AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1036740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1036740 MtrunA17_Chr7g0261291 99.812 533 1 0 1 533 1 533 0.0 1104
Msa1036740 MtrunA17_Chr1g0193681 68.798 391 67 5 5 392 11 349 1.98e-168 480
Msa1036740 MtrunA17_Chr1g0187741 65.789 76 26 0 110 185 1 76 5.05e-28 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1036740 AT1G65660.1 82.584 534 91 1 1 532 1 534 0.0 913
Msa1036740 AT4G37120.1 78.652 534 112 1 1 532 1 534 0.0 874
Msa1036740 AT3G45950.1 71.781 365 93 3 1 364 1 356 0.0 536

Find 170 sgRNAs with CRISPR-Local

Find 363 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAAGAATCACACTCCAATT+TGG 0.190205 7_1:-73185463 None:intergenic
CTGAAGATGAAGATGATTTA+AGG 0.203780 7_1:+73188065 Msa1036740:CDS
ATGCACCTTTCCTATACTTC+TGG 0.255412 7_1:-73186920 None:intergenic
CTTGACCACTACTTCTATAT+TGG 0.255478 7_1:-73188563 None:intergenic
TTGCAGCACCCTCATCATTT+TGG 0.262971 7_1:-73188033 None:intergenic
ATGACATATACTGAGGAATA+TGG 0.265173 7_1:-73185990 None:intergenic
TTCACGCATGGACCTGGTCT+TGG 0.298183 7_1:-73188382 None:intergenic
CACAAAATGGCAACAGCTTC+AGG 0.301623 7_1:+73185529 Msa1036740:exon
TCATCCAGAACTACGTCTTC+TGG 0.306664 7_1:-73189855 None:intergenic
TCACGCATGGACCTGGTCTT+GGG 0.314163 7_1:-73188381 None:intergenic
CAACAACCACACAACTGTTT+GGG 0.317766 7_1:+73189467 Msa1036740:CDS
ACTTCCAAGAGAACTTCTTC+TGG 0.324372 7_1:+73188776 Msa1036740:CDS
GCTTGCCGATGCACTCAAAA+AGG 0.330113 7_1:+73189884 Msa1036740:CDS
ATCCTCTTCATACTTGCTTC+TGG 0.330708 7_1:-73189436 None:intergenic
GGCCTCTCCAAGCTTAGTTC+AGG 0.350587 7_1:-73190495 None:intergenic
CTATGTCTTTGAGAAACCTT+AGG 0.353465 7_1:+73190762 Msa1036740:three_prime_UTR
TTCTGCGTTTGATCACAAAA+TGG 0.357801 7_1:+73185516 Msa1036740:exon
TCAACAACCACACAACTGTT+TGG 0.359011 7_1:+73189466 Msa1036740:CDS
GAAGAATCACACTCCAATTT+GGG 0.359624 7_1:-73185462 None:intergenic
ACAGGTAACTCAAGAGGATA+TGG 0.365679 7_1:+73190421 Msa1036740:intron
TAAGCTTGGAGAGGCCAAAA+AGG 0.370857 7_1:+73190502 Msa1036740:three_prime_UTR
TGCACCTTTCCTATACTTCT+GGG 0.379997 7_1:-73186919 None:intergenic
TCCTCTTCATACTTGCTTCT+GGG 0.380155 7_1:-73189435 None:intergenic
AGAATTGCCATGAACAACTA+TGG 0.385975 7_1:-73191166 None:intergenic
GGAACAACAGCTGAAGAGAT+TGG 0.387586 7_1:+73188000 Msa1036740:CDS
GACACTATTATTGAGAAGTA+TGG 0.392536 7_1:+73188732 Msa1036740:CDS
TTTGTGTTTGTTACAATTGA+GGG 0.395569 7_1:-73191085 None:intergenic
AGTTACCTAAAATCCCAAAT+TGG 0.396186 7_1:+73185449 Msa1036740:five_prime_UTR
GAGAAGCGTGTGCGAACAAC+AGG 0.403536 7_1:+73188139 Msa1036740:CDS
GTTTGAAACATCAAAGGAAA+TGG 0.413225 7_1:+73186838 Msa1036740:CDS
TGGTCAAGCTTTGGAATTCA+AGG 0.415510 7_1:+73188578 Msa1036740:CDS
TAGAAGTAGTGGTCAAGCTT+TGG 0.419742 7_1:+73188569 Msa1036740:CDS
TCGTGCTGGTAGAATTGTTA+AGG 0.421506 7_1:+73188827 Msa1036740:CDS
TCCCTTGTCAAATGCTTCCC+AGG 0.423430 7_1:-73188616 None:intergenic
AAAGAAGCCATAGTTGTTCA+TGG 0.429918 7_1:+73191159 Msa1036740:three_prime_UTR
TGAAGATGAAGATGATTTAA+GGG 0.430484 7_1:+73188066 Msa1036740:CDS
CTACTAGCATATACTTGAAC+TGG 0.431267 7_1:-73190804 None:intergenic
ATTACTCTATAAGAATTTCA+AGG 0.432870 7_1:+73188677 Msa1036740:CDS
ATTTGTGTTTGTTACAATTG+AGG 0.436797 7_1:-73191086 None:intergenic
TGTTCCAGAAGACGTAGTTC+TGG 0.437289 7_1:+73189851 Msa1036740:CDS
ACGGCGAGGTTTAAATGAAC+TGG 0.437833 7_1:-73191042 None:intergenic
CTCAAGCTGCCAAGAGGAAT+GGG 0.438846 7_1:+73190568 Msa1036740:three_prime_UTR
TGACATATACTGAGGAATAT+GGG 0.442110 7_1:-73185989 None:intergenic
CTTATAGAGTAATTCAGCTT+GGG 0.445002 7_1:-73188667 None:intergenic
AGCTTGACTATGATGGCAAA+CGG 0.446023 7_1:+73187888 Msa1036740:CDS
CTTCCAAGAGAACTTCTTCT+GGG 0.446100 7_1:+73188777 Msa1036740:CDS
CGCTCGAAAGAAGTTCTTGA+AGG 0.450188 7_1:+73187979 Msa1036740:CDS
AACCTCAGCAGGTGCAAGTC+CGG 0.450714 7_1:-73185941 None:intergenic
TTTGGATCTGCCTCTGGAAG+AGG 0.454768 7_1:-73188408 None:intergenic
TGACCCAGAAGAAGTTCTCT+TGG 0.456809 7_1:-73188780 None:intergenic
CTTCTTTCGAGCGTCGTCTC+GGG 0.457445 7_1:-73187969 None:intergenic
AGCTATTGCACTGGTGCTGC+TGG 0.461250 7_1:+73189549 Msa1036740:CDS
CACTGGTGCTGCTGGTATTG+AGG 0.461483 7_1:+73189557 Msa1036740:CDS
TGGTCTTTCCATGCATGCCT+TGG 0.468273 7_1:-73187801 None:intergenic
GCACATTGCTGCTGATGAAA+AGG 0.477662 7_1:+73187853 Msa1036740:CDS
ACTTCTTTCGAGCGTCGTCT+CGG 0.480273 7_1:-73187970 None:intergenic
CTAAACCAATAGAAGAGAAA+AGG 0.482314 7_1:+73189808 Msa1036740:CDS
GAAATTGAAGTCTCAAACAA+AGG 0.483456 7_1:+73188710 Msa1036740:CDS
CATTTGCCTTAGTGACCCTA+AGG 0.483590 7_1:-73190778 None:intergenic
AGAGAAAAGGCCTGCTACAT+GGG 0.485089 7_1:+73189821 Msa1036740:CDS
CCATCTTCATCAACCTCAGC+AGG 0.485535 7_1:-73185952 None:intergenic
ATTGAGGCTGCTGAGGCTGC+AGG 0.490119 7_1:+73189573 Msa1036740:CDS
TGCTTTGCTCCTACTTTCCG+TGG 0.491979 7_1:-73187821 None:intergenic
AGGACTTAAACATCCATGCC+TGG 0.493322 7_1:+73188598 Msa1036740:CDS
ACACAACTGTTTGGGGCTCA+TGG 0.494810 7_1:+73189475 Msa1036740:CDS
TTGCAGTGGCATTCAAGTCC+AGG 0.496260 7_1:+73185875 Msa1036740:intron
TCTTATAGAGTAATTCAGCT+TGG 0.499036 7_1:-73188668 None:intergenic
AATACCGTTGTGTTGATGAA+TGG 0.500800 7_1:+73191126 Msa1036740:three_prime_UTR
TACACTCTGCCCATTCCTCT+TGG 0.502379 7_1:-73190577 None:intergenic
ACATCAGTTCCCCATGTAGC+AGG 0.504075 7_1:-73189831 None:intergenic
AAGAGGATATGGAGGCATAC+AGG 0.504821 7_1:+73190432 Msa1036740:CDS
AAGAGAAAAGGCCTGCTACA+TGG 0.505586 7_1:+73189820 Msa1036740:CDS
ACAACAGGCGGTGGGAGTAC+AGG 0.505697 7_1:+73188154 Msa1036740:CDS
GCACGTAAGGAGTCTGCTGC+AGG 0.507882 7_1:+73189618 Msa1036740:CDS
TACCATGATGTGGTGTAGTT+GGG 0.511009 7_1:-73186870 None:intergenic
