Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1188630 | XP_013445298.1 | 95.337 | 386 | 15 | 1 | 1 | 386 | 1 | 383 | 0.0 | 754 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1188630 | sp|P05100|3MG1_ECOLI | 41.111 | 180 | 102 | 2 | 198 | 375 | 2 | 179 | 2.06e-49 | 168 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028060 | Msa1188630 | 0.814929 | 1.199106e-51 | -8.615850e-47 |
| Msa0608200 | Msa1188630 | 0.810065 | 1.387217e-50 | -8.615850e-47 |
| Msa0618040 | Msa1188630 | 0.806471 | 8.095215e-50 | -8.615850e-47 |
| Msa0743680 | Msa1188630 | 0.822943 | 1.807043e-53 | -8.615850e-47 |
| Msa0806300 | Msa1188630 | 0.824303 | 8.685881e-54 | -8.615850e-47 |
| Msa0825020 | Msa1188630 | 0.812014 | 5.245696e-51 | -8.615850e-47 |
| Msa0122630 | Msa1188630 | 0.806599 | 7.608319e-50 | -8.615850e-47 |
| Msa0149620 | Msa1188630 | 0.829141 | 6.078542e-55 | -8.615850e-47 |
| Msa0168250 | Msa1188630 | 0.812033 | 5.196193e-51 | -8.615850e-47 |
| Msa0381240 | Msa1188630 | 0.804585 | 2.012991e-49 | -8.615850e-47 |
| Msa0381290 | Msa1188630 | 0.821546 | 3.812945e-53 | -8.615850e-47 |
| Msa0431150 | Msa1188630 | 0.800431 | 1.445810e-48 | -8.615850e-47 |
| Msa1040120 | Msa1188630 | 0.808199 | 3.482769e-50 | -8.615850e-47 |
| Msa1097640 | Msa1188630 | 0.833327 | 5.683813e-56 | -8.615850e-47 |
| Msa0267760 | Msa1188630 | 0.801173 | 1.020178e-48 | -8.615850e-47 |
| Msa0282850 | Msa1188630 | 0.812939 | 3.294013e-51 | -8.615850e-47 |
| Msa1139810 | Msa1188630 | 0.802074 | 6.664922e-49 | -8.615850e-47 |
| Msa1188630 | Msa1212380 | 0.825602 | 4.286883e-54 | -8.615850e-47 |
| Msa1188630 | Msa1242600 | 0.876321 | 1.532105e-68 | -8.615850e-47 |
| Msa1188630 | Msa1259990 | 0.802335 | 5.890987e-49 | -8.615850e-47 |
| Msa1188630 | Msa1284300 | 0.910107 | 2.710044e-82 | -8.615850e-47 |
| Msa1188630 | Msa1323670 | 0.926182 | 6.661128e-91 | -8.615850e-47 |
| Msa1188630 | Msa1364470 | -0.810230 | 1.278149e-50 | -8.615850e-47 |
| Msa1188630 | Msa1440260 | -0.803321 | 3.686760e-49 | -8.615850e-47 |
| Msa0526710 | Msa1188630 | 0.804249 | 2.365256e-49 | -8.615850e-47 |
| Msa0532550 | Msa1188630 | 0.800519 | 1.387253e-48 | -8.615850e-47 |
| Msa0574890 | Msa1188630 | 0.813887 | 2.038222e-51 | -8.615850e-47 |
| Msa0863800 | Msa1188630 | 0.834393 | 3.075916e-56 | -8.615850e-47 |
| Msa0876180 | Msa1188630 | 0.808535 | 2.953279e-50 | -8.615850e-47 |
| Msa0930780 | Msa1188630 | 0.823310 | 1.483866e-53 | -8.615850e-47 |
| Msa0977320 | Msa1188630 | 0.805220 | 1.482681e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1188630 | MtrunA17_Chr8g0356301 | 95.337 | 386 | 15 | 1 | 1 | 386 | 1 | 383 | 0.0 | 754 |
| Msa1188630 | MtrunA17_Chr2g0309681 | 75.063 | 397 | 80 | 6 | 1 | 386 | 1 | 389 | 0.0 | 560 |
| Msa1188630 | MtrunA17_Chr4g0073991 | 51.064 | 188 | 90 | 1 | 197 | 382 | 147 | 334 | 5.93e-69 | 221 |
| Msa1188630 | MtrunA17_Chr4g0001371 | 49.215 | 191 | 95 | 1 | 195 | 383 | 134 | 324 | 4.26e-68 | 219 |
| Msa1188630 | MtrunA17_Chr5g0420791 | 46.354 | 192 | 101 | 1 | 196 | 385 | 110 | 301 | 2.88e-66 | 213 |
| Msa1188630 | MtrunA17_Chr8g0366071 | 47.179 | 195 | 98 | 2 | 196 | 385 | 114 | 308 | 7.25e-66 | 212 |
| Msa1188630 | MtrunA17_Chr3g0141411 | 50.265 | 189 | 91 | 2 | 198 | 383 | 128 | 316 | 2.19e-65 | 211 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1188630 | AT3G12710.1 | 68.000 | 275 | 70 | 4 | 114 | 385 | 50 | 309 | 2.05e-131 | 379 |
| Msa1188630 | AT5G44680.1 | 51.289 | 388 | 151 | 6 | 1 | 386 | 1 | 352 | 3.75e-131 | 380 |
| Msa1188630 | AT1G75090.1 | 51.596 | 188 | 89 | 1 | 198 | 383 | 119 | 306 | 2.83e-72 | 229 |
