AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0003220

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0003220 MtrunA17_Chr1g0155911 100.000 1195 0 0 1 1195 1 1195 0.0 2502
Msa0003220 MtrunA17_Chr8g0345421 37.227 1190 652 22 20 1179 3 1127 0.0 750
Msa0003220 MtrunA17_Chr3g0136911 34.946 1199 663 30 36 1182 53 1186 0.0 665
Msa0003220 MtrunA17_Chr8g0375171 34.413 1235 690 31 1 1182 17 1184 0.0 660
Msa0003220 MtrunA17_Chr4g0069391 26.960 1250 711 41 40 1175 29 1190 1.32e-102 352
Msa0003220 MtrunA17_Chr3g0142431 47.234 235 117 1 948 1175 2 236 3.95e-68 229
Msa0003220 MtrunA17_Chr3g0142441 36.426 291 158 6 551 828 1 277 8.84e-48 172
Msa0003220 MtrunA17_Chr4g0016641 26.829 369 235 6 782 1120 653 1016 4.55e-35 145
Msa0003220 MtrunA17_CPg0493041 26.829 369 235 6 782 1120 653 1016 4.55e-35 145
Msa0003220 MtrunA17_Chr1g0154941 36.364 187 100 6 28 214 15 182 2.22e-28 113
Msa0003220 MtrunA17_Chr1g0159041 25.407 307 184 9 709 1013 53 316 1.05e-20 94.7
Msa0003220 MtrunA17_Chr4g0015541 30.233 129 75 2 985 1098 1 129 3.32e-12 68.9
Msa0003220 MtrunA17_Chr1g0156761 62.712 59 13 1 419 477 21 70 3.54e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0003220 AT4G21710.1 94.426 1184 66 0 8 1191 5 1188 0.0 2345
Msa0003220 AT5G45140.2 36.379 1204 692 23 4 1183 7 1160 0.0 736
Msa0003220 AT5G45140.1 36.379 1204 692 23 4 1183 7 1160 0.0 736
Msa0003220 AT3G23780.1 34.992 1226 685 27 4 1182 10 1170 0.0 652
Msa0003220 AT3G23780.2 34.992 1226 685 27 4 1182 10 1170 0.0 652
Msa0003220 AT3G18090.1 36.029 1113 604 24 117 1182 2 1053 0.0 622
Msa0003220 AT3G18090.2 34.139 952 526 23 117 1028 2 892 1.64e-149 472
Msa0003220 AT3G18090.3 34.247 949 523 23 117 1025 2 889 2.92e-149 472
Msa0003220 AT5G45140.3 34.568 810 471 17 28 823 31 795 4.07e-144 456
Msa0003220 AT1G29940.1 26.278 1252 736 34 36 1189 16 1178 1.87e-106 363
Msa0003220 ATCG00190.1 28.267 375 228 9 782 1123 650 1016 6.56e-34 142

Find 327 sgRNAs with CRISPR-Local

Find 696 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCCATCCATCACTGATTT+TGG 0.116658 1_1:+5734721 Msa0003220:CDS
TCCTATCATTATTGTGTTTC+GGG 0.145166 1_1:+5730696 Msa0003220:CDS
ATCAGGCTCCTTTCTTCTTT+TGG 0.174870 1_1:-5737420 None:intergenic
ACTCACTTGCTACTGGTAAT+TGG 0.182380 1_1:+5732293 Msa0003220:CDS
ACTCTTGTCAAAGAAGATTT+TGG 0.189211 1_1:+5735455 Msa0003220:CDS
ACCTCTTTAGTAAGCATTCT+TGG 0.208895 1_1:-5737382 None:intergenic
CGTCTTCCTCTTCCATTTGC+TGG 0.232324 1_1:-5728128 None:intergenic
TATTCCTACCAGGGTTCTTC+AGG 0.232935 1_1:+5730631 Msa0003220:intron
GGAGGTTATTTCATTATTAA+TGG 0.245615 1_1:+5730319 Msa0003220:CDS
CTATCTCCTGCATGGTGTTC+TGG 0.246403 1_1:-5728254 None:intergenic
TGGGTTAAGAGGTATGTTTC+AGG 0.247868 1_1:-5737674 None:intergenic
ATGCTTCAACCTTTGGTAAT+AGG 0.250696 1_1:-5736904 None:intergenic
GCATGGTTCTTATGATAAAT+TGG 0.252027 1_1:+5735583 Msa0003220:CDS
TATTGTTCATTGTATTTATA+CGG 0.254638 1_1:-5737861 None:intergenic
GTGGCCATTTCATGTTATTC+TGG 0.256038 1_1:+5735235 Msa0003220:CDS
TTCCTATCATTATTGTGTTT+CGG 0.257329 1_1:+5730695 Msa0003220:CDS
GTATCAGAATATGCTTCTTC+TGG 0.286298 1_1:-5734683 None:intergenic
AAAATACTCACTTGTCCTTC+TGG 0.287121 1_1:-5733118 None:intergenic
CAGGTTGCACTTGATTATAT+TGG 0.290828 1_1:+5731563 Msa0003220:intron
TAACTAGACCGAAGCATAAT+AGG 0.291712 1_1:-5730232 None:intergenic
ATTATTGTGTTTCGGGCATT+GGG 0.302301 1_1:+5730703 Msa0003220:CDS
CTCACTTGCTACTGGTAATT+GGG 0.304657 1_1:+5732294 Msa0003220:CDS
GATCAAACAGTCTTTCCTTT+AGG 0.305989 1_1:-5737073 None:intergenic
TTCAGCAGCATATCCTATTC+TGG 0.311071 1_1:+5733278 Msa0003220:CDS
CATTATTGTGTTTCGGGCAT+TGG 0.315005 1_1:+5730702 Msa0003220:CDS
TCTGGTGAGGATGTTATTAT+TGG 0.320139 1_1:+5735729 Msa0003220:CDS
TGTTTATCCACAATGAATAA+AGG 0.325748 1_1:-5734290 None:intergenic
CTGCGCATATATACAGATTA+TGG 0.328114 1_1:+5734254 Msa0003220:CDS
TTCCTAAGCCTAGCAGCTTT+AGG 0.332431 1_1:-5729386 None:intergenic
GAACAAAATGATGATGGATT+TGG 0.335608 1_1:+5728086 Msa0003220:exon
CTTACAGTAACATCTGTAAA+AGG 0.337964 1_1:-5736344 None:intergenic
GTATCACAAATGCTTCTTCC+AGG 0.341847 1_1:-5730807 None:intergenic
TGTGGATTGACAATAATATC+AGG 0.342341 1_1:-5736230 None:intergenic
CACCCAAACAAAACGCATTC+AGG 0.346587 1_1:-5737810 None:intergenic
CAATAGACCGTGGCTTCTTT+CGG 0.354605 1_1:+5735296 Msa0003220:CDS
CCCACATAAGCATACTTGTT+AGG 0.355406 1_1:-5730412 None:intergenic
GACCTGGCAGGTCCTTTACT+TGG 0.355932 1_1:+5731957 Msa0003220:CDS
CGGCTACTTCTGTGCGCACT+TGG 0.356082 1_1:+5731888 Msa0003220:CDS
CAACCATATGCTTCAACCTT+TGG 0.356626 1_1:-5736911 None:intergenic
TCACAGCCCAAGCATCTTCT+TGG 0.359604 1_1:-5728167 None:intergenic
AATGTCCTAACCAACATATC+AGG 0.360678 1_1:-5733497 None:intergenic
TGTTTGTGCGCATGCTCTCT+CGG 0.371135 1_1:+5730482 Msa0003220:CDS
CGTGATGGAGGTCTTCGATT+TGG 0.372874 1_1:+5737005 Msa0003220:CDS
TTGCTTTGATAGCAAATTGC+AGG 0.373151 1_1:-5732246 None:intergenic
GGCAAAATAACGAGGAAAAC+TGG 0.376797 1_1:-5737977 None:intergenic
GAAGATGATAGGGATCATTA+TGG 0.380040 1_1:+5731921 Msa0003220:CDS
CCATCAGATTCCGTCATCAT+TGG 0.381582 1_1:-5729344 None:intergenic
GGTGAAGAATCTGGCCTTGA+TGG 0.390834 1_1:+5733239 Msa0003220:CDS
AGTTTACGCCATAGTGAAAC+TGG 0.391101 1_1:+5735825 Msa0003220:CDS
TTGATGTTAATACTGAAGTT+GGG 0.392600 1_1:+5734204 Msa0003220:CDS
TCTAACTACCTCAGCGAAAT+CGG 0.395109 1_1:-5728337 None:intergenic
TTACCAAAGGTTGAAGCATA+TGG 0.395470 1_1:+5736908 Msa0003220:CDS
GGAATTTCAGTTCGAATGTA+AGG 0.396044 1_1:-5730676 None:intergenic
CTACTATTCCAGTTTCACTA+TGG 0.397112 1_1:-5735833 None:intergenic
GGCGGAGGGCTGAAGATGAT+AGG 0.397377 1_1:+5731910 Msa0003220:CDS
CGAAGATTGAATTCTCCTAT+AGG 0.398531 1_1:+5732499 Msa0003220:CDS
GGAGTTGCTTCGTCCTTCCC+TGG 0.399636 1_1:+5730789 Msa0003220:CDS