GAGAAACCTTAGGGTCACTA+AGG 0.512960 7_1:+73190772 Msa1036740:three_prime_UTR
TGCTGGTATTGAGGCTGCTG+AGG 0.513900 7_1:+73189566 Msa1036740:CDS
TCTCAAGCTGCCAAGAGGAA+TGG 0.516628 7_1:+73190567 Msa1036740:three_prime_UTR
ACCACATCATGGTACGATAG+AGG 0.520950 7_1:+73186879 Msa1036740:CDS
TATGTCTTTGAGAAACCTTA+GGG 0.521014 7_1:+73190763 Msa1036740:three_prime_UTR
CTTGAGGAAGCTCGTAAAGC+CGG 0.521296 7_1:+73185922 Msa1036740:CDS
AGGATCTTCACGCATGGACC+TGG 0.521551 7_1:-73188388 None:intergenic
CGTGCTGGTAGAATTGTTAA+GGG 0.521936 7_1:+73188828 Msa1036740:CDS
TGTCAAATGCTTCCCAGGCA+TGG 0.522883 7_1:-73188611 None:intergenic
TAATGTCAGATGGAATGATC+AGG 0.524179 7_1:+73190315 Msa1036740:CDS
GAGAGCTAATATTGCACGTA+AGG 0.524660 7_1:+73189605 Msa1036740:CDS
TGTTAAAGATATAACAAGAC+AGG 0.524965 7_1:+73190919 Msa1036740:three_prime_UTR
ACATAATGCCAAGGCATGCA+TGG 0.526072 7_1:+73187793 Msa1036740:CDS
TGGTAGAATTGTTAAGGGAC+AGG 0.528512 7_1:+73188833 Msa1036740:CDS
CCTCTTCATACTTGCTTCTG+GGG 0.531693 7_1:-73189434 None:intergenic
TTCTTCTGGGTCAGAGTGAG+AGG 0.533851 7_1:+73188790 Msa1036740:CDS
GCTTGACTATGATGGCAAAC+GGG 0.536202 7_1:+73187889 Msa1036740:CDS
AGCGTAAATATAATGTCAGA+TGG 0.536290 7_1:+73190305 Msa1036740:CDS
GTACCATGATGTGGTGTAGT+TGG 0.538558 7_1:-73186871 None:intergenic
CACGCATGGACCTGGTCTTG+GGG 0.541517 7_1:-73188380 None:intergenic
ATGATGGCAAACGGGACAGA+TGG 0.550124 7_1:+73187897 Msa1036740:CDS
TCGAAAACAGATTGAGCTTG+AGG 0.551968 7_1:+73185906 Msa1036740:CDS
GGTTGATGAAAGCAAACAGA+TGG 0.552756 7_1:+73188102 Msa1036740:CDS
CACATTATGACCCCAAGACC+AGG 0.553071 7_1:+73188370 Msa1036740:CDS
TAAGAATTTCAAGGTCATGA+AGG 0.554860 7_1:+73188686 Msa1036740:CDS
GAGAACATCACAAAGGCTTG+TGG 0.558764 7_1:-73190548 None:intergenic
TGCAGCATTTAAAACCCCAC+TGG 0.564956 7_1:-73189509 None:intergenic
CAAGTTGAGTATGATCGTGC+TGG 0.565861 7_1:+73188813 Msa1036740:CDS
ATGGAAAGACCACGGAAAGT+AGG 0.568977 7_1:+73187812 Msa1036740:CDS
CCTGCTGAGGTTGATGAAGA+TGG 0.573554 7_1:+73185952 Msa1036740:CDS
CAGCTGAAGAGATTGGAGAA+GGG 0.574722 7_1:+73188007 Msa1036740:CDS
AGCCGGACTTGCACCTGCTG+AGG 0.576370 7_1:+73185939 Msa1036740:CDS
CGTGTGCGAACAACAGGCGG+TGG 0.578917 7_1:+73188145 Msa1036740:CDS
TGGAAGAGGATCTTCACGCA+TGG 0.581895 7_1:-73188394 None:intergenic
GATAACCAATATAGAAGTAG+TGG 0.583553 7_1:+73188558 Msa1036740:CDS
TGTAGAGTTTGAAACATCAA+AGG 0.584746 7_1:+73186832 Msa1036740:intron
ACAGCTGAAGAGATTGGAGA+AGG 0.585982 7_1:+73188006 Msa1036740:CDS
GGCAAACGGGACAGATGGAA+TGG 0.586064 7_1:+73187902 Msa1036740:CDS
CCCCAGAAGCAAGTATGAAG+AGG 0.586559 7_1:+73189434 Msa1036740:CDS
GGACTTAAACATCCATGCCT+GGG 0.588939 7_1:+73188599 Msa1036740:CDS
TGTTTGGGGCTCATGGTGGA+AGG 0.589122 7_1:+73189482 Msa1036740:CDS
TTGATATTTGAACAGCCTTG+TGG 0.589335 7_1:+73190633 Msa1036740:three_prime_UTR
ATCCCAACTACACCACATCA+TGG 0.592083 7_1:+73186868 Msa1036740:CDS
TTCCTGAACTAAGCTTGGAG+AGG 0.594079 7_1:+73190493 Msa1036740:exon
TAGAGTAATTCAGCTTGGGA+AGG 0.595348 7_1:-73188663 None:intergenic
AGAGAGAAGAGAAAGATGAG+AGG 0.596130 7_1:+73190281 Msa1036740:CDS
TGTGTTTGTTACAATTGAGG+GGG 0.596183 7_1:-73191083 None:intergenic
ACCTCTATCGTACCATGATG+TGG 0.597844 7_1:-73186880 None:intergenic
TTGTGTTTGTTACAATTGAG+GGG 0.599697 7_1:-73191084 None:intergenic
ATACGTAATAGCTATTGCAC+TGG 0.600890 7_1:+73189540 Msa1036740:CDS
CAAACAGATGGACTTTGCAA+AGG 0.601027 7_1:+73188114 Msa1036740:CDS
TGCAGTGGCATTCAAGTCCA+GGG 0.602123 7_1:+73185876 Msa1036740:intron
GACATATACTGAGGAATATG+GGG 0.605217 7_1:-73185988 None:intergenic
CAAAGACATAGTAAAACGAT+CGG 0.608705 7_1:-73190750 None:intergenic
ATCCAAACAGGTAACTCAAG+AGG 0.609923 7_1:+73190415 Msa1036740:intron
GAAGGGCGACCAAAATGATG+AGG 0.610286 7_1:+73188024 Msa1036740:CDS
ATGGTGGAAGGATCACCAGT+GGG 0.611827 7_1:+73189494 Msa1036740:CDS
GTATGGCAATGCAGCTGACG+AGG 0.612655 7_1:+73188749 Msa1036740:CDS
CTCTCGGCATTAAGATACCA+AGG 0.616262 7_1:-73186018 None:intergenic
GTGTATGATTAGCGAGAAAG+CGG 0.617155 7_1:+73190595 Msa1036740:three_prime_UTR
GTGTGCGAACAACAGGCGGT+GGG 0.617858 7_1:+73188146 Msa1036740:CDS
AACAACCACACAACTGTTTG+GGG 0.618191 7_1:+73189468 Msa1036740:CDS
CAGGCCCAGAAGTATAGGAA+AGG 0.625900 7_1:+73186915 Msa1036740:CDS
AGCTATGACACATAATGCCA+AGG 0.626277 7_1:+73187784 Msa1036740:CDS
TTTAAGGGTAGACGAGGCAA+AGG 0.628328 7_1:+73188081 Msa1036740:CDS
TCGGTATACACATGTAACGT+TGG 0.636000 7_1:-73190731 None:intergenic
TGTATGATTAGCGAGAAAGC+GGG 0.636814 7_1:+73190596 Msa1036740:three_prime_UTR
AGCGAGAAAGCGGGACAGAG+TGG 0.637562 7_1:+73190605 Msa1036740:three_prime_UTR
CAACTGTTTGGGGCTCATGG+TGG 0.640882 7_1:+73189478 Msa1036740:CDS
GAGAAAAGGCCTGCTACATG+GGG 0.647269 7_1:+73189822 Msa1036740:CDS
TGCCTGGGAAGCATTTGACA+AGG 0.649459 7_1:+73188614 Msa1036740:CDS
AAGCGTGTGCGAACAACAGG+CGG 0.649651 7_1:+73188142 Msa1036740:CDS
TGAGGTTGATGAAGATGGCA+AGG 0.654532 7_1:+73185957 Msa1036740:CDS
CTTTGAACTGAAATGAACAC+AGG 0.655688 7_1:-73190525 None:intergenic
GATGTTCTCAAGCTGCCAAG+AGG 0.658614 7_1:+73190562 Msa1036740:three_prime_UTR
CAGTATCCTCTCGAATACGT+AGG 0.658694 7_1:-73188314 None:intergenic
AAGGGCGACCAAAATGATGA+GGG 0.664419 7_1:+73188025 Msa1036740:CDS
GGTAACTCAAGAGGATATGG+AGG 0.664968 7_1:+73190424 Msa1036740:intron
GCGTGAAGATCCTCTTCCAG+AGG 0.666737 7_1:+73188398 Msa1036740:CDS
ACAAGATGTTCACATGCAAG+CGG 0.667127 7_1:+73188638 Msa1036740:CDS
CATAGTACTAACAAGCCACA+AGG 0.668967 7_1:-73190648 None:intergenic
CAGGAACCTACGTATTCGAG+AGG 0.670022 7_1:+73188308 Msa1036740:intron
GCCTGGGAAGCATTTGACAA+GGG 0.670926 7_1:+73188615 Msa1036740:CDS
GCAGCTTGAGAACATCACAA+AGG 0.680676 7_1:-73190555 None:intergenic
