Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1284300 | XP_013445298.1 | 95.078 | 386 | 16 | 1 | 1 | 386 | 1 | 383 | 0.0 | 714 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1284300 | sp|P05100|3MG1_ECOLI | 39.444 | 180 | 105 | 2 | 198 | 375 | 2 | 179 | 8.58e-48 | 164 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1284300 | A0A072TP99 | 95.078 | 386 | 16 | 1 | 1 | 386 | 1 | 383 | 0.0 | 714 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016670 | Msa1284300 | 0.805535 | 1.273547e-49 | -8.615850e-47 |
| Msa0028060 | Msa1284300 | 0.827666 | 1.379381e-54 | -8.615850e-47 |
| Msa0032840 | Msa1284300 | -0.804063 | 2.586167e-49 | -8.615850e-47 |
| Msa0036430 | Msa1284300 | 0.812472 | 4.168537e-51 | -8.615850e-47 |
| Msa0043670 | Msa1284300 | -0.807746 | 4.347726e-50 | -8.615850e-47 |
| Msa0044020 | Msa1284300 | 0.813382 | 2.632573e-51 | -8.615850e-47 |
| Msa0090590 | Msa1284300 | 0.806469 | 8.102921e-50 | -8.615850e-47 |
| Msa0095380 | Msa1284300 | 0.804255 | 2.358015e-49 | -8.615850e-47 |
| Msa0096670 | Msa1284300 | 0.821684 | 3.543146e-53 | -8.615850e-47 |
| Msa0105420 | Msa1284300 | 0.802415 | 5.672212e-49 | -8.615850e-47 |
| Msa0109950 | Msa1284300 | 0.806974 | 6.338692e-50 | -8.615850e-47 |
| Msa0110970 | Msa1284300 | 0.807121 | 5.899913e-50 | -8.615850e-47 |
| Msa0114540 | Msa1284300 | -0.829467 | 5.063871e-55 | -8.615850e-47 |
| Msa0604360 | Msa1284300 | 0.810850 | 9.391139e-51 | -8.615850e-47 |
| Msa0606160 | Msa1284300 | 0.828293 | 9.745166e-55 | -8.615850e-47 |
| Msa0608200 | Msa1284300 | 0.809181 | 2.148146e-50 | -8.615850e-47 |
| Msa0647130 | Msa1284300 | 0.837263 | 5.762548e-57 | -8.615850e-47 |
| Msa0648520 | Msa1284300 | 0.804487 | 2.109832e-49 | -8.615850e-47 |
| Msa0691050 | Msa1284300 | 0.817628 | 2.988174e-52 | -8.615850e-47 |
| Msa0702340 | Msa1284300 | 0.825591 | 4.312272e-54 | -8.615850e-47 |
| Msa0702590 | Msa1284300 | 0.823064 | 1.693752e-53 | -8.615850e-47 |
| Msa0702660 | Msa1284300 | 0.825677 | 4.115266e-54 | -8.615850e-47 |
| Msa0743200 | Msa1284300 | 0.801277 | 9.714959e-49 | -8.615850e-47 |
| Msa0743680 | Msa1284300 | 0.826449 | 2.696965e-54 | -8.615850e-47 |
| Msa0749460 | Msa1284300 | 0.803927 | 2.760218e-49 | -8.615850e-47 |
| Msa0754720 | Msa1284300 | -0.806088 | 9.746506e-50 | -8.615850e-47 |
| Msa0756630 | Msa1284300 | -0.814084 | 1.844453e-51 | -8.615850e-47 |
| Msa0759030 | Msa1284300 | 0.809910 | 1.497663e-50 | -8.615850e-47 |
| Msa0760380 | Msa1284300 | 0.815354 | 9.650294e-52 | -8.615850e-47 |
| Msa0784620 | Msa1284300 | 0.808957 | 2.399009e-50 | -8.615850e-47 |
| Msa0806300 | Msa1284300 | 0.834961 | 2.213700e-56 | -8.615850e-47 |
| Msa0822990 | Msa1284300 | 0.807869 | 4.093525e-50 | -8.615850e-47 |
| Msa0825020 | Msa1284300 | 0.809507 | 1.828413e-50 | -8.615850e-47 |
| Msa0124340 | Msa1284300 | 0.826401 | 2.768322e-54 | -8.615850e-47 |
| Msa0142470 | Msa1284300 | 0.801539 | 8.585856e-49 | -8.615850e-47 |
| Msa0149620 | Msa1284300 | 0.818967 | 1.486652e-52 | -8.615850e-47 |
| Msa0168250 | Msa1284300 | 0.801183 | 1.015543e-48 | -8.615850e-47 |
| Msa0172350 | Msa1284300 | 0.817700 | 2.878798e-52 | -8.615850e-47 |
| Msa0183830 | Msa1284300 | 0.800188 | 1.620587e-48 | -8.615850e-47 |
| Msa0189950 | Msa1284300 | 0.810237 | 1.273924e-50 | -8.615850e-47 |
| Msa0222920 | Msa1284300 | 0.825762 | 3.927161e-54 | -8.615850e-47 |
| Msa0230550 | Msa1284300 | -0.805084 | 1.583180e-49 | -8.615850e-47 |
| Msa1224840 | Msa1284300 | 0.819387 | 1.193197e-52 | -8.615850e-47 |
| Msa1242600 | Msa1284300 | 0.883813 | 3.263668e-71 | -8.615850e-47 |
| Msa1265070 | Msa1284300 | 0.810741 | 9.915034e-51 | -8.615850e-47 |
| Msa1284300 | Msa1318120 | 0.801789 | 7.629894e-49 | -8.615850e-47 |
| Msa1284300 | Msa1323670 | 0.908283 | 2.024220e-81 | -8.615850e-47 |
| Msa1284300 | Msa1364470 | -0.803709 | 3.063435e-49 | -8.615850e-47 |
| Msa1284300 | Msa1371960 | 0.803969 | 2.704212e-49 | -8.615850e-47 |
| Msa1284300 | Msa1390310 | 0.806416 | 8.314823e-50 | -8.615850e-47 |
| Msa1284300 | Msa1414320 | 0.830228 | 3.305354e-55 | -8.615850e-47 |
| Msa1284300 | Msa1440260 | -0.813985 | 1.940092e-51 | -8.615850e-47 |
| Msa0369570 | Msa1284300 | 0.819312 | 1.240653e-52 | -8.615850e-47 |