CTGTGGACTGGTGAAGAATC+TGG 0.401471 1_1:+5733230 Msa0003220:CDS
TTCTGTGCGCACTTGGGCGG+AGG 0.402357 1_1:+5731895 Msa0003220:CDS
GTTTATTTCTTGAACTAGAA+AGG 0.402999 1_1:-5737652 None:intergenic
TCATGCCATCCACCATCTTC+CGG 0.404494 1_1:-5734449 None:intergenic
ACCTGATTGTGGTCAGGAAA+TGG 0.407698 1_1:-5734764 None:intergenic
CCAGGATTATGCTGAGATTC+GGG 0.408643 1_1:-5728306 None:intergenic
GACATGCCCTGGACTGTAGA+AGG 0.418551 1_1:+5736200 Msa0003220:CDS
GCCAGGATTATGCTGAGATT+CGG 0.418840 1_1:-5728307 None:intergenic
TACATTACCAGATGCGATAT+AGG 0.422509 1_1:-5737720 None:intergenic
CAATTACCTTCACGTCCTAT+AGG 0.424102 1_1:-5732514 None:intergenic
GGTTGAGATTCGTGAAAGTA+AGG 0.425517 1_1:+5736087 Msa0003220:CDS
ACCATGGTGTTGGCTCTATC+CGG 0.425755 1_1:-5735482 None:intergenic
ATAACCAGAATAACATGAAA+TGG 0.429288 1_1:-5735239 None:intergenic
ATTAGGTTCCTATTATGCTT+CGG 0.429514 1_1:+5730224 Msa0003220:intron
GAATTTGAACAAAATGATGA+TGG 0.431624 1_1:+5728080 Msa0003220:exon
TCAGTAGCCTTTCAAGTGTT+GGG 0.432696 1_1:+5737574 Msa0003220:three_prime_UTR
CTTAAAGACATAGACATGAT+TGG 0.434546 1_1:-5730380 None:intergenic
CTCGCTTCCTATATCGCATC+TGG 0.435756 1_1:+5737713 Msa0003220:three_prime_UTR
GTTGATGTTAATACTGAAGT+TGG 0.437128 1_1:+5734203 Msa0003220:CDS
GAACAAAACTGACATTGTTC+AGG 0.439610 1_1:+5737190 Msa0003220:CDS
CATTCATTCTTTGCAGCAAA+GGG 0.440049 1_1:+5734337 Msa0003220:CDS
TTGTCTCAAAACCACGCATT+TGG 0.441327 1_1:-5736827 None:intergenic
TCAGTCTGCTATGGGAAAAC+AGG 0.442211 1_1:+5734891 Msa0003220:CDS
TCTAAGAGGGTCATTAAGAA+AGG 0.442549 1_1:+5729443 Msa0003220:CDS
TTCGTAAATGGTTGCTGGAT+GGG 0.443022 1_1:+5733461 Msa0003220:CDS
GAGAAGGATTTGACCGAGCT+TGG 0.443750 1_1:+5730277 Msa0003220:CDS
ATTATGCAGCTGTCTTGGTT+TGG 0.447375 1_1:-5733062 None:intergenic
CTCTCTCGGGCTAGTGCCAA+AGG 0.447596 1_1:+5730496 Msa0003220:CDS
CGAGGTAGTGATGAGGCTAC+TGG 0.448765 1_1:-5737694 None:intergenic
ACATATATGCTATGACTTTG+CGG 0.448778 1_1:+5730753 Msa0003220:CDS
GGGGAAGGTGGCTGCCCACA+TGG 0.449187 1_1:+5736301 Msa0003220:CDS
ATTTGTGATACAAAATCAAC+AGG 0.449429 1_1:+5730819 Msa0003220:CDS
TGAACAATACCATTCGAAAC+TGG 0.450071 1_1:-5734939 None:intergenic
TCACGTGACCGCCCCTCAGC+AGG 0.450469 1_1:-5736987 None:intergenic
GAATGTCATTTCCCAACAAA+AGG 0.450473 1_1:-5737607 None:intergenic
TCAAAATTTACAATTCCAGC+AGG 0.453217 1_1:-5735129 None:intergenic
ATGGTGCAGTGTGTTGATAA+TGG 0.455789 1_1:+5732211 Msa0003220:intron
GCTGCTCTTCCAAGAGCTAA+TGG 0.455955 1_1:+5737345 Msa0003220:CDS
TCTCAACCCATCAGCATTTG+TGG 0.456068 1_1:-5736072 None:intergenic
ATCAGTAGCCTTTCAAGTGT+TGG 0.458400 1_1:+5737573 Msa0003220:three_prime_UTR
GATGAGGCTACTGGGTTAAG+AGG 0.459410 1_1:-5737685 None:intergenic
GCGAAATCGGACTGATGGCC+AGG 0.459680 1_1:-5728324 None:intergenic
GGTGATGCCTTCTACAGTCC+AGG 0.461573 1_1:-5736207 None:intergenic
ACGATTTATAAGATAAGCTT+CGG 0.462716 1_1:+5729302 Msa0003220:CDS
TGTTGCTCTTCCTGAGATAG+AGG 0.464497 1_1:-5735762 None:intergenic
AGTAAGCATTCTTGGAGCTA+TGG 0.468466 1_1:-5737374 None:intergenic
GCCCGAAACACAATAATGAT+AGG 0.468885 1_1:-5730697 None:intergenic
AGCCACGGTCTATTGATGAT+TGG 0.469458 1_1:-5735288 None:intergenic
ATACCTTCTCGAATGACAAT+TGG 0.469660 1_1:+5736257 Msa0003220:CDS
TCCAAGAATGCTTACTAAAG+AGG 0.470301 1_1:+5737381 Msa0003220:CDS
TGGTGCAGTGTGTTGATAAT+GGG 0.471555 1_1:+5732212 Msa0003220:intron
TGGCCATAGCCATTAGCTCT+TGG 0.472606 1_1:-5737354 None:intergenic
AATACAATGAACAATACATA+TGG 0.473339 1_1:+5737868 Msa0003220:three_prime_UTR
GAAAGTTGACTAGAGATGTC+AGG 0.473617 1_1:+5732102 Msa0003220:CDS
TGGAAATAAGAGGCTGGACC+TGG 0.473901 1_1:+5731941 Msa0003220:CDS
TGTCCTTCTGGTGTTTCTGC+CGG 0.475033 1_1:-5733106 None:intergenic
AAACAGGGCACAAGAGTGTC+TGG 0.475708 1_1:+5735711 Msa0003220:intron
TGAGAAGGTTCTTATTGCTC+AGG 0.475780 1_1:+5730345 Msa0003220:CDS
CTTCATTGCTTAGGATACCT+TGG 0.476392 1_1:+5735032 Msa0003220:intron
ACCATTTCCTGACCACAATC+AGG 0.477185 1_1:+5734763 Msa0003220:CDS
AAATCACCCAAGAAGATGCT+TGG 0.478143 1_1:+5728160 Msa0003220:CDS
AGTCATAGCATATATGTTCA+AGG 0.478209 1_1:-5730747 None:intergenic
ACCTAACAAGTATGCTTATG+TGG 0.478358 1_1:+5730411 Msa0003220:CDS
CAGTCGTCCTTTATTCATTG+TGG 0.479150 1_1:+5734283 Msa0003220:CDS
TGTGAATTATGCAGCTGTCT+TGG 0.480800 1_1:-5733067 None:intergenic
TGCTAAGGACATCCTTCAAA+AGG 0.481337 1_1:+5731720 Msa0003220:CDS
ACAGCTGCATAATTCACAAT+GGG 0.482151 1_1:+5733072 Msa0003220:CDS
AAACGAATTCGACCAGCAAA+TGG 0.482700 1_1:+5728116 Msa0003220:CDS
CAGGCCCTCGTCCACGAGAA+TGG 0.484101 1_1:-5736944 None:intergenic
TCTTCGCAAGTGTGATAAAG+TGG 0.484935 1_1:-5732482 None:intergenic
ATATTTACCTGATTGTGGTC+AGG 0.486379 1_1:-5734770 None:intergenic
GACATTCCATTTATATGTCA+AGG 0.489193 1_1:+5737623 Msa0003220:three_prime_UTR
TTCCTAAAGCTGCTAGGCTT+AGG 0.490381 1_1:+5729384 Msa0003220:CDS
CATTGAGAAAGCTGAGACGT+CGG 0.490993 1_1:+5733516 Msa0003220:CDS
TACCTTGCCAATGAAAACTT+TGG 0.492786 1_1:-5729504 None:intergenic
CACAGCCCAAGCATCTTCTT+GGG 0.493374 1_1:-5728166 None:intergenic
TAATACGTATCAGTCTGCTA+TGG 0.493398 1_1:+5734882 Msa0003220:CDS
ATGCTTCCCCATGTTGGTGT+TGG 0.495081 1_1:+5731745 Msa0003220:CDS
AATCACCCAAGAAGATGCTT+GGG 0.495727 1_1:+5728161 Msa0003220:CDS
GATATATTCTATAAAGCCCT+TGG 0.497908 1_1:-5734480 None:intergenic
TACTAGAGCTGGAGTGTCAC+AGG 0.497939 1_1:+5732336 Msa0003220:CDS
ATTCCTACCAGGGTTCTTCA+GGG 0.499140 1_1:+5730632 Msa0003220:intron
CTTCAGGAATCACCGGAAGA+TGG 0.499566 1_1:+5734437 Msa0003220:intron
GTTTGTGCGCATGCTCTCTC+GGG 0.501249 1_1:+5730483 Msa0003220:CDS
TATTATTTAGGCCTGTGGAC+TGG 0.503091 1_1:+5733218 Msa0003220:intron
AATGCTGCGGGTACTAGAGC+TGG 0.503185 1_1:+5732325 Msa0003220:CDS
TGCTATGGGAAAACAGGCAA+TGG 0.504068 1_1:+5734897 Msa0003220:CDS
