AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1243160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1243160 MtrunA17_Chr8g0348911 95.644 505 21 1 1 505 1 504 0.0 931
Msa1243160 MtrunA17_Chr8g0356271 93.238 281 18 1 65 345 12 291 0.0 508
Msa1243160 MtrunA17_Chr4g0042331 53.571 84 28 3 357 437 5 80 5.85e-13 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1243160 AT1G31870.1 54.312 545 195 18 2 505 3 534 3.99e-155 454
Msa1243160 AT1G31870.2 54.312 545 195 18 2 505 3 534 3.99e-155 454

Find 150 sgRNAs with CRISPR-Local

Find 360 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACGTGACTCACAACATTC+TGG 0.245342 8_2:+28229284 Msa1243160:CDS
GAGAAGAGATTGACAGAAAA+AGG 0.256770 8_2:+28229807 Msa1243160:CDS
AATGGGATCTAACTCATTAA+AGG 0.275049 8_2:+28228727 Msa1243160:exon
CATTTCGAACCCTCTGTTTA+CGG 0.284042 8_2:-28229151 None:intergenic
AGCTGTTTCACATCAATCTT+TGG 0.286796 8_2:+28229685 Msa1243160:CDS
GAAGTTGAAGTATTCAATTC+AGG 0.293414 8_2:-28229194 None:intergenic
TGACTTTAAATATTCCTCTT+TGG 0.299212 8_2:-28231175 None:intergenic
CTCTTCAACCAGCTATGATT+TGG 0.315542 8_2:-28233626 None:intergenic
TTCATCAACTTGTCAAGTTC+AGG 0.318505 8_2:-28233377 None:intergenic
GTTCACGTTTAACAAGATTA+AGG 0.328873 8_2:+28228341 Msa1243160:five_prime_UTR
GTATTCAATTCAGGTGGTTC+TGG 0.330517 8_2:-28229185 None:intergenic
ATTTCGAACCCTCTGTTTAC+GGG 0.334458 8_2:-28229150 None:intergenic
ATCTGATGTTTCTCATCGTT+CGG 0.364599 8_2:+28229658 Msa1243160:CDS
AACTCCTTTGAATTCTTCCT+TGG 0.381872 8_2:-28229725 None:intergenic
CCCTCTCAAGATACTTTACA+TGG 0.387845 8_2:+28229572 Msa1243160:CDS
TTCAGGAGATTAAAATAGAA+TGG 0.388923 8_2:+28232462 Msa1243160:intron
TGCAAAACCCTTTCTTCCTC+CGG 0.391055 8_2:-28228312 None:intergenic
CGGCGAGGAGGGGAAATATC+TGG 0.399577 8_2:-28229452 None:intergenic
TCAGGAGATTAAAATAGAAT+GGG 0.399683 8_2:+28232463 Msa1243160:intron
AGTGATAAAATGAGGGAATC+TGG 0.400500 8_2:+28233581 Msa1243160:CDS
GAATGTTGTGAGTCACGTTC+AGG 0.401905 8_2:-28229281 None:intergenic
GGCCTTATCCCATACCGGTT+TGG 0.407057 8_2:-28233665 None:intergenic
TCCTTTGAATTCTTCCTTGG+TGG 0.410270 8_2:-28229722 None:intergenic
GACATTGGTGGCTTAAACAA+TGG 0.415117 8_2:+28228709 Msa1243160:exon
AGAGCCTGTTCTTCCAAACT+TGG 0.417046 8_2:+28233553 Msa1243160:CDS
AACAGGTTTAATTTCTGGTA+AGG 0.424018 8_2:+28229778 Msa1243160:CDS
GATGAAGGAGAGGGTAAGAT+GGG 0.428301 8_2:+28233394 Msa1243160:CDS
AACGTGACTCACAACATTCT+GGG 0.432084 8_2:+28229285 Msa1243160:CDS
CTCCAAACCGGTATGGGATA+AGG 0.439707 8_2:+28233663 Msa1243160:CDS
TTTCTTTCATGAACAGATGC+TGG 0.447074 8_2:-28229755 None:intergenic
AGCGGAAACCGGAGGAAGAA+AGG 0.454591 8_2:+28228304 Msa1243160:five_prime_UTR
GTATACCTGGTCCGCGCAAA+AGG 0.455986 8_2:-28232554 None:intergenic
GGTGGAGACGAAGCGGAAAC+CGG 0.456267 8_2:+28228293 Msa1243160:five_prime_UTR
TGATGAAGGAGAGGGTAAGA+TGG 0.456909 8_2:+28233393 Msa1243160:CDS
AAAACTCAACCACAACCAAC+TGG 0.460869 8_2:+28228815 Msa1243160:CDS
GAGCCTGTTCTTCCAAACTT+GGG 0.463185 8_2:+28233554 Msa1243160:CDS
ATCTGAGGATGGAAGTGGTT+GGG 0.465979 8_2:+28229097 Msa1243160:CDS
AGATCTTTCTCCACCTAGAC+GGG 0.466078 8_2:+28229535 Msa1243160:CDS
CGTCGTAGTCATCAAACATC+TGG 0.469269 8_2:+28229473 Msa1243160:CDS
GGATAAGGCCGGGACGACAC+TGG 0.471920 8_2:+28233678 Msa1243160:CDS
AAGATCTACGGGCTTCTGCC+AGG 0.476674 8_2:-28228864 None:intergenic
GCGCCGCGCCCACTGATGAC+AGG 0.477012 8_2:-28230672 None:intergenic
GGTAAGATGGGGTGATCCTA+TGG 0.477138 8_2:+28233406 Msa1243160:CDS
ACTTCAACTTCTAATAGAAC+GGG 0.478556 8_2:+28229206 Msa1243160:CDS
GTTTCAACTGCCTCCGCGAA+GGG 0.484022 8_2:-28229241 None:intergenic
AATTCAGGTGGTTCTGGTGA+AGG 0.487081 8_2:-28229179 None:intergenic
AAGTTTGGAAGAACAGGCTC+TGG 0.491230 8_2:-28233551 None:intergenic
CAAGGGCCTTGCTCAAAAGC+GGG 0.491703 8_2:+28232487 Msa1243160:CDS
GAAAACGATGAAAAGTTGTC+AGG 0.495605 8_2:+28228893 Msa1243160:CDS
GAAGCTGCTCCAAACCGGTA+TGG 0.496486 8_2:+28233656 Msa1243160:CDS
TCGATCTTGCCACACTATGC+TGG 0.503889 8_2:-28229631 None:intergenic
GATGTATCATTATTTGAAAG+TGG 0.503959 8_2:-28229122 None:intergenic
GATAAGGCCGGGACGACACT+GGG 0.506196 8_2:+28233679 Msa1243160:CDS
CATCAAACATCTGGATCCAA+TGG 0.507590 8_2:+28229482 Msa1243160:CDS
ACATTGGTGGCTTAAACAAT+GGG 0.514258 8_2:+28228710 Msa1243160:exon
ACACCATCCCAGTGTCGTCC+CGG 0.521413 8_2:-28233686 None:intergenic
GTTTAGAAGCTGCTCCAAAC+CGG 0.522757 8_2:+28233651 Msa1243160:CDS
AAGATATTCCAAATCATAGC+TGG 0.523457 8_2:+28233618 Msa1243160:CDS
TACTTCAACTTCTAATAGAA+CGG 0.524836 8_2:+28229205 Msa1243160:CDS
TATCTGAGGATGGAAGTGGT+TGG 0.525213 8_2:+28229096 Msa1243160:CDS
TTCATGAACAGATGCTGGAA+TGG 0.525490 8_2:-28229750 None:intergenic
AAGCTGCTCCAAACCGGTAT+GGG 0.528693 8_2:+28233657 Msa1243160:CDS
AACCGGTATGGGATAAGGCC+GGG 0.528901 8_2:+28233668 Msa1243160:CDS
AAACCGGTATGGGATAAGGC+CGG 0.531807 8_2:+28233667 Msa1243160:CDS
AGCCTGTTCTTCCAAACTTG+GGG 0.533247 8_2:+28233555 Msa1243160:CDS
GACCCTGTCATCAGTGGGCG+CGG 0.533488 8_2:+28230669 Msa1243160:CDS
ACTAACAAGCCAGTTGGTTG+TGG 0.533522 8_2:-28228824 None:intergenic
TCAATGTCTTCGTCAACTAT+CGG 0.535277 8_2:-28229017 None:intergenic
AAAGGAACTAGAAGTTGAGA+AGG 0.540761 8_2:+28232526 Msa1243160:CDS
TGCTCAAAAGCGGGAAGCTG+AGG 0.540947 8_2:+28232496 Msa1243160:CDS
ACACTATGCTGGCGTCTCCG+TGG 0.542123 8_2:-28229620 None:intergenic
GGTTGAAGTGTAGACATTGG+TGG 0.545551 8_2:+28228697 Msa1243160:five_prime_UTR