| Msa0393680 | Msa1284300 | 0.814894 | 1.221210e-51 | -8.615850e-47 |
| Msa0413930 | Msa1284300 | 0.800700 | 1.274571e-48 | -8.615850e-47 |
| Msa0423360 | Msa1284300 | -0.821980 | 3.024666e-53 | -8.615850e-47 |
| Msa0436280 | Msa1284300 | -0.801911 | 7.201516e-49 | -8.615850e-47 |
| Msa0480320 | Msa1284300 | 0.807852 | 4.128177e-50 | -8.615850e-47 |
| Msa1018050 | Msa1284300 | 0.802473 | 5.518413e-49 | -8.615850e-47 |
| Msa1019020 | Msa1284300 | 0.802703 | 4.947220e-49 | -8.615850e-47 |
| Msa1037920 | Msa1284300 | 0.818853 | 1.578129e-52 | -8.615850e-47 |
| Msa1040120 | Msa1284300 | 0.835272 | 1.847710e-56 | -8.615850e-47 |
| Msa1048920 | Msa1284300 | 0.807848 | 4.136680e-50 | -8.615850e-47 |
| Msa1097640 | Msa1284300 | 0.854938 | 8.818340e-62 | -8.615850e-47 |
| Msa1104000 | Msa1284300 | 0.805313 | 1.418148e-49 | -8.615850e-47 |
| Msa0246690 | Msa1284300 | 0.803197 | 3.909872e-49 | -8.615850e-47 |
| Msa0259560 | Msa1284300 | 0.800683 | 1.284898e-48 | -8.615850e-47 |
| Msa0264350 | Msa1284300 | 0.821382 | 4.159452e-53 | -8.615850e-47 |
| Msa0267760 | Msa1284300 | 0.821024 | 5.029365e-53 | -8.615850e-47 |
| Msa0282850 | Msa1284300 | 0.820483 | 6.696521e-53 | -8.615850e-47 |
| Msa0302450 | Msa1284300 | 0.811940 | 5.444624e-51 | -8.615850e-47 |
| Msa0306300 | Msa1284300 | 0.815115 | 1.090697e-51 | -8.615850e-47 |
| Msa1129980 | Msa1284300 | 0.800872 | 1.175643e-48 | -8.615850e-47 |
| Msa1139810 | Msa1284300 | 0.821254 | 4.451585e-53 | -8.615850e-47 |
| Msa1185540 | Msa1284300 | 0.807615 | 4.635452e-50 | -8.615850e-47 |
| Msa1188630 | Msa1284300 | 0.910107 | 2.710044e-82 | -8.615850e-47 |
| Msa1212380 | Msa1284300 | 0.834976 | 2.194368e-56 | -8.615850e-47 |
| Msa1217900 | Msa1284300 | -0.825208 | 5.313246e-54 | -8.615850e-47 |
| Msa0521880 | Msa1284300 | 0.815730 | 7.960434e-52 | -8.615850e-47 |
| Msa0526710 | Msa1284300 | 0.823230 | 1.548978e-53 | -8.615850e-47 |
| Msa0540870 | Msa1284300 | 0.802538 | 5.350787e-49 | -8.615850e-47 |
| Msa0541860 | Msa1284300 | 0.801086 | 1.062926e-48 | -8.615850e-47 |
| Msa0574890 | Msa1284300 | 0.808769 | 2.632187e-50 | -8.615850e-47 |
| Msa0845750 | Msa1284300 | 0.803084 | 4.126765e-49 | -8.615850e-47 |
| Msa0863370 | Msa1284300 | 0.807298 | 5.412994e-50 | -8.615850e-47 |
| Msa0863800 | Msa1284300 | 0.827202 | 1.781650e-54 | -8.615850e-47 |
| Msa0881480 | Msa1284300 | 0.808931 | 2.429546e-50 | -8.615850e-47 |
| Msa0891040 | Msa1284300 | 0.812149 | 4.903181e-51 | -8.615850e-47 |
| Msa0930780 | Msa1284300 | 0.841958 | 3.464681e-58 | -8.615850e-47 |
| Msa0937670 | Msa1284300 | 0.812235 | 4.695476e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1284300 | MtrunA17_Chr8g0356301 | 95.078 | 386 | 16 | 1 | 1 | 386 | 1 | 383 | 0.0 | 714 |
| Msa1284300 | MtrunA17_Chr2g0309681 | 74.559 | 397 | 82 | 6 | 1 | 386 | 1 | 389 | 0.0 | 558 |
| Msa1284300 | MtrunA17_Chr4g0073991 | 50.532 | 188 | 91 | 1 | 197 | 382 | 147 | 334 | 1.40e-68 | 221 |
| Msa1284300 | MtrunA17_Chr4g0001371 | 48.168 | 191 | 97 | 1 | 195 | 383 | 134 | 324 | 1.99e-67 | 217 |
| Msa1284300 | MtrunA17_Chr8g0366071 | 47.692 | 195 | 97 | 2 | 196 | 385 | 114 | 308 | 3.24e-66 | 213 |
| Msa1284300 | MtrunA17_Chr3g0141411 | 50.265 | 189 | 91 | 2 | 198 | 383 | 128 | 316 | 1.51e-65 | 211 |
| Msa1284300 | MtrunA17_Chr5g0420791 | 45.312 | 192 | 103 | 1 | 196 | 385 | 110 | 301 | 1.79e-65 | 210 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1284300 | AT3G12710.1 | 69.091 | 275 | 67 | 5 | 114 | 385 | 50 | 309 | 2.17e-132 | 382 |
| Msa1284300 | AT5G44680.1 | 51.804 | 388 | 149 | 6 | 1 | 386 | 1 | 352 | 7.22e-131 | 379 |
| Msa1284300 | AT1G75090.1 | 52.128 | 188 | 88 | 1 | 198 | 383 | 119 | 306 | 6.99e-73 | 231 |
| Msa1284300 | AT1G80850.1 | 53.763 | 186 | 84 | 1 | 198 | 381 | 134 | 319 | 1.26e-70 | 224 |
| Msa1284300 | AT5G57970.1 | 51.309 | 191 | 91 | 1 | 195 | 383 | 151 | 341 | 1.71e-70 | 225 |
| Msa1284300 | AT5G57970.2 | 51.309 | 191 | 91 | 1 | 195 | 383 | 151 | 341 | 1.71e-70 | 225 |
| Msa1284300 | AT1G13635.2 | 49.490 | 196 | 97 | 1 | 192 | 385 | 109 | 304 | 7.65e-70 | 222 |
| Msa1284300 | AT1G13635.1 | 49.490 | 196 | 97 | 1 | 192 | 385 | 109 | 304 | 7.65e-70 | 222 |
| Msa1284300 | AT1G15970.1 | 50.785 | 191 | 86 | 2 | 198 | 383 | 145 | 332 | 1.27e-67 | 218 |