CTAAAGAGTCCGCCAAGTAA+AGG 0.504424 1_1:-5731969 None:intergenic
CAGCTTATCGAGTGTATCAT+GGG 0.504678 1_1:+5736281 Msa0003220:CDS
CATTGTTTCCTAAAGCTGCT+AGG 0.505265 1_1:+5729378 Msa0003220:CDS
AGTACTGACATTAATTGTCA+TGG 0.507465 1_1:-5734534 None:intergenic
GCGACCCTGATATGTTGGTT+AGG 0.509462 1_1:+5733492 Msa0003220:CDS
TTTCGTAAATGGTTGCTGGA+TGG 0.509610 1_1:+5733460 Msa0003220:CDS
TCAGCTTATCGAGTGTATCA+TGG 0.509852 1_1:+5736280 Msa0003220:CDS
TGTCAGGGGTTATGTGCAAA+AGG 0.510229 1_1:+5732118 Msa0003220:CDS
ATGCTTATGTGGGTGAAGTT+CGG 0.510668 1_1:+5730422 Msa0003220:CDS
TCTGTGCGCACTTGGGCGGA+GGG 0.511484 1_1:+5731896 Msa0003220:CDS
ACAATGTACAATGGTCATAC+AGG 0.512140 1_1:+5736846 Msa0003220:CDS
AAGATCCATTCTCGTGGACG+AGG 0.512805 1_1:+5736939 Msa0003220:CDS
CCCGAATCTCAGCATAATCC+TGG 0.513356 1_1:+5728306 Msa0003220:CDS
TCCATTTCTTCAGGAATCAC+CGG 0.514281 1_1:+5734430 Msa0003220:intron
CTTAAGTACTCACTTGCTAC+TGG 0.514903 1_1:+5732286 Msa0003220:CDS
TATGATAAATTGGATGATGA+TGG 0.515681 1_1:+5735593 Msa0003220:CDS
GGCTACTTCTGTGCGCACTT+GGG 0.516303 1_1:+5731889 Msa0003220:CDS
AAGAGCAGCTTACAAGCATA+AGG 0.518433 1_1:-5737331 None:intergenic
TGGGCTATTATTTAGGCCTG+TGG 0.518601 1_1:+5733213 Msa0003220:intron
GGGATCATTATGGAAATAAG+AGG 0.519050 1_1:+5731931 Msa0003220:CDS
ACTTGGCGGACTCTTTAGAA+TGG 0.520767 1_1:+5731974 Msa0003220:CDS
CTAAGAGGGTCATTAAGAAA+GGG 0.522466 1_1:+5729444 Msa0003220:CDS
ATAAAAGACCAAAAGAAGAA+AGG 0.524792 1_1:+5737412 Msa0003220:CDS
ATTGAGAAAGCTGAGACGTC+GGG 0.524806 1_1:+5733517 Msa0003220:CDS
AAATAACCTCCTTGATCATA+CGG 0.525242 1_1:-5730307 None:intergenic
ATATTATCCTCAAAAGCCAC+TGG 0.525743 1_1:+5735065 Msa0003220:CDS
GTATGTTGATGTTTCTAAGA+GGG 0.526036 1_1:+5729430 Msa0003220:CDS
AATAAGAGGCTGGACCTGGC+AGG 0.528479 1_1:+5731945 Msa0003220:CDS
GTCATTTCCCAACACTTGAA+AGG 0.528559 1_1:-5737581 None:intergenic
GCTGAGGGGCGGTCACGTGA+TGG 0.528589 1_1:+5736990 Msa0003220:CDS
TGTGGGTGAAGTTCGGTCCA+TGG 0.531833 1_1:+5730429 Msa0003220:CDS
ATGTTCAAGGATATCCTTGT+CGG 0.531866 1_1:-5730734 None:intergenic
AGCAAAGCTTTACACAAATG+TGG 0.532243 1_1:+5736801 Msa0003220:CDS
TGTATGTTGATGTTTCTAAG+AGG 0.534291 1_1:+5729429 Msa0003220:CDS
CTGGCAGGTCCTTTACTTGG+CGG 0.536896 1_1:+5731960 Msa0003220:CDS
ATGGCATGATCTTGTGTCCA+AGG 0.537210 1_1:+5734463 Msa0003220:CDS
CGAAGGAATCAAGCTGTTGA+CGG 0.538937 1_1:-5728221 None:intergenic
CTTCCAAGAGCTAATGGCTA+TGG 0.539070 1_1:+5737351 Msa0003220:CDS
TCTCTCGGGCTAGTGCCAAA+GGG 0.540161 1_1:+5730497 Msa0003220:CDS
GGAGAGTGTCCGTATGATCA+AGG 0.540440 1_1:+5730298 Msa0003220:CDS
ACATTCATTCTTTGCAGCAA+AGG 0.540642 1_1:+5734336 Msa0003220:CDS
AATACGTATCAGTCTGCTAT+GGG 0.541188 1_1:+5734883 Msa0003220:CDS
AATTCGAAGTTCAAATTATG+CGG 0.541633 1_1:-5728062 None:intergenic
ATACTCTCCAACACCAACAT+GGG 0.542034 1_1:-5731752 None:intergenic
CGTGATTGCATGATTGCTCA+TGG 0.542766 1_1:+5737038 Msa0003220:CDS
CTGTTGACCACAAATGCTGA+TGG 0.543482 1_1:+5736065 Msa0003220:CDS
GCTATGGGAAAACAGGCAAT+GGG 0.544962 1_1:+5734898 Msa0003220:CDS
GGGAAGGTGGCTGCCCACAT+GGG 0.545068 1_1:+5736302 Msa0003220:CDS
CAGTAGTAGACACGGTCAGA+AGG 0.545602 1_1:+5736148 Msa0003220:CDS
CTTTGCGGATACTCAAATGA+TGG 0.546341 1_1:+5730768 Msa0003220:CDS
GCTGCCCACATGGGAAAAGA+AGG 0.546470 1_1:+5736311 Msa0003220:CDS
TCTTACAAGGCAACCTGCTG+AGG 0.547845 1_1:+5736974 Msa0003220:CDS
CAGATTCTTCACCAGTCCAC+AGG 0.550341 1_1:-5733229 None:intergenic
GTCATTAAGAAAGGGCATGA+TGG 0.550930 1_1:+5729452 Msa0003220:CDS
TATCACAAATGCTTCTTCCA+GGG 0.552036 1_1:-5730806 None:intergenic
AACAGGATCTTGTACAAGCA+AGG 0.552112 1_1:+5734654 Msa0003220:intron
ATACCATATTTACCTGATTG+TGG 0.553223 1_1:-5734775 None:intergenic
CACCCAAAATCAGTGATGGA+TGG 0.554350 1_1:-5734724 None:intergenic
GTGTGATAAAGTGGAAGCAT+AGG 0.555572 1_1:-5732473 None:intergenic
TACCATTCGAAACTGGTAGT+TGG 0.555979 1_1:-5734932 None:intergenic
ATGTCTATGTCTTTAAGAAG+AGG 0.558200 1_1:+5730386 Msa0003220:CDS
AACTGTAATGTATACCATCA+AGG 0.558598 1_1:-5733253 None:intergenic
TTGATGGTATACATTACAGT+TGG 0.558896 1_1:+5733255 Msa0003220:CDS
GTAGCTTGGGGAATCACCGC+AGG 0.559718 1_1:-5733431 None:intergenic
CATTATTAATGGCAGTGAGA+AGG 0.561304 1_1:+5730330 Msa0003220:CDS
ACGAAAATGAAGATGCTCCA+TGG 0.561361 1_1:-5735100 None:intergenic
TCATCGCGACCCTGATATGT+TGG 0.561873 1_1:+5733487 Msa0003220:CDS
TGGAGCCGCTCACTTCCTAA+AGG 0.562196 1_1:+5737058 Msa0003220:CDS
AATACTCTCCAACACCAACA+TGG 0.562396 1_1:-5731753 None:intergenic
CACGGTCAGAAGGGGACTGT+TGG 0.562916 1_1:+5736158 Msa0003220:CDS
TCTGTTCGAATACCACAGAT+TGG 0.563843 1_1:+5736116 Msa0003220:CDS
AAAGTTGACTAGAGATGTCA+GGG 0.564452 1_1:+5732103 Msa0003220:CDS
GTGGATTGACAATAATATCA+GGG 0.564760 1_1:-5736229 None:intergenic
TACTTCTGTGCGCACTTGGG+CGG 0.565950 1_1:+5731892 Msa0003220:CDS
TATTCATTGTGGATAAACAA+AGG 0.566213 1_1:+5734294 Msa0003220:CDS
TTTGAGTAAGCCAATGATGA+CGG 0.566626 1_1:+5729334 Msa0003220:CDS
AGGTCTTCGATTTGGAGAGA+TGG 0.567077 1_1:+5737013 Msa0003220:CDS
ATTCGACCAGCAAATGGAAG+AGG 0.569777 1_1:+5728122 Msa0003220:CDS
CCTAATCTGCAGGTATGCTA+AGG 0.570029 1_1:+5731705 Msa0003220:intron
CTCTTCCTGAGATAGAGGAG+TGG 0.573182 1_1:-5735757 None:intergenic
ATACACAAGAAGACATGCCC+TGG 0.575210 1_1:+5736189 Msa0003220:CDS
TCATTATGGAAATAAGAGGC+TGG 0.580811 1_1:+5731935 Msa0003220:CDS
CGAGTGTATCATGGGGAAGG+TGG 0.580823 1_1:+5736289 Msa0003220:CDS
TCACTTGCTACTGGTAATTG+GGG 0.581100 1_1:+5732295 Msa0003220:CDS
GAGGGGCGGTCACGTGATGG+AGG 0.582017 1_1:+5736993 Msa0003220:CDS
CGCCAAGTAAAGGACCTGCC+AGG 0.582885 1_1:-5731959 None:intergenic
AGTAGTAGACACGGTCAGAA+GGG 0.585599 1_1:+5736149 Msa0003220:CDS
ATGCGCACAAACATAGTGCT+AGG 0.586320 1_1:-5730472 None:intergenic
GAGGTAGTGATGAGGCTACT+GGG 0.588391 1_1:-5737693 None:intergenic