AGGCATGCATGGAAAGACCA+CGG 0.681793 7_1:+73187804 Msa1036740:CDS
AGATGATTTAAGGGTAGACG+AGG 0.685583 7_1:+73188075 Msa1036740:CDS
CATGGTGGAAGGATCACCAG+TGG 0.686577 7_1:+73189493 Msa1036740:CDS
TGAGGGTGCTGCAATTGATG+AGG 0.706358 7_1:+73188042 Msa1036740:CDS
ATAAAGAACAGATATAACAA+CGG 0.710049 7_1:-73190698 None:intergenic
GGCGCAGATGACATATACTG+AGG 0.723810 7_1:-73185997 None:intergenic
TGGTGGAAGGATCACCAGTG+GGG 0.729242 7_1:+73189495 Msa1036740:CDS
ATGAGCCCCAAACAGTTGTG+TGG 0.736062 7_1:-73189473 None:intergenic
GTGGGAGTACAGGAACTGTG+AGG 0.740528 7_1:+73188164 Msa1036740:CDS
AAAACCATTCATCAACACAA+CGG 0.744114 7_1:-73191130 None:intergenic
AGTGGCATTCAAGTCCAGGG+AGG 0.776072 7_1:+73185879 Msa1036740:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATAAAAAATAAAAA+AGG + chr7_1:73185414-73185433 Msa1036740:five_prime_UTR 0.0%
!! GTTTAATTACAATTAAAAAG+AGG - chr7_1:73185777-73185796 None:intergenic 15.0%
!!! ATGTTAATGAATTTTGTATT+CGG + chr7_1:73185848-73185867 Msa1036740:intron 15.0%
!! ACAAAATAAAATCTAGTATT+TGG + chr7_1:73187042-73187061 Msa1036740:intron 15.0%
!! TTAATTAATTTAGTTAATGC+AGG + chr7_1:73187365-73187384 Msa1036740:intron 15.0%
!! TAATTAATTTAGTTAATGCA+GGG + chr7_1:73187366-73187385 Msa1036740:intron 15.0%
!!! TGTTTTTGTTTTTATTTTGT+AGG + chr7_1:73188533-73188552 Msa1036740:intron 15.0%
!!! GTTTTTGTTTTTATTTTGTA+GGG + chr7_1:73188534-73188553 Msa1036740:intron 15.0%
!! AAAAAAAAAAATTGAAGGTA+CGG - chr7_1:73189204-73189223 None:intergenic 15.0%
!! AAGAGTAAAAAAAATATATG+TGG - chr7_1:73189927-73189946 None:intergenic 15.0%
!!! AATAATTATTTTTTGGATCA+CGG - chr7_1:73190875-73190894 None:intergenic 15.0%
!!! AAAAAATTACAATGTTGTTT+TGG + chr7_1:73191000-73191019 Msa1036740:three_prime_UTR 15.0%
!!! CAATTCAAAAGTACATAATT+AGG - chr7_1:73185799-73185818 None:intergenic 20.0%
!! ACTAATAAAGGAAAGTAATA+TGG - chr7_1:73186067-73186086 None:intergenic 20.0%
!! TCATCTCAAAAAACTAATAA+AGG - chr7_1:73186079-73186098 None:intergenic 20.0%
!!! TCTTCAATAATAGTTTTTCT+AGG - chr7_1:73186222-73186241 None:intergenic 20.0%
!! AATATGACAATTATCAATTG+TGG - chr7_1:73186766-73186785 None:intergenic 20.0%
!! TACAAGATAATATTATTGCA+AGG + chr7_1:73187416-73187435 Msa1036740:intron 20.0%
!! ACTGATAATTGTGTAATTAA+CGG - chr7_1:73188240-73188259 None:intergenic 20.0%
!! ATTACTCTATAAGAATTTCA+AGG + chr7_1:73188677-73188696 Msa1036740:CDS 20.0%
!! AAATAGTAAAAAAATGTGTC+AGG - chr7_1:73189093-73189112 None:intergenic 20.0%
!!! AAAAAAAAAATTGAAGGTAC+GGG - chr7_1:73189203-73189222 None:intergenic 20.0%
!!! CTTCTTTTATGTTTGATAAT+TGG + chr7_1:73189709-73189728 Msa1036740:intron 20.0%
!!! CAATATTTAGTTTGAATCAA+TGG - chr7_1:73190118-73190137 None:intergenic 20.0%
!! ATAAAGAACAGATATAACAA+CGG - chr7_1:73190701-73190720 None:intergenic 20.0%
!! GTAATGTTTGAAAAAAAGAA+CGG - chr7_1:73191064-73191083 None:intergenic 20.0%
!!! AATTTTGGTTTAACTTGACT+AGG + chr7_1:73185698-73185717 Msa1036740:intron 25.0%
!!! ATTTTGGTTTAACTTGACTA+GGG + chr7_1:73185699-73185718 Msa1036740:intron 25.0%
!! TTAATGAATTTTGTATTCGG+TGG + chr7_1:73185851-73185870 Msa1036740:intron 25.0%
! AATAAAGGAAAGTAATATGG+AGG - chr7_1:73186064-73186083 None:intergenic 25.0%
! AAACTATTAAGAAGATCTAG+AGG - chr7_1:73186534-73186553 None:intergenic 25.0%
! TGCAAAATATTGTGAAATAG+TGG + chr7_1:73186643-73186662 Msa1036740:intron 25.0%
!!! TATTGTATTTTTCGATGTGT+TGG + chr7_1:73187072-73187091 Msa1036740:intron 25.0%
!!! ACTGATTTTGTTGGATATAT+GGG + chr7_1:73187275-73187294 Msa1036740:intron 25.0%
!! CATATTTGGTTTATAAGTAC+TGG + chr7_1:73187336-73187355 Msa1036740:intron 25.0%
! ACTATATAACAAAACTGTCA+AGG + chr7_1:73187633-73187652 Msa1036740:intron 25.0%
! CTACTTAATATATGTTGAGA+CGG - chr7_1:73187531-73187550 None:intergenic 25.0%
! TGAAGATGAAGATGATTTAA+GGG + chr7_1:73188066-73188085 Msa1036740:CDS 25.0%
! GTAAATATATCTTAACCTTC+AGG + chr7_1:73188289-73188308 Msa1036740:intron 25.0%
!! TCCAAATGAAAAGTTTTACT+TGG + chr7_1:73188425-73188444 Msa1036740:CDS 25.0%
!! ACCAAGTAAAACTTTTCATT+TGG - chr7_1:73188429-73188448 None:intergenic 25.0%
!!! AGTAAGAAGCTTTAAAGTAT+GGG - chr7_1:73188966-73188985 None:intergenic 25.0%
!!! ATGATTTGCTCTTTTTATCA+AGG + chr7_1:73189301-73189320 Msa1036740:intron 25.0%
! TAGAATTGAACGAAAATCAA+TGG - chr7_1:73189332-73189351 None:intergenic 25.0%
!! ATTCTAAGCATTATGCTTTT+AGG + chr7_1:73189346-73189365 Msa1036740:intron 25.0%
!! ATTTATCTGTTGCTTCTAAT+AGG + chr7_1:73189401-73189420 Msa1036740:intron 25.0%
! TTAATAACAAAGAGAAGAGA+AGG - chr7_1:73189686-73189705 None:intergenic 25.0%
!! TTTATGTTTGATAATTGGTG+TGG + chr7_1:73189714-73189733 Msa1036740:intron 25.0%
! AATAGAACTCATTAACATCA+AGG - chr7_1:73190010-73190029 None:intergenic 25.0%
! ATAATAATTAACTCCACAGA+AGG - chr7_1:73190050-73190069 None:intergenic 25.0%
! TAGCATAAAGTCATTTATTC+TGG + chr7_1:73190181-73190200 Msa1036740:intron 25.0%
! AAACGATTTAAAAATCTGCA+AGG - chr7_1:73190393-73190412 None:intergenic 25.0%
!!! TAAATCGTTTTAATCCAAAC+AGG + chr7_1:73190403-73190422 Msa1036740:intron 25.0%
! TTCAGGAAAAATTCTTCATT+GGG - chr7_1:73190481-73190500 None:intergenic 25.0%
!!! CTATGCATTATTTTAGCATT+TGG + chr7_1:73190666-73190685 Msa1036740:three_prime_UTR 25.0%
!!! ACTTTTGATTGTTCTATTTC+TGG + chr7_1:73190831-73190850 Msa1036740:three_prime_UTR 25.0%
! TGTTAAAGATATAACAAGAC+AGG + chr7_1:73190919-73190938 Msa1036740:three_prime_UTR 25.0%
!! TTTGTGTTTGTTACAATTGA+GGG - chr7_1:73191088-73191107 None:intergenic 25.0%
!! ATTTGTGTTTGTTACAATTG+AGG - chr7_1:73191089-73191108 None:intergenic 25.0%
AGTTACCTAAAATCCCAAAT+TGG + chr7_1:73185449-73185468 Msa1036740:five_prime_UTR 30.0%