| Msa1284300 | AT1G15970.2 | 50.785 | 191 | 86 | 2 | 198 | 383 | 145 | 332 | 1.27e-67 | 218 |
Find 85 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAGGTCTTCCATTGATTT+TGG | 0.179487 | 8_3:-26449752 | None:intergenic |
| TTTAGTTAAAGGTGAGTTTA+AGG | 0.190916 | 8_3:+26452956 | Msa1284300:three_prime_UTR |
| TGAAGAAACGTCAAGATTTC+AGG | 0.211800 | 8_3:+26451286 | Msa1284300:CDS |
| GAAATCTTTGTTAAATTTCT+TGG | 0.238097 | 8_3:-26449994 | None:intergenic |
| TTGTCTATTAGTTTGGAATA+TGG | 0.244808 | 8_3:+26451630 | Msa1284300:CDS |
| ACAAATGTTGTCTATTAGTT+TGG | 0.247258 | 8_3:+26451623 | Msa1284300:CDS |
| GACTTTAACTTTGGTGAAAT+TGG | 0.248820 | 8_3:-26449898 | None:intergenic |
| TTCTATGCCTACTTTGGTCT+TGG | 0.263306 | 8_3:-26449695 | None:intergenic |
| GAATTTCTTCTTTCAAGATT+TGG | 0.263831 | 8_3:-26449799 | None:intergenic |
| CTCTTTGTTGCTGATGGTCT+TGG | 0.278083 | 8_3:-26449922 | None:intergenic |
| GATGGTAGTGAAAGTGATTT+TGG | 0.282834 | 8_3:-26449838 | None:intergenic |
| ATGTCTTCACTGGAATCTTA+TGG | 0.298466 | 8_3:-26452490 | None:intergenic |
| AAAATGAAGATTGCTCATTA+TGG | 0.312266 | 8_3:+26450165 | Msa1284300:CDS |
| AACTTGTATTGTGTGGAAAT+AGG | 0.315120 | 8_3:-26452464 | None:intergenic |
| ATAGAGGAGTATAGTGATAA+TGG | 0.321928 | 8_3:-26449639 | None:intergenic |
| GGTCTTGGTGACTTTAACTT+TGG | 0.330900 | 8_3:-26449907 | None:intergenic |
| ACATGATCAGAAGAGGCTTT+AGG | 0.331121 | 8_3:+26452537 | Msa1284300:CDS |
| CTCTCTGAATTACCTGAATT+AGG | 0.352616 | 8_3:-26450297 | None:intergenic |
| ATTTCCACACAATACAAGTT+TGG | 0.362445 | 8_3:+26452467 | Msa1284300:CDS |
| AAGGTGAAATTGTTTATGTT+TGG | 0.366207 | 8_3:+26452975 | Msa1284300:three_prime_UTR |
| AGAATTTAATGCAGCAACTT+TGG | 0.368329 | 8_3:+26451584 | Msa1284300:CDS |
| TTCTCATCAGCATGACAATA+AGG | 0.369609 | 8_3:-26452651 | None:intergenic |
| GTTCATTTGACAAATACATA+TGG | 0.370420 | 8_3:+26452423 | Msa1284300:CDS |
| ATCATGATAAGCAACATAGA+TGG | 0.373487 | 8_3:-26451055 | None:intergenic |
| AGAAGAGGCTTTAGGTTTGT+AGG | 0.383881 | 8_3:+26452545 | Msa1284300:CDS |
| TTACAAGTTGGTTGAAGAAC+AGG | 0.385259 | 8_3:-26449769 | None:intergenic |
| TGGTGGTGTTGATGAAGTTT+TGG | 0.386677 | 8_3:-26449878 | None:intergenic |
| TTGACTCTCTTTGTTGCTGA+TGG | 0.389298 | 8_3:-26449928 | None:intergenic |
| GATTCACCAGGGAGTATTGC+TGG | 0.391119 | 8_3:+26450102 | Msa1284300:CDS |
| AGCTTTATTACACCTAATTC+AGG | 0.412359 | 8_3:+26450285 | Msa1284300:CDS |
| ATGTAGTAAGTGTGTGTGTT+TGG | 0.417601 | 8_3:+26452867 | Msa1284300:three_prime_UTR |
| AAAGAGAAGGTAAGAGATGA+AGG | 0.419210 | 8_3:-26449599 | None:intergenic |
| TTCATTTGACAAATACATAT+GGG | 0.428513 | 8_3:+26452424 | Msa1284300:CDS |
| ATCGACATAAGCAGAGTTAG+AGG | 0.431587 | 8_3:+26451654 | Msa1284300:CDS |
| TTGACGTTTCTTCAAGATTG+AGG | 0.446483 | 8_3:-26451277 | None:intergenic |
| GTTGGAAGTGGTGGTGATGA+TGG | 0.454983 | 8_3:-26449856 | None:intergenic |
| TCACCTGTTGCCAAAATCAA+TGG | 0.455608 | 8_3:+26449742 | Msa1284300:CDS |
| TTTGAAATAAGATTGTTTGA+AGG | 0.459190 | 8_3:-26450234 | None:intergenic |
| TGCTTATCATGATGAGGAAT+GGG | 0.463202 | 8_3:+26451065 | Msa1284300:CDS |
| CATTTGTTTATCAGTTAAGC+TGG | 0.466390 | 8_3:-26451607 | None:intergenic |
| ACTTACTGGTCATCATGAAC+TGG | 0.467634 | 8_3:-26451093 | None:intergenic |
| TGTGCTTTCTATGCCTACTT+TGG | 0.468054 | 8_3:-26449701 | None:intergenic |
| AGAGATGAAGGATGAGATGA+GGG | 0.474465 | 8_3:-26449587 | None:intergenic |
| TTACAGGTTAACAAGGACTT+TGG | 0.477182 | 8_3:+26452401 | Msa1284300:intron |
| CATTCGTTTATGCAAGCAGC+TGG | 0.483851 | 8_3:+26452581 | Msa1284300:CDS |
| TGAAGGATGAGATGAGGGGT+TGG | 0.495544 | 8_3:-26449582 | None:intergenic |
| GAAGAGGCTTTAGGTTTGTA+GGG | 0.499476 | 8_3:+26452546 | Msa1284300:CDS |
| AAGAGATGAAGGATGAGATG+AGG | 0.511684 | 8_3:-26449588 | None:intergenic |
| TGCTGTGTATAATATTAGAT+AGG | 0.518267 | 8_3:+26452718 | Msa1284300:three_prime_UTR |
| AGTCAAAGAGTTTGAAAGAA+GGG | 0.533649 | 8_3:+26450028 | Msa1284300:CDS |
| GTGCTCAAGTTGGATCTGAT+TGG | 0.533668 | 8_3:+26451253 | Msa1284300:CDS |
| TTTGGAACTCTGTTACAAGT+TGG | 0.544819 | 8_3:-26449781 | None:intergenic |
| AGGTGATGTAGCTGTGGCTG+TGG | 0.545571 | 8_3:-26449725 | None:intergenic |