AAAATATGACACTTCTGACT+TGG 0.548593 8_2:+28229511 Msa1243160:CDS
GCGGAAACCGGAGGAAGAAA+GGG 0.549335 8_2:+28228305 Msa1243160:five_prime_UTR
TCCTATGGCACATCTAGTAA+AGG 0.551319 8_2:+28233421 Msa1243160:CDS
GTGCTGATTTATCCCCTTCG+CGG 0.552536 8_2:+28229228 Msa1243160:CDS
ATCAAACATCTGGATCCAAT+GGG 0.558181 8_2:+28229483 Msa1243160:CDS
GAATCATGACGACCCCGTCT+AGG 0.558192 8_2:-28229548 None:intergenic
AATTCTTCCTTGGTGGAGAG+AGG 0.560682 8_2:-28229715 None:intergenic
TCTACGGGCTTCTGCCAGGT+TGG 0.560783 8_2:-28228860 None:intergenic
GCAAGGGCCTTGCTCAAAAG+CGG 0.562182 8_2:+28232486 Msa1243160:CDS
CGCCGCGCCCACTGATGACA+GGG 0.562637 8_2:-28230671 None:intergenic
TGTGAGTCACGTTCAGGTGA+TGG 0.562870 8_2:-28229275 None:intergenic
TGAACTTGACAAGTTGATGA+AGG 0.563576 8_2:+28233379 Msa1243160:CDS
CTATGATTTGGAATATCTTG+AGG 0.568331 8_2:-28233614 None:intergenic
AAGATCTTTCTCCACCTAGA+CGG 0.569728 8_2:+28229534 Msa1243160:CDS
CGTTTCAACTGCCTCCGCGA+AGG 0.570309 8_2:-28229242 None:intergenic
TTTATGCAGACTTAAACAGA+TGG 0.575177 8_2:+28230647 Msa1243160:intron
ACCTTTACTAGATGTGCCAT+AGG 0.576652 8_2:-28233422 None:intergenic
TATCATGATATATCTGAGGA+TGG 0.581118 8_2:+28229086 Msa1243160:CDS
CTTAGATTTATATTTCGAAG+AGG 0.582321 8_2:+28228250 None:intergenic
TTAATCTTGTTAAACGTGAA+CGG 0.583139 8_2:-28228339 None:intergenic
GATGACTACGACGGCGAGGA+GGG 0.583613 8_2:-28229463 None:intergenic
GGAAGCTGAGGCTAAGCTAA+AGG 0.586960 8_2:+28232508 Msa1243160:CDS
ACGTGACTCACAACATTCTG+GGG 0.590623 8_2:+28229286 Msa1243160:CDS
GTTGAAGTATTCAATTCAGG+TGG 0.592694 8_2:-28229191 None:intergenic
CTCTGATCTCTGCGTTTACG+AGG 0.593733 8_2:-28229332 None:intergenic
CCATGTAAAGTATCTTGAGA+GGG 0.594609 8_2:-28229572 None:intergenic
TTTCGAACCCTCTGTTTACG+GGG 0.600987 8_2:-28229149 None:intergenic
GAAGAGGCTTGAGCAGCTGA+AGG 0.601622 8_2:+28229052 Msa1243160:CDS
AAAGGAAGGATGATTTGTTG+AGG 0.606723 8_2:+28229825 Msa1243160:CDS
CAGGAGATTAAAATAGAATG+GGG 0.607028 8_2:+28232464 Msa1243160:intron
TTGAAGTAAAGCGTATGAAG+AGG 0.608828 8_2:+28229036 Msa1243160:CDS
ATCTCCACCCCGTAAACAGA+GGG 0.611906 8_2:+28229142 Msa1243160:CDS
AATCATAGCTGGTTGAAGAG+AGG 0.614397 8_2:+28233629 Msa1243160:CDS
ACGGAGACGCCAGCATAGTG+TGG 0.617724 8_2:+28229622 Msa1243160:CDS
TCCATGTAAAGTATCTTGAG+AGG 0.617847 8_2:-28229573 None:intergenic
CAGATGGACCCTGTCATCAG+TGG 0.618582 8_2:+28230663 Msa1243160:CDS
GATATATCTGAGGATGGAAG+TGG 0.619295 8_2:+28229092 Msa1243160:CDS
GCCTGTTCTTCCAAACTTGG+GGG 0.620674 8_2:+28233556 Msa1243160:CDS
GCTGTATATCGTGATAACAA+AGG 0.621454 8_2:+28230699 Msa1243160:CDS
TGCTTATCATGATATATCTG+AGG 0.621619 8_2:+28229082 Msa1243160:CDS
TTGACAAGTTGATGAAGGAG+AGG 0.621996 8_2:+28233384 Msa1243160:CDS
AGATGGACCCTGTCATCAGT+GGG 0.624689 8_2:+28230664 Msa1243160:CDS
CTGATTTATCCCCTTCGCGG+AGG 0.628998 8_2:+28229231 Msa1243160:CDS
TGACAAGTTGATGAAGGAGA+GGG 0.629012 8_2:+28233385 Msa1243160:CDS
GATTAAAATAGAATGGGGCA+AGG 0.630157 8_2:+28232469 Msa1243160:CDS
TCATGACGACCCCGTCTAGG+TGG 0.631201 8_2:-28229545 None:intergenic
GTGATATGTCACCTCCTCGA+CGG 0.632218 8_2:+28229408 Msa1243160:CDS
CAGCTGTAGCTCGTGAACCA+AGG 0.632250 8_2:+28229360 Msa1243160:CDS
TAAGGTTGAAGTGTAGACAT+TGG 0.632286 8_2:+28228694 Msa1243160:five_prime_UTR
AGCACACGGTGGAGACGAAG+CGG 0.632914 8_2:+28228286 Msa1243160:five_prime_UTR
AGGCCGGGACGACACTGGGA+TGG 0.633533 8_2:+28233683 Msa1243160:CDS
TTTCAACTGCCTCCGCGAAG+GGG 0.634779 8_2:-28229240 None:intergenic
TGATGACTACGACGGCGAGG+AGG 0.636711 8_2:-28229464 None:intergenic
GGAGACGAAGCGGAAACCGG+AGG 0.638886 8_2:+28228296 Msa1243160:five_prime_UTR
TCCACCAAGGAAGAATTCAA+AGG 0.639037 8_2:+28229721 Msa1243160:CDS
TCTACAACTAACAAGCCAGT+TGG 0.639771 8_2:-28228830 None:intergenic
GAAAGTAGACGATAAGCCCA+AGG 0.642092 8_2:+28231203 Msa1243160:CDS
GATGGTGTTGATCGTAGTAA+TGG 0.643375 8_2:+28233701 Msa1243160:CDS
ATGACTACGACGGCGAGGAG+GGG 0.643467 8_2:-28229462 None:intergenic
AGGAGGACGCATTACCAAAG+AGG 0.643800 8_2:+28231161 Msa1243160:intron
CTATGCTGGCGTCTCCGTGG+GGG 0.645093 8_2:-28229617 None:intergenic
TGATCTCTGCGTTTACGAGG+AGG 0.653399 8_2:-28229329 None:intergenic
GCCCATCAAAACTCAGCACA+CGG 0.654753 8_2:+28228272 Msa1243160:five_prime_UTR
ATTATGGTAGGTGAGTACTA+AGG 0.656548 8_2:+28228676 Msa1243160:intron
ATGTAAAGTATCTTGAGAGG+GGG 0.657132 8_2:-28229570 None:intergenic
TTGTAGACGAAGATCCAACC+TGG 0.659373 8_2:+28228846 Msa1243160:CDS
ATGAAGGAGAGGGTAAGATG+GGG 0.660443 8_2:+28233395 Msa1243160:CDS
CTAACATGTTTCCGTCGAGG+AGG 0.668711 8_2:-28229419 None:intergenic
CATGTAAAGTATCTTGAGAG+GGG 0.672172 8_2:-28229571 None:intergenic
ATTAAAATAGAATGGGGCAA+GGG 0.673281 8_2:+28232470 Msa1243160:CDS
CATCTCCACCCCGTAAACAG+AGG 0.674052 8_2:+28229141 Msa1243160:CDS
TTACTAACATGTTTCCGTCG+AGG 0.680614 8_2:-28229422 None:intergenic
GTTTGATGACTACGACGGCG+AGG 0.689042 8_2:-28229467 None:intergenic
CGTGACTCACAACATTCTGG+GGG 0.694231 8_2:+28229287 Msa1243160:CDS
ACAGTGACCTCTCTCCACCA+AGG 0.703277 8_2:+28229708 Msa1243160:CDS
GATCTTTCTCCACCTAGACG+GGG 0.716893 8_2:+28229536 Msa1243160:CDS
CATCAAAACTCAGCACACGG+TGG 0.749282 8_2:+28228275 Msa1243160:five_prime_UTR
CAGATGTTTGATGACTACGA+CGG 0.750447 8_2:-28229472 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTGTAAGAAATTTTTTA+AGG - chr8_2:28230469-28230488 None:intergenic 10.0%