GCAAAGCTTTACACAAATGT+GGG 0.589460 1_1:+5736802 Msa0003220:CDS
GTACTTAAGTCCACTTGTGA+TGG 0.591849 1_1:-5732272 None:intergenic
TTCATCAACTATCTCCTGCA+TGG 0.592493 1_1:-5728262 None:intergenic
ATCCACAGCGTTCACACACG+TGG 0.592592 1_1:-5737115 None:intergenic
TTCAACCTTTGGTAATAGGT+AGG 0.593041 1_1:-5736900 None:intergenic
TTGGGCCTACCTATTACCAA+AGG 0.594097 1_1:+5736895 Msa0003220:CDS
ATATGCGCAGTTCTTTAAGA+CGG 0.594553 1_1:-5734241 None:intergenic
TCCACAGATATATCATTCAC+CGG 0.598759 1_1:+5731868 Msa0003220:intron
GACAGCTGCATAATTCACAA+TGG 0.600518 1_1:+5733071 Msa0003220:CDS
ACAATGGGGAATGATGTGTC+CGG 0.600917 1_1:+5733087 Msa0003220:CDS
CTTACAAGGCAACCTGCTGA+GGG 0.601495 1_1:+5736975 Msa0003220:CDS
AAGGAGATGCTTCCCCATGT+TGG 0.602787 1_1:+5731739 Msa0003220:CDS
ATTCATCCAGAACACCATGC+AGG 0.603313 1_1:+5728248 Msa0003220:CDS
ACTGCTTCCTCTCGTGAACG+TGG 0.603906 1_1:+5737484 Msa0003220:three_prime_UTR
TGACCAATTGTCATTCGAGA+AGG 0.604159 1_1:-5736260 None:intergenic
GAAAGGGCATGATGGTGAAG+AGG 0.604192 1_1:+5729460 Msa0003220:CDS
ATGTCCTAACCAACATATCA+GGG 0.604790 1_1:-5733496 None:intergenic
AGAATATATCGACACAGAAG+AGG 0.605449 1_1:+5734493 Msa0003220:CDS
ATACGGACACTCTCCAAGCT+CGG 0.606508 1_1:-5730290 None:intergenic
ATTGGGGTTTGTCGCCGACA+AGG 0.606610 1_1:+5730720 Msa0003220:CDS
TTAGAAACATCAACATACAA+AGG 0.606950 1_1:-5729425 None:intergenic
CCTCAGCGAAATCGGACTGA+TGG 0.607135 1_1:-5728329 None:intergenic
AGTCAACATGGAATAAAGAC+TGG 0.607208 1_1:-5737464 None:intergenic
TGGCATGATCTTGTGTCCAA+GGG 0.607611 1_1:+5734464 Msa0003220:CDS
CCAATGATGACGGAATCTGA+TGG 0.608626 1_1:+5729344 Msa0003220:CDS
ACGAGAGGAAGCAGTCAACA+TGG 0.608706 1_1:-5737476 None:intergenic
GCGGAGGGCTGAAGATGATA+GGG 0.609839 1_1:+5731911 Msa0003220:CDS
TGATGTTAATACTGAAGTTG+GGG 0.611461 1_1:+5734205 Msa0003220:CDS
CTGAATTTGTCACCAATCTG+TGG 0.613238 1_1:-5736128 None:intergenic
AATCACCGGAAGATGGTGGA+TGG 0.615234 1_1:+5734444 Msa0003220:CDS
ACAAATGCTTCTTCCAGGGA+AGG 0.617068 1_1:-5730802 None:intergenic
TATCGAGTGTATCATGGGGA+AGG 0.618510 1_1:+5736286 Msa0003220:CDS
ATAATATAAAACATACGCCA+AGG 0.620175 1_1:-5735049 None:intergenic
TGCCTTGTAAGAATCTGCAC+AGG 0.620516 1_1:-5736963 None:intergenic
GTGGTCAGGAAATGGTATGA+TGG 0.622245 1_1:-5734756 None:intergenic
TCTTTCCTTTAGGAAGTGAG+CGG 0.624165 1_1:-5737063 None:intergenic
GTAGTAGACACGGTCAGAAG+GGG 0.624190 1_1:+5736150 Msa0003220:CDS
GGGTCGAATTTCGATATCAG+CGG 0.625955 1_1:-5728286 None:intergenic
TGTTGACCACAAATGCTGAT+GGG 0.626117 1_1:+5736066 Msa0003220:CDS
CAGGAATCACCGGAAGATGG+TGG 0.626286 1_1:+5734440 Msa0003220:intron
GGCCTGTGCAGATTCTTACA+AGG 0.626814 1_1:+5736961 Msa0003220:CDS
AATTCTCCTATAGGACGTGA+AGG 0.626912 1_1:+5732508 Msa0003220:CDS
ATAACATGAAATGGCCACAA+TGG 0.627397 1_1:-5735230 None:intergenic
ACTATATCAGAATTCAGAGA+AGG 0.627949 1_1:+5730261 Msa0003220:CDS
CATACACCCAAAATCAGTGA+TGG 0.628250 1_1:-5734728 None:intergenic
ATTCGAGAAGGTATAGCATG+TGG 0.628340 1_1:-5736248 None:intergenic
ATCAACTGTAGGTGTAACCA+AGG 0.629048 1_1:+5731595 Msa0003220:CDS
ACTGGTCACTACGAGAGCCA+TGG 0.630859 1_1:+5735083 Msa0003220:CDS
ATGGCTCTCGTAGTGACCAG+TGG 0.632635 1_1:-5735081 None:intergenic
TACCAACTACCAGTTTCGAA+TGG 0.633775 1_1:+5734930 Msa0003220:CDS
AGCAAACAGACCTATATGAA+CGG 0.634285 1_1:-5735330 None:intergenic
CCTAACAAGTATGCTTATGT+GGG 0.634295 1_1:+5730412 Msa0003220:CDS
GTGATGCCTTCTACAGTCCA+GGG 0.636479 1_1:-5736206 None:intergenic
CAAGGCAACCTGCTGAGGGG+CGG 0.636674 1_1:+5736979 Msa0003220:CDS
GTTGAGATTCGTGAAAGTAA+GGG 0.638402 1_1:+5736088 Msa0003220:CDS
CTCTCGGGCTAGTGCCAAAG+GGG 0.643628 1_1:+5730498 Msa0003220:CDS
GTTCTGGATGAATTCATCGA+AGG 0.644808 1_1:-5728238 None:intergenic
TATGTAGGAAATTTCTCCTG+CGG 0.653804 1_1:+5733415 Msa0003220:intron
CAGATGCGATATAGGAAGCG+AGG 0.657139 1_1:-5737712 None:intergenic
CTATCTCAGGAAGAGCAACA+AGG 0.657616 1_1:+5735765 Msa0003220:CDS
CAAGTGCGCACAGAAGTAGC+CGG 0.657947 1_1:-5731887 None:intergenic
CAAAATTTACAATTCCAGCA+GGG 0.661317 1_1:-5735128 None:intergenic
GATGACAAGATCCATTCTCG+TGG 0.663053 1_1:+5736933 Msa0003220:CDS
ATAGAGACCGAAAGAAGCCA+CGG 0.663349 1_1:-5735303 None:intergenic
GTGTGATCCACGTTCACGAG+AGG 0.663833 1_1:-5737491 None:intergenic
TAGGAAGCGAGGTAGTGATG+AGG 0.663942 1_1:-5737701 None:intergenic
GACAAATTCAGTAGTAGACA+CGG 0.664921 1_1:+5736140 Msa0003220:CDS
TTATTGTGTTTCGGGCATTG+GGG 0.667801 1_1:+5730704 Msa0003220:CDS
AAATGTGGGTACCAAATGCG+TGG 0.670341 1_1:+5736816 Msa0003220:CDS
GAACGTGGATCACACACACA+TGG 0.670875 1_1:+5737499 Msa0003220:three_prime_UTR
TGTACAATGGTCATACAGGA+AGG 0.673197 1_1:+5736850 Msa0003220:CDS
TGGATTGACAATAATATCAG+GGG 0.673711 1_1:-5736228 None:intergenic
TTTGGTAATAGGTAGGCCCA+AGG 0.674216 1_1:-5736893 None:intergenic
AATGGAAGAGGAAGACGATG+AGG 0.677093 1_1:+5728134 Msa0003220:CDS
CCATCAGTCCGATTTCGCTG+AGG 0.678918 1_1:+5728329 Msa0003220:CDS
GCAGACTGATACGTATTACG+AGG 0.679371 1_1:-5734877 None:intergenic
CAGACTGATACGTATTACGA+GGG 0.679597 1_1:-5734876 None:intergenic
TGTGCCATAGAATGCCATTG+TGG 0.679926 1_1:+5735216 Msa0003220:intron
AGATCCATTCTCGTGGACGA+GGG 0.680250 1_1:+5736940 Msa0003220:CDS
TACTCTCCAACACCAACATG+GGG 0.682957 1_1:-5731751 None:intergenic
GGGCACAAGAGTGTCTGGTG+AGG 0.687347 1_1:+5735716 Msa0003220:intron
CGCACAAACATAGTGCTAGG+TGG 0.691615 1_1:-5730469 None:intergenic
GCAGTGTGTTGATAATGGGA+AGG 0.696609 1_1:+5732216 Msa0003220:intron
CACTTGCTACTGGTAATTGG+GGG 0.696854 1_1:+5732296 Msa0003220:CDS
AGCTTATCGAGTGTATCATG+GGG 0.704452 1_1:+5736282 Msa0003220:CDS
TGTCCGGCAGAAACACCAGA+AGG 0.711936 1_1:+5733103 Msa0003220:CDS
AACCAATCATCAATAGACCG+TGG 0.713532 1_1:+5735286 Msa0003220:CDS
GCCGGATAGAGCCAACACCA+TGG 0.715047 1_1:+5735481 Msa0003220:CDS