| Msa1188630 | AT1G80850.1 | 54.839 | 186 | 82 | 1 | 198 | 381 | 134 | 319 | 1.76e-71 | 227 |
| Msa1188630 | AT5G57970.1 | 52.356 | 191 | 89 | 1 | 195 | 383 | 151 | 341 | 2.72e-71 | 227 |
| Msa1188630 | AT5G57970.2 | 52.356 | 191 | 89 | 1 | 195 | 383 | 151 | 341 | 2.72e-71 | 227 |
| Msa1188630 | AT1G13635.2 | 46.919 | 211 | 109 | 2 | 178 | 385 | 94 | 304 | 2.10e-69 | 221 |
| Msa1188630 | AT1G13635.1 | 46.919 | 211 | 109 | 2 | 178 | 385 | 94 | 304 | 2.10e-69 | 221 |
| Msa1188630 | AT1G15970.1 | 50.785 | 191 | 86 | 2 | 198 | 383 | 145 | 332 | 6.76e-68 | 218 |
| Msa1188630 | AT1G15970.2 | 50.785 | 191 | 86 | 2 | 198 | 383 | 145 | 332 | 6.76e-68 | 218 |
Find 86 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTGGTCTTCCATTGATTT+TGG | 0.160140 | 8_1:+29044992 | None:intergenic |
| TTTAGTTAAAGGTGAGTTTA+AGG | 0.190916 | 8_1:-29041993 | Msa1188630:three_prime_UTR |
| TGAAGAAACGTCAGAATTTC+AGG | 0.191617 | 8_1:-29043654 | Msa1188630:intron |
| CTCTTTGTTGCTGGTGGTCT+TGG | 0.216304 | 8_1:+29044822 | None:intergenic |
| GAAATCTTTGTTAAATTTCT+TGG | 0.238097 | 8_1:+29044750 | None:intergenic |
| TTGTCTATTAGTTTGGAATA+TGG | 0.244808 | 8_1:-29043290 | Msa1188630:CDS |
| ACAAATGTTGTCTATTAGTT+TGG | 0.247258 | 8_1:-29043297 | Msa1188630:CDS |
| GACTTTAACTTTGGTGAAAT+TGG | 0.248820 | 8_1:+29044846 | None:intergenic |
| TTCTATGCCTACTTTGGTCT+TGG | 0.263306 | 8_1:+29045049 | None:intergenic |
| GAATTTCTTCTTTCAAGATT+TGG | 0.263831 | 8_1:+29044945 | None:intergenic |
| GATGGTAGTGAAAGTGATTT+TGG | 0.282834 | 8_1:+29044906 | None:intergenic |
| ATGTCTTCACTGGAATCTTA+TGG | 0.298466 | 8_1:+29042459 | None:intergenic |
| AAAATGAAGATTGCTCATTA+TGG | 0.312266 | 8_1:-29044579 | Msa1188630:CDS |
| AACTTGTATTGTGTGGAAAT+AGG | 0.315120 | 8_1:+29042485 | None:intergenic |
| ATAGAGGAGTATAGTGATAA+TGG | 0.321928 | 8_1:+29045105 | None:intergenic |
| TCATTGACTCTCTTTGTTGC+TGG | 0.326408 | 8_1:+29044813 | None:intergenic |
| ACATGATCAGAAGAGGCTTT+AGG | 0.331121 | 8_1:-29042412 | Msa1188630:CDS |
| CTCTCTGAATTACCTGAATT+AGG | 0.352616 | 8_1:+29044447 | None:intergenic |
| GGTCTTGGTGACTTTAACTT+TGG | 0.357782 | 8_1:+29044837 | None:intergenic |
| ATTTCCACACAATACAAGTT+TGG | 0.362445 | 8_1:-29042482 | Msa1188630:CDS |
| GTTCATTTGATAAATACATA+TGG | 0.363388 | 8_1:-29042526 | Msa1188630:CDS |
| AAGGTGAAATTGTTTATGTT+TGG | 0.366207 | 8_1:-29041974 | Msa1188630:three_prime_UTR |
| AGAATTTAATGCAGCAACTT+TGG | 0.368329 | 8_1:-29043336 | Msa1188630:CDS |
| TTCTCATCAGCATGACAATA+AGG | 0.369609 | 8_1:+29042298 | None:intergenic |
| ATCATGATAAGCAATATAGA+TGG | 0.377489 | 8_1:+29043882 | None:intergenic |
| AGAAGAGGCTTTAGGTTTGT+AGG | 0.383881 | 8_1:-29042404 | Msa1188630:CDS |
| TGCTTATCATGATGAGGAAT+GGG | 0.384161 | 8_1:-29043872 | Msa1188630:CDS |
| TGGTGGTGTTGATGAAGTTT+TGG | 0.386677 | 8_1:+29044866 | None:intergenic |
| TTACAAGTTGGTTGAAGAAC+TGG | 0.387400 | 8_1:+29044975 | None:intergenic |
| GATTCACCAGGGAGTATTGC+TGG | 0.391119 | 8_1:-29044642 | Msa1188630:CDS |
| AGCTTTATTACACCTAATTC+AGG | 0.412359 | 8_1:-29044459 | Msa1188630:intron |
| CTGACGTTTCTTCAAGATTG+AGG | 0.413643 | 8_1:+29043663 | None:intergenic |
| AAAGAGAAGGTAAGAGATGA+AGG | 0.419210 | 8_1:+29045145 | None:intergenic |
| CAGGGAGTATTGCTGGCTTA+AGG | 0.421059 | 8_1:-29044635 | Msa1188630:CDS |
| TTCATTTGATAAATACATAT+GGG | 0.421482 | 8_1:-29042525 | Msa1188630:CDS |
| ATGTAGTAAGTGTGTGTGTT+TGG | 0.452788 | 8_1:-29042082 | Msa1188630:three_prime_UTR |
| ACTTACTTGTCATCATGAAC+TGG | 0.454154 | 8_1:+29043844 | None:intergenic |