!!! TTGATAAAATTTAAAATAGA+GGG - chr8_2:28231314-28231333 None:intergenic 10.0%
!!! TTTGATAAAATTTAAAATAG+AGG - chr8_2:28231315-28231334 None:intergenic 10.0%
!!! ATTTAAGTCTATTATTTTTT+AGG + chr8_2:28231565-28231584 Msa1243160:intron 10.0%
!!! TAACATTATTTTATTAGATG+AGG + chr8_2:28228989-28229008 Msa1243160:intron 15.0%
!!! AATTTAATTCCTTAGTTTTT+AGG + chr8_2:28230204-28230223 Msa1243160:intron 15.0%
!!! ATTTAATTCCTTAGTTTTTA+GGG + chr8_2:28230205-28230224 Msa1243160:intron 15.0%
!!! CTTGACATATATATTTTTAT+TGG - chr8_2:28230524-28230543 None:intergenic 15.0%
!!! AATAGACTTAAATACAATTT+TGG - chr8_2:28231558-28231577 None:intergenic 15.0%
!! AATTTGTGTTTATGTAATAT+GGG + chr8_2:28231592-28231611 Msa1243160:intron 15.0%
!! ATCTAATAGATAAAAATAGA+GGG - chr8_2:28231967-28231986 None:intergenic 15.0%
!! AATCTAATAGATAAAAATAG+AGG - chr8_2:28231968-28231987 None:intergenic 15.0%
!!! GATTAGTGATTTAATTTCTA+TGG + chr8_2:28228398-28228417 Msa1243160:intron 20.0%
!!! ATAAGTTGATAACAACTTAT+AGG + chr8_2:28228459-28228478 Msa1243160:intron 20.0%
!! TCTAATAGAACTTAACATTA+TGG + chr8_2:28228660-28228679 Msa1243160:intron 20.0%
!! CATTAAGCAAGAATATTATT+GGG - chr8_2:28229912-28229931 None:intergenic 20.0%
!! AAAATAGAATTACAACGTTA+TGG - chr8_2:28229935-28229954 None:intergenic 20.0%
!!! TTATACACGAATTACAATTT+TGG - chr8_2:28230388-28230407 None:intergenic 20.0%
!! TATAAACAACTAACAAGAAA+AGG - chr8_2:28230420-28230439 None:intergenic 20.0%
!! AAGGAAAATAAAAAGAGAAA+TGG + chr8_2:28230879-28230898 Msa1243160:intron 20.0%
!! TCACTCAAAAAATAACTAAA+GGG - chr8_2:28231284-28231303 None:intergenic 20.0%
!! ATCACTCAAAAAATAACTAA+AGG - chr8_2:28231285-28231304 None:intergenic 20.0%
!! CATATTACATAAACACAAAT+TGG - chr8_2:28231593-28231612 None:intergenic 20.0%
!! CAATTTGTGTTTATGTAATA+TGG + chr8_2:28231591-28231610 Msa1243160:intron 20.0%
!! TTGTATATGTTAACATATTG+AGG + chr8_2:28231639-28231658 Msa1243160:intron 20.0%
!! ATGTTAATGAAGTACATATT+AGG + chr8_2:28231785-28231804 Msa1243160:intron 20.0%
!! CTATTAGATTATCTTTCATT+TGG + chr8_2:28231978-28231997 Msa1243160:intron 20.0%
!! ACACTTAATAAGAAAGTAAA+AGG - chr8_2:28232641-28232660 None:intergenic 20.0%
!!! GGATTTGATTTATAAATGAA+TGG + chr8_2:28232820-28232839 Msa1243160:intron 20.0%
! TTAATCTTGTTAAACGTGAA+CGG - chr8_2:28228342-28228361 None:intergenic 25.0%
! AATAAATTAACACCATCACA+AGG - chr8_2:28228561-28228580 None:intergenic 25.0%
! ATAGAACTTAACATTATGGT+AGG + chr8_2:28228664-28228683 Msa1243160:intron 25.0%
! AAAACAAGAAGAAAAAGAAG+AGG + chr8_2:28228792-28228811 Msa1243160:CDS 25.0%
! AATAATACAGAAACCAAAGA+CGG - chr8_2:28228926-28228945 None:intergenic 25.0%
! GATGTATCATTATTTGAAAG+TGG - chr8_2:28229125-28229144 None:intergenic 25.0%
! TACTTCAACTTCTAATAGAA+CGG + chr8_2:28229205-28229224 Msa1243160:CDS 25.0%
!! AGAAAAACAGGTTTAATTTC+TGG + chr8_2:28229773-28229792 Msa1243160:CDS 25.0%
! AATACATAAGAATATGTGCT+TGG - chr8_2:28229880-28229899 None:intergenic 25.0%
! GCATTAAGCAAGAATATTAT+TGG - chr8_2:28229913-28229932 None:intergenic 25.0%
!! TGTTAACTGTTTGTTGATTA+TGG + chr8_2:28230081-28230100 Msa1243160:intron 25.0%
!! CACTTGAATAAGAATTTTTC+TGG + chr8_2:28230107-28230126 Msa1243160:intron 25.0%
!!! TGTTTATAGCTTGTTTATTG+TGG + chr8_2:28230432-28230451 Msa1243160:intron 25.0%
! GATATAGATAAAGCTATTCT+GGG - chr8_2:28230585-28230604 None:intergenic 25.0%
! TGATATAGATAAAGCTATTC+TGG - chr8_2:28230586-28230605 None:intergenic 25.0%
! TCTATATCATTAATATGCCA+AGG + chr8_2:28230597-28230616 Msa1243160:intron 25.0%
! ATTAATATGCCAAGGAAATT+TGG + chr8_2:28230605-28230624 Msa1243160:intron 25.0%
! ATAATCAAACCAAATTTCCT+TGG - chr8_2:28230617-28230636 None:intergenic 25.0%
!! TATGTTTCTGTTCAATCTAT+TGG + chr8_2:28230748-28230767 Msa1243160:intron 25.0%
! TGACTTTAAATATTCCTCTT+TGG - chr8_2:28231178-28231197 None:intergenic 25.0%
!!! AATTTTTAGCACTAGATGAT+AGG + chr8_2:28231397-28231416 Msa1243160:intron 25.0%
!! ATTTCCTAGATGATTTTTGT+GGG + chr8_2:28231753-28231772 Msa1243160:intron 25.0%
! GACTACTAAATCTCATTTAA+TGG + chr8_2:28231915-28231934 Msa1243160:intron 25.0%
! AACTTACACTATATTCTGTA+TGG - chr8_2:28232204-28232223 None:intergenic 25.0%
! TAGAATAATATATGTTCGCA+AGG - chr8_2:28232275-28232294 None:intergenic 25.0%
!! TTGTTTTCTAGATGCAATAT+AGG - chr8_2:28232298-28232317 None:intergenic 25.0%
!! TCATGTTTTCCTAAGAAAAA+TGG + chr8_2:28232409-28232428 Msa1243160:intron 25.0%
! TTCAGGAGATTAAAATAGAA+TGG + chr8_2:28232462-28232481 Msa1243160:intron 25.0%
! TCAGGAGATTAAAATAGAAT+GGG + chr8_2:28232463-28232482 Msa1243160:intron 25.0%
! TTATACTGTCACAGAAAATT+AGG - chr8_2:28233195-28233214 None:intergenic 25.0%
! TATGTTACTGAAAATCTCTT+TGG + chr8_2:28233238-28233257 Msa1243160:intron 25.0%
! GAATTGATGTCATTGAAAAA+AGG + chr8_2:28233294-28233313 Msa1243160:intron 25.0%
! CAAAGACAATATAAGAGATA+GGG - chr8_2:28233335-28233354 None:intergenic 25.0%
! ACAAAGACAATATAAGAGAT+AGG - chr8_2:28233336-28233355 None:intergenic 25.0%
! TTAAGATGAATGTGTTTGAT+CGG + chr8_2:28233474-28233493 Msa1243160:intron 25.0%
GTTCACGTTTAACAAGATTA+AGG + chr8_2:28228341-28228360 Msa1243160:five_prime_UTR 30.0%
! AGCTTTTGTATAGGTTATTC+GGG - chr8_2:28228535-28228554 None:intergenic 30.0%
! GAGCTTTTGTATAGGTTATT+CGG - chr8_2:28228536-28228555 None:intergenic 30.0%
AATGGGATCTAACTCATTAA+AGG + chr8_2:28228727-28228746 Msa1243160:exon 30.0%