TTACAAGGCAACCTGCTGAG+GGG 0.720916 1_1:+5736976 Msa0003220:CDS
CAGCTGCATAATTCACAATG+GGG 0.732440 1_1:+5733073 Msa0003220:CDS
AGACTGATACGTATTACGAG+GGG 0.743924 1_1:-5734875 None:intergenic
GTCCACGTGTGTGAACGCTG+TGG 0.744978 1_1:+5737113 Msa0003220:CDS
GAGTGTCCGTATGATCAAGG+AGG 0.751164 1_1:+5730301 Msa0003220:CDS
AAGTTGACTAGAGATGTCAG+GGG 0.803386 1_1:+5732104 Msa0003220:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAACCTATTTTATTATTA+CGG + chr1_1:5732840-5732859 Msa0003220:intron 10.0%
!! TTAAAATAGAATGTATTTAT+TGG + chr1_1:5733763-5733782 Msa0003220:intron 10.0%
!! ATTATCAATATAATAACAAA+AGG - chr1_1:5735171-5735190 None:intergenic 10.0%
!!! TATTATTAGATCTTATTTAA+TGG + chr1_1:5735909-5735928 Msa0003220:intron 10.0%
!!! ATTATTAGATCTTATTTAAT+GGG + chr1_1:5735910-5735929 Msa0003220:intron 10.0%
!! AGTTACAGATTATAAAAAAA+GGG - chr1_1:5729226-5729245 None:intergenic 15.0%
!! TAGTTACAGATTATAAAAAA+AGG - chr1_1:5729227-5729246 None:intergenic 15.0%
!!! TTTTTATAATCTGTAACTAA+CGG + chr1_1:5729228-5729247 Msa0003220:intron 15.0%
!! TAGTTTAGTATATTAGTATT+TGG + chr1_1:5729820-5729839 Msa0003220:intron 15.0%
!!! TTTTAAGTTATTTTATGATG+TGG + chr1_1:5730138-5730157 Msa0003220:intron 15.0%
!!! TTGTTATTATTCTACTTATT+TGG + chr1_1:5732013-5732032 Msa0003220:intron 15.0%
!!! GTAACTTTGATTTTTTTAAT+TGG - chr1_1:5732689-5732708 None:intergenic 15.0%
!! AAAAAATCAAAGTTACTTAA+TGG + chr1_1:5732693-5732712 Msa0003220:intron 15.0%
!!! TTATTATTTTTTGAGCAATT+TGG - chr1_1:5732734-5732753 None:intergenic 15.0%
!! AATAACCGTAATAATAAAAT+AGG - chr1_1:5732848-5732867 None:intergenic 15.0%
!! TATATAACAAGTAGTAATAT+AGG - chr1_1:5733157-5733176 None:intergenic 15.0%
!!! ACAAATTATTACTTTTATGA+AGG - chr1_1:5733352-5733371 None:intergenic 15.0%
!! TATTAAGTATTCTATATTTC+TGG + chr1_1:5733830-5733849 Msa0003220:intron 15.0%
!! AACTATTATTACAAGTTAAA+TGG + chr1_1:5733954-5733973 Msa0003220:intron 15.0%
!!! TATCATATTACATTTTTAAG+AGG + chr1_1:5734096-5734115 Msa0003220:intron 15.0%
!! TAAATAATTTCAAACAATGA+TGG - chr1_1:5734125-5734144 None:intergenic 15.0%
!!! TTATTAGATCTTATTTAATG+GGG + chr1_1:5735911-5735930 Msa0003220:intron 15.0%
!! TATTGTTCATTGTATTTATA+CGG - chr1_1:5737864-5737883 None:intergenic 15.0%
!!! TAATGAGTTAATAGTTTTTT+TGG + chr1_1:5737929-5737948 Msa0003220:three_prime_UTR 15.0%
!! TTCAATTAGATGATTAAATC+TGG + chr1_1:5728387-5728406 Msa0003220:intron 20.0%
!!! TTTCAATTTTCAATATAACG+TGG + chr1_1:5728424-5728443 Msa0003220:intron 20.0%
!! GATACTTCAAAAAAATATAG+CGG + chr1_1:5728534-5728553 Msa0003220:intron 20.0%
!!! TTTTGAAAATCTGTAACTAA+AGG + chr1_1:5729010-5729029 Msa0003220:intron 20.0%
!! TCAATGAAATAATCACTTAT+AGG - chr1_1:5729045-5729064 None:intergenic 20.0%
!!! TTCTTTAGAAAATCATTTTG+TGG + chr1_1:5729116-5729135 Msa0003220:intron 20.0%
!!! TTTTATAATCTGTAACTAAC+GGG + chr1_1:5729229-5729248 Msa0003220:intron 20.0%
!!! TGTTGATGTTAATATGATTT+TGG + chr1_1:5729267-5729286 Msa0003220:intron 20.0%
!! TAAACTACAACTATAACAAT+TGG - chr1_1:5729807-5729826 None:intergenic 20.0%
!! TAACAACAAAACCATTATTT+AGG - chr1_1:5730205-5730224 None:intergenic 20.0%
!!! ATAATGGTTTTGTTGTTATT+AGG + chr1_1:5730207-5730226 Msa0003220:intron 20.0%
!! TATTATTTATACTCGAATGA+AGG + chr1_1:5730998-5731017 Msa0003220:intron 20.0%
!! AGAATTTAAATTAGTACATG+TGG - chr1_1:5731319-5731338 None:intergenic 20.0%
!!! ACTAAAAAAGCATACTATTT+TGG + chr1_1:5731781-5731800 Msa0003220:CDS 20.0%
!!! CTAAAAAAGCATACTATTTT+GGG + chr1_1:5731782-5731801 Msa0003220:CDS 20.0%
!!! GATTTTTTTAATTGGTAAAC+CGG - chr1_1:5732681-5732700 None:intergenic 20.0%
!!! AATTTCTAGTAATGTAATAC+TGG - chr1_1:5732757-5732776 None:intergenic 20.0%
!! AGTATTACATTACTAGAAAT+TGG + chr1_1:5732756-5732775 Msa0003220:intron 20.0%
!! TTTACAATATCAATTCAATC+TGG + chr1_1:5732868-5732887 Msa0003220:intron 20.0%
!!! CCTTATTAAGATAATCTTTT+GGG + chr1_1:5733899-5733918 Msa0003220:intron 20.0%
!! TGCATTTATGTACTAATAAA+GGG - chr1_1:5734587-5734606 None:intergenic 20.0%
!! TTGCATTTATGTACTAATAA+AGG - chr1_1:5734588-5734607 None:intergenic 20.0%
!! TGATTATGAATGTATTTAAC+AGG + chr1_1:5734637-5734656 Msa0003220:intron 20.0%
!!! CAAAAGGATTTTAATAAAGA+AGG - chr1_1:5735155-5735174 None:intergenic 20.0%
!!! AGTGAATTTTCAATTAATTC+GGG - chr1_1:5735357-5735376 None:intergenic 20.0%
!!! CAGTGAATTTTCAATTAATT+CGG - chr1_1:5735358-5735377 None:intergenic 20.0%
!!! TTACATATTTCCTATTTTGT+AGG + chr1_1:5736040-5736059 Msa0003220:intron 20.0%
!! AACAACATACAAAATACAAT+AGG - chr1_1:5736461-5736480 None:intergenic 20.0%
!! TACCTATTTAGAAAATATCA+TGG + chr1_1:5736692-5736711 Msa0003220:intron 20.0%
!!! TACCATGATATTTTCTAAAT+AGG - chr1_1:5736697-5736716 None:intergenic 20.0%
!! AAAAATCCTTGACATATAAA+TGG - chr1_1:5737632-5737651 None:intergenic 20.0%
!!! TTGTACTAAAAAAGTATATC+CGG - chr1_1:5737841-5737860 None:intergenic 20.0%
!! AATACAATGAACAATACATA+TGG + chr1_1:5737868-5737887 Msa0003220:three_prime_UTR 20.0%
!!! TATTAACTCATTATTTTGCA+TGG - chr1_1:5737922-5737941 None:intergenic 20.0%
! AATTCGAAGTTCAAATTATG+CGG - chr1_1:5728065-5728084 None:intergenic 25.0%
! GAATTTGAACAAAATGATGA+TGG + chr1_1:5728080-5728099 Msa0003220:exon 25.0%
!!! TCTGCTTATTTTGAAGAAAA+AGG + chr1_1:5728192-5728211 Msa0003220:CDS 25.0%
!!! TTACAATGAGAAGTGTTTTT+AGG + chr1_1:5728476-5728495 Msa0003220:intron 25.0%
!!! TACAATGAGAAGTGTTTTTA+GGG + chr1_1:5728477-5728496 Msa0003220:intron 25.0%
!!! TTTTTAGGGTTTGTTTGTTA+CGG + chr1_1:5728491-5728510 Msa0003220:intron 25.0%
! GGATTGTAAAATAAGTGATT+TGG + chr1_1:5728512-5728531 Msa0003220:intron 25.0%
!!! TTTTGAAGTGATTTTCATTC+TGG - chr1_1:5728619-5728638 None:intergenic 25.0%
! AAGATACTAAGTGTTATGTT+AGG + chr1_1:5728664-5728683 Msa0003220:intron 25.0%