AAAGGATCGAAATTGAATTG+AGG - chr7_1:73185568-73185587 None:intergenic 30.0%
CGGGAATGAAAATTTGTAAA+AGG - chr7_1:73185586-73185605 None:intergenic 30.0%
TCATCGATAAACAAGATGTT+CGG - chr7_1:73185606-73185625 None:intergenic 30.0%
TCTGAATTGGATCAAAAAGA+TGG - chr7_1:73185631-73185650 None:intergenic 30.0%
TGACATATACTGAGGAATAT+GGG - chr7_1:73185992-73186011 None:intergenic 30.0%
ATGACATATACTGAGGAATA+TGG - chr7_1:73185993-73186012 None:intergenic 30.0%
!!! TTTTTTGAGATGAGAGAGTT+GGG + chr7_1:73186086-73186105 Msa1036740:intron 30.0%
AGATCTAGAGATTAATGAGT+TGG + chr7_1:73186239-73186258 Msa1036740:intron 30.0%
!!! GTTTCTCTTCTAGTTTTTCT+AGG + chr7_1:73186550-73186569 Msa1036740:intron 30.0%
AATTATCAATTGTGGATCAC+AGG - chr7_1:73186713-73186732 None:intergenic 30.0%
CACATGACAATTATCAATTG+TGG - chr7_1:73186721-73186740 None:intergenic 30.0%
GTTTCAAACTCTACATTTGA+AGG - chr7_1:73186827-73186846 None:intergenic 30.0%
! TGTAGAGTTTGAAACATCAA+AGG + chr7_1:73186832-73186851 Msa1036740:intron 30.0%
! GTTTGAAACATCAAAGGAAA+TGG + chr7_1:73186838-73186857 Msa1036740:CDS 30.0%
CAAAAACCATGTATTAATCC+AGG - chr7_1:73187237-73187256 None:intergenic 30.0%
ATCCAACAAAATCAGTCAAA+AGG - chr7_1:73187271-73187290 None:intergenic 30.0%
!! GACTGATTTTGTTGGATATA+TGG + chr7_1:73187274-73187293 Msa1036740:intron 30.0%
ATAATATTATTGCAAGGCGA+AGG + chr7_1:73187422-73187441 Msa1036740:intron 30.0%
TAATATTATTGCAAGGCGAA+GGG + chr7_1:73187423-73187442 Msa1036740:intron 30.0%
! CATTTGCTTTGTTATAGAGT+TGG + chr7_1:73187493-73187512 Msa1036740:intron 30.0%
TTATAGAGTTGGAATGAGAA+TGG + chr7_1:73187504-73187523 Msa1036740:intron 30.0%
AATATATGTTGAGACAAGCA+AGG + chr7_1:73187537-73187556 Msa1036740:intron 30.0%
!! TTGACAATTCAAGTTTGCTA+AGG - chr7_1:73187598-73187617 None:intergenic 30.0%
AATATATGTTGAGACAAGCA+AGG - chr7_1:73187537-73187556 None:intergenic 30.0%
! TCATCTTCTTTTTATAGCTG+CGG + chr7_1:73187761-73187780 Msa1036740:intron 30.0%
CTGAAGATGAAGATGATTTA+AGG + chr7_1:73188065-73188084 Msa1036740:CDS 30.0%
TGCGTGTTAATCTTTGTATT+TGG + chr7_1:73188501-73188520 Msa1036740:intron 30.0%
GCGTGTTAATCTTTGTATTT+GGG + chr7_1:73188502-73188521 Msa1036740:intron 30.0%
GATAACCAATATAGAAGTAG+TGG + chr7_1:73188558-73188577 Msa1036740:CDS 30.0%
CTTATAGAGTAATTCAGCTT+GGG - chr7_1:73188670-73188689 None:intergenic 30.0%
TCTTATAGAGTAATTCAGCT+TGG - chr7_1:73188671-73188690 None:intergenic 30.0%
TAAGAATTTCAAGGTCATGA+AGG + chr7_1:73188686-73188705 Msa1036740:CDS 30.0%
GAAATTGAAGTCTCAAACAA+AGG + chr7_1:73188710-73188729 Msa1036740:CDS 30.0%
GACACTATTATTGAGAAGTA+TGG + chr7_1:73188732-73188751 Msa1036740:CDS 30.0%
!! GAGTAAGAAGCTTTAAAGTA+TGG - chr7_1:73188967-73188986 None:intergenic 30.0%
! TCCGTTTGAAGTTAAATTTG+CGG + chr7_1:73189001-73189020 Msa1036740:intron 30.0%
! ACCGCAAATTTAACTTCAAA+CGG - chr7_1:73189005-73189024 None:intergenic 30.0%
!!! TTTAGGTTTTGCTATTCGTT+AGG + chr7_1:73189363-73189382 Msa1036740:intron 30.0%
! ATTTTCTTGAATCTGTACAG+AGG + chr7_1:73189782-73189801 Msa1036740:intron 30.0%
!!! CTTTTCTCTTCTATTGGTTT+AGG - chr7_1:73189810-73189829 None:intergenic 30.0%
CTAAACCAATAGAAGAGAAA+AGG + chr7_1:73189808-73189827 Msa1036740:CDS 30.0%
!!! TATTACCTTTTTGAGTGCAT+CGG - chr7_1:73189892-73189911 None:intergenic 30.0%
! TTTTCTTATTCTACCTTCTG+TGG + chr7_1:73190034-73190053 Msa1036740:intron 30.0%
! TGTCTAGACCTTGATAATTA+AGG - chr7_1:73190095-73190114 None:intergenic 30.0%
TGGATATTTGAATCTGTTTG+AGG + chr7_1:73190201-73190220 Msa1036740:intron 30.0%
AGCGTAAATATAATGTCAGA+TGG + chr7_1:73190305-73190324 Msa1036740:CDS 30.0%
GTTCAGGAAAAATTCTTCAT+TGG - chr7_1:73190482-73190501 None:intergenic 30.0%
! AATTTTTCCTGAACTAAGCT+TGG + chr7_1:73190488-73190507 Msa1036740:exon 30.0%
!! ATTTTAGCATTTGGAACACT+TGG + chr7_1:73190675-73190694 Msa1036740:three_prime_UTR 30.0%
CAAAGACATAGTAAAACGAT+CGG - chr7_1:73190753-73190772 None:intergenic 30.0%
! TATGTCTTTGAGAAACCTTA+GGG + chr7_1:73190763-73190782 Msa1036740:three_prime_UTR 30.0%
! TTGTGTTTGTTACAATTGAG+GGG - chr7_1:73191087-73191106 None:intergenic 30.0%
AAAACCATTCATCAACACAA+CGG - chr7_1:73191133-73191152 None:intergenic 30.0%
!! ACACTCCAATTTGGGATTTT+AGG - chr7_1:73185457-73185476 None:intergenic 35.0%
GAAGAATCACACTCCAATTT+GGG - chr7_1:73185465-73185484 None:intergenic 35.0%
TTCTGCGTTTGATCACAAAA+TGG + chr7_1:73185516-73185535 Msa1036740:exon 35.0%
CATCGATAAACAAGATGTTC+GGG - chr7_1:73185605-73185624 None:intergenic 35.0%
TCACGTTCTTCAATCTGAAT+TGG - chr7_1:73185644-73185663 None:intergenic 35.0%
GACATATACTGAGGAATATG+GGG - chr7_1:73185991-73186010 None:intergenic 35.0%
!!! GTTTTTTGAGATGAGAGAGT+TGG + chr7_1:73186085-73186104 Msa1036740:intron 35.0%
AGCACCTATAGTAGAAAAGA+TGG + chr7_1:73186114-73186133 Msa1036740:intron 35.0%
ACCTATAGTAGAAAAGATGG+TGG + chr7_1:73186117-73186136 Msa1036740:intron 35.0%
! TCCACCATCTTTTCTACTAT+AGG - chr7_1:73186121-73186140 None:intergenic 35.0%
!! TAGAAAAGATGGTGGAAACT+AGG + chr7_1:73186125-73186144 Msa1036740:intron 35.0%
AAACTAGGCTTAAGTGGTTT+GGG + chr7_1:73186140-73186159 Msa1036740:intron 35.0%
! AGTCAGATCTTTAGAGACAA+AGG + chr7_1:73186192-73186211 Msa1036740:intron 35.0%
AACAACAACAACAACAACCA+AGG - chr7_1:73186340-73186359 None:intergenic 35.0%
TTGTTGTAATAGCGCTATAG+CGG - chr7_1:73186414-73186433 None:intergenic 35.0%
! TGGTTTTCGATAGAACACTA+TGG - chr7_1:73186490-73186509 None:intergenic 35.0%
! TAATGAGTTGGAGAAAGACA+TGG - chr7_1:73186510-73186529 None:intergenic 35.0%
AGATCTAGAGGTTAATGAGT+TGG - chr7_1:73186522-73186541 None:intergenic 35.0%
AATAGCATATCGCAGAACAA+CGG - chr7_1:73186620-73186639 None:intergenic 35.0%
!!! TAGAGGTGCTAAAACTTTTC+AGG + chr7_1:73186896-73186915 Msa1036740:CDS 35.0%