! TGTTTTTCTTGTCATCTTCA+GGG - chr8_2:28228778-28228797 None:intergenic 30.0%
!! TTGTTTTTCTTGTCATCTTC+AGG - chr8_2:28228779-28228798 None:intergenic 30.0%
! TTTTCTTCTTCAAGATCTAC+GGG - chr8_2:28228878-28228897 None:intergenic 30.0%
! GTTTTCTTCTTCAAGATCTA+CGG - chr8_2:28228879-28228898 None:intergenic 30.0%
TGCTTATCATGATATATCTG+AGG + chr8_2:28229082-28229101 Msa1243160:CDS 30.0%
TATCATGATATATCTGAGGA+TGG + chr8_2:28229086-28229105 Msa1243160:CDS 30.0%
! GAAGTTGAAGTATTCAATTC+AGG - chr8_2:28229197-28229216 None:intergenic 30.0%
ACTTCAACTTCTAATAGAAC+GGG + chr8_2:28229206-28229225 Msa1243160:CDS 30.0%
!!! AATTTTGATTTAGACGACCT+TGG - chr8_2:28229380-28229399 None:intergenic 30.0%
!!! GTCATATTTTTTTCTCCCAT+TGG - chr8_2:28229501-28229520 None:intergenic 30.0%
AAAATATGACACTTCTGACT+TGG + chr8_2:28229511-28229530 Msa1243160:CDS 30.0%
TCTGTTCATGAAAGAAAAAC+AGG + chr8_2:28229761-28229780 Msa1243160:CDS 30.0%
!! AACAGGTTTAATTTCTGGTA+AGG + chr8_2:28229778-28229797 Msa1243160:CDS 30.0%
CTTAAAAAACATGCTTGCTT+CGG - chr8_2:28229974-28229993 None:intergenic 30.0%
!!! AAGCAAGCATGTTTTTTAAG+TGG + chr8_2:28229974-28229993 Msa1243160:intron 30.0%
!!! GCATGTTTTTTAAGTGGTAA+TGG + chr8_2:28229980-28229999 Msa1243160:intron 30.0%
TTAGCAATCCCTAAAAACTA+AGG - chr8_2:28230216-28230235 None:intergenic 30.0%
!!! TTTTGCATGCTTGTTGTTTT+CGG - chr8_2:28230240-28230259 None:intergenic 30.0%
AACCTGAAGATATTAAGTAG+AGG + chr8_2:28230558-28230577 Msa1243160:intron 30.0%
ATCTGTTTAAGTCTGCATAA+AGG - chr8_2:28230648-28230667 None:intergenic 30.0%
TTTATGCAGACTTAAACAGA+TGG + chr8_2:28230647-28230666 Msa1243160:intron 30.0%
CTCAATATATCCCAATACAA+AGG - chr8_2:28230777-28230796 None:intergenic 30.0%
TCTAGTAAGTTATTGCTAAG+TGG + chr8_2:28230910-28230929 Msa1243160:intron 30.0%
CACAATGCCAAAATGTATAA+CGG - chr8_2:28230971-28230990 None:intergenic 30.0%
! ATTGTGCAGATTTTCAGTTT+GGG + chr8_2:28230985-28231004 Msa1243160:intron 30.0%
!!! ATACATGCACACTTTTTCTT+TGG + chr8_2:28231087-28231106 Msa1243160:intron 30.0%
!!! TACATGCACACTTTTTCTTT+GGG + chr8_2:28231088-28231107 Msa1243160:intron 30.0%
! TAAATCAAGCTGAATTTTGC+AGG + chr8_2:28231141-28231160 Msa1243160:intron 30.0%
! AAAGAATTTTGTAGAATGCG+AGG + chr8_2:28231473-28231492 Msa1243160:intron 30.0%
! GATTTCGATCTTGTAGTTTT+TGG - chr8_2:28231512-28231531 None:intergenic 30.0%
! ACATATTGAGGTGTTTCTTA+AGG + chr8_2:28231651-28231670 Msa1243160:intron 30.0%
! GATTTCCTAGATGATTTTTG+TGG + chr8_2:28231752-28231771 Msa1243160:intron 30.0%
GGAGACTAAAAACTAACTAA+AGG - chr8_2:28231946-28231965 None:intergenic 30.0%
AAACCATTAGAGAGAAAGTT+GGG - chr8_2:28232091-28232110 None:intergenic 30.0%
TAAACCATTAGAGAGAAAGT+TGG - chr8_2:28232092-28232111 None:intergenic 30.0%
CAAATGATATTCAAGACAGT+AGG + chr8_2:28232145-28232164 Msa1243160:intron 30.0%
TCAGTTAACATATGTGTACA+TGG - chr8_2:28232234-28232253 None:intergenic 30.0%
! AAAATGGCAAGTTGAGTTAT+TGG + chr8_2:28232425-28232444 Msa1243160:intron 30.0%
CAGGAGATTAAAATAGAATG+GGG + chr8_2:28232464-28232483 Msa1243160:intron 30.0%
ATTAAAATAGAATGGGGCAA+GGG + chr8_2:28232470-28232489 Msa1243160:CDS 30.0%
! TTTTTCTTCTTCTGTATACC+TGG - chr8_2:28232570-28232589 None:intergenic 30.0%
TATCCTCGATAAACCTAAAA+TGG + chr8_2:28232702-28232721 Msa1243160:intron 30.0%
!!! ATACCATTTTAGGTTTATCG+AGG - chr8_2:28232708-28232727 None:intergenic 30.0%
! TTGTTGAGGAATACCATTTT+AGG - chr8_2:28232718-28232737 None:intergenic 30.0%
AAAATTTACCGAGTGCAAAT+TGG - chr8_2:28232767-28232786 None:intergenic 30.0%
! AATTTGCACTCGGTAAATTT+TGG + chr8_2:28232766-28232785 Msa1243160:intron 30.0%
! GATTAAAGCTTTAATCTGGA+AGG - chr8_2:28232907-28232926 None:intergenic 30.0%
!! AGTGGATTAAAGCTTTAATC+TGG - chr8_2:28232911-28232930 None:intergenic 30.0%
! AAGAACGTTTTACTCAAAAG+TGG - chr8_2:28233063-28233082 None:intergenic 30.0%
GAGTTTACATTCATTACAGA+TGG - chr8_2:28233149-28233168 None:intergenic 30.0%
! CTATGATTTGGAATATCTTG+AGG - chr8_2:28233617-28233636 None:intergenic 30.0%
AAGATATTCCAAATCATAGC+TGG + chr8_2:28233618-28233637 Msa1243160:CDS 30.0%
CTCTAAATTCGTAGCTTATG+AGG + chr8_2:28228376-28228395 Msa1243160:intron 35.0%
! ACAAGGAAGAGCTTTTGTAT+AGG - chr8_2:28228544-28228563 None:intergenic 35.0%
ATTATGGTAGGTGAGTACTA+AGG + chr8_2:28228676-28228695 Msa1243160:intron 35.0%
TAAGGTTGAAGTGTAGACAT+TGG + chr8_2:28228694-28228713 Msa1243160:five_prime_UTR 35.0%
! ACATTGGTGGCTTAAACAAT+GGG + chr8_2:28228710-28228729 Msa1243160:exon 35.0%
GAAAACGATGAAAAGTTGTC+AGG + chr8_2:28228893-28228912 Msa1243160:CDS 35.0%
TCAATGTCTTCGTCAACTAT+CGG - chr8_2:28229020-28229039 None:intergenic 35.0%
TTGAAGTAAAGCGTATGAAG+AGG + chr8_2:28229036-28229055 Msa1243160:CDS 35.0%
! GTTGAAGTATTCAATTCAGG+TGG - chr8_2:28229194-28229213 None:intergenic 35.0%
ATCAAACATCTGGATCCAAT+GGG + chr8_2:28229483-28229502 Msa1243160:CDS 35.0%
! ATGTAAAGTATCTTGAGAGG+GGG - chr8_2:28229573-28229592 None:intergenic 35.0%
! CATGTAAAGTATCTTGAGAG+GGG - chr8_2:28229574-28229593 None:intergenic 35.0%
! CCATGTAAAGTATCTTGAGA+GGG - chr8_2:28229575-28229594 None:intergenic 35.0%
! TCCATGTAAAGTATCTTGAG+AGG - chr8_2:28229576-28229595 None:intergenic 35.0%
ATCTGATGTTTCTCATCGTT+CGG + chr8_2:28229658-28229677 Msa1243160:CDS 35.0%
! AGCTGTTTCACATCAATCTT+TGG + chr8_2:28229685-28229704 Msa1243160:CDS 35.0%