!!! AATTTTGACCCATTTAAAAG+TGG - chr1_1:5728692-5728711 None:intergenic 25.0%
!!! TGGTGACAATAATTGATTTT+GGG - chr1_1:5728928-5728947 None:intergenic 25.0%
! ACGATTTATAAGATAAGCTT+CGG + chr1_1:5729302-5729321 Msa0003220:CDS 25.0%
! TTAGAAACATCAACATACAA+AGG - chr1_1:5729428-5729447 None:intergenic 25.0%
! TAAGCATGTATCTTAGAATT+CGG - chr1_1:5729757-5729776 None:intergenic 25.0%
!!! TTCTAAGATACATGCTTAAA+AGG + chr1_1:5729759-5729778 Msa0003220:intron 25.0%
!! TCTAAGATACATGCTTAAAA+GGG + chr1_1:5729760-5729779 Msa0003220:intron 25.0%
! AACTGAAAAAGACTTCTTAT+AGG - chr1_1:5729873-5729892 None:intergenic 25.0%
! ATAAGCTTAAGCTTCTATTT+AGG + chr1_1:5729908-5729927 Msa0003220:intron 25.0%
! AGTAAACTGAAAATGACAAA+AGG - chr1_1:5729935-5729954 None:intergenic 25.0%
! TGTTACTGAATAAATGTGTT+AGG + chr1_1:5730024-5730043 Msa0003220:intron 25.0%
! GTTACTGAATAAATGTGTTA+GGG + chr1_1:5730025-5730044 Msa0003220:intron 25.0%
!!! TAAGTTATTTTATGATGTGG+TGG + chr1_1:5730141-5730160 Msa0003220:intron 25.0%
!! GGAGGTTATTTCATTATTAA+TGG + chr1_1:5730319-5730338 Msa0003220:CDS 25.0%
! TTCCTATCATTATTGTGTTT+CGG + chr1_1:5730695-5730714 Msa0003220:CDS 25.0%
! ATTTGTGATACAAAATCAAC+AGG + chr1_1:5730819-5730838 Msa0003220:CDS 25.0%
!!! TTTTTTGCTTACAGTCAAAA+TGG + chr1_1:5730864-5730883 Msa0003220:intron 25.0%
!! TGAACAGTCTGAAATATATT+TGG - chr1_1:5730945-5730964 None:intergenic 25.0%
!! AGAGAGCTTTTAAACTTATT+AGG + chr1_1:5731183-5731202 Msa0003220:intron 25.0%
!! GAGAGCTTTTAAACTTATTA+GGG + chr1_1:5731184-5731203 Msa0003220:intron 25.0%
! CAAAATCATATGACACAATA+TGG - chr1_1:5731397-5731416 None:intergenic 25.0%
! TTGAATCATCTAAGCTTATA+TGG - chr1_1:5731437-5731456 None:intergenic 25.0%
! AAAATCAAAACCGTTCTTTA+GGG + chr1_1:5731455-5731474 Msa0003220:intron 25.0%
!! TGAAGTATCAAGAAAATTGT+GGG - chr1_1:5731499-5731518 None:intergenic 25.0%
!! TTGAAGTATCAAGAAAATTG+TGG - chr1_1:5731500-5731519 None:intergenic 25.0%
! TTATTTATCAATTTCACTCC+AGG + chr1_1:5731544-5731563 Msa0003220:intron 25.0%
! CTTGATTATATTGGAAAAAG+AGG + chr1_1:5731572-5731591 Msa0003220:CDS 25.0%
! ATACTTGAAATTCAAGTAAC+AGG - chr1_1:5731828-5731847 None:intergenic 25.0%
!!! ACTTATTTGGTCTTGTTATT+TGG + chr1_1:5732026-5732045 Msa0003220:intron 25.0%
!! TCTTTCTATTTCTTAATTCC+TGG + chr1_1:5732051-5732070 Msa0003220:intron 25.0%
! ATTATGAATAAATTGGCACT+AGG + chr1_1:5732610-5732629 Msa0003220:intron 25.0%
! TTATGAATAAATTGGCACTA+GGG + chr1_1:5732611-5732630 Msa0003220:intron 25.0%
!!! CAAAACCATTTTTTACAAAC+CGG + chr1_1:5732659-5732678 Msa0003220:intron 25.0%
! ACTAGAAATTGGTTATAACT+AGG + chr1_1:5732767-5732786 Msa0003220:intron 25.0%
! CTAGAAATTGGTTATAACTA+GGG + chr1_1:5732768-5732787 Msa0003220:intron 25.0%
! TAGAAATTGGTTATAACTAG+GGG + chr1_1:5732769-5732788 Msa0003220:intron 25.0%
! TTGATACAATCAATGGAATA+TGG + chr1_1:5732941-5732960 Msa0003220:intron 25.0%
!!! TGTCTAAGTTGTATTTTTGT+TGG + chr1_1:5733011-5733030 Msa0003220:intron 25.0%
!! TTTTACTATTTCAGGAAAGT+TGG + chr1_1:5733039-5733058 Msa0003220:intron 25.0%
!! AATTTGTTTCTTTCTGTGTA+TGG + chr1_1:5733365-5733384 Msa0003220:intron 25.0%
!! TACGAAAATTTTTGTAGCTT+GGG - chr1_1:5733447-5733466 None:intergenic 25.0%
!! TTACGAAAATTTTTGTAGCT+TGG - chr1_1:5733448-5733467 None:intergenic 25.0%
!! GCTACAAAAATTTTCGTAAA+TGG + chr1_1:5733449-5733468 Msa0003220:CDS 25.0%
!! ATGTCGTTCTTTTATAAGAA+GGG - chr1_1:5733692-5733711 None:intergenic 25.0%
! TTCTTATAAAAGAACGACAT+GGG + chr1_1:5733692-5733711 Msa0003220:intron 25.0%
!!! GCCTTATTAAGATAATCTTT+TGG + chr1_1:5733898-5733917 Msa0003220:intron 25.0%
! CCCAAAAGATTATCTTAATA+AGG - chr1_1:5733902-5733921 None:intergenic 25.0%
!! TGATAATTCTTCTACCTTTT+TGG - chr1_1:5733998-5734017 None:intergenic 25.0%
!! GCTTTTATAAAAATGAGTCT+AGG - chr1_1:5734073-5734092 None:intergenic 25.0%
! TTGATGTTAATACTGAAGTT+GGG + chr1_1:5734204-5734223 Msa0003220:CDS 25.0%
! TGTTTATCCACAATGAATAA+AGG - chr1_1:5734293-5734312 None:intergenic 25.0%
! TATTCATTGTGGATAAACAA+AGG + chr1_1:5734294-5734313 Msa0003220:CDS 25.0%
! CAGTACTATAATTCTAGATT+TGG + chr1_1:5734550-5734569 Msa0003220:intron 25.0%
!! ATCAGGTAAATATGGTATTT+TGG + chr1_1:5734780-5734799 Msa0003220:intron 25.0%
!! TCAGGTAAATATGGTATTTT+GGG + chr1_1:5734781-5734800 Msa0003220:intron 25.0%
! ATAATATAAAACATACGCCA+AGG - chr1_1:5735052-5735071 None:intergenic 25.0%
! ATAACCAGAATAACATGAAA+TGG - chr1_1:5735242-5735261 None:intergenic 25.0%
!! GTGAATTTTCAATTAATTCG+GGG - chr1_1:5735356-5735375 None:intergenic 25.0%
! AGAGATGAAGAGAAAAAAAT+GGG + chr1_1:5735431-5735450 Msa0003220:intron 25.0%
!!! TATAAAAAGTGTTGTTTTGC+AGG + chr1_1:5735553-5735572 Msa0003220:intron 25.0%
!!! ATAAAAAGTGTTGTTTTGCA+GGG + chr1_1:5735554-5735573 Msa0003220:intron 25.0%
! TATGATAAATTGGATGATGA+TGG + chr1_1:5735593-5735612 Msa0003220:CDS 25.0%
! CAATTTATCACTATGAAACA+GGG + chr1_1:5735696-5735715 Msa0003220:intron 25.0%
!! GTTTTGCATTTAAAAAACGT+CGG + chr1_1:5736547-5736566 Msa0003220:intron 25.0%
! ATAGCACATTGTTAAACTTT+GGG - chr1_1:5736573-5736592 None:intergenic 25.0%
! AATAGCACATTGTTAAACTT+TGG - chr1_1:5736574-5736593 None:intergenic 25.0%
!! ATGGTAGAATTTTTGCTTTA+TGG + chr1_1:5736711-5736730 Msa0003220:intron 25.0%
!! ATTTTAAACACAAGCTAGAA+AGG - chr1_1:5736743-5736762 None:intergenic 25.0%
! ATAAAAGACCAAAAGAAGAA+AGG + chr1_1:5737412-5737431 Msa0003220:CDS 25.0%
!! GTTTATTTCTTGAACTAGAA+AGG - chr1_1:5737655-5737674 None:intergenic 25.0%
! ATATTGATCGAAAAATTAGC+TGG + chr1_1:5737756-5737775 Msa0003220:three_prime_UTR 25.0%
! TATTGATCGAAAAATTAGCT+GGG + chr1_1:5737757-5737776 Msa0003220:three_prime_UTR 25.0%
!!! TAATAGTTTTTTTGGTCGAA+TGG + chr1_1:5737937-5737956 Msa0003220:three_prime_UTR 25.0%