!! TGTATTTTTCGATGTGTTGG+TGG + chr7_1:73187075-73187094 Msa1036740:intron 35.0%
!! GACCTTTTGACTGATTTTGT+TGG + chr7_1:73187266-73187285 Msa1036740:intron 35.0%
! TATGGGTTGAATTGCATCTT+AGG + chr7_1:73187292-73187311 Msa1036740:intron 35.0%
TCTACTTTGCACTGCATATT+TGG + chr7_1:73187322-73187341 Msa1036740:intron 35.0%
! GTTATCAACCTTGACAGTTT+TGG + chr7_1:73187559-73187578 Msa1036740:intron 35.0%
! ACTTTTGAGCTTGACTATGA+TGG + chr7_1:73187881-73187900 Msa1036740:CDS 35.0%
TGCTCTCATTGTAATAATGC+AGG + chr7_1:73188199-73188218 Msa1036740:intron 35.0%
GCTCTCATTGTAATAATGCA+GGG + chr7_1:73188200-73188219 Msa1036740:intron 35.0%
CTTGACCACTACTTCTATAT+TGG - chr7_1:73188566-73188585 None:intergenic 35.0%
CAAACGGAATAATGAGAGAA+GGG - chr7_1:73188989-73189008 None:intergenic 35.0%
TCAAACGGAATAATGAGAGA+AGG - chr7_1:73188990-73189009 None:intergenic 35.0%
ACAAAGAAGCAATGATGCAT+AGG - chr7_1:73189263-73189282 None:intergenic 35.0%
ATACGTAATAGCTATTGCAC+TGG + chr7_1:73189540-73189559 Msa1036740:CDS 35.0%
ATAACAAAGAGAAGAGAAGG+AGG - chr7_1:73189683-73189702 None:intergenic 35.0%
GGAGGTGATAACAAATATCA+AGG - chr7_1:73189957-73189976 None:intergenic 35.0%
!! ATATTTGTTATCACCTCCTC+TGG + chr7_1:73189959-73189978 Msa1036740:intron 35.0%
!! TATTTGTTATCACCTCCTCT+GGG + chr7_1:73189960-73189979 Msa1036740:intron 35.0%
TAAAAACATATACCCAGAGG+AGG - chr7_1:73189975-73189994 None:intergenic 35.0%
GAGTAAAAACATATACCCAG+AGG - chr7_1:73189978-73189997 None:intergenic 35.0%
TTCGTCTGCCTTAATTATCA+AGG + chr7_1:73190084-73190103 Msa1036740:intron 35.0%
TGTAATCTGTAGAAACGTGA+TGG + chr7_1:73190140-73190159 Msa1036740:intron 35.0%
GATATTCATGTGCATTGTAC+TGG + chr7_1:73190235-73190254 Msa1036740:intron 35.0%
!! GCATTGTACTGGTATTTTAC+AGG + chr7_1:73190246-73190265 Msa1036740:intron 35.0%
!! TTGTACTGGTATTTTACAGG+AGG + chr7_1:73190249-73190268 Msa1036740:intron 35.0%
TAATGTCAGATGGAATGATC+AGG + chr7_1:73190315-73190334 Msa1036740:CDS 35.0%
!!! TATGGTTTTTTCCATGTCAC+TGG + chr7_1:73190338-73190357 Msa1036740:intron 35.0%
AAGATTATCAACCAGTGACA+TGG - chr7_1:73190352-73190371 None:intergenic 35.0%
CGATTTAAAAATCTGCAAGG+AGG - chr7_1:73190390-73190409 None:intergenic 35.0%
CTTTGAACTGAAATGAACAC+AGG - chr7_1:73190528-73190547 None:intergenic 35.0%
TTGATATTTGAACAGCCTTG+TGG + chr7_1:73190633-73190652 Msa1036740:three_prime_UTR 35.0%
! CTATGTCTTTGAGAAACCTT+AGG + chr7_1:73190762-73190781 Msa1036740:three_prime_UTR 35.0%
CTACTAGCATATACTTGAAC+TGG - chr7_1:73190807-73190826 None:intergenic 35.0%
! TGTGTTTGTTACAATTGAGG+GGG - chr7_1:73191086-73191105 None:intergenic 35.0%
! AATACCGTTGTGTTGATGAA+TGG + chr7_1:73191126-73191145 Msa1036740:three_prime_UTR 35.0%
AAAGAAGCCATAGTTGTTCA+TGG + chr7_1:73191159-73191178 Msa1036740:three_prime_UTR 35.0%
CGAAGAATCACACTCCAATT+TGG - chr7_1:73185466-73185485 None:intergenic 40.0%
TCGAAAACAGATTGAGCTTG+AGG + chr7_1:73185906-73185925 Msa1036740:CDS 40.0%
GAAAAAACTTACGGGTCTCT+CGG - chr7_1:73186037-73186056 None:intergenic 40.0%
GAGGAGAGGAAAAAACTTAC+GGG - chr7_1:73186045-73186064 None:intergenic 40.0%
GGAGGAGAGGAAAAAACTTA+CGG - chr7_1:73186046-73186065 None:intergenic 40.0%
AGGAAAGTAATATGGAGGAG+AGG - chr7_1:73186059-73186078 None:intergenic 40.0%
GAAACTAGGCTTAAGTGGTT+TGG + chr7_1:73186139-73186158 Msa1036740:intron 40.0%
TTGTGGATCACAGGAAATAG+TGG - chr7_1:73186704-73186723 None:intergenic 40.0%
TACCATGATGTGGTGTAGTT+GGG - chr7_1:73186873-73186892 None:intergenic 40.0%
TGCACCTTTCCTATACTTCT+GGG - chr7_1:73186922-73186941 None:intergenic 40.0%
ATGCACCTTTCCTATACTTC+TGG - chr7_1:73186923-73186942 None:intergenic 40.0%
GATACATCCATCACATTTGG+AGG - chr7_1:73187004-73187023 None:intergenic 40.0%
CGAGATACATCCATCACATT+TGG - chr7_1:73187007-73187026 None:intergenic 40.0%
TACACGCCTGGATTAATACA+TGG + chr7_1:73187228-73187247 Msa1036740:intron 40.0%
!! CGAAGGGCATCTTAATAGTT+GGG + chr7_1:73187439-73187458 Msa1036740:intron 40.0%
GGCATCTTAATAGTTGGGTT+GGG + chr7_1:73187444-73187463 Msa1036740:intron 40.0%
TGTGTCTACCAAAACTGTCA+AGG - chr7_1:73187570-73187589 None:intergenic 40.0%
!! TGACAGTTTTGGTAGACACA+CGG + chr7_1:73187570-73187589 Msa1036740:intron 40.0%
CCTAAACTTGTACGAGAGAA+TGG - chr7_1:73187726-73187745 None:intergenic 40.0%
CCATTCTCTCGTACAAGTTT+AGG + chr7_1:73187723-73187742 Msa1036740:intron 40.0%
AGCTATGACACATAATGCCA+AGG + chr7_1:73187784-73187803 Msa1036740:CDS 40.0%
AGCTTGACTATGATGGCAAA+CGG + chr7_1:73187888-73187907 Msa1036740:CDS 40.0%
AGATGATTTAAGGGTAGACG+AGG + chr7_1:73188075-73188094 Msa1036740:CDS 40.0%
!! GGTTGATGAAAGCAAACAGA+TGG + chr7_1:73188102-73188121 Msa1036740:CDS 40.0%
! CAAACAGATGGACTTTGCAA+AGG + chr7_1:73188114-73188133 Msa1036740:CDS 40.0%
! TTTTCATTTGGATCTGCCTC+TGG - chr7_1:73188417-73188436 None:intergenic 40.0%
TAGAAGTAGTGGTCAAGCTT+TGG + chr7_1:73188569-73188588 Msa1036740:CDS 40.0%
!! TGGTCAAGCTTTGGAATTCA+AGG + chr7_1:73188578-73188597 Msa1036740:CDS 40.0%
ACAAGATGTTCACATGCAAG+CGG + chr7_1:73188638-73188657 Msa1036740:CDS 40.0%
TAGAGTAATTCAGCTTGGGA+AGG - chr7_1:73188666-73188685 None:intergenic 40.0%
ACTTCCAAGAGAACTTCTTC+TGG + chr7_1:73188776-73188795 Msa1036740:CDS 40.0%
CTTCCAAGAGAACTTCTTCT+GGG + chr7_1:73188777-73188796 Msa1036740:CDS 40.0%
! TCGTGCTGGTAGAATTGTTA+AGG + chr7_1:73188827-73188846 Msa1036740:CDS 40.0%
! CGTGCTGGTAGAATTGTTAA+GGG + chr7_1:73188828-73188847 Msa1036740:CDS 40.0%
TGGTAGAATTGTTAAGGGAC+AGG + chr7_1:73188833-73188852 Msa1036740:CDS 40.0%
TAAATGATGTATCCCGTACC+TGG + chr7_1:73189224-73189243 Msa1036740:intron 40.0%
TCCTCTTCATACTTGCTTCT+GGG - chr7_1:73189438-73189457 None:intergenic 40.0%