| GTTGGAAGTGGTGGTGATGA+TGG | 0.454983 | 8_1:+29044888 | None:intergenic |
| TCACCTGTTGCCAAAATCAA+TGG | 0.455608 | 8_1:-29045002 | Msa1188630:CDS |
| CATTTGTTTATCAGTTAAGC+TGG | 0.466390 | 8_1:+29043313 | None:intergenic |
| TGTGCTTTCTATGCCTACTT+TGG | 0.468054 | 8_1:+29045043 | None:intergenic |
| TTTGAAATAAGATTGCTTGA+AGG | 0.469481 | 8_1:+29044510 | None:intergenic |
| AGAGATGAAGGATGAGATGA+GGG | 0.474465 | 8_1:+29045157 | None:intergenic |
| TTACAGGTTAACAAGGACTT+TGG | 0.477182 | 8_1:-29042548 | Msa1188630:intron |
| CATTCGTTTATGCAAGCAGC+TGG | 0.483851 | 8_1:-29042368 | Msa1188630:CDS |
| TTGACTCTCTTTGTTGCTGG+TGG | 0.490510 | 8_1:+29044816 | None:intergenic |
| TGAAGGATGAGATGAGGGGT+TGG | 0.495544 | 8_1:+29045162 | None:intergenic |
| GAAGAGGCTTTAGGTTTGTA+GGG | 0.499476 | 8_1:-29042403 | Msa1188630:CDS |
| TTGCTTATCATGATGAGGAA+TGG | 0.508626 | 8_1:-29043873 | Msa1188630:CDS |
| AAGAGATGAAGGATGAGATG+AGG | 0.511684 | 8_1:+29045156 | None:intergenic |
| TGCTGTGTATAATATTAGAT+AGG | 0.518267 | 8_1:-29042231 | Msa1188630:three_prime_UTR |
| AGTCAAAGAGTTTGAAAGAA+GGG | 0.533649 | 8_1:-29044716 | Msa1188630:CDS |
| GTGCTCAAGTTGGATCTGAT+TGG | 0.533668 | 8_1:-29043687 | Msa1188630:CDS |
| TTTGGAACTCTGTTACAAGT+TGG | 0.544819 | 8_1:+29044963 | None:intergenic |
| AGGTGATGTAGCTGTGGCTG+TGG | 0.545571 | 8_1:+29045019 | None:intergenic |
| GTTTATTGACAGTTTGAGTG+TGG | 0.550766 | 8_1:-29042167 | Msa1188630:three_prime_UTR |
| AAGTCAAAGAGTTTGAAAGA+AGG | 0.556152 | 8_1:-29044717 | Msa1188630:CDS |
| TTTAACTTTGGTGAAATTGG+TGG | 0.559341 | 8_1:+29044849 | None:intergenic |
| TGCAGCTCCAAGACCAAAGT+AGG | 0.560303 | 8_1:-29045056 | Msa1188630:CDS |
| ATCGACATAAGCAGAGTTCG+AGG | 0.564739 | 8_1:-29043266 | Msa1188630:CDS |
| AGGTGCATTTCAAGTGGCTG+TGG | 0.567532 | 8_1:+29042318 | None:intergenic |
| AGCAAAGACATGATCAGAAG+AGG | 0.567539 | 8_1:-29042419 | Msa1188630:CDS |
| AGTTTGAAAGAAGGGTCTTG+TGG | 0.570144 | 8_1:-29044708 | Msa1188630:CDS |
| ATGAATGATATCAAAAGAGA+AGG | 0.571721 | 8_1:+29045132 | None:intergenic |
| GCAAGTGATTAAGTGGTCAT+TGG | 0.573542 | 8_1:+29042340 | None:intergenic |
| AGGGTCTTGTGGTTCTAATG+AGG | 0.579676 | 8_1:-29044697 | Msa1188630:CDS |
| GGCTGTGGCAAGTGATTAAG+TGG | 0.581468 | 8_1:+29042333 | None:intergenic |
| TCATTTGATAAATACATATG+GGG | 0.581577 | 8_1:-29042524 | Msa1188630:CDS |
| CTTAAGCCAGCAATACTCCC+TGG | 0.582568 | 8_1:+29044636 | None:intergenic |
| TCATGATAAGCAATATAGAT+GGG | 0.591991 | 8_1:+29043883 | None:intergenic |
| GGCAACAGGTGATGTAGCTG+TGG | 0.595305 | 8_1:+29045013 | None:intergenic |
| TGGCTTAAGGAGAGAACAGA+TGG | 0.595385 | 8_1:-29044622 | Msa1188630:CDS |
| CTATATTGCTTATCATGATG+AGG | 0.598338 | 8_1:-29043878 | Msa1188630:CDS |
| TTTCTTAGTTATGAGATGTG+AGG | 0.599222 | 8_1:-29042191 | Msa1188630:three_prime_UTR |
| AATTTGATCACTGATTCACC+AGG | 0.605594 | 8_1:-29044654 | Msa1188630:CDS |
| TAGGTTTGTAGGGCCAACAG+TGG | 0.605848 | 8_1:-29042393 | Msa1188630:CDS |
| ATTATATTTACAGGTTAACA+AGG | 0.614851 | 8_1:-29042555 | Msa1188630:intron |
| AGATTGCTTGAAGGATCAAG+AGG | 0.629865 | 8_1:+29044519 | None:intergenic |
| TGATTAAGTGGTCATTGGTG+AGG | 0.631169 | 8_1:+29042345 | None:intergenic |
| ATGGCCAAACTTGTATTGTG+TGG | 0.631469 | 8_1:+29042478 | None:intergenic |
| GAGATGAAGGATGAGATGAG+GGG | 0.635403 | 8_1:+29045158 | None:intergenic |
| ATAAACGAATGAACCACTGT+TGG | 0.637839 | 8_1:+29042380 | None:intergenic |
| ACAATAAGGTGCATTTCAAG+TGG | 0.639984 | 8_1:+29042312 | None:intergenic |
| GCTTATCATGATGAGGAATG+GGG | 0.660568 | 8_1:-29043871 | Msa1188630:CDS |
| TGGCATTGCAGCATGCTCAG+AGG | 0.687303 | 8_1:-29044602 | Msa1188630:CDS |