!! AGTGATTTGATTTTCGAAAG+AGG - chr1_1:5727965-5727984 None:intergenic 30.0%
!! GAACAAAATGATGATGGATT+TGG + chr1_1:5728086-5728105 Msa0003220:exon 30.0%
!! TGTTAGGTTCCACTTTTAAA+TGG + chr1_1:5728680-5728699 Msa0003220:intron 30.0%
!! GTTAGGTTCCACTTTTAAAT+GGG + chr1_1:5728681-5728700 Msa0003220:intron 30.0%
! AAATGGGTCAAAATTGATTC+TGG + chr1_1:5728697-5728716 Msa0003220:intron 30.0%
AATTCACTCTACTTGAAGTT+AGG + chr1_1:5728763-5728782 Msa0003220:intron 30.0%
! GTGAGTTGAACTATCAATTT+GGG - chr1_1:5728824-5728843 None:intergenic 30.0%
! AGTGAGTTGAACTATCAATT+TGG - chr1_1:5728825-5728844 None:intergenic 30.0%
! AAGGTAAAGTGATTTGTGTT+TGG - chr1_1:5728863-5728882 None:intergenic 30.0%
!! GTGGTGACAATAATTGATTT+TGG - chr1_1:5728929-5728948 None:intergenic 30.0%
TTAGTGTATGTTTGGTTATG+TGG - chr1_1:5728948-5728967 None:intergenic 30.0%
!!! AGCAGTTTTTAGTGTATGTT+TGG - chr1_1:5728956-5728975 None:intergenic 30.0%
TACACTAAAAACTGCTTCAA+AGG + chr1_1:5728960-5728979 Msa0003220:intron 30.0%
TTAACATCAACATCACATTC+AGG - chr1_1:5729259-5729278 None:intergenic 30.0%
! TGTATGTTGATGTTTCTAAG+AGG + chr1_1:5729429-5729448 Msa0003220:CDS 30.0%
! GTATGTTGATGTTTCTAAGA+GGG + chr1_1:5729430-5729449 Msa0003220:CDS 30.0%
! GATTTCACCAAAGTTTTCAT+TGG + chr1_1:5729497-5729516 Msa0003220:CDS 30.0%
AATACTAGAATTGAGAGGAA+GGG - chr1_1:5729531-5729550 None:intergenic 30.0%
TGTAGAATACTAGAATTGAG+AGG - chr1_1:5729536-5729555 None:intergenic 30.0%
TACAGATTCTGATTTCATTG+CGG + chr1_1:5729552-5729571 Msa0003220:intron 30.0%
! TACATGCTTAAAAGGGTTTT+TGG + chr1_1:5729767-5729786 Msa0003220:intron 30.0%
TAGAAGCTTAAGCTTATCAT+TGG - chr1_1:5729905-5729924 None:intergenic 30.0%
AACACCACAAACAACAAAAA+AGG - chr1_1:5729980-5729999 None:intergenic 30.0%
! ATGTTATTCTGACTTGAAGA+AGG - chr1_1:5730051-5730070 None:intergenic 30.0%
! ATGTGGTGGTGAATTATAAT+TGG + chr1_1:5730155-5730174 Msa0003220:intron 30.0%
GTGGTGAATTATAATTGGAT+CGG + chr1_1:5730160-5730179 Msa0003220:intron 30.0%
! AACCATTATTTAGGTTACTC+AGG - chr1_1:5730196-5730215 None:intergenic 30.0%
ATTAGGTTCCTATTATGCTT+CGG + chr1_1:5730224-5730243 Msa0003220:intron 30.0%
ACTATATCAGAATTCAGAGA+AGG + chr1_1:5730261-5730280 Msa0003220:CDS 30.0%
AAATAACCTCCTTGATCATA+CGG - chr1_1:5730310-5730329 None:intergenic 30.0%
CTTAAAGACATAGACATGAT+TGG - chr1_1:5730383-5730402 None:intergenic 30.0%
! ATGTCTATGTCTTTAAGAAG+AGG + chr1_1:5730386-5730405 Msa0003220:CDS 30.0%
! TATGCATTTTTATTCCTACC+AGG + chr1_1:5730621-5730640 Msa0003220:intron 30.0%
! ATGCATTTTTATTCCTACCA+GGG + chr1_1:5730622-5730641 Msa0003220:intron 30.0%
TCCTATCATTATTGTGTTTC+GGG + chr1_1:5730696-5730715 Msa0003220:CDS 30.0%
AGTCATAGCATATATGTTCA+AGG - chr1_1:5730750-5730769 None:intergenic 30.0%
ACATATATGCTATGACTTTG+CGG + chr1_1:5730753-5730772 Msa0003220:CDS 30.0%
AACAGCTCTTATAAGGTTAT+AGG + chr1_1:5731090-5731109 Msa0003220:intron 30.0%
! CTTTTGCACAAGTACTTATA+GGG - chr1_1:5731262-5731281 None:intergenic 30.0%
! TCTTTTGCACAAGTACTTAT+AGG - chr1_1:5731263-5731282 None:intergenic 30.0%
CAAAATCAAAACCGTTCTTT+AGG + chr1_1:5731454-5731473 Msa0003220:intron 30.0%
TGCAATATTTCCCTAAAGAA+CGG - chr1_1:5731468-5731487 None:intergenic 30.0%
ACTTCAATGTCTTCTGTATA+TGG + chr1_1:5731513-5731532 Msa0003220:intron 30.0%
! TCACTTAATTCTCTTTTCCT+TGG - chr1_1:5731615-5731634 None:intergenic 30.0%
TGTAACAGTTGCTTCATAAT+GGG - chr1_1:5731678-5731697 None:intergenic 30.0%
ATAGCTGCATCACAAATTAT+AGG - chr1_1:5732079-5732098 None:intergenic 30.0%
! TCTGTCTTCTAAAGATGAAA+TGG + chr1_1:5732397-5732416 Msa0003220:intron 30.0%
TATGAATAAATTGGCACTAG+GGG + chr1_1:5732612-5732631 Msa0003220:intron 30.0%
! CGGTTTGTAAAAAATGGTTT+TGG - chr1_1:5732661-5732680 None:intergenic 30.0%
!! GTAAACCGGTTTGTAAAAAA+TGG - chr1_1:5732667-5732686 None:intergenic 30.0%
!!! TTTTTTGAGCAATTTGGTTG+TGG - chr1_1:5732728-5732747 None:intergenic 30.0%
! AATTCAATCTGGTTCAAAAC+CGG + chr1_1:5732879-5732898 Msa0003220:intron 30.0%
! TCCATTGATTGTATCAACTA+CGG - chr1_1:5732938-5732957 None:intergenic 30.0%
GGAATATGGTAATATGTTCT+CGG + chr1_1:5732955-5732974 Msa0003220:intron 30.0%
!! ATGTTCTCGGTTATTTCTTT+AGG + chr1_1:5732968-5732987 Msa0003220:intron 30.0%
! TGGTTCTCTTTTACTATTTC+AGG + chr1_1:5733031-5733050 Msa0003220:intron 30.0%
ATAATGAACTCATCTTTCTC+TGG + chr1_1:5733174-5733193 Msa0003220:intron 30.0%
TCATCTTTCTCTGGTATTTA+TGG + chr1_1:5733183-5733202 Msa0003220:intron 30.0%
TGGTATTTATGGACGTTATT+GGG + chr1_1:5733194-5733213 Msa0003220:intron 30.0%
ACGTTATTGGGCTATTATTT+AGG + chr1_1:5733206-5733225 Msa0003220:intron 30.0%
! TTGATGGTATACATTACAGT+TGG + chr1_1:5733255-5733274 Msa0003220:CDS 30.0%
! TCTTCTAAAAACTCCAGAAT+AGG - chr1_1:5733294-5733313 None:intergenic 30.0%
!!! TTCTGGAGTTTTTAGAAGAA+TGG + chr1_1:5733295-5733314 Msa0003220:CDS 30.0%
!! TCTGGAGTTTTTAGAAGAAT+GGG + chr1_1:5733296-5733315 Msa0003220:CDS 30.0%
! TCCTACATAGTGGAAAAAAA+AGG - chr1_1:5733404-5733423 None:intergenic 30.0%
! ACGAAAATTTTTGTAGCTTG+GGG - chr1_1:5733446-5733465 None:intergenic 30.0%
! AAATTTTCGTAAATGGTTGC+TGG + chr1_1:5733456-5733475 Msa0003220:CDS 30.0%
! TGATTTTGTCTTGAGTCTTT+TGG + chr1_1:5733561-5733580 Msa0003220:intron 30.0%
! AGTTTCAAAGACAGCTTTTT+AGG - chr1_1:5733590-5733609 None:intergenic 30.0%
AGTGTAGTAGATACAATCAT+TGG + chr1_1:5733638-5733657 Msa0003220:intron 30.0%
! CATGTCGTTCTTTTATAAGA+AGG - chr1_1:5733693-5733712 None:intergenic 30.0%
CTTCTTATAAAAGAACGACA+TGG + chr1_1:5733691-5733710 Msa0003220:intron 30.0%
AAATACTATTGTGTGCCTTA+AGG + chr1_1:5733725-5733744 Msa0003220:intron 30.0%
GTAGTCTATATTTCTTAGCA+AGG + chr1_1:5733876-5733895 Msa0003220:intron 30.0%
!! AATCTTTTGGGTGAGATATT+TGG + chr1_1:5733911-5733930 Msa0003220:intron 30.0%