ATCCTCTTCATACTTGCTTC+TGG - chr7_1:73189439-73189458 None:intergenic 40.0%
TCAACAACCACACAACTGTT+TGG + chr7_1:73189466-73189485 Msa1036740:CDS 40.0%
CAACAACCACACAACTGTTT+GGG + chr7_1:73189467-73189486 Msa1036740:CDS 40.0%
AACAACCACACAACTGTTTG+GGG + chr7_1:73189468-73189487 Msa1036740:CDS 40.0%
GAGAGCTAATATTGCACGTA+AGG + chr7_1:73189605-73189624 Msa1036740:CDS 40.0%
AGAGAGAAGAGAAAGATGAG+AGG + chr7_1:73190281-73190300 Msa1036740:CDS 40.0%
TCAGATGGAATGATCAGGTA+TGG + chr7_1:73190320-73190339 Msa1036740:intron 40.0%
ATCCAAACAGGTAACTCAAG+AGG + chr7_1:73190415-73190434 Msa1036740:intron 40.0%
ATCCTCTTGAGTTACCTGTT+TGG - chr7_1:73190420-73190439 None:intergenic 40.0%
ACAGGTAACTCAAGAGGATA+TGG + chr7_1:73190421-73190440 Msa1036740:intron 40.0%
! GAAATGAACACAGGCCTTTT+TGG - chr7_1:73190519-73190538 None:intergenic 40.0%
GTGTATGATTAGCGAGAAAG+CGG + chr7_1:73190595-73190614 Msa1036740:three_prime_UTR 40.0%
TGTATGATTAGCGAGAAAGC+GGG + chr7_1:73190596-73190615 Msa1036740:three_prime_UTR 40.0%
CATAGTACTAACAAGCCACA+AGG - chr7_1:73190651-73190670 None:intergenic 40.0%
TCGGTATACACATGTAACGT+TGG - chr7_1:73190734-73190753 None:intergenic 40.0%
GTTTGAAAAAAAGAACGGCG+AGG - chr7_1:73191059-73191078 None:intergenic 40.0%
CACAAAATGGCAACAGCTTC+AGG + chr7_1:73185529-73185548 Msa1036740:exon 45.0%
!! TTGTATTCGGTGGATTGCAG+TGG + chr7_1:73185861-73185880 Msa1036740:intron 45.0%
!! TGAGGTTGATGAAGATGGCA+AGG + chr7_1:73185957-73185976 Msa1036740:CDS 45.0%
AGTATATGTCATCTGCGCCT+TGG + chr7_1:73186001-73186020 Msa1036740:CDS 45.0%
CTCTCGGCATTAAGATACCA+AGG - chr7_1:73186021-73186040 None:intergenic 45.0%
! TTTGAGATGAGAGAGTTGGG+TGG + chr7_1:73186089-73186108 Msa1036740:intron 45.0%
TTGAGATGAGAGAGTTGGGT+GGG + chr7_1:73186090-73186109 Msa1036740:intron 45.0%
TGGTGGAAACTAGGCTTAAG+TGG + chr7_1:73186134-73186153 Msa1036740:intron 45.0%
!! ACTAAGTCAGGTGGACTACA+TGG - chr7_1:73186309-73186328 None:intergenic 45.0%
ATGTAGTCCACCTGACTTAG+TGG + chr7_1:73186308-73186327 Msa1036740:intron 45.0%
TGTAGTCCACCTGACTTAGT+GGG + chr7_1:73186309-73186328 Msa1036740:intron 45.0%
AAGGCTTATCCCACTAAGTC+AGG - chr7_1:73186321-73186340 None:intergenic 45.0%
TGACTTAGTGGGATAAGCCT+TGG + chr7_1:73186320-73186339 Msa1036740:intron 45.0%
! CAAGCCTTTTCCCTCTAAGT+GGG + chr7_1:73186438-73186457 Msa1036740:intron 45.0%
! AAGCCTTTTCCCTCTAAGTG+GGG + chr7_1:73186439-73186458 Msa1036740:intron 45.0%
GCTATAGCACTGTTGTGTAG+TGG + chr7_1:73186667-73186686 Msa1036740:intron 45.0%
ATCCCAACTACACCACATCA+TGG + chr7_1:73186868-73186887 Msa1036740:CDS 45.0%
GTACCATGATGTGGTGTAGT+TGG - chr7_1:73186874-73186893 None:intergenic 45.0%
ACCACATCATGGTACGATAG+AGG + chr7_1:73186879-73186898 Msa1036740:CDS 45.0%
ACCTCTATCGTACCATGATG+TGG - chr7_1:73186883-73186902 None:intergenic 45.0%
!! CTTTTCAGGCCCAGAAGTAT+AGG + chr7_1:73186910-73186929 Msa1036740:CDS 45.0%
TGTTGTGCCTCCAAATGTGA+TGG + chr7_1:73186994-73187013 Msa1036740:intron 45.0%
! GTCTTGTTAGTTTACACGCC+TGG + chr7_1:73187216-73187235 Msa1036740:intron 45.0%
!! GCGAAGGGCATCTTAATAGT+TGG + chr7_1:73187438-73187457 Msa1036740:intron 45.0%
GGGCATCTTAATAGTTGGGT+TGG + chr7_1:73187443-73187462 Msa1036740:intron 45.0%
ACATAATGCCAAGGCATGCA+TGG + chr7_1:73187793-73187812 Msa1036740:CDS 45.0%
ATGGAAAGACCACGGAAAGT+AGG + chr7_1:73187812-73187831 Msa1036740:CDS 45.0%
GCACATTGCTGCTGATGAAA+AGG + chr7_1:73187853-73187872 Msa1036740:CDS 45.0%
GCTTGACTATGATGGCAAAC+GGG + chr7_1:73187889-73187908 Msa1036740:CDS 45.0%
CGCTCGAAAGAAGTTCTTGA+AGG + chr7_1:73187979-73187998 Msa1036740:CDS 45.0%
GGAACAACAGCTGAAGAGAT+TGG + chr7_1:73188000-73188019 Msa1036740:CDS 45.0%
ACAGCTGAAGAGATTGGAGA+AGG + chr7_1:73188006-73188025 Msa1036740:CDS 45.0%
CAGCTGAAGAGATTGGAGAA+GGG + chr7_1:73188007-73188026 Msa1036740:CDS 45.0%
AAGGGCGACCAAAATGATGA+GGG + chr7_1:73188025-73188044 Msa1036740:CDS 45.0%
! TTGCAGCACCCTCATCATTT+TGG - chr7_1:73188036-73188055 None:intergenic 45.0%
TTTAAGGGTAGACGAGGCAA+AGG + chr7_1:73188081-73188100 Msa1036740:CDS 45.0%
! TAATGCAGGGCGAAGTTGAT+TGG + chr7_1:73188213-73188232 Msa1036740:intron 45.0%
TCGAATACGTAGGTTCCTGA+AGG - chr7_1:73188307-73188326 None:intergenic 45.0%
CAGTATCCTCTCGAATACGT+AGG - chr7_1:73188317-73188336 None:intergenic 45.0%
AGGACTTAAACATCCATGCC+TGG + chr7_1:73188598-73188617 Msa1036740:CDS 45.0%
GGACTTAAACATCCATGCCT+GGG + chr7_1:73188599-73188618 Msa1036740:CDS 45.0%
TGACCCAGAAGAAGTTCTCT+TGG - chr7_1:73188783-73188802 None:intergenic 45.0%
! CAAGTTGAGTATGATCGTGC+TGG + chr7_1:73188813-73188832 Msa1036740:CDS 45.0%
TACGAGTACAGTACCAGGTA+CGG - chr7_1:73189240-73189259 None:intergenic 45.0%
ATAGGTACGAGTACAGTACC+AGG - chr7_1:73189245-73189264 None:intergenic 45.0%
CCTCTTCATACTTGCTTCTG+GGG - chr7_1:73189437-73189456 None:intergenic 45.0%
! TGCAGCATTTAAAACCCCAC+TGG - chr7_1:73189512-73189531 None:intergenic 45.0%
AGAAGAGAAGGAGGAGATAG+AGG - chr7_1:73189674-73189693 None:intergenic 45.0%
! GCAGGCCTTTTCTCTTCTAT+TGG - chr7_1:73189816-73189835 None:intergenic 45.0%
AAGAGAAAAGGCCTGCTACA+TGG + chr7_1:73189820-73189839 Msa1036740:CDS 45.0%
AGAGAAAAGGCCTGCTACAT+GGG + chr7_1:73189821-73189840 Msa1036740:CDS 45.0%
TGTTCCAGAAGACGTAGTTC+TGG + chr7_1:73189851-73189870 Msa1036740:CDS 45.0%
TCATCCAGAACTACGTCTTC+TGG - chr7_1:73189858-73189877 None:intergenic 45.0%
GTAGAAACGTGATGGCACTA+TGG + chr7_1:73190148-73190167 Msa1036740:intron 45.0%
GGTAACTCAAGAGGATATGG+AGG + chr7_1:73190424-73190443 Msa1036740:intron 45.0%
! AAGAGGATATGGAGGCATAC+AGG + chr7_1:73190432-73190451 Msa1036740:CDS 45.0%
TTCCTGAACTAAGCTTGGAG+AGG + chr7_1:73190493-73190512 Msa1036740:exon 45.0%