| GTTTATTGACAGTTTGAGTG+TGG | 0.550766 | 8_3:+26452782 | Msa1284300:three_prime_UTR |
| CTCAAGCCAGCAATACTCCC+TGG | 0.554438 | 8_3:-26450108 | None:intergenic |
| TCATGATAAGCAACATAGAT+GGG | 0.555674 | 8_3:-26451054 | None:intergenic |
| AAGTCAAAGAGTTTGAAAGA+AGG | 0.556152 | 8_3:+26450027 | Msa1284300:CDS |
| TTGCTTATCATGATGAGGAA+TGG | 0.556975 | 8_3:+26451064 | Msa1284300:CDS |
| TTTAACTTTGGTGAAATTGG+TGG | 0.559341 | 8_3:-26449895 | None:intergenic |
| TGCAGCTCCAAGACCAAAGT+AGG | 0.560303 | 8_3:+26449688 | Msa1284300:CDS |
| AGGTGCATTTCAAGTGGCTG+TGG | 0.567532 | 8_3:-26452631 | None:intergenic |
| AGCAAAGACATGATCAGAAG+AGG | 0.567539 | 8_3:+26452530 | Msa1284300:CDS |
| AGTTTGAAAGAAGGGTCTTG+TGG | 0.570144 | 8_3:+26450036 | Msa1284300:CDS |
| ATGAATGATATCAAAAGAGA+AGG | 0.571721 | 8_3:-26449612 | None:intergenic |
| GCAAGTGATTAAGTGGTCAT+TGG | 0.573542 | 8_3:-26452609 | None:intergenic |
| CAGGGAGTATTGCTGGCTTG+AGG | 0.580636 | 8_3:+26450109 | Msa1284300:CDS |
| GGCTGTGGCAAGTGATTAAG+TGG | 0.581468 | 8_3:-26452616 | None:intergenic |
| TCATTTGACAAATACATATG+GGG | 0.588609 | 8_3:+26452425 | Msa1284300:CDS |
| TGGCTTGAGGAGAGAACAGA+TGG | 0.590647 | 8_3:+26450122 | Msa1284300:CDS |
| GGCAACAGGTGATGTAGCTG+TGG | 0.595305 | 8_3:-26449731 | None:intergenic |
| CTATGTTGCTTATCATGATG+AGG | 0.598749 | 8_3:+26451059 | Msa1284300:CDS |
| TTTCTTAGTTATGAGATGTG+AGG | 0.599222 | 8_3:+26452758 | Msa1284300:three_prime_UTR |
| TAGGTTTGTAGGGCCAACAG+TGG | 0.605848 | 8_3:+26452556 | Msa1284300:CDS |
| AGATTGTTTGAAGGATCAAG+AGG | 0.610434 | 8_3:-26450225 | None:intergenic |
| AATTTGATCACTGATTCACC+AGG | 0.618780 | 8_3:+26450090 | Msa1284300:CDS |
| TGATTAAGTGGTCATTGGTG+AGG | 0.631169 | 8_3:-26452604 | None:intergenic |
| ATGGCCAAACTTGTATTGTG+TGG | 0.631469 | 8_3:-26452471 | None:intergenic |
| GTTATATTTACAGGTTAACA+AGG | 0.634646 | 8_3:+26452394 | Msa1284300:intron |
| GAGATGAAGGATGAGATGAG+GGG | 0.635403 | 8_3:-26449586 | None:intergenic |
| ATAAACGAATGAACCACTGT+TGG | 0.637839 | 8_3:-26452569 | None:intergenic |
| ACAATAAGGTGCATTTCAAG+TGG | 0.639984 | 8_3:-26452637 | None:intergenic |
| AGGGTCTTGTGGTTCTACTG+AGG | 0.671323 | 8_3:+26450047 | Msa1284300:CDS |
| TGGCATTGCAGCATGCTCAG+AGG | 0.687303 | 8_3:+26450142 | Msa1284300:CDS |
| ATTTGATCACTGATTCACCA+GGG | 0.698236 | 8_3:+26450091 | Msa1284300:CDS |
| GCTTATCATGATGAGGAATG+GGG | 0.742440 | 8_3:+26451066 | Msa1284300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTCTAAAGAAAAAAAATAT+GGG | - | chr8_3:26450753-26450772 | None:intergenic | 10.0% |
| !!! | ATTTCTAAAGAAAAAAAATA+TGG | - | chr8_3:26450754-26450773 | None:intergenic | 10.0% |
| !! | ACTAAATTAAATAAGAATAT+AGG | - | chr8_3:26450786-26450805 | None:intergenic | 10.0% |
| !! | AATTTAGTAATAGAATAAAT+AGG | + | chr8_3:26450798-26450817 | Msa1284300:intron | 10.0% |
| !! | ATTTAGTAATAGAATAAATA+GGG | + | chr8_3:26450799-26450818 | Msa1284300:intron | 10.0% |
| !! | TATTATTTAATTGATAAAAG+TGG | - | chr8_3:26450897-26450916 | None:intergenic | 10.0% |
| !!! | ATTCAATCAAAAATTAATTT+TGG | - | chr8_3:26452901-26452920 | None:intergenic | 10.0% |
| !!! | CAAATTTTGTTAACTATTAT+TGG | + | chr8_3:26450335-26450354 | Msa1284300:intron | 15.0% |
| !!! | TGTGATTATTTATTTTTTGT+TGG | + | chr8_3:26450532-26450551 | Msa1284300:intron | 15.0% |
| !!! | TGAAATTTAAATTCTTTTAC+AGG | + | chr8_3:26451550-26451569 | Msa1284300:intron | 15.0% |
| !!! | GTAAAATTGATTTTAGTTAT+TGG | + | chr8_3:26452927-26452946 | Msa1284300:three_prime_UTR | 15.0% |
| !! | GAAATCTTTGTTAAATTTCT+TGG | - | chr8_3:26449997-26450016 | None:intergenic | 20.0% |
| !!! | TTTGAAATAAGATTGTTTGA+AGG | - | chr8_3:26450237-26450256 | None:intergenic | 20.0% |
| !!! | TTGTTGGAATGTATATTTTT+TGG | + | chr8_3:26450548-26450567 | Msa1284300:intron | 20.0% |
| !!! | TGTTGGAATGTATATTTTTT+GGG | + | chr8_3:26450549-26450568 | Msa1284300:intron | 20.0% |
| !! | TTAATATAGAAATCATGCAT+TGG | + | chr8_3:26450611-26450630 | Msa1284300:intron | 20.0% |
| !! | TAATATAGAAATCATGCATT+GGG | + | chr8_3:26450612-26450631 | Msa1284300:intron | 20.0% |
| !! | ATCTTGAACATAATTAGTTA+TGG | + | chr8_3:26450921-26450940 | Msa1284300:intron | 20.0% |
| !! | TGTCTAAAAATAAAAGAAGT+GGG | - | chr8_3:26450963-26450982 | None:intergenic | 20.0% |