| ATTTGATCACTGATTCACCA+GGG | 0.698236 | 8_1:-29044653 | Msa1188630:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTAAATTAAATAAGAATAT+AGG | + | chr8_1:29042901-29042920 | None:intergenic | 10.0% |
| !! | AATTTAGTAATAGAATAAAT+AGG | - | chr8_1:29042913-29042932 | Msa1188630:intron | 10.0% |
| !! | ATTTAGTAATAGAATAAATA+GGG | - | chr8_1:29042914-29042933 | Msa1188630:intron | 10.0% |
| !! | TATTATTTAATTGATAAAAG+TGG | + | chr8_1:29043012-29043031 | None:intergenic | 10.0% |
| !! | TTAATATTCTCTTTATAAAT+TGG | - | chr8_1:29044471-29044490 | Msa1188630:CDS | 10.0% |
| !!! | ATTCAATCAAAAATTAATTT+TGG | + | chr8_1:29045004-29045023 | None:intergenic | 10.0% |
| !!! | CAAATTTTGTTAACTATTAT+TGG | - | chr8_1:29042643-29042662 | Msa1188630:intron | 15.0% |
| !!! | TGTGATTATTTATTTTTTGT+TGG | - | chr8_1:29042840-29042859 | Msa1188630:intron | 15.0% |
| !!! | TGAAATTTAAATTCTTTTAC+AGG | - | chr8_1:29043682-29043701 | Msa1188630:CDS | 15.0% |
| !! | TTCATTTGATAAATACATAT+GGG | - | chr8_1:29044527-29044546 | Msa1188630:CDS | 15.0% |
| !!! | GTAAAATTGATTTTAGTTAT+TGG | - | chr8_1:29045030-29045049 | Msa1188630:CDS | 15.0% |
| !!! | GATTTTTTAAGAAAGAATAG+AGG | + | chr8_1:29041966-29041985 | None:intergenic | 20.0% |
| !! | GAAATCTTTGTTAAATTTCT+TGG | + | chr8_1:29042305-29042324 | None:intergenic | 20.0% |
| !!! | TCTTATTTCAAAAACAAATG+AGG | - | chr8_1:29042553-29042572 | Msa1188630:intron | 20.0% |
| !! | ATCTTGAACATAATTAGTTA+TGG | - | chr8_1:29043036-29043055 | Msa1188630:intron | 20.0% |
| !! | TGTCTAAAAATAAAAGAAGT+GGG | + | chr8_1:29043078-29043097 | None:intergenic | 20.0% |
| !! | ATGTCTAAAAATAAAAGAAG+TGG | + | chr8_1:29043079-29043098 | None:intergenic | 20.0% |
| !! | TTTAATAAAAAGAGACACAT+TGG | + | chr8_1:29043144-29043163 | None:intergenic | 20.0% |
| !! | TTGTTAACCTGTAAATATAA+TGG | + | chr8_1:29044498-29044517 | None:intergenic | 20.0% |
| !! | ATTATATTTACAGGTTAACA+AGG | - | chr8_1:29044497-29044516 | Msa1188630:CDS | 20.0% |
| !! | GTTCATTTGATAAATACATA+TGG | - | chr8_1:29044526-29044545 | Msa1188630:CDS | 20.0% |
| !! | TCATTTGATAAATACATATG+GGG | - | chr8_1:29044528-29044547 | Msa1188630:CDS | 20.0% |
| !! | AGATAGGAACAAAAAAAAAT+TGG | - | chr8_1:29044837-29044856 | Msa1188630:CDS | 20.0% |
| !! | TAGAAAGAAGAAAAAAGTTT+AGG | - | chr8_1:29044943-29044962 | Msa1188630:CDS | 20.0% |
| ! | ATGAATGATATCAAAAGAGA+AGG | + | chr8_1:29041923-29041942 | None:intergenic | 25.0% |
| ! | GAATTTCTTCTTTCAAGATT+TGG | + | chr8_1:29042110-29042129 | None:intergenic | 25.0% |
| ! | AAAATGAAGATTGCTCATTA+TGG | - | chr8_1:29042473-29042492 | Msa1188630:CDS | 25.0% |
| !! | TTTGAAATAAGATTGCTTGA+AGG | + | chr8_1:29042545-29042564 | None:intergenic | 25.0% |
| ! | TATTTCAAAAACAAATGAGG+AGG | - | chr8_1:29042556-29042575 | Msa1188630:intron | 25.0% |
| !! | GATTAGTTATCAGAAAAATC+AGG | + | chr8_1:29042683-29042702 | None:intergenic | 25.0% |
| ! | GCTAAAAATATATTCTTCGA+CGG | + | chr8_1:29042707-29042726 | None:intergenic | 25.0% |
| !!! | CGAAGAATATATTTTTAGCT+AGG | - | chr8_1:29042708-29042727 | Msa1188630:intron | 25.0% |
| !!! | ACTCAGACTTTTTAAGTATA+TGG | + | chr8_1:29042765-29042784 | None:intergenic | 25.0% |
| ! | TTGATAAAAGTGGTTATCAT+AGG | + | chr8_1:29043002-29043021 | None:intergenic | 25.0% |
| ! | AACATAATTAGTTATGGACT+TGG | - | chr8_1:29043042-29043061 | Msa1188630:intron | 25.0% |
| ! | ACATAATTAGTTATGGACTT+GGG | - | chr8_1:29043043-29043062 | Msa1188630:intron | 25.0% |
| ! | TCATGATAAGCAATATAGAT+GGG | + | chr8_1:29043172-29043191 | None:intergenic | 25.0% |