AACTCCTTTGAATTCTTCCT+TGG - chr8_2:28229728-28229747 None:intergenic 35.0%
TTTCTTTCATGAACAGATGC+TGG - chr8_2:28229758-28229777 None:intergenic 35.0%
GAGAAGAGATTGACAGAAAA+AGG + chr8_2:28229807-28229826 Msa1243160:CDS 35.0%
AGAGATTGACAGAAAAAGGA+AGG + chr8_2:28229811-28229830 Msa1243160:CDS 35.0%
!! AAAGGAAGGATGATTTGTTG+AGG + chr8_2:28229825-28229844 Msa1243160:CDS 35.0%
GAAAACAACAAGCATGCAAA+AGG + chr8_2:28230239-28230258 Msa1243160:intron 35.0%
!! TAGTTCTGAGGAATATCAAC+CGG + chr8_2:28230272-28230291 Msa1243160:intron 35.0%
AGCTAATCTAAATGTTGCTC+CGG - chr8_2:28230294-28230313 None:intergenic 35.0%
GTCCTCTACTTAATATCTTC+AGG - chr8_2:28230563-28230582 None:intergenic 35.0%
GCTGTATATCGTGATAACAA+AGG + chr8_2:28230699-28230718 Msa1243160:CDS 35.0%
TCTATTGGATGCCTTTGTAT+TGG + chr8_2:28230763-28230782 Msa1243160:intron 35.0%
CTATTGGATGCCTTTGTATT+GGG + chr8_2:28230764-28230783 Msa1243160:intron 35.0%
GGATATATTGAGAGAAAGAC+CGG + chr8_2:28230785-28230804 Msa1243160:intron 35.0%
GATATATTGAGAGAAAGACC+GGG + chr8_2:28230786-28230805 Msa1243160:intron 35.0%
ATATATTGAGAGAAAGACCG+GGG + chr8_2:28230787-28230806 Msa1243160:intron 35.0%
AGTTTAGTGTCTGTTAGGAT+AGG + chr8_2:28230843-28230862 Msa1243160:intron 35.0%
AGTAAGTTATTGCTAAGTGG+AGG + chr8_2:28230913-28230932 Msa1243160:intron 35.0%
GTAAGTTATTGCTAAGTGGA+GGG + chr8_2:28230914-28230933 Msa1243160:intron 35.0%
! AGGGATTCCGTTATACATTT+TGG + chr8_2:28230961-28230980 Msa1243160:intron 35.0%
! CATTGTGCAGATTTTCAGTT+TGG + chr8_2:28230984-28231003 Msa1243160:intron 35.0%
TGCAGTCAACAAAATACCTT+GGG - chr8_2:28231222-28231241 None:intergenic 35.0%
ATGCAGTCAACAAAATACCT+TGG - chr8_2:28231223-28231242 None:intergenic 35.0%
GTAACCCACAAAAATCATCT+AGG - chr8_2:28231760-28231779 None:intergenic 35.0%
AAAGATGGTAGTCTCATGTT+AGG - chr8_2:28232058-28232077 None:intergenic 35.0%
! TGAGACTACCATCTTTTCTA+AGG + chr8_2:28232062-28232081 Msa1243160:intron 35.0%
TCATACTTCAGTTACAGCAT+AGG - chr8_2:28232353-28232372 None:intergenic 35.0%
!!! CTCAACTTGCCATTTTTCTT+AGG - chr8_2:28232421-28232440 None:intergenic 35.0%
TGGCTATCTTCTTAACTTTC+AGG + chr8_2:28232445-28232464 Msa1243160:intron 35.0%
GATTAAAATAGAATGGGGCA+AGG + chr8_2:28232469-28232488 Msa1243160:CDS 35.0%
AAAGGAACTAGAAGTTGAGA+AGG + chr8_2:28232526-28232545 Msa1243160:CDS 35.0%
TCAGTCTTAAGTCAACAAAG+TGG - chr8_2:28232929-28232948 None:intergenic 35.0%
! TAGTCTATCACATTTTGCAC+TGG + chr8_2:28232998-28233017 Msa1243160:intron 35.0%
! AACGTTTTACTCAAAAGTGG+AGG - chr8_2:28233060-28233079 None:intergenic 35.0%
ATAGACTTGGAAGAAAGCAA+TGG - chr8_2:28233087-28233106 None:intergenic 35.0%
ATCAGGTTCAACAATAGACT+TGG - chr8_2:28233100-28233119 None:intergenic 35.0%
TCATGATAAACACCAACATC+AGG - chr8_2:28233274-28233293 None:intergenic 35.0%
CAATATAAGAGATAGGGAGA+AGG - chr8_2:28233329-28233348 None:intergenic 35.0%
TTCATCAACTTGTCAAGTTC+AGG - chr8_2:28233380-28233399 None:intergenic 35.0%
!! TGAACTTGACAAGTTGATGA+AGG + chr8_2:28233379-28233398 Msa1243160:CDS 35.0%
AGTGATAAAATGAGGGAATC+TGG + chr8_2:28233581-28233600 Msa1243160:CDS 35.0%
TTCAGAATCACTTGTGCCAT+AGG + chr8_2:28228498-28228517 Msa1243160:intron 40.0%
ATCACTTGTGCCATAGGAAT+AGG + chr8_2:28228504-28228523 Msa1243160:intron 40.0%
TCGGGTTTATCCTATTCCTA+TGG - chr8_2:28228517-28228536 None:intergenic 40.0%
ACAAAAGCTCTTCCTTGTGA+TGG + chr8_2:28228546-28228565 Msa1243160:intron 40.0%
! GACATTGGTGGCTTAAACAA+TGG + chr8_2:28228709-28228728 Msa1243160:exon 40.0%
AAAACTCAACCACAACCAAC+TGG + chr8_2:28228815-28228834 Msa1243160:CDS 40.0%
TCTACAACTAACAAGCCAGT+TGG - chr8_2:28228833-28228852 None:intergenic 40.0%
GATATATCTGAGGATGGAAG+TGG + chr8_2:28229092-28229111 Msa1243160:CDS 40.0%
ATTTCGAACCCTCTGTTTAC+GGG - chr8_2:28229153-28229172 None:intergenic 40.0%
CATTTCGAACCCTCTGTTTA+CGG - chr8_2:28229154-28229173 None:intergenic 40.0%
GTATTCAATTCAGGTGGTTC+TGG - chr8_2:28229188-28229207 None:intergenic 40.0%
AACGTGACTCACAACATTCT+GGG + chr8_2:28229285-28229304 Msa1243160:CDS 40.0%
TTACTAACATGTTTCCGTCG+AGG - chr8_2:28229425-28229444 None:intergenic 40.0%
! CAGATGTTTGATGACTACGA+CGG - chr8_2:28229475-28229494 None:intergenic 40.0%
CATCAAACATCTGGATCCAA+TGG + chr8_2:28229482-28229501 Msa1243160:CDS 40.0%
AAGATCTTTCTCCACCTAGA+CGG + chr8_2:28229534-28229553 Msa1243160:CDS 40.0%
CCCTCTCAAGATACTTTACA+TGG + chr8_2:28229572-28229591 Msa1243160:CDS 40.0%
TCCACCAAGGAAGAATTCAA+AGG + chr8_2:28229721-28229740 Msa1243160:CDS 40.0%
TCCTTTGAATTCTTCCTTGG+TGG - chr8_2:28229725-28229744 None:intergenic 40.0%
TTCATGAACAGATGCTGGAA+TGG - chr8_2:28229753-28229772 None:intergenic 40.0%
ACCACAAAGTTCAGCAACAA+AGG + chr8_2:28230057-28230076 Msa1243160:intron 40.0%
!! ATGACTTCTGAGACTTAGCA+AGG - chr8_2:28230154-28230173 None:intergenic 40.0%
! GGTATAGACTAGTAGTTCTG+AGG + chr8_2:28230260-28230279 Msa1243160:intron 40.0%
TATATTGAGAGAAAGACCGG+GGG + chr8_2:28230788-28230807 Msa1243160:intron 40.0%
CCTAACAGACACTAAACTTC+AGG - chr8_2:28230841-28230860 None:intergenic 40.0%
CCTGAAGTTTAGTGTCTGTT+AGG + chr8_2:28230838-28230857 Msa1243160:intron 40.0%
TTAGTGTCTGTTAGGATAGG+AGG + chr8_2:28230846-28230865 Msa1243160:intron 40.0%
! ATCAAGCTGAATTTTGCAGG+AGG + chr8_2:28231144-28231163 Msa1243160:intron 40.0%
CATCCAGATATGAAACACAG+CGG - chr8_2:28231255-28231274 None:intergenic 40.0%