| !! | ATGTCTAAAAATAAAAGAAG+TGG | - | chr8_3:26450964-26450983 | None:intergenic | 20.0% |
| !! | TTTAATAAAAAGAGACACAT+TGG | - | chr8_3:26451029-26451048 | None:intergenic | 20.0% |
| !! | CTTTAATAATTTACTTAGCA+CGG | + | chr8_3:26451319-26451338 | Msa1284300:intron | 20.0% |
| !! | TGTTAAATTTCATTTAGACA+AGG | - | chr8_3:26451466-26451485 | None:intergenic | 20.0% |
| !! | TTAATATTCTCTCTGTAAAT+TGG | + | chr8_3:26452368-26452387 | Msa1284300:intron | 20.0% |
| !! | TTGTTAACCTGTAAATATAA+CGG | - | chr8_3:26452395-26452414 | None:intergenic | 20.0% |
| !! | TTCATTTGACAAATACATAT+GGG | + | chr8_3:26452424-26452443 | Msa1284300:CDS | 20.0% |
| !! | AGATAGGAACAAAAAAAAAT+TGG | + | chr8_3:26452734-26452753 | Msa1284300:three_prime_UTR | 20.0% |
| !! | TAGAAAGAAGAAAAAAGTTT+AGG | + | chr8_3:26452840-26452859 | Msa1284300:three_prime_UTR | 20.0% |
| ! | ATGAATGATATCAAAAGAGA+AGG | - | chr8_3:26449615-26449634 | None:intergenic | 25.0% |
| !!! | TTTTGTTTGAGAAAGAATAG+AGG | - | chr8_3:26449658-26449677 | None:intergenic | 25.0% |
| ! | GAATTTCTTCTTTCAAGATT+TGG | - | chr8_3:26449802-26449821 | None:intergenic | 25.0% |
| ! | AAAATGAAGATTGCTCATTA+TGG | + | chr8_3:26450165-26450184 | Msa1284300:CDS | 25.0% |
| !! | TCTTATTTCAAAAACAAGTG+AGG | + | chr8_3:26450245-26450264 | Msa1284300:CDS | 25.0% |
| !! | GATTAGTTATCAGAAAAATC+AGG | - | chr8_3:26450375-26450394 | None:intergenic | 25.0% |
| !!! | CGAAGAATATATTTTTAGCT+AGG | + | chr8_3:26450400-26450419 | Msa1284300:intron | 25.0% |
| !!! | ACTCAGACTTTTTAAGTATA+TGG | - | chr8_3:26450457-26450476 | None:intergenic | 25.0% |
| ! | TTGATAAAAGTGGTTATCAT+AGG | - | chr8_3:26450887-26450906 | None:intergenic | 25.0% |
| ! | AACATAATTAGTTATGGACT+TGG | + | chr8_3:26450927-26450946 | Msa1284300:intron | 25.0% |
| ! | ACATAATTAGTTATGGACTT+GGG | + | chr8_3:26450928-26450947 | Msa1284300:intron | 25.0% |
| !!! | TTTGAACTTCTAGTTTTAAG+TGG | + | chr8_3:26451231-26451250 | Msa1284300:CDS | 25.0% |
| !! | TGTTCTAGTGTCATAAATTT+TGG | - | chr8_3:26451367-26451386 | None:intergenic | 25.0% |
| !! | ACTTATGTGTCACTAAAAAA+AGG | - | chr8_3:26451430-26451449 | None:intergenic | 25.0% |
| ! | TGACACATAAGTATTATGTT+TGG | + | chr8_3:26451438-26451457 | Msa1284300:intron | 25.0% |
| !!! | TATGTACTTTTTTCAGAATG+AGG | + | chr8_3:26451520-26451539 | Msa1284300:intron | 25.0% |
| !!! | ATGTACTTTTTTCAGAATGA+GGG | + | chr8_3:26451521-26451540 | Msa1284300:intron | 25.0% |
| ! | ACAAATGTTGTCTATTAGTT+TGG | + | chr8_3:26451623-26451642 | Msa1284300:CDS | 25.0% |
| !! | TTGTCTATTAGTTTGGAATA+TGG | + | chr8_3:26451630-26451649 | Msa1284300:CDS | 25.0% |
| ! | GCATATTATGATATTATAGC+TGG | + | chr8_3:26451764-26451783 | Msa1284300:intron | 25.0% |
| ! | AATATTCTCGTTCAAAATTG+CGG | - | chr8_3:26451862-26451881 | None:intergenic | 25.0% |
| ! | GAGAATATAGTTCAAAATTG+CGG | - | chr8_3:26451891-26451910 | None:intergenic | 25.0% |
| !! | TCTTTGTTATAGTTGAAGTA+AGG | - | chr8_3:26452018-26452037 | None:intergenic | 25.0% |
| ! | AATTAAAATCTCCATCTTGT+CGG | - | chr8_3:26452071-26452090 | None:intergenic | 25.0% |
| ! | AGAGATCAAACAGAATATAT+GGG | - | chr8_3:26452100-26452119 | None:intergenic | 25.0% |
| ! | TAGAGATCAAACAGAATATA+TGG | - | chr8_3:26452101-26452120 | None:intergenic | 25.0% |
| ! | AAACAAATATGAAATGTACC+TGG | + | chr8_3:26452292-26452311 | Msa1284300:intron | 25.0% |
| ! | GTTATATTTACAGGTTAACA+AGG | + | chr8_3:26452394-26452413 | Msa1284300:intron | 25.0% |
| ! | GTTCATTTGACAAATACATA+TGG | + | chr8_3:26452423-26452442 | Msa1284300:CDS | 25.0% |
| ! | TCATTTGACAAATACATATG+GGG | + | chr8_3:26452425-26452444 | Msa1284300:CDS | 25.0% |
| ! | TGCTGTGTATAATATTAGAT+AGG | + | chr8_3:26452718-26452737 | Msa1284300:three_prime_UTR | 25.0% |
| !!! | ATTGGTGAGATTTTAGTTAA+AGG | + | chr8_3:26452945-26452964 | Msa1284300:three_prime_UTR | 25.0% |
| ! | TTTAGTTAAAGGTGAGTTTA+AGG | + | chr8_3:26452956-26452975 | Msa1284300:three_prime_UTR | 25.0% |
| ! | AAGGTGAAATTGTTTATGTT+TGG | + | chr8_3:26452975-26452994 | Msa1284300:three_prime_UTR | 25.0% |
| ! | ATAGAGGAGTATAGTGATAA+TGG | - | chr8_3:26449642-26449661 | None:intergenic | 30.0% |
| ! | TTTAACTTTGGTGAAATTGG+TGG | - | chr8_3:26449898-26449917 | None:intergenic | 30.0% |
| ! | GACTTTAACTTTGGTGAAAT+TGG | - | chr8_3:26449901-26449920 | None:intergenic | 30.0% |