| ! | ATCATGATAAGCAATATAGA+TGG | + | chr8_1:29043173-29043192 | None:intergenic | 25.0% |
| !!! | TTTGAACTTCTAGTTTTAAG+TGG | - | chr8_1:29043343-29043362 | Msa1188630:CDS | 25.0% |
| !!! | TATGTACTTTTTTCAGAATG+AGG | - | chr8_1:29043652-29043671 | Msa1188630:intron | 25.0% |
| !!! | ATGTACTTTTTTCAGAATGA+GGG | - | chr8_1:29043653-29043672 | Msa1188630:intron | 25.0% |
| ! | ACAAATGTTGTCTATTAGTT+TGG | - | chr8_1:29043755-29043774 | Msa1188630:intron | 25.0% |
| !! | TTGTCTATTAGTTTGGAATA+TGG | - | chr8_1:29043762-29043781 | Msa1188630:intron | 25.0% |
| !! | TAATGCTAATCGAATTTTAG+AGG | - | chr8_1:29043818-29043837 | Msa1188630:intron | 25.0% |
| ! | GCATATTATGATATTATAGC+TGG | - | chr8_1:29043896-29043915 | Msa1188630:intron | 25.0% |
| ! | TGTTTCAATGTTAATGTTTG+CGG | + | chr8_1:29043946-29043965 | None:intergenic | 25.0% |
| ! | GAGAATATAGTTCAAAATTG+CGG | + | chr8_1:29043994-29044013 | None:intergenic | 25.0% |
| !! | TCTTTGTTATAGTTGAAGTA+AGG | + | chr8_1:29044121-29044140 | None:intergenic | 25.0% |
| ! | AATTAAAATCTCCATCTTGT+CGG | + | chr8_1:29044174-29044193 | None:intergenic | 25.0% |
| ! | AGAGATCAAACAGAATATAT+GGG | + | chr8_1:29044203-29044222 | None:intergenic | 25.0% |
| ! | TAGAGATCAAACAGAATATA+TGG | + | chr8_1:29044204-29044223 | None:intergenic | 25.0% |
| ! | AAACAAATATGAAATGTACC+TGG | - | chr8_1:29044395-29044414 | Msa1188630:intron | 25.0% |
| ! | AATTGGTCCATTATATTTAC+AGG | - | chr8_1:29044488-29044507 | Msa1188630:CDS | 25.0% |
| ! | TGCTGTGTATAATATTAGAT+AGG | - | chr8_1:29044821-29044840 | Msa1188630:CDS | 25.0% |
| !!! | ATTGGTGAGATTTTAGTTAA+AGG | - | chr8_1:29045048-29045067 | Msa1188630:CDS | 25.0% |
| ! | TTTAGTTAAAGGTGAGTTTA+AGG | - | chr8_1:29045059-29045078 | Msa1188630:CDS | 25.0% |
| ! | AAGGTGAAATTGTTTATGTT+TGG | - | chr8_1:29045078-29045097 | Msa1188630:exon | 25.0% |
| ! | ATAGAGGAGTATAGTGATAA+TGG | + | chr8_1:29041950-29041969 | None:intergenic | 30.0% |
| ! | TTTAACTTTGGTGAAATTGG+TGG | + | chr8_1:29042206-29042225 | None:intergenic | 30.0% |
| ! | GACTTTAACTTTGGTGAAAT+TGG | + | chr8_1:29042209-29042228 | None:intergenic | 30.0% |
| AAGTCAAAGAGTTTGAAAGA+AGG | - | chr8_1:29042335-29042354 | Msa1188630:CDS | 30.0% | |
| AGTCAAAGAGTTTGAAAGAA+GGG | - | chr8_1:29042336-29042355 | Msa1188630:CDS | 30.0% | |
| !! | AGCTTTATTACACCTAATTC+AGG | - | chr8_1:29042593-29042612 | Msa1188630:intron | 30.0% |
| ! | GATTTATTGACTGATTGATG+AGG | - | chr8_1:29042954-29042973 | Msa1188630:intron | 30.0% |
| CATAATTAGTTATGGACTTG+GGG | - | chr8_1:29043044-29043063 | Msa1188630:intron | 30.0% | |
| CTATATTGCTTATCATGATG+AGG | - | chr8_1:29043174-29043193 | Msa1188630:intron | 30.0% | |
| !! | TCATTGTGTTTTTGTGTGAT+GGG | + | chr8_1:29043248-29043267 | None:intergenic | 30.0% |
| !! | TTCATTGTGTTTTTGTGTGA+TGG | + | chr8_1:29043249-29043268 | None:intergenic | 30.0% |
| !!! | TGTACTTTTTTCAGAATGAG+GGG | - | chr8_1:29043654-29043673 | Msa1188630:intron | 30.0% |
| AGAATTTAATGCAGCAACTT+TGG | - | chr8_1:29043716-29043735 | Msa1188630:CDS | 30.0% | |
| CATTTGTTTATCAGTTAAGC+TGG | + | chr8_1:29043742-29043761 | None:intergenic | 30.0% | |
| !! | TTATAGCTGGTTCTAAATTG+TGG | - | chr8_1:29043909-29043928 | Msa1188630:intron | 30.0% |
| GTAGAATGTTCACTAAAAAC+AGG | + | chr8_1:29044030-29044049 | None:intergenic | 30.0% | |
| ATTAAAATCTCCATCTTGTC+GGG | + | chr8_1:29044173-29044192 | None:intergenic | 30.0% | |
| GAGATCAAACAGAATATATG+GGG | + | chr8_1:29044202-29044221 | None:intergenic | 30.0% | |
| AACTTGTATTGTGTGGAAAT+AGG | + | chr8_1:29044570-29044589 | None:intergenic | 30.0% | |
| ATTTCCACACAATACAAGTT+TGG | - | chr8_1:29044570-29044589 | Msa1188630:CDS | 30.0% | |