ATTTGGAGAGAATTCTTGTA+TGG + chr1_1:5733928-5733947 Msa0003220:intron 30.0%
! ACGAGATCTTTTAACCAAAA+AGG + chr1_1:5733981-5734000 Msa0003220:intron 30.0%
! TAATCATAGTTTAGTGCTGA+TGG + chr1_1:5734164-5734183 Msa0003220:intron 30.0%
GTTGATGTTAATACTGAAGT+TGG + chr1_1:5734203-5734222 Msa0003220:CDS 30.0%
TGATGTTAATACTGAAGTTG+GGG + chr1_1:5734205-5734224 Msa0003220:CDS 30.0%
!! ACTTGTTTTTCCATTTCTTC+AGG + chr1_1:5734421-5734440 Msa0003220:intron 30.0%
GATATATTCTATAAAGCCCT+TGG - chr1_1:5734483-5734502 None:intergenic 30.0%
!! AGTACTGACATTAATTGTCA+TGG - chr1_1:5734537-5734556 None:intergenic 30.0%
ATACCATATTTACCTGATTG+TGG - chr1_1:5734778-5734797 None:intergenic 30.0%
AATCTCTATCTTCTTACCTT+TGG + chr1_1:5734839-5734858 Msa0003220:intron 30.0%
CAAAATTTACAATTCCAGCA+GGG - chr1_1:5735131-5735150 None:intergenic 30.0%
TCAAAATTTACAATTCCAGC+AGG - chr1_1:5735132-5735151 None:intergenic 30.0%
!! CTCTATTTTTCCGTTCATAT+AGG + chr1_1:5735320-5735339 Msa0003220:CDS 30.0%
CAGAGATGAAGAGAAAAAAA+TGG + chr1_1:5735430-5735449 Msa0003220:intron 30.0%
! ACTCTTGTCAAAGAAGATTT+TGG + chr1_1:5735455-5735474 Msa0003220:CDS 30.0%
!! TTGTCAAAGAAGATTTTGGT+CGG + chr1_1:5735459-5735478 Msa0003220:CDS 30.0%
ATAGCAAATCAACAACATGT+AGG - chr1_1:5735524-5735543 None:intergenic 30.0%
!! CATGTTGTTGATTTGCTATT+TGG + chr1_1:5735525-5735544 Msa0003220:intron 30.0%
GCATGGTTCTTATGATAAAT+TGG + chr1_1:5735583-5735602 Msa0003220:CDS 30.0%
TCAAAATATATGCTTACAGG+TGG - chr1_1:5735626-5735645 None:intergenic 30.0%
CTGTCAAAATATATGCTTAC+AGG - chr1_1:5735629-5735648 None:intergenic 30.0%
AACTTTCAGACATGTTATTC+AGG - chr1_1:5735655-5735674 None:intergenic 30.0%
GCAATTTATCACTATGAAAC+AGG + chr1_1:5735695-5735714 Msa0003220:intron 30.0%
ATACCAAAATCCTGAATTTC+TGG + chr1_1:5735993-5736012 Msa0003220:intron 30.0%
TGGATTGACAATAATATCAG+GGG - chr1_1:5736231-5736250 None:intergenic 30.0%
! GTGGATTGACAATAATATCA+GGG - chr1_1:5736232-5736251 None:intergenic 30.0%
! TGTGGATTGACAATAATATC+AGG - chr1_1:5736233-5736252 None:intergenic 30.0%
CTTACAGTAACATCTGTAAA+AGG - chr1_1:5736347-5736366 None:intergenic 30.0%
CATACAAAATACAATAGGCA+CGG - chr1_1:5736456-5736475 None:intergenic 30.0%
! TTTTACCCTTCCACTTAAAT+AGG + chr1_1:5736479-5736498 Msa0003220:intron 30.0%
TTTACCCTTCCACTTAAATA+GGG + chr1_1:5736480-5736499 Msa0003220:intron 30.0%
AAAACAATTTCCTTGTGTAC+TGG - chr1_1:5736532-5736551 None:intergenic 30.0%
! ATTGTTTTCTACTGTAATCC+AGG + chr1_1:5736767-5736786 Msa0003220:intron 30.0%
!! AGAAGAATTCTTTTGAGTGT+AGG + chr1_1:5737159-5737178 Msa0003220:CDS 30.0%
!! GAAGAATTCTTTTGAGTGTA+GGG + chr1_1:5737160-5737179 Msa0003220:CDS 30.0%
!! AAGAATTCTTTTGAGTGTAG+GGG + chr1_1:5737161-5737180 Msa0003220:CDS 30.0%
! AGATTCTTAGTTTCTCGTTT+TGG + chr1_1:5737280-5737299 Msa0003220:intron 30.0%
! GAAATGACATTCCTTTTGTT+GGG + chr1_1:5737596-5737615 Msa0003220:three_prime_UTR 30.0%
GACATTCCATTTATATGTCA+AGG + chr1_1:5737623-5737642 Msa0003220:three_prime_UTR 30.0%
!!! AATCACTTTTTCTCTCTGCT+AGG + chr1_1:5727978-5727997 Msa0003220:five_prime_UTR 35.0%
!!! ATCACTTTTTCTCTCTGCTA+GGG + chr1_1:5727979-5727998 Msa0003220:five_prime_UTR 35.0%
!! ACCTTCAACTCACTTTTAGT+TGG + chr1_1:5728878-5728897 Msa0003220:intron 35.0%
! TCCAACTAAAAGTGAGTTGA+AGG - chr1_1:5728882-5728901 None:intergenic 35.0%
TTTGAGTAAGCCAATGATGA+CGG + chr1_1:5729334-5729353 Msa0003220:CDS 35.0%
TCTAAGAGGGTCATTAAGAA+AGG + chr1_1:5729443-5729462 Msa0003220:CDS 35.0%
CTAAGAGGGTCATTAAGAAA+GGG + chr1_1:5729444-5729463 Msa0003220:CDS 35.0%
TACCTTGCCAATGAAAACTT+TGG - chr1_1:5729507-5729526 None:intergenic 35.0%
ATACTAGAATTGAGAGGAAG+GGG - chr1_1:5729530-5729549 None:intergenic 35.0%
GAATACTAGAATTGAGAGGA+AGG - chr1_1:5729532-5729551 None:intergenic 35.0%
AAACTTCCTAAACACTACAC+AGG - chr1_1:5729683-5729702 None:intergenic 35.0%
TGTGTAGTGTTTAGGAAGTT+TGG + chr1_1:5729682-5729701 Msa0003220:intron 35.0%
GTGTAGTGTTTAGGAAGTTT+GGG + chr1_1:5729683-5729702 Msa0003220:intron 35.0%
!!! TGGTTTTGTAAGGTTGAGTT+AGG + chr1_1:5729725-5729744 Msa0003220:intron 35.0%
!!! TAGGCCTTTTTTGTTGTTTG+TGG + chr1_1:5729973-5729992 Msa0003220:intron 35.0%
TAACTAGACCGAAGCATAAT+AGG - chr1_1:5730235-5730254 None:intergenic 35.0%
CATTATTAATGGCAGTGAGA+AGG + chr1_1:5730330-5730349 Msa0003220:CDS 35.0%
ACCTAACAAGTATGCTTATG+TGG + chr1_1:5730411-5730430 Msa0003220:CDS 35.0%
CCTAACAAGTATGCTTATGT+GGG + chr1_1:5730412-5730431 Msa0003220:CDS 35.0%
!! TTTGTGTAGTTTTTGCTGTG+TGG + chr1_1:5730550-5730569 Msa0003220:intron 35.0%
GGAATTTCAGTTCGAATGTA+AGG - chr1_1:5730679-5730698 None:intergenic 35.0%
ATTATTGTGTTTCGGGCATT+GGG + chr1_1:5730703-5730722 Msa0003220:CDS 35.0%
ATGTTCAAGGATATCCTTGT+CGG - chr1_1:5730737-5730756 None:intergenic 35.0%
TATCACAAATGCTTCTTCCA+GGG - chr1_1:5730809-5730828 None:intergenic 35.0%
GTGATACAAAATCAACAGGT+TGG + chr1_1:5730823-5730842 Msa0003220:intron 35.0%
ATTTCAGACTGTTCAGAAGA+TGG + chr1_1:5730950-5730969 Msa0003220:intron 35.0%
GCTAGAAACTAATCCAAACT+GGG - chr1_1:5731024-5731043 None:intergenic 35.0%
AGCTAGAAACTAATCCAAAC+TGG - chr1_1:5731025-5731044 None:intergenic 35.0%
! CCTTATAAGAGCTGTTTCAT+GGG - chr1_1:5731086-5731105 None:intergenic 35.0%
! ACCTTATAAGAGCTGTTTCA+TGG - chr1_1:5731087-5731106 None:intergenic 35.0%
ATAGGCGTTTGTGAAGTTAA+AGG + chr1_1:5731108-5731127 Msa0003220:intron 35.0%
! CGTTTGTGTAGAAGCTTTAT+AGG + chr1_1:5731138-5731157 Msa0003220:intron 35.0%
TGTTGCAATAACCATCTGTA+TGG - chr1_1:5731223-5731242 None:intergenic 35.0%
TAGGGAAATATTGCACTCTT+TGG + chr1_1:5731473-5731492 Msa0003220:intron 35.0%
CAATATAATCAAGTGCAACC+TGG - chr1_1:5731565-5731584 None:intergenic 35.0%
CAGGTTGCACTTGATTATAT+TGG + chr1_1:5731563-5731582 Msa0003220:intron