| AAGTCAAAGAGTTTGAAAGA+AGG | + | chr8_3:26450027-26450046 | Msa1284300:CDS | 30.0% | |
| AGTCAAAGAGTTTGAAAGAA+GGG | + | chr8_3:26450028-26450047 | Msa1284300:CDS | 30.0% | |
| TATTTCAAAAACAAGTGAGG+AGG | + | chr8_3:26450248-26450267 | Msa1284300:CDS | 30.0% | |
| !! | AGCTTTATTACACCTAATTC+AGG | + | chr8_3:26450285-26450304 | Msa1284300:CDS | 30.0% |
| ! | TATGGTCTAAAATTTGAGTC+TGG | - | chr8_3:26450439-26450458 | None:intergenic | 30.0% |
| ! | GATTTATTGACTGATTGATG+AGG | + | chr8_3:26450839-26450858 | Msa1284300:intron | 30.0% |
| CATAATTAGTTATGGACTTG+GGG | + | chr8_3:26450929-26450948 | Msa1284300:intron | 30.0% | |
| TCATGATAAGCAACATAGAT+GGG | - | chr8_3:26451057-26451076 | None:intergenic | 30.0% | |
| ATCATGATAAGCAACATAGA+TGG | - | chr8_3:26451058-26451077 | None:intergenic | 30.0% | |
| !!! | TGTACTTTTTTCAGAATGAG+GGG | + | chr8_3:26451522-26451541 | Msa1284300:intron | 30.0% |
| AGAATTTAATGCAGCAACTT+TGG | + | chr8_3:26451584-26451603 | Msa1284300:CDS | 30.0% | |
| CATTTGTTTATCAGTTAAGC+TGG | - | chr8_3:26451610-26451629 | None:intergenic | 30.0% | |
| ! | TAACGCTAATCGAATTTTAG+AGG | + | chr8_3:26451686-26451705 | Msa1284300:CDS | 30.0% |
| !! | TTATAGCTGGTTCTAAATTG+TGG | + | chr8_3:26451777-26451796 | Msa1284300:intron | 30.0% |
| GTAGAATGTTCACTAAAAAC+AGG | - | chr8_3:26451927-26451946 | None:intergenic | 30.0% | |
| ATTAAAATCTCCATCTTGTC+GGG | - | chr8_3:26452070-26452089 | None:intergenic | 30.0% | |
| GAGATCAAACAGAATATATG+GGG | - | chr8_3:26452099-26452118 | None:intergenic | 30.0% | |
| AATTGGTCCGTTATATTTAC+AGG | + | chr8_3:26452385-26452404 | Msa1284300:intron | 30.0% | |
| AACTTGTATTGTGTGGAAAT+AGG | - | chr8_3:26452467-26452486 | None:intergenic | 30.0% | |
| ATTTCCACACAATACAAGTT+TGG | + | chr8_3:26452467-26452486 | Msa1284300:CDS | 30.0% | |
| TTTCTTAGTTATGAGATGTG+AGG | + | chr8_3:26452758-26452777 | Msa1284300:three_prime_UTR | 30.0% | |
| AAAGAGAAGGTAAGAGATGA+AGG | - | chr8_3:26449602-26449621 | None:intergenic | 35.0% | |
| !!! | AACAGGTCTTCCATTGATTT+TGG | - | chr8_3:26449755-26449774 | None:intergenic | 35.0% |
| !! | TTACAAGTTGGTTGAAGAAC+AGG | - | chr8_3:26449772-26449791 | None:intergenic | 35.0% |
| ! | TTTGGAACTCTGTTACAAGT+TGG | - | chr8_3:26449784-26449803 | None:intergenic | 35.0% |
| !! | GATGGTAGTGAAAGTGATTT+TGG | - | chr8_3:26449841-26449860 | None:intergenic | 35.0% |
| !! | AATTTGATCACTGATTCACC+AGG | + | chr8_3:26450090-26450109 | Msa1284300:CDS | 35.0% |
| !! | ATTTGATCACTGATTCACCA+GGG | + | chr8_3:26450091-26450110 | Msa1284300:CDS | 35.0% |
| AGATTGTTTGAAGGATCAAG+AGG | - | chr8_3:26450228-26450247 | None:intergenic | 35.0% | |
| CTCTCTGAATTACCTGAATT+AGG | - | chr8_3:26450300-26450319 | None:intergenic | 35.0% | |
| CTTCTTAACCATTGTCCTTA+GGG | - | chr8_3:26450590-26450609 | None:intergenic | 35.0% | |
| TCTTCTTAACCATTGTCCTT+AGG | - | chr8_3:26450591-26450610 | None:intergenic | 35.0% | |
| ! | CTATGTTGCTTATCATGATG+AGG | + | chr8_3:26451059-26451078 | Msa1284300:CDS | 35.0% |
| TTGCTTATCATGATGAGGAA+TGG | + | chr8_3:26451064-26451083 | Msa1284300:CDS | 35.0% | |
| TGCTTATCATGATGAGGAAT+GGG | + | chr8_3:26451065-26451084 | Msa1284300:CDS | 35.0% | |
| AAAGAAAAGTGGGAACTTAC+TGG | - | chr8_3:26451110-26451129 | None:intergenic | 35.0% | |
| ! | AAAAATGCTTTTGCACATGC+AGG | + | chr8_3:26451202-26451221 | Msa1284300:intron | 35.0% |
| TTGACGTTTCTTCAAGATTG+AGG | - | chr8_3:26451280-26451299 | None:intergenic | 35.0% | |
| TGAAGAAACGTCAAGATTTC+AGG | + | chr8_3:26451286-26451305 | Msa1284300:CDS | 35.0% | |
| ATGAAATGTACCTGGAGTAT+TGG | + | chr8_3:26452300-26452319 | Msa1284300:intron | 35.0% | |
| ! | TGAAATGTACCTGGAGTATT+GGG | + | chr8_3:26452301-26452320 | Msa1284300:intron | 35.0% |
| TTACAGGTTAACAAGGACTT+TGG | + | chr8_3:26452401-26452420 | Msa1284300:intron | 35.0% | |
| ATGTCTTCACTGGAATCTTA+TGG | - | chr8_3:26452493-26452512 | None:intergenic | 35.0% | |
| !! | TCTGATTTTGATGTCTTCAC+TGG | - | chr8_3:26452503-26452522 | None:intergenic | 35.0% |
| ATAAACGAATGAACCACTGT+TGG | - | chr8_3:26452572-26452591 | None:intergenic | 35.0% | |
| ACAATAAGGTGCATTTCAAG+TGG | - | chr8_3:26452640-26452659 | None:intergenic | 35.0% | |
