 | ID=Msa1323670-mRNA-1:cds;Parent=Msa1323670-mRNA-1 |
| chr8_4 | CDS | 32182889 | 32182946 | 32182889 | ID=Msa1323670-mRNA-1:cds;Parent=Msa1323670-mRNA-1 |
| chr8_4 | CDS | 32182699 | 32182782 | 32182699 | ID=Msa1323670-mRNA-1:cds;Parent=Msa1323670-mRNA-1 |
| chr8_4 | CDS | 32182281 | 32182416 | 32182281 | ID=Msa1323670-mRNA-1:cds;Parent=Msa1323670-mRNA-1 |
| chr8_4 | CDS | 32179391 | 32179651 | 32179391 | ID=Msa1323670-mRNA-1:cds;Parent=Msa1323670-mRNA-1 |
| chr8_4 | three_prime_UTR | 32178978 | 32179390 | 32178978 | ID=Msa1323670-mRNA-1:three_prime_utr;Parent=Msa1323670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