TAAGCTTGGAGAGGCCAAAA+AGG + chr7_1:73190502-73190521 Msa1036740:three_prime_UTR 45.0%
GAGAACATCACAAAGGCTTG+TGG - chr7_1:73190551-73190570 None:intergenic 45.0%
GCAGCTTGAGAACATCACAA+AGG - chr7_1:73190558-73190577 None:intergenic 45.0%
GAGAAACCTTAGGGTCACTA+AGG + chr7_1:73190772-73190791 Msa1036740:three_prime_UTR 45.0%
CATTTGCCTTAGTGACCCTA+AGG - chr7_1:73190781-73190800 None:intergenic 45.0%
ACGGCGAGGTTTAAATGAAC+TGG - chr7_1:73191045-73191064 None:intergenic 45.0%
!!! TATTTTTTATTTTTTTTGAA+GGG - chr7_1:73185410-73185429 None:intergenic 5.0%
!!! TTATTTTTTATTTTTTTTGA+AGG - chr7_1:73185411-73185430 None:intergenic 5.0%
!!! TTTATATATTTATTCAATTT+TGG + chr7_1:73185683-73185702 Msa1036740:intron 5.0%
!! ATTTAAAAAAAAAAAATTGA+AGG - chr7_1:73189209-73189228 None:intergenic 5.0%
!!! GAAATTTAATAATTATTTTT+TGG - chr7_1:73190882-73190901 None:intergenic 5.0%
TTGCAGTGGCATTCAAGTCC+AGG + chr7_1:73185875-73185894 Msa1036740:intron 50.0%
TGCAGTGGCATTCAAGTCCA+GGG + chr7_1:73185876-73185895 Msa1036740:intron 50.0%
! CTGTTTTCGATGATCCTCCC+TGG - chr7_1:73185896-73185915 None:intergenic 50.0%
CTTGAGGAAGCTCGTAAAGC+CGG + chr7_1:73185922-73185941 Msa1036740:CDS 50.0%
CCATCTTCATCAACCTCAGC+AGG - chr7_1:73185955-73185974 None:intergenic 50.0%
!! CCTGCTGAGGTTGATGAAGA+TGG + chr7_1:73185952-73185971 Msa1036740:CDS 50.0%
GGCGCAGATGACATATACTG+AGG - chr7_1:73186000-73186019 None:intergenic 50.0%
GCTTATCCCACTAAGTCAGG+TGG - chr7_1:73186318-73186337 None:intergenic 50.0%
CCACTTAGAGGGAAAAGGCT+TGG - chr7_1:73186440-73186459 None:intergenic 50.0%
! CCAAGCCTTTTCCCTCTAAG+TGG + chr7_1:73186437-73186456 Msa1036740:intron 50.0%
! CTTTTCCCTCTAAGTGGGGT+CGG + chr7_1:73186443-73186462 Msa1036740:intron 50.0%
! CAGGCCCAGAAGTATAGGAA+AGG + chr7_1:73186915-73186934 Msa1036740:CDS 50.0%
TGGTCTTTCCATGCATGCCT+TGG - chr7_1:73187804-73187823 None:intergenic 50.0%
AGGCATGCATGGAAAGACCA+CGG + chr7_1:73187804-73187823 Msa1036740:CDS 50.0%
TGCTTTGCTCCTACTTTCCG+TGG - chr7_1:73187824-73187843 None:intergenic 50.0%
ATGATGGCAAACGGGACAGA+TGG + chr7_1:73187897-73187916 Msa1036740:CDS 50.0%
! ACTTCTTTCGAGCGTCGTCT+CGG - chr7_1:73187973-73187992 None:intergenic 50.0%
GAAGGGCGACCAAAATGATG+AGG + chr7_1:73188024-73188043 Msa1036740:CDS 50.0%
!! TGAGGGTGCTGCAATTGATG+AGG + chr7_1:73188042-73188061 Msa1036740:CDS 50.0%
CAGGAACCTACGTATTCGAG+AGG + chr7_1:73188308-73188327 Msa1036740:intron 50.0%
CACATTATGACCCCAAGACC+AGG + chr7_1:73188370-73188389 Msa1036740:CDS 50.0%
TGGAAGAGGATCTTCACGCA+TGG - chr7_1:73188397-73188416 None:intergenic 50.0%
! TTTGGATCTGCCTCTGGAAG+AGG - chr7_1:73188411-73188430 None:intergenic 50.0%
TGTCAAATGCTTCCCAGGCA+TGG - chr7_1:73188614-73188633 None:intergenic 50.0%
!! TGCCTGGGAAGCATTTGACA+AGG + chr7_1:73188614-73188633 Msa1036740:CDS 50.0%
!! GCCTGGGAAGCATTTGACAA+GGG + chr7_1:73188615-73188634 Msa1036740:CDS 50.0%
TCCCTTGTCAAATGCTTCCC+AGG - chr7_1:73188619-73188638 None:intergenic 50.0%
TTCTTCTGGGTCAGAGTGAG+AGG + chr7_1:73188790-73188809 Msa1036740:CDS 50.0%
ACGAGTACAGTACCAGGTAC+GGG - chr7_1:73189239-73189258 None:intergenic 50.0%
CCCCAGAAGCAAGTATGAAG+AGG + chr7_1:73189434-73189453 Msa1036740:CDS 50.0%
ATGAGCCCCAAACAGTTGTG+TGG - chr7_1:73189476-73189495 None:intergenic 50.0%
! ACACAACTGTTTGGGGCTCA+TGG + chr7_1:73189475-73189494 Msa1036740:CDS 50.0%
! ATGGTGGAAGGATCACCAGT+GGG + chr7_1:73189494-73189513 Msa1036740:CDS 50.0%
GAGAAAAGGCCTGCTACATG+GGG + chr7_1:73189822-73189841 Msa1036740:CDS 50.0%
ACATCAGTTCCCCATGTAGC+AGG - chr7_1:73189834-73189853 None:intergenic 50.0%
GCTTGCCGATGCACTCAAAA+AGG + chr7_1:73189884-73189903 Msa1036740:CDS 50.0%
GATGTTCTCAAGCTGCCAAG+AGG + chr7_1:73190562-73190581 Msa1036740:three_prime_UTR 50.0%
TCTCAAGCTGCCAAGAGGAA+TGG + chr7_1:73190567-73190586 Msa1036740:three_prime_UTR 50.0%
CTCAAGCTGCCAAGAGGAAT+GGG + chr7_1:73190568-73190587 Msa1036740:three_prime_UTR 50.0%
TACACTCTGCCCATTCCTCT+TGG - chr7_1:73190580-73190599 None:intergenic 50.0%
AGTGGCATTCAAGTCCAGGG+AGG + chr7_1:73185879-73185898 Msa1036740:intron 55.0%
AACCTCAGCAGGTGCAAGTC+CGG - chr7_1:73185944-73185963 None:intergenic 55.0%
CGACCCCACTTAGAGGGAAA+AGG - chr7_1:73186445-73186464 None:intergenic 55.0%
!! AAGCACCGACCCCACTTAGA+GGG - chr7_1:73186451-73186470 None:intergenic 55.0%
GGCAAACGGGACAGATGGAA+TGG + chr7_1:73187902-73187921 Msa1036740:CDS 55.0%
! CTTCTTTCGAGCGTCGTCTC+GGG - chr7_1:73187972-73187991 None:intergenic 55.0%
! GAGAAGCGTGTGCGAACAAC+AGG + chr7_1:73188139-73188158 Msa1036740:CDS 55.0%
AAGCGTGTGCGAACAACAGG+CGG + chr7_1:73188142-73188161 Msa1036740:CDS 55.0%
! GTGGGAGTACAGGAACTGTG+AGG + chr7_1:73188164-73188183 Msa1036740:CDS 55.0%
! TCACGCATGGACCTGGTCTT+GGG - chr7_1:73188384-73188403 None:intergenic 55.0%
TTCACGCATGGACCTGGTCT+TGG - chr7_1:73188385-73188404 None:intergenic 55.0%
AGGATCTTCACGCATGGACC+TGG - chr7_1:73188391-73188410 None:intergenic 55.0%
GCGTGAAGATCCTCTTCCAG+AGG + chr7_1:73188398-73188417 Msa1036740:CDS 55.0%
GTATGGCAATGCAGCTGACG+AGG + chr7_1:73188749-73188768 Msa1036740:CDS 55.0%
! CAACTGTTTGGGGCTCATGG+TGG + chr7_1:73189478-73189497 Msa1036740:CDS 55.0%
! TGTTTGGGGCTCATGGTGGA+AGG + chr7_1:73189482-73189501 Msa1036740:CDS 55.0%
! CATGGTGGAAGGATCACCAG+TGG + chr7_1:73189493-73189512 Msa1036740:CDS 55.0%
TGGTGGAAGGATCACCAGTG+GGG + chr7_1:73189495-73189514 Msa1036740:CDS 55.0%
!! AGCTATTGCACTGGTGCTGC+TGG + chr7_1:73189549-73189568 Msa1036740:CDS 55.0%
!! CACTGGTGCTGCTGGTATTG+AGG + chr7_1:73189557-73189576 Msa1036740:CDS 55.0%
! TGCTGGTATTGAGGCTGCTG+AGG + chr7_1:73189566-73189585 Msa1036740:CDS 55.0%