TCGCTCAAAGCTAGAATTAG+AGG + chr8_2:28231530-28231549 Msa1243160:intron 40.0%
CGCTCAAAGCTAGAATTAGA+GGG + chr8_2:28231531-28231550 Msa1243160:intron 40.0%
! AAGGCTTTGGTTGTTGATGT+TGG - chr8_2:28231828-28231847 None:intergenic 40.0%
TTGGGACACCTTAGAAAAGA+TGG - chr8_2:28232073-28232092 None:intergenic 40.0%
TGTCCCAACTTTCTCTCTAA+TGG + chr8_2:28232085-28232104 Msa1243160:intron 40.0%
TATCGAGGATATGATCAAGC+AGG - chr8_2:28232693-28232712 None:intergenic 40.0%
GTAGACAACCAATTTGCACT+CGG + chr8_2:28232756-28232775 Msa1243160:intron 40.0%
!! AAATTTTGGCACCTAGGTTC+TGG + chr8_2:28232780-28232799 Msa1243160:intron 40.0%
!! AATTTTGGCACCTAGGTTCT+GGG + chr8_2:28232781-28232800 Msa1243160:intron 40.0%
! TGTTACTTCACCCTCTTATC+TGG + chr8_2:28233027-28233046 Msa1243160:intron 40.0%
GTTACTTCACCCTCTTATCT+GGG + chr8_2:28233028-28233047 Msa1243160:intron 40.0%
TTACTCAAAAGTGGAGGTGA+GGG - chr8_2:28233054-28233073 None:intergenic 40.0%
TTTACTCAAAAGTGGAGGTG+AGG - chr8_2:28233055-28233074 None:intergenic 40.0%
AACAGCAAACAACGCATATC+AGG - chr8_2:28233117-28233136 None:intergenic 40.0%
GGAAAACAAAGTCCTGATGT+TGG + chr8_2:28233259-28233278 Msa1243160:intron 40.0%
!! TTGACAAGTTGATGAAGGAG+AGG + chr8_2:28233384-28233403 Msa1243160:CDS 40.0%
!! TGACAAGTTGATGAAGGAGA+GGG + chr8_2:28233385-28233404 Msa1243160:CDS 40.0%
TCCTATGGCACATCTAGTAA+AGG + chr8_2:28233421-28233440 Msa1243160:CDS 40.0%
ACCTTTACTAGATGTGCCAT+AGG - chr8_2:28233425-28233444 None:intergenic 40.0%
TTATCACTATCCCCCAAGTT+TGG - chr8_2:28233569-28233588 None:intergenic 40.0%
TGGGGGATAGTGATAAAATG+AGG + chr8_2:28233573-28233592 Msa1243160:CDS 40.0%
GGGGGATAGTGATAAAATGA+GGG + chr8_2:28233574-28233593 Msa1243160:CDS 40.0%
CTCTTCAACCAGCTATGATT+TGG - chr8_2:28233629-28233648 None:intergenic 40.0%
AATCATAGCTGGTTGAAGAG+AGG + chr8_2:28233629-28233648 Msa1243160:CDS 40.0%
!! GATGGTGTTGATCGTAGTAA+TGG + chr8_2:28233701-28233720 Msa1243160:CDS 40.0%
!! ACCGTGTGCTGAGTTTTGAT+GGG - chr8_2:28228276-28228295 None:intergenic 45.0%
TGCAAAACCCTTTCTTCCTC+CGG - chr8_2:28228315-28228334 None:intergenic 45.0%
GGTTGAAGTGTAGACATTGG+TGG + chr8_2:28228697-28228716 Msa1243160:five_prime_UTR 45.0%
ACTAACAAGCCAGTTGGTTG+TGG - chr8_2:28228827-28228846 None:intergenic 45.0%
TTGTAGACGAAGATCCAACC+TGG + chr8_2:28228846-28228865 Msa1243160:CDS 45.0%
GTCAGGTATGATACCGTCTT+TGG + chr8_2:28228910-28228929 Msa1243160:intron 45.0%
TATCTGAGGATGGAAGTGGT+TGG + chr8_2:28229096-28229115 Msa1243160:CDS 45.0%
ATCTGAGGATGGAAGTGGTT+GGG + chr8_2:28229097-28229116 Msa1243160:CDS 45.0%
TTTCGAACCCTCTGTTTACG+GGG - chr8_2:28229152-28229171 None:intergenic 45.0%
!! AATTCAGGTGGTTCTGGTGA+AGG - chr8_2:28229182-28229201 None:intergenic 45.0%
GAATGTTGTGAGTCACGTTC+AGG - chr8_2:28229284-28229303 None:intergenic 45.0%
GAACGTGACTCACAACATTC+TGG + chr8_2:28229284-28229303 Msa1243160:CDS 45.0%
ACGTGACTCACAACATTCTG+GGG + chr8_2:28229286-28229305 Msa1243160:CDS 45.0%
CGTCGTAGTCATCAAACATC+TGG + chr8_2:28229473-28229492 Msa1243160:CDS 45.0%
AGATCTTTCTCCACCTAGAC+GGG + chr8_2:28229535-28229554 Msa1243160:CDS 45.0%
AATTCTTCCTTGGTGGAGAG+AGG - chr8_2:28229718-28229737 None:intergenic 45.0%
GCCTTTGTTGCTGAACTTTG+TGG - chr8_2:28230061-28230080 None:intergenic 45.0%
TGTCTGTTAGGATAGGAGGA+GGG + chr8_2:28230850-28230869 Msa1243160:intron 45.0%
GATAGGAGGAGGGTTAAGAA+AGG + chr8_2:28230860-28230879 Msa1243160:intron 45.0%
!! ACGAGGAGCTTTGGGATTAT+AGG + chr8_2:28231027-28231046 Msa1243160:intron 45.0%
GAAAGTAGACGATAAGCCCA+AGG + chr8_2:28231203-28231222 Msa1243160:CDS 45.0%
GTACCGCTGTGTTTCATATC+TGG + chr8_2:28231249-28231268 Msa1243160:intron 45.0%
CACATGGTTGGAAAAGGCTT+TGG - chr8_2:28231841-28231860 None:intergenic 45.0%
! CAAAGCCTTTTCCAACCATG+TGG + chr8_2:28231839-28231858 Msa1243160:intron 45.0%
TGACTCCACATGGTTGGAAA+AGG - chr8_2:28231847-28231866 None:intergenic 45.0%
! TGTAACTGACTCCACATGGT+TGG - chr8_2:28231853-28231872 None:intergenic 45.0%
ACCATGTGGAGTCAGTTACA+TGG + chr8_2:28231853-28231872 Msa1243160:intron 45.0%
! TCCATGTAACTGACTCCACA+TGG - chr8_2:28231857-28231876 None:intergenic 45.0%
! AGAAGGAAAAGCCTTTTGCG+CGG + chr8_2:28232543-28232562 Msa1243160:CDS 45.0%
!! AGCTCTAGCTCTAGTTGTTG+AGG - chr8_2:28232732-28232751 None:intergenic 45.0%
!! CTCGGTAAATTTTGGCACCT+AGG + chr8_2:28232774-28232793 Msa1243160:intron 45.0%
TGATGAAGGAGAGGGTAAGA+TGG + chr8_2:28233393-28233412 Msa1243160:CDS 45.0%
GATGAAGGAGAGGGTAAGAT+GGG + chr8_2:28233394-28233413 Msa1243160:CDS 45.0%
ATGAAGGAGAGGGTAAGATG+GGG + chr8_2:28233395-28233414 Msa1243160:CDS 45.0%
AAGTTTGGAAGAACAGGCTC+TGG - chr8_2:28233554-28233573 None:intergenic 45.0%
AGAGCCTGTTCTTCCAAACT+TGG + chr8_2:28233553-28233572 Msa1243160:CDS 45.0%
GAGCCTGTTCTTCCAAACTT+GGG + chr8_2:28233554-28233573 Msa1243160:CDS 45.0%
AGCCTGTTCTTCCAAACTTG+GGG + chr8_2:28233555-28233574 Msa1243160:CDS 45.0%
GTTTAGAAGCTGCTCCAAAC+CGG + chr8_2:28233651-28233670 Msa1243160:CDS 45.0%
GCCCATCAAAACTCAGCACA+CGG + chr8_2:28228272-28228291 Msa1243160:five_prime_UTR 50.0%
!! CACCGTGTGCTGAGTTTTGA+TGG - chr8_2:28228277-28228296 None:intergenic 50.0%
CATCAAAACTCAGCACACGG+TGG + chr8_2:28228275-28228294 Msa1243160:five_prime_UTR 50.0%
ATCTCCACCCCGTAAACAGA+GGG + chr8_2:28229142-28229161 Msa1243160:CDS 50.0%
!! GTGCTGATTTATCCCCTTCG+CGG + chr8_2:28229228-28229247 Msa1243160:CDS 50.0%