| TTTCTTAGTTATGAGATGTG+AGG | - | chr8_1:29044861-29044880 | Msa1188630:CDS | 30.0% | |
| AAAGAGAAGGTAAGAGATGA+AGG | + | chr8_1:29041910-29041929 | None:intergenic | 35.0% | |
| !!! | AACTGGTCTTCCATTGATTT+TGG | + | chr8_1:29042063-29042082 | None:intergenic | 35.0% |
| !! | TTACAAGTTGGTTGAAGAAC+TGG | + | chr8_1:29042080-29042099 | None:intergenic | 35.0% |
| ! | TTTGGAACTCTGTTACAAGT+TGG | + | chr8_1:29042092-29042111 | None:intergenic | 35.0% |
| !! | GATGGTAGTGAAAGTGATTT+TGG | + | chr8_1:29042149-29042168 | None:intergenic | 35.0% |
| !! | AATTTGATCACTGATTCACC+AGG | - | chr8_1:29042398-29042417 | Msa1188630:CDS | 35.0% |
| !! | ATTTGATCACTGATTCACCA+GGG | - | chr8_1:29042399-29042418 | Msa1188630:CDS | 35.0% |
| TTCAAAAACAAATGAGGAGG+AGG | - | chr8_1:29042559-29042578 | Msa1188630:intron | 35.0% | |
| CTCTCTGAATTACCTGAATT+AGG | + | chr8_1:29042608-29042627 | None:intergenic | 35.0% | |
| TATGGTCTCAAATTTGAGTC+TGG | + | chr8_1:29042747-29042766 | None:intergenic | 35.0% | |
| TTGCTTATCATGATGAGGAA+TGG | - | chr8_1:29043179-29043198 | Msa1188630:intron | 35.0% | |
| TGCTTATCATGATGAGGAAT+GGG | - | chr8_1:29043180-29043199 | Msa1188630:intron | 35.0% | |
| ACTTACTTGTCATCATGAAC+TGG | + | chr8_1:29043211-29043230 | None:intergenic | 35.0% | |
| ! | AAAAATGCTTTTGCACTTGC+AGG | - | chr8_1:29043314-29043333 | Msa1188630:CDS | 35.0% |
| TGAAGAAACGTCAGAATTTC+AGG | - | chr8_1:29043398-29043417 | Msa1188630:intron | 35.0% | |
| TCAGACACATCATAAAGTGT+CGG | + | chr8_1:29043454-29043473 | None:intergenic | 35.0% | |
| GTTTGACACTAACACTAACA+CGG | - | chr8_1:29043485-29043504 | Msa1188630:intron | 35.0% | |
| ! | ATAAGAGAGGTCGTGATTTT+AGG | + | chr8_1:29044245-29044264 | None:intergenic | 35.0% |
| ATGAAATGTACCTGGAGTAT+TGG | - | chr8_1:29044403-29044422 | Msa1188630:intron | 35.0% | |
| ! | TGAAATGTACCTGGAGTATT+GGG | - | chr8_1:29044404-29044423 | Msa1188630:intron | 35.0% |
| TTACAGGTTAACAAGGACTT+TGG | - | chr8_1:29044504-29044523 | Msa1188630:CDS | 35.0% | |
| ATGTCTTCACTGGAATCTTA+TGG | + | chr8_1:29044596-29044615 | None:intergenic | 35.0% | |
| !! | TCTGATTTTGATGTCTTCAC+TGG | + | chr8_1:29044606-29044625 | None:intergenic | 35.0% |
| ATAAACGAATGAACCACTGT+TGG | + | chr8_1:29044675-29044694 | None:intergenic | 35.0% | |
| ACAATAAGGTGCATTTCAAG+TGG | + | chr8_1:29044743-29044762 | None:intergenic | 35.0% | |
| TTCTCATCAGCATGACAATA+AGG | + | chr8_1:29044757-29044776 | None:intergenic | 35.0% | |
| GTTTATTGACAGTTTGAGTG+TGG | - | chr8_1:29044885-29044904 | Msa1188630:CDS | 35.0% | |
| ATGTAGTAAGTGTGTGTGTT+TGG | - | chr8_1:29044970-29044989 | Msa1188630:CDS | 35.0% | |
| AGAGATGAAGGATGAGATGA+GGG | + | chr8_1:29041898-29041917 | None:intergenic | 40.0% | |
| AAGAGATGAAGGATGAGATG+AGG | + | chr8_1:29041899-29041918 | None:intergenic | 40.0% | |
| TTCTATGCCTACTTTGGTCT+TGG | + | chr8_1:29042006-29042025 | None:intergenic | 40.0% | |
| TGTGCTTTCTATGCCTACTT+TGG | + | chr8_1:29042012-29042031 | None:intergenic | 40.0% | |
| TCACCTGTTGCCAAAATCAA+TGG | - | chr8_1:29042050-29042069 | Msa1188630:three_prime_UTR | 40.0% | |
| !!! | CTTCCATTGATTTTGGCAAC+AGG | + | chr8_1:29042056-29042075 | None:intergenic | 40.0% |
| ! | GGTAGTGAAAGTGATTTTGG+TGG | + | chr8_1:29042146-29042165 | None:intergenic | 40.0% |
| !!! | GATGAAGTTTTGGTTGGAAG+TGG | + | chr8_1:29042179-29042198 | None:intergenic | 40.0% |
| !!! | GGTGTTGATGAAGTTTTGGT+TGG | + | chr8_1:29042185-29042204 | None:intergenic | 40.0% |
| !!! | TGGTGGTGTTGATGAAGTTT+TGG | + | chr8_1:29042189-29042208 | None:intergenic | 40.0% |