! ATAGAGGCGCAGCAGGGATA+TGG - chr7_1:73189658-73189677 None:intergenic 55.0%
GGCCTCTCCAAGCTTAGTTC+AGG - chr7_1:73190498-73190517 None:intergenic 55.0%
!! GAAGCACCGACCCCACTTAG+AGG - chr7_1:73186452-73186471 None:intergenic 60.0%
GTGTGCGAACAACAGGCGGT+GGG + chr7_1:73188146-73188165 Msa1036740:CDS 60.0%
! ACAACAGGCGGTGGGAGTAC+AGG + chr7_1:73188154-73188173 Msa1036740:CDS 60.0%
!! CACGCATGGACCTGGTCTTG+GGG - chr7_1:73188383-73188402 None:intergenic 60.0%
ATTGAGGCTGCTGAGGCTGC+AGG + chr7_1:73189573-73189592 Msa1036740:CDS 60.0%
GCACGTAAGGAGTCTGCTGC+AGG + chr7_1:73189618-73189637 Msa1036740:CDS 60.0%
! GAGGAGATAGAGGCGCAGCA+GGG - chr7_1:73189664-73189683 None:intergenic 60.0%
AGCGAGAAAGCGGGACAGAG+TGG + chr7_1:73190605-73190624 Msa1036740:three_prime_UTR 60.0%
AGCCGGACTTGCACCTGCTG+AGG + chr7_1:73185939-73185958 Msa1036740:CDS 65.0%
CGTGTGCGAACAACAGGCGG+TGG + chr7_1:73188145-73188164 Msa1036740:CDS 65.0%
! GGAGGAGATAGAGGCGCAGC+AGG - chr7_1:73189665-73189684 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 73185383 73191182 73185383 ID=Msa1036740;Name=Msa1036740
chr7_1 mRNA 73185383 73191182 73185383 ID=Msa1036740-mRNA-1;Parent=Msa1036740;Name=Msa1036740-mRNA-1;_AED=0.05;_eAED=0.05;_QI=152|1|1|1|1|1|10|683|533
chr7_1 exon 73185383 73185550 73185383 ID=Msa1036740-mRNA-1:exon:17970;Parent=Msa1036740-mRNA-1
chr7_1 exon 73185881 73186044 73185881 ID=Msa1036740-mRNA-1:exon:17971;Parent=Msa1036740-mRNA-1
chr7_1 exon 73186837 73186949 73186837 ID=Msa1036740-mRNA-1:exon:17972;Parent=Msa1036740-mRNA-1
chr7_1 exon 73187778 73188185 73187778 ID=Msa1036740-mRNA-1:exon:17973;Parent=Msa1036740-mRNA-1
chr7_1 exon 73188311 73188446 73188311 ID=Msa1036740-mRNA-1:exon:17974;Parent=Msa1036740-mRNA-1
chr7_1 exon 73188555 73188854 73188555 ID=Msa1036740-mRNA-1:exon:17975;Parent=Msa1036740-mRNA-1
chr7_1 exon 73189423 73189639 73189423 ID=Msa1036740-mRNA-1:exon:17976;Parent=Msa1036740-mRNA-1
chr7_1 exon 73189802 73189905 73189802 ID=Msa1036740-mRNA-1:exon:17977;Parent=Msa1036740-mRNA-1
chr7_1 exon 73190268 73190336 73190268 ID=Msa1036740-mRNA-1:exon:17978;Parent=Msa1036740-mRNA-1
chr7_1 exon 73190425 73191182 73190425 ID=Msa1036740-mRNA-1:exon:17979;Parent=Msa1036740-mRNA-1
chr7_1 five_prime_UTR 73185383 73185534 73185383 ID=Msa1036740-mRNA-1:five_prime_utr;Parent=Msa1036740-mRNA-1
chr7_1 CDS 73185535 73185550 73185535 ID=Msa1036740-mRNA-1:cds;Parent=Msa1036740-mRNA-1
chr7_1 CDS 73185881 73186044 73185881 ID=Msa1036740-mRNA-1:cds;Parent=Msa1036740-mRNA-1
chr7_1 CDS 73186837 73186949 73186837 ID=Msa1036740-mRNA-1:cds;Parent=Msa1036740-mRNA-1
chr7_1 CDS 73187778 73188185 73187778 ID=Msa1036740-mRNA-1:cds;Parent=Msa1036740-mRNA-1
chr7_1 CDS 73188311 73188446 73188311 ID=Msa1036740-mRNA-1:cds;Parent=Msa1036740-mRNA-1
chr7_1 CDS 73188555 73188854 73188555 ID=Msa1036740-mRNA-1:cds;Parent=Msa1036740-mRNA-1
chr7_1 CDS 73189423 73189639 73189423 ID=Msa1036740-mRNA-1:cds;Parent=Msa1036740-mRNA-1
chr7_1 CDS 73189802 73189905 73189802 ID=Msa1036740-mRNA-1:cds;Parent=Msa1036740-mRNA-1
chr7_1 CDS 73190268 73190336 73190268 ID=Msa1036740-mRNA-1:cds;Parent=Msa1036740-mRNA-1
chr7_1 CDS 73190425 73190499 73190425 ID=Msa1036740-mRNA-1:cds;Parent=Msa1036740-mRNA-1
chr7_1 three_prime_UTR 73190500 73191182 73190500 ID=Msa1036740-mRNA-1:three_prime_utr;Parent=Msa1036740-mRNA-1
Gene Sequence

>Msa1036740

ATGGCAACAGCTTCAGTGGCATTCAAGTCCAGGGAGGATCATCGAAAACAGATTGAGCTTGAGGAAGCTCGTAAAGCCGGACTTGCACCTGCTGAGGTTGATGAAGATGGCAAGGAAATCAATCCCCATATTCCTCAGTATATGTCATCTGCGCCTTGGTATCTTAATGCCGAGAGACCCAGTTTGAAACATCAAAGGAAATGGAAATCTGATCCCAACTACACCACATCATGGTACGATAGAGGTGCTAAAACTTTTCAGGCCCAGAAGTATAGGAAAGGTGCATGTGAGAACTGCGGAGCTATGACACATAATGCCAAGGCATGCATGGAAAGACCACGGAAAGTAGGAGCAAAGCATACAGACAAGCACATTGCTGCTGATGAAAAGGTAGAAACTTTTGAGCTTGACTATGATGGCAAACGGGACAGATGGAATGGTTATGATGCTTCAACATATGCTCGAGTCATTGAGAGATATGAAGCCCGAGACGACGCTCGAAAGAAGTTCTTGAAGGAACAACAGCTGAAGAGATTGGAGAAGGGCGACCAAAATGATGAGGGTGCTGCAATTGATGAGGCTGAAGATGAAGATGATTTAAGGGTAGACGAGGCAAAGGTTGATGAAAGCAAACAGATGGACTTTGCAAAGGTTGAGAAGCGTGTGCGAACAACAGGCGGTGGGAGTACAGGAACTGTGAGGAACCTACGTATTCGAGAGGATACTGCAAAATATCTTCTAAATCTTGATGTCAATTCTGCACATTATGACCCCAAGACCAGGTCCATGCGTGAAGATCCTCTTCCAGAGGCAGATCCAAATGAAAAGTTTTACTTGGGTGATAACCAATATAGAAGTAGTGGTCAAGCTTTGGAATTCAAGGACTTAAACATCCATGCCTGGGAAGCATTTGACAAGGGACAAGATGTTCACATGCAAGCGGCTCCTTCCCAAGCTGAATTACTCTATAAGAATTTCAAGGTCATGAAGGAGAAATTGAAGTCTCAAACAAAGGACACTATTATTGAGAAGTATGGCAATGCAGCTGACGAGGACAAACTTCCAAGAGAACTTCTTCTGGGTCAGAGTGAGAGGCAAGTTGAGTATGATCGTGCTGGTAGAATTGTTAAGGGACAGGAAGTCGCAATCCCCAGAAGCAAGTATGAAGAGGATGTTTACATCAACAACCACACAACTGTTTGGGGCTCATGGTGGAAGGATCACCAGTGGGGTTTTAAATGCTGCAAGCAGACAATACGTAATAGCTATTGCACTGGTGCTGCTGGTATTGAGGCTGCTGAGGCTGCAGGTGATCTTATGAGAGCTAATATTGCACGTAAGGAGTCTGCTGCAGAGGATCCTAAACCAATAGAAGAGAAAAGGCCTGCTACATGGGGAACTGATGTTCCAGAAGACGTAGTTCTGGATGAAAAATTGCTTGCCGATGCACTCAAAAAGGAGGATCAAAGAAAGAGAGAAGAGAAAGATGAGAGGAAGCGTAAATATAATGTCAGATGGAATGATCAGGTAACTCAAGAGGATATGGAGGCATACAGGATGAAGAAAGTACATCACGATGACCCAATGAAGAATTTTTCCTGA

Protein sequence

>Msa1036740

MATASVAFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNAERPSLKHQRKWKSDPNYTTSWYDRGAKTFQAQKYRKGACENCGAMTHNAKACMERPRKVGAKHTDKHIAADEKVETFELDYDGKRDRWNGYDASTYARVIERYEARDDARKKFLKEQQLKRLEKGDQNDEGAAIDEAEDEDDLRVDEAKVDESKQMDFAKVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAHYDPKTRSMREDPLPEADPNEKFYLGDNQYRSSGQALEFKDLNIHAWEAFDKGQDVHMQAAPSQAELLYKNFKVMKEKLKSQTKDTIIEKYGNAADEDKLPRELLLGQSERQVEYDRAGRIVKGQEVAIPRSKYEEDVYINNHTTVWGSWWKDHQWGFKCCKQTIRNSYCTGAAGIEAAEAAGDLMRANIARKESAAEDPKPIEEKRPATWGTDVPEDVVLDEKLLADALKKEDQRKREEKDERKRKYNVRWNDQVTQEDMEAYRMKKVHHDDPMKNFS*