| TTCTCATCAGCATGACAATA+AGG | - | chr8_3:26452654-26452673 | None:intergenic | 35.0% | |
| GTTTATTGACAGTTTGAGTG+TGG | + | chr8_3:26452782-26452801 | Msa1284300:three_prime_UTR | 35.0% | |
| ATGTAGTAAGTGTGTGTGTT+TGG | + | chr8_3:26452867-26452886 | Msa1284300:three_prime_UTR | 35.0% | |
| AGAGATGAAGGATGAGATGA+GGG | - | chr8_3:26449590-26449609 | None:intergenic | 40.0% | |
| AAGAGATGAAGGATGAGATG+AGG | - | chr8_3:26449591-26449610 | None:intergenic | 40.0% | |
| TTCTATGCCTACTTTGGTCT+TGG | - | chr8_3:26449698-26449717 | None:intergenic | 40.0% | |
| TGTGCTTTCTATGCCTACTT+TGG | - | chr8_3:26449704-26449723 | None:intergenic | 40.0% | |
| TCACCTGTTGCCAAAATCAA+TGG | + | chr8_3:26449742-26449761 | Msa1284300:CDS | 40.0% | |
| !!! | CTTCCATTGATTTTGGCAAC+AGG | - | chr8_3:26449748-26449767 | None:intergenic | 40.0% |
| ! | GGTAGTGAAAGTGATTTTGG+TGG | - | chr8_3:26449838-26449857 | None:intergenic | 40.0% |
| !!! | GATGAAGTTTTGGTTGGAAG+TGG | - | chr8_3:26449871-26449890 | None:intergenic | 40.0% |
| !!! | GGTGTTGATGAAGTTTTGGT+TGG | - | chr8_3:26449877-26449896 | None:intergenic | 40.0% |
| !!! | TGGTGGTGTTGATGAAGTTT+TGG | - | chr8_3:26449881-26449900 | None:intergenic | 40.0% |
| ! | GGTCTTGGTGACTTTAACTT+TGG | - | chr8_3:26449910-26449929 | None:intergenic | 40.0% |
| TTGACTCTCTTTGTTGCTGA+TGG | - | chr8_3:26449931-26449950 | None:intergenic | 40.0% | |
| AGTTTGAAAGAAGGGTCTTG+TGG | + | chr8_3:26450036-26450055 | Msa1284300:CDS | 40.0% | |
| TTCAAAAACAAGTGAGGAGG+AGG | + | chr8_3:26450251-26450270 | Msa1284300:CDS | 40.0% | |
| AAATACTAGCTAGTGCCCTA+AGG | + | chr8_3:26450572-26450591 | Msa1284300:intron | 40.0% | |
| TATCCTTAACCATTGCCCTT+AGG | + | chr8_3:26450712-26450731 | Msa1284300:intron | 40.0% | |
| ATCCTTAACCATTGCCCTTA+GGG | + | chr8_3:26450713-26450732 | Msa1284300:intron | 40.0% | |
| ! | TTTTGCTAACCAGTCCCTAA+GGG | - | chr8_3:26450730-26450749 | None:intergenic | 40.0% |
| GCTTATCATGATGAGGAATG+GGG | + | chr8_3:26451066-26451085 | Msa1284300:CDS | 40.0% | |
| ACTTACTGGTCATCATGAAC+TGG | - | chr8_3:26451096-26451115 | None:intergenic | 40.0% | |
| GTGTGACGAGAAAGAAAAGT+GGG | - | chr8_3:26451120-26451139 | None:intergenic | 40.0% | |
| TGTGTGACGAGAAAGAAAAG+TGG | - | chr8_3:26451121-26451140 | None:intergenic | 40.0% | |
| !! | GTTTTAAGTGGTGCTCAAGT+TGG | + | chr8_3:26451243-26451262 | Msa1284300:CDS | 40.0% |
| ! | GAAACGTCAAGATTTCAGGT+TGG | + | chr8_3:26451290-26451309 | Msa1284300:intron | 40.0% |
| ATCGACATAAGCAGAGTTAG+AGG | + | chr8_3:26451654-26451673 | Msa1284300:CDS | 40.0% | |
| AGACCAAGTAGAGGAACAAA+AGG | - | chr8_3:26451733-26451752 | None:intergenic | 40.0% | |
| AAAAGAGAGAGACCAAGTAG+AGG | - | chr8_3:26451742-26451761 | None:intergenic | 40.0% | |
| !! | CTGGTTCTAAATTGTGGTTG+CGG | + | chr8_3:26451783-26451802 | Msa1284300:intron | 40.0% |
| ATATACAAGTCCCGACAAGA+TGG | + | chr8_3:26452057-26452076 | Msa1284300:intron | 40.0% | |
| CAAACAGAATATATGGGGTC+AGG | - | chr8_3:26452094-26452113 | None:intergenic | 40.0% | |
| ATTCCACTTGTGTGACATTG+TGG | - | chr8_3:26452255-26452274 | None:intergenic | 40.0% | |
| !! | GAAATGTACCTGGAGTATTG+GGG | + | chr8_3:26452302-26452321 | Msa1284300:intron | 40.0% |
| ATGGCCAAACTTGTATTGTG+TGG | - | chr8_3:26452474-26452493 | None:intergenic | 40.0% | |
| AGCAAAGACATGATCAGAAG+AGG | + | chr8_3:26452530-26452549 | Msa1284300:CDS | 40.0% | |
| ACATGATCAGAAGAGGCTTT+AGG | + | chr8_3:26452537-26452556 | Msa1284300:CDS | 40.0% | |
| !! | AGAAGAGGCTTTAGGTTTGT+AGG | + | chr8_3:26452545-26452564 | Msa1284300:CDS | 40.0% |
| !! | GAAGAGGCTTTAGGTTTGTA+GGG | + | chr8_3:26452546-26452565 | Msa1284300:CDS | 40.0% |
| TGATTAAGTGGTCATTGGTG+AGG | - | chr8_3:26452607-26452626 | None:intergenic | 40.0% | |
| GCAAGTGATTAAGTGGTCAT+TGG | - | chr8_3:26452612-26452631 | None:intergenic | 40.0% | |
| GAGATGAAGGATGAGATGAG+GGG | - | chr8_3:26449589-26449608 | None:intergenic | 45.0% | |
| !!! | GAAGTTTTGGTTGGAAGTGG+TGG | - | chr8_3:26449868-26449887 | None:intergenic | 45.0% |
| CTCTTTGTTGCTGATGGTCT+TGG | - | chr8_3:26449925-26449944 | None:intergenic | 45.0% | |
| ! | GTTTTGCTAACCAGTCCCTA+AGG | - | chr8_3:26450731-26450750 | None:intergenic | 45.0% |
| !! | GTGCTCAAGTTGGATCTGAT+TGG | + | chr8_3:26451253-26451272 | Msa1284300:CDS | 45.0% |