TGTGAGTCACGTTCAGGTGA+TGG - chr8_2:28229278-28229297 None:intergenic 50.0%
CGTGACTCACAACATTCTGG+GGG + chr8_2:28229287-28229306 Msa1243160:CDS 50.0%
TGATCTCTGCGTTTACGAGG+AGG - chr8_2:28229332-28229351 None:intergenic 50.0%
CTCTGATCTCTGCGTTTACG+AGG - chr8_2:28229335-28229354 None:intergenic 50.0%
GTGATATGTCACCTCCTCGA+CGG + chr8_2:28229408-28229427 Msa1243160:CDS 50.0%
CTAACATGTTTCCGTCGAGG+AGG - chr8_2:28229422-28229441 None:intergenic 50.0%
GATCTTTCTCCACCTAGACG+GGG + chr8_2:28229536-28229555 Msa1243160:CDS 50.0%
TCGATCTTGCCACACTATGC+TGG - chr8_2:28229634-28229653 None:intergenic 50.0%
AGATGGACCCTGTCATCAGT+GGG + chr8_2:28230664-28230683 Msa1243160:CDS 50.0%
GTGTCTGTTAGGATAGGAGG+AGG + chr8_2:28230849-28230868 Msa1243160:intron 50.0%
! GAGAGTACACCATCTCTACG+AGG + chr8_2:28231010-28231029 Msa1243160:intron 50.0%
ACCATCTCTACGAGGAGCTT+TGG + chr8_2:28231018-28231037 Msa1243160:intron 50.0%
CCATCTCTACGAGGAGCTTT+GGG + chr8_2:28231019-28231038 Msa1243160:intron 50.0%
AGGAGGACGCATTACCAAAG+AGG + chr8_2:28231161-28231180 Msa1243160:intron 50.0%
GGAAGCTGAGGCTAAGCTAA+AGG + chr8_2:28232508-28232527 Msa1243160:CDS 50.0%
ATTCACACAGCCCAGAACCT+AGG - chr8_2:28232794-28232813 None:intergenic 50.0%
!! AGGTTCTGGGCTGTGTGAAT+TGG + chr8_2:28232794-28232813 Msa1243160:intron 50.0%
CTGGGCTGTGTGAATTGGTT+TGG + chr8_2:28232799-28232818 Msa1243160:intron 50.0%
GGTAAGATGGGGTGATCCTA+TGG + chr8_2:28233406-28233425 Msa1243160:CDS 50.0%
GCCTGTTCTTCCAAACTTGG+GGG + chr8_2:28233556-28233575 Msa1243160:CDS 50.0%
TCCCCCAAGTTTGGAAGAAC+AGG - chr8_2:28233560-28233579 None:intergenic 50.0%
AAGCTGCTCCAAACCGGTAT+GGG + chr8_2:28233657-28233676 Msa1243160:CDS 50.0%
CTCCAAACCGGTATGGGATA+AGG + chr8_2:28233663-28233682 Msa1243160:CDS 50.0%
AAACCGGTATGGGATAAGGC+CGG + chr8_2:28233667-28233686 Msa1243160:CDS 50.0%
AGCGGAAACCGGAGGAAGAA+AGG + chr8_2:28228304-28228323 Msa1243160:five_prime_UTR 55.0%
GCGGAAACCGGAGGAAGAAA+GGG + chr8_2:28228305-28228324 Msa1243160:five_prime_UTR 55.0%
AAGATCTACGGGCTTCTGCC+AGG - chr8_2:28228867-28228886 None:intergenic 55.0%
GAAGAGGCTTGAGCAGCTGA+AGG + chr8_2:28229052-28229071 Msa1243160:CDS 55.0%
CATCTCCACCCCGTAAACAG+AGG + chr8_2:28229141-28229160 Msa1243160:CDS 55.0%
CTGATTTATCCCCTTCGCGG+AGG + chr8_2:28229231-28229250 Msa1243160:CDS 55.0%
TTTCAACTGCCTCCGCGAAG+GGG - chr8_2:28229243-28229262 None:intergenic 55.0%
GTTTCAACTGCCTCCGCGAA+GGG - chr8_2:28229244-28229263 None:intergenic 55.0%
CAGCTGTAGCTCGTGAACCA+AGG + chr8_2:28229360-28229379 Msa1243160:CDS 55.0%
! GTTTGATGACTACGACGGCG+AGG - chr8_2:28229470-28229489 None:intergenic 55.0%
GAATCATGACGACCCCGTCT+AGG - chr8_2:28229551-28229570 None:intergenic 55.0%
CGTCTGATCTTTCACCCCCA+CGG + chr8_2:28229603-28229622 Msa1243160:CDS 55.0%
ACAGTGACCTCTCTCCACCA+AGG + chr8_2:28229708-28229727 Msa1243160:CDS 55.0%
CAGATGGACCCTGTCATCAG+TGG + chr8_2:28230663-28230682 Msa1243160:CDS 55.0%
!! CAAGGAACCAATGGGCTGAG+AGG + chr8_2:28230811-28230830 Msa1243160:intron 55.0%
!! GAACCAATGGGCTGAGAGGA+AGG + chr8_2:28230815-28230834 Msa1243160:intron 55.0%
! AGTGGAGGGAGTACATGTGC+AGG + chr8_2:28230928-28230947 Msa1243160:intron 55.0%
! GTGGAGGGAGTACATGTGCA+GGG + chr8_2:28230929-28230948 Msa1243160:intron 55.0%
! AGTACATGTGCAGGGAGTGC+AGG + chr8_2:28230937-28230956 Msa1243160:intron 55.0%
! ATGTGCAGGGAGTGCAGGAA+GGG + chr8_2:28230942-28230961 Msa1243160:intron 55.0%
CCCAAAGCTCCTCGTAGAGA+TGG - chr8_2:28231022-28231041 None:intergenic 55.0%
GCAAGGGCCTTGCTCAAAAG+CGG + chr8_2:28232486-28232505 Msa1243160:CDS 55.0%
CAAGGGCCTTGCTCAAAAGC+GGG + chr8_2:28232487-28232506 Msa1243160:CDS 55.0%
!! CAGCTTCCCGCTTTTGAGCA+AGG - chr8_2:28232496-28232515 None:intergenic 55.0%
TGCTCAAAAGCGGGAAGCTG+AGG + chr8_2:28232496-28232515 Msa1243160:CDS 55.0%
! AAAAGCCTTTTGCGCGGACC+AGG + chr8_2:28232549-28232568 Msa1243160:CDS 55.0%
GTATACCTGGTCCGCGCAAA+AGG - chr8_2:28232557-28232576 None:intergenic 55.0%
AGGTGAGGGCCCAGATAAGA+GGG - chr8_2:28233040-28233059 None:intergenic 55.0%
GAAGCTGCTCCAAACCGGTA+TGG + chr8_2:28233656-28233675 Msa1243160:CDS 55.0%
! GGCCTTATCCCATACCGGTT+TGG - chr8_2:28233668-28233687 None:intergenic 55.0%
AACCGGTATGGGATAAGGCC+GGG + chr8_2:28233668-28233687 Msa1243160:CDS 55.0%
AGCACACGGTGGAGACGAAG+CGG + chr8_2:28228286-28228305 Msa1243160:five_prime_UTR 60.0%
GGTGGAGACGAAGCGGAAAC+CGG + chr8_2:28228293-28228312 Msa1243160:five_prime_UTR 60.0%
TCTACGGGCTTCTGCCAGGT+TGG - chr8_2:28228863-28228882 None:intergenic 60.0%
CGAACCCTCTGTTTACGGGG+TGG - chr8_2:28229149-28229168 None:intergenic 60.0%
CGTTTCAACTGCCTCCGCGA+AGG - chr8_2:28229245-28229264 None:intergenic 60.0%
CGGCGAGGAGGGGAAATATC+TGG - chr8_2:28229455-28229474 None:intergenic 60.0%
ATGACTACGACGGCGAGGAG+GGG - chr8_2:28229465-28229484 None:intergenic 60.0%
GATGACTACGACGGCGAGGA+GGG - chr8_2:28229466-28229485 None:intergenic 60.0%
TGATGACTACGACGGCGAGG+AGG - chr8_2:28229467-28229486 None:intergenic 60.0%
TCATGACGACCCCGTCTAGG+TGG - chr8_2:28229548-28229567 None:intergenic 60.0%
ACTATGCTGGCGTCTCCGTG+GGG - chr8_2:28229621-28229640 None:intergenic 60.0%
CACTATGCTGGCGTCTCCGT+GGG - chr8_2:28229622-28229641 None:intergenic 60.0%
ACACTATGCTGGCGTCTCCG+TGG - chr8_2:28229623-28229642 None:intergenic 60.0%
ACGGAGACGCCAGCATAGTG+TGG + chr8_2:28229622-28229641 Msa1243160:CDS 60.0%