| ! | GGTCTTGGTGACTTTAACTT+TGG | + | chr8_1:29042218-29042237 | None:intergenic | 40.0% |
| !! | TCATTGACTCTCTTTGTTGC+TGG | + | chr8_1:29042242-29042261 | None:intergenic | 40.0% |
| AGTTTGAAAGAAGGGTCTTG+TGG | - | chr8_1:29042344-29042363 | Msa1188630:CDS | 40.0% | |
| AGATTGCTTGAAGGATCAAG+AGG | + | chr8_1:29042536-29042555 | None:intergenic | 40.0% | |
| GCTTATCATGATGAGGAATG+GGG | - | chr8_1:29043181-29043200 | Msa1188630:intron | 40.0% | |
| !! | GTTTTAAGTGGTGCTCAAGT+TGG | - | chr8_1:29043355-29043374 | Msa1188630:intron | 40.0% |
| CTGACGTTTCTTCAAGATTG+AGG | + | chr8_1:29043392-29043411 | None:intergenic | 40.0% | |
| ! | GAAACGTCAGAATTTCAGGT+TGG | - | chr8_1:29043402-29043421 | Msa1188630:intron | 40.0% |
| !! | CACTAACACGGTATTGATAC+TGG | - | chr8_1:29043497-29043516 | Msa1188630:intron | 40.0% |
| ! | GACAGTGTAGGTATTGTGTT+TGG | - | chr8_1:29043575-29043594 | Msa1188630:intron | 40.0% |
| AGACCAAGTAGAGGAACAAA+AGG | + | chr8_1:29043865-29043884 | None:intergenic | 40.0% | |
| AAAAGAGAGAGACCAAGTAG+AGG | + | chr8_1:29043874-29043893 | None:intergenic | 40.0% | |
| ATATACAAGTCCCGACAAGA+TGG | - | chr8_1:29044160-29044179 | Msa1188630:intron | 40.0% | |
| CAAACAGAATATATGGGGTC+AGG | + | chr8_1:29044197-29044216 | None:intergenic | 40.0% | |
| !! | GAAATGTACCTGGAGTATTG+GGG | - | chr8_1:29044405-29044424 | Msa1188630:intron | 40.0% |
| ATGGCCAAACTTGTATTGTG+TGG | + | chr8_1:29044577-29044596 | None:intergenic | 40.0% | |
| AGCAAAGACATGATCAGAAG+AGG | - | chr8_1:29044633-29044652 | Msa1188630:CDS | 40.0% | |
| ACATGATCAGAAGAGGCTTT+AGG | - | chr8_1:29044640-29044659 | Msa1188630:CDS | 40.0% | |
| !! | AGAAGAGGCTTTAGGTTTGT+AGG | - | chr8_1:29044648-29044667 | Msa1188630:CDS | 40.0% |
| !! | GAAGAGGCTTTAGGTTTGTA+GGG | - | chr8_1:29044649-29044668 | Msa1188630:CDS | 40.0% |
| TGATTAAGTGGTCATTGGTG+AGG | + | chr8_1:29044710-29044729 | None:intergenic | 40.0% | |
| GCAAGTGATTAAGTGGTCAT+TGG | + | chr8_1:29044715-29044734 | None:intergenic | 40.0% | |
| GAGATGAAGGATGAGATGAG+GGG | + | chr8_1:29041897-29041916 | None:intergenic | 45.0% | |
| ! | CTTGGAGCTGCACATTTTGT+TGG | + | chr8_1:29041988-29042007 | None:intergenic | 45.0% |
| !!! | GAAGTTTTGGTTGGAAGTGG+TGG | + | chr8_1:29042176-29042195 | None:intergenic | 45.0% |
| TTGACTCTCTTTGTTGCTGG+TGG | + | chr8_1:29042239-29042258 | None:intergenic | 45.0% | |
| !! | AGGGTCTTGTGGTTCTAATG+AGG | - | chr8_1:29042355-29042374 | Msa1188630:CDS | 45.0% |
| TGGCTTAAGGAGAGAACAGA+TGG | - | chr8_1:29042430-29042449 | Msa1188630:CDS | 45.0% | |
| ! | GTGTGATGGGAAAGAGAAGT+GGG | + | chr8_1:29043235-29043254 | None:intergenic | 45.0% |
| ! | TGTGTGATGGGAAAGAGAAG+TGG | + | chr8_1:29043236-29043255 | None:intergenic | 45.0% |
| !! | GTGCTCAAGTTGGATCTGAT+TGG | - | chr8_1:29043365-29043384 | Msa1188630:intron | 45.0% |
| ATCGACATAAGCAGAGTTCG+AGG | - | chr8_1:29043786-29043805 | Msa1188630:intron | 45.0% | |
| ! | AGTAGAGGAACAAAAGGCAC+AGG | + | chr8_1:29043859-29043878 | None:intergenic | 45.0% |
| ! | GTGCCTTTTGTTCCTCTACT+TGG | - | chr8_1:29043859-29043878 | Msa1188630:CDS | 45.0% |
| GACCTCTCTTATGTGACTTG+AGG | - | chr8_1:29044253-29044272 | Msa1188630:intron | 45.0% | |
| TGCCTCAAGTCACATAAGAG+AGG | + | chr8_1:29044258-29044277 | None:intergenic | 45.0% | |
| ATGTGACACGTGTCACATTG+TGG | + | chr8_1:29044306-29044325 | None:intergenic | 45.0% | |
| ATGTGACACGTGTCACATTG+TGG | - | chr8_1:29044306-29044325 | Msa1188630:intron | 45.0% | |
| ATCCCACTTGTGTGACATTG+TGG | + | chr8_1:29044358-29044377 | None:intergenic | 45.0% | |
| CATTCGTTTATGCAAGCAGC+TGG | - | chr8_1:29044684-29044703 | Msa1188630:CDS | 45.0% | |