| ! | AGTAGAGGAACAAAAGGCAC+AGG | - | chr8_3:26451727-26451746 | None:intergenic | 45.0% |
| ! | GTGCCTTTTGTTCCTCTACT+TGG | + | chr8_3:26451727-26451746 | Msa1284300:intron | 45.0% |
| GACCTCACTTATGTGACTTG+AGG | + | chr8_3:26452150-26452169 | Msa1284300:intron | 45.0% | |
| TGCCTCAAGTCACATAAGTG+AGG | - | chr8_3:26452155-26452174 | None:intergenic | 45.0% | |
| ATGTGACACGTGTCACATTG+TGG | - | chr8_3:26452203-26452222 | None:intergenic | 45.0% | |
| ATGTGACACGTGTCACATTG+TGG | + | chr8_3:26452203-26452222 | Msa1284300:intron | 45.0% | |
| CATTCGTTTATGCAAGCAGC+TGG | + | chr8_3:26452581-26452600 | Msa1284300:CDS | 45.0% | |
| TGAAGGATGAGATGAGGGGT+TGG | - | chr8_3:26449585-26449604 | None:intergenic | 50.0% | |
| TGCAGCTCCAAGACCAAAGT+AGG | + | chr8_3:26449688-26449707 | Msa1284300:CDS | 50.0% | |
| ! | GTTGGAAGTGGTGGTGATGA+TGG | - | chr8_3:26449859-26449878 | None:intergenic | 50.0% |
| ! | AGGGTCTTGTGGTTCTACTG+AGG | + | chr8_3:26450047-26450066 | Msa1284300:CDS | 50.0% |
| !! | GATTCACCAGGGAGTATTGC+TGG | + | chr8_3:26450102-26450121 | Msa1284300:CDS | 50.0% |
| TGGCTTGAGGAGAGAACAGA+TGG | + | chr8_3:26450122-26450141 | Msa1284300:CDS | 50.0% | |
| AGCTAGTGCCCTAAGGACAA+TGG | + | chr8_3:26450579-26450598 | Msa1284300:intron | 50.0% | |
| GTCCCTAAGGGCAATGGTTA+AGG | - | chr8_3:26450718-26450737 | None:intergenic | 50.0% | |
| TAACCATTGCCCTTAGGGAC+TGG | + | chr8_3:26450718-26450737 | Msa1284300:intron | 50.0% | |
| TAACCAGTCCCTAAGGGCAA+TGG | - | chr8_3:26450724-26450743 | None:intergenic | 50.0% | |
| TGACACGTGTCACATTGTGG+TGG | - | chr8_3:26452206-26452225 | None:intergenic | 50.0% | |
| CACTTGTGTGACATTGTGGC+AGG | - | chr8_3:26452251-26452270 | None:intergenic | 50.0% | |
| CTGCCACAATGTCACACAAG+TGG | + | chr8_3:26452249-26452268 | Msa1284300:intron | 50.0% | |
| !! | AGAGAGTACCCCAATACTCC+AGG | - | chr8_3:26452313-26452332 | None:intergenic | 50.0% |
| TAGGTTTGTAGGGCCAACAG+TGG | + | chr8_3:26452556-26452575 | Msa1284300:CDS | 50.0% | |
| GGCTGTGGCAAGTGATTAAG+TGG | - | chr8_3:26452619-26452638 | None:intergenic | 50.0% | |
| ! | AGGTGCATTTCAAGTGGCTG+TGG | - | chr8_3:26452634-26452653 | None:intergenic | 50.0% |
| AGGTGATGTAGCTGTGGCTG+TGG | - | chr8_3:26449728-26449747 | None:intergenic | 55.0% | |
| GGCAACAGGTGATGTAGCTG+TGG | - | chr8_3:26449734-26449753 | None:intergenic | 55.0% | |
| CTCAAGCCAGCAATACTCCC+TGG | - | chr8_3:26450111-26450130 | None:intergenic | 55.0% | |
| !! | CAGGGAGTATTGCTGGCTTG+AGG | + | chr8_3:26450109-26450128 | Msa1284300:CDS | 55.0% |
| TGGCATTGCAGCATGCTCAG+AGG | + | chr8_3:26450142-26450161 | Msa1284300:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 26449582 | 26453081 | 26449582 | ID=Msa1284300;Name=Msa1284300 |
| chr8_3 | mRNA | 26449582 | 26453081 | 26449582 | ID=Msa1284300-mRNA-1;Parent=Msa1284300;Name=Msa1284300-mRNA-1;_AED=0.16;_eAED=0.16;_QI=103|1|1|1|1|1|5|414|386 |
| chr8_3 | exon | 26449582 | 26450306 | 26449582 | ID=Msa1284300-mRNA-1:exon:9173;Parent=Msa1284300-mRNA-1 |
| chr8_3 | exon | 26451052 | 26451109 | 26451052 | ID=Msa1284300-mRNA-1:exon:9174;Parent=Msa1284300-mRNA-1 |
| chr8_3 | exon | 26451224 | 26451307 | 26451224 | ID=Msa1284300-mRNA-1:exon:9175;Parent=Msa1284300-mRNA-1 |
| chr8_3 | exon | 26451572 | 26451707 | 26451572 | ID=Msa1284300-mRNA-1:exon:9176;Parent=Msa1284300-mRNA-1 |
| chr8_3 | exon | 26452407 | 26453081 | 26452407 | ID=Msa1284300-mRNA-1:exon:9177;Parent=Msa1284300-mRNA-1 |
| chr8_3 | five_prime_UTR | 26449582 | 26449684 | 26449582 | ID=Msa1284300-mRNA-1:five_prime_utr;Parent=Msa1284300-mRNA-1 |
| chr8_3 | CDS | 26449685 | 26450306 | 26449685 | ID=Msa1284300-mRNA-1:cds;Parent=Msa1284300-mRNA-1 |
| chr8_3 | CDS | 26451052 | 26451109 | 26451052 | ID=Msa1284300-mRNA-1:cds;Parent=Msa1284300-mRNA-1 |
| chr8_3 | CDS | 26451224 | 26451307 | 26451224 | ID=Msa1284300-mRNA-1:cds;Parent=Msa1284300-mRNA-1 |
| chr8_3 | CDS | 26451572 | 26451707 | 26451572 | ID=Msa1284300-mRNA-1:cds;Parent=Msa1284300-mRNA-1 |
| chr8_3 | CDS | 26452407 | 26452667 | 26452407 | ID=Msa1284300-mRNA-1:cds;Parent=Msa1284300-mRNA-1 |
| chr8_3 | three_prime_UTR | 26452668 | 26453081 | 26452668 | ID=Msa1284300-mRNA-1:three_prime_utr;Parent=Msa1284300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