TGAGAGAAAGACCGGGGGCA+AGG + chr8_2:28230793-28230812 Msa1243160:intron 60.0%
ACCGGGGGCAAGGAACCAAT+GGG + chr8_2:28230803-28230822 Msa1243160:intron 60.0%
AGGCCTTCCTCTCAGCCCAT+TGG - chr8_2:28230821-28230840 None:intergenic 60.0%
! CATGTGCAGGGAGTGCAGGA+AGG + chr8_2:28230941-28230960 Msa1243160:intron 60.0%
GAGGTGAGGGCCCAGATAAG+AGG - chr8_2:28233041-28233060 None:intergenic 60.0%
! GTCCCGGCCTTATCCCATAC+CGG - chr8_2:28233673-28233692 None:intergenic 60.0%
GATAAGGCCGGGACGACACT+GGG + chr8_2:28233679-28233698 Msa1243160:CDS 60.0%
ACACCATCCCAGTGTCGTCC+CGG - chr8_2:28233689-28233708 None:intergenic 60.0%
GGAGACGAAGCGGAAACCGG+AGG + chr8_2:28228296-28228315 Msa1243160:five_prime_UTR 65.0%
CTATGCTGGCGTCTCCGTGG+GGG - chr8_2:28229620-28229639 None:intergenic 65.0%
GACCCTGTCATCAGTGGGCG+CGG + chr8_2:28230669-28230688 Msa1243160:CDS 65.0%
GACCGGGGGCAAGGAACCAA+TGG + chr8_2:28230802-28230821 Msa1243160:intron 65.0%
!! GCCCATTGGTTCCTTGCCCC+CGG - chr8_2:28230807-28230826 None:intergenic 65.0%
GGATAAGGCCGGGACGACAC+TGG + chr8_2:28233678-28233697 Msa1243160:CDS 65.0%
CGCCGCGCCCACTGATGACA+GGG - chr8_2:28230674-28230693 None:intergenic 70.0%
AGGCCGGGACGACACTGGGA+TGG + chr8_2:28233683-28233702 Msa1243160:CDS 70.0%
GCGCCGCGCCCACTGATGAC+AGG - chr8_2:28230675-28230694 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 28228256 28233727 28228256 ID=Msa1243160;Name=Msa1243160
chr8_2 mRNA 28228256 28233727 28228256 ID=Msa1243160-mRNA-1;Parent=Msa1243160;Name=Msa1243160-mRNA-1;_AED=0.06;_eAED=0.06;_QI=149|1|0.87|1|0.85|0.75|8|0|505
chr8_2 exon 28228256 28228362 28228256 ID=Msa1243160-mRNA-1:exon:9911;Parent=Msa1243160-mRNA-1
chr8_2 exon 28228686 28228914 28228686 ID=Msa1243160-mRNA-1:exon:9912;Parent=Msa1243160-mRNA-1
chr8_2 exon 28229006 28229846 28229006 ID=Msa1243160-mRNA-1:exon:9913;Parent=Msa1243160-mRNA-1
chr8_2 exon 28230656 28230720 28230656 ID=Msa1243160-mRNA-1:exon:9914;Parent=Msa1243160-mRNA-1
chr8_2 exon 28231163 28231224 28231163 ID=Msa1243160-mRNA-1:exon:9915;Parent=Msa1243160-mRNA-1
chr8_2 exon 28232467 28232570 28232467 ID=Msa1243160-mRNA-1:exon:9916;Parent=Msa1243160-mRNA-1
chr8_2 exon 28233370 28233442 28233370 ID=Msa1243160-mRNA-1:exon:9917;Parent=Msa1243160-mRNA-1
chr8_2 exon 28233542 28233727 28233542 ID=Msa1243160-mRNA-1:exon:9918;Parent=Msa1243160-mRNA-1
chr8_2 five_prime_UTR 28228256 28228362 28228256 ID=Msa1243160-mRNA-1:five_prime_utr;Parent=Msa1243160-mRNA-1
chr8_2 five_prime_UTR 28228686 28228727 28228686 ID=Msa1243160-mRNA-1:five_prime_utr;Parent=Msa1243160-mRNA-1
chr8_2 CDS 28228728 28228914 28228728 ID=Msa1243160-mRNA-1:cds;Parent=Msa1243160-mRNA-1
chr8_2 CDS 28229006 28229846 28229006 ID=Msa1243160-mRNA-1:cds;Parent=Msa1243160-mRNA-1
chr8_2 CDS 28230656 28230720 28230656 ID=Msa1243160-mRNA-1:cds;Parent=Msa1243160-mRNA-1
chr8_2 CDS 28231163 28231224 28231163 ID=Msa1243160-mRNA-1:cds;Parent=Msa1243160-mRNA-1
chr8_2 CDS 28232467 28232570 28232467 ID=Msa1243160-mRNA-1:cds;Parent=Msa1243160-mRNA-1
chr8_2 CDS 28233370 28233442 28233370 ID=Msa1243160-mRNA-1:cds;Parent=Msa1243160-mRNA-1
chr8_2 CDS 28233542 28233727 28233542 ID=Msa1243160-mRNA-1:cds;Parent=Msa1243160-mRNA-1
Gene Sequence

>Msa1243160

ATGGGATCTAACTCATTAAAGGATTATCTAAAAAAATATGTGAGTAACCCTGAAGATGACAAGAAAAACAAGAAGAAAAAGAAGAGGAAAACTCAACCACAACCAACTGGCTTGTTAGTTGTAGACGAAGATCCAACCTGGCAGAAGCCCGTAGATCTTGAAGAAGAAAACGATGAAAAGTTGTCAGATGAGGAGAAGCCGATAGTTGACGAAGACATTGAAGTAAAGCGTATGAAGAGGCTTGAGCAGCTGAAGGCTAGACGTGCTTATCATGATATATCTGAGGATGGAAGTGGTTGGGTTCCACTTTCAAATAATGATACATCTCCACCCCGTAAACAGAGGGTTCGAAATGACACTCCTTCACCAGAACCACCTGAATTGAATACTTCAACTTCTAATAGAACGGGTGCTGATTTATCCCCTTCGCGGAGGCAGTTGAAACGCTATGACACTCCATCACCTGAACGTGACTCACAACATTCTGGGGGAGTGAATTCTGATTTATCTCCTCCTCGTAAACGCAGAGATCAGAGTGTTACAGCTGTAGCTCGTGAACCAAGGTCGTCTAAATCAAAATTTGAAGATAGTGATATGTCACCTCCTCGACGGAAACATGTTAGTAATTCGAGTCCAGATATTTCCCCTCCTCGCCGTCGTAGTCATCAAACATCTGGATCCAATGGGAGAAAAAAATATGACACTTCTGACTTGGAAGATCTTTCTCCACCTAGACGGGGTCGTCATGATTCCCCCTCTCAAGATACTTTACATGGACAAGTGTCGTCTGATCTTTCACCCCCACGGAGACGCCAGCATAGTGTGGCAAGATCGAGTTTATCTGATGTTTCTCATCGTTCGGTGAAAGCTGTTTCACATCAATCTTTGGACAGTGACCTCTCTCCACCAAGGAAGAATTCAAAGGAGTTATCCATTCCAGCATCTGTTCATGAAAGAAAAACAGGTTTAATTTCTGGTAAGGATATCAGAGAAGAGATTGACAGAAAAAGGAAGGATGATTTGTTGAGACTTAAACAGATGGACCCTGTCATCAGTGGGCGCGGCGCTGAAGCTGTATATCGTGATAACAAAGGAGGACGCATTACCAAAGAGGAATATTTAAAGTCAAAACAGAAAGTAGACGATAAGCCCAAGGAGATTAAAATAGAATGGGGCAAGGGCCTTGCTCAAAAGCGGGAAGCTGAGGCTAAGCTAAAGGAACTAGAAGTTGAGAAGGAAAAGCCTTTTGCGCGGACCAGAGACGATCCTGAACTTGACAAGTTGATGAAGGAGAGGGTAAGATGGGGTGATCCTATGGCACATCTAGTAAAGAAAAAATATCCAGAGCCTGTTCTTCCAAACTTGGGGGATAGTGATAAAATGAGGGAATCTGGTTTTGTTGTTCCTCAAGATATTCCAAATCATAGCTGGTTGAAGAGAGGTTTAGAAGCTGCTCCAAACCGGTATGGGATAAGGCCGGGACGACACTGGGATGGTGTTGATCGTAGTAATGGTTAG

Protein sequence

>Msa1243160

MGSNSLKDYLKKYVSNPEDDKKNKKKKKRKTQPQPTGLLVVDEDPTWQKPVDLEEENDEKLSDEEKPIVDEDIEVKRMKRLEQLKARRAYHDISEDGSGWVPLSNNDTSPPRKQRVRNDTPSPEPPELNTSTSNRTGADLSPSRRQLKRYDTPSPERDSQHSGGVNSDLSPPRKRRDQSVTAVAREPRSSKSKFEDSDMSPPRRKHVSNSSPDISPPRRRSHQTSGSNGRKKYDTSDLEDLSPPRRGRHDSPSQDTLHGQVSSDLSPPRRRQHSVARSSLSDVSHRSVKAVSHQSLDSDLSPPRKNSKELSIPASVHERKTGLISGKDIREEIDRKRKDDLLRLKQMDPVISGRGAEAVYRDNKGGRITKEEYLKSKQKVDDKPKEIKIEWGKGLAQKREAEAKLKELEVEKEKPFARTRDDPELDKLMKERVRWGDPMAHLVKKKYPEPVLPNLGDSDKMRESGFVVPQDIPNHSWLKRGLEAAPNRYGIRPGRHWDGVDRSNG*