| TGAAGGATGAGATGAGGGGT+TGG | + | chr8_1:29041893-29041912 | None:intergenic | 50.0% | |
| TGCAGCTCCAAGACCAAAGT+AGG | - | chr8_1:29041996-29042015 | Msa1188630:three_prime_UTR | 50.0% | |
| ! | GTTGGAAGTGGTGGTGATGA+TGG | + | chr8_1:29042167-29042186 | None:intergenic | 50.0% |
| CTCTTTGTTGCTGGTGGTCT+TGG | + | chr8_1:29042233-29042252 | None:intergenic | 50.0% | |
| !! | GATTCACCAGGGAGTATTGC+TGG | - | chr8_1:29042410-29042429 | Msa1188630:CDS | 50.0% |
| CTTAAGCCAGCAATACTCCC+TGG | + | chr8_1:29042419-29042438 | None:intergenic | 50.0% | |
| !! | CAGGGAGTATTGCTGGCTTA+AGG | - | chr8_1:29042417-29042436 | Msa1188630:CDS | 50.0% |
| CACTGTCACTGAGACAGACA+CGG | + | chr8_1:29043562-29043581 | None:intergenic | 50.0% | |
| GTCTGTCTCAGTGACAGTGT+AGG | - | chr8_1:29043563-29043582 | Msa1188630:intron | 50.0% | |
| TGACACGTGTCACATTGTGG+TGG | + | chr8_1:29044309-29044328 | None:intergenic | 50.0% | |
| CACTTGTGTGACATTGTGGC+GGG | + | chr8_1:29044354-29044373 | None:intergenic | 50.0% | |
| CCACTTGTGTGACATTGTGG+CGG | + | chr8_1:29044355-29044374 | None:intergenic | 50.0% | |
| CGCCACAATGTCACACAAGT+GGG | - | chr8_1:29044353-29044372 | Msa1188630:intron | 50.0% | |
| !! | AGAGAGTACCCCAATACTCC+AGG | + | chr8_1:29044416-29044435 | None:intergenic | 50.0% |
| TAGGTTTGTAGGGCCAACAG+TGG | - | chr8_1:29044659-29044678 | Msa1188630:CDS | 50.0% | |
| GGCTGTGGCAAGTGATTAAG+TGG | + | chr8_1:29044722-29044741 | None:intergenic | 50.0% | |
| ! | AGGTGCATTTCAAGTGGCTG+TGG | + | chr8_1:29044737-29044756 | None:intergenic | 50.0% |
| AGGTGATGTAGCTGTGGCTG+TGG | + | chr8_1:29042036-29042055 | None:intergenic | 55.0% | |
| GGCAACAGGTGATGTAGCTG+TGG | + | chr8_1:29042042-29042061 | None:intergenic | 55.0% | |
| TGGCATTGCAGCATGCTCAG+AGG | - | chr8_1:29042450-29042469 | Msa1188630:CDS | 55.0% | |
| CCGCCACAATGTCACACAAG+TGG | - | chr8_1:29044352-29044371 | Msa1188630:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 29041890 | 29045184 | 29041890 | ID=Msa1188630;Name=Msa1188630 |
| chr8_1 | mRNA | 29041890 | 29045184 | 29041890 | ID=Msa1188630-mRNA-1;Parent=Msa1188630;Name=Msa1188630-mRNA-1;_AED=0.16;_eAED=0.16;_QI=103|1|1|1|1|1|5|414|386 |
| chr8_1 | exon | 29041890 | 29042564 | 29041890 | ID=Msa1188630-mRNA-1:exon:10194;Parent=Msa1188630-mRNA-1 |
| chr8_1 | exon | 29043235 | 29043370 | 29043235 | ID=Msa1188630-mRNA-1:exon:10193;Parent=Msa1188630-mRNA-1 |
| chr8_1 | exon | 29043655 | 29043738 | 29043655 | ID=Msa1188630-mRNA-1:exon:10192;Parent=Msa1188630-mRNA-1 |
| chr8_1 | exon | 29043850 | 29043907 | 29043850 | ID=Msa1188630-mRNA-1:exon:10191;Parent=Msa1188630-mRNA-1 |
| chr8_1 | exon | 29044460 | 29045184 | 29044460 | ID=Msa1188630-mRNA-1:exon:10190;Parent=Msa1188630-mRNA-1 |
| chr8_1 | five_prime_UTR | 29045082 | 29045184 | 29045082 | ID=Msa1188630-mRNA-1:five_prime_utr;Parent=Msa1188630-mRNA-1 |
| chr8_1 | CDS | 29044460 | 29045081 | 29044460 | ID=Msa1188630-mRNA-1:cds;Parent=Msa1188630-mRNA-1 |
| chr8_1 | CDS | 29043850 | 29043907 | 29043850 | ID=Msa1188630-mRNA-1:cds;Parent=Msa1188630-mRNA-1 |
| chr8_1 | CDS | 29043655 | 29043738 | 29043655 | ID=Msa1188630-mRNA-1:cds;Parent=Msa1188630-mRNA-1 |
| chr8_1 | CDS | 29043235 | 29043370 | 29043235 | ID=Msa1188630-mRNA-1:cds;Parent=Msa1188630-mRNA-1 |
| chr8_1 | CDS | 29042304 | 29042564 | 29042304 | ID=Msa1188630-mRNA-1:cds;Parent=Msa1188630-mRNA-1 |
| chr8_1 | three_prime_UTR | 29041890 | 29042303 | 29041890 | ID=Msa1188630-mRNA-1:three_prime_utr;Parent=Msa1188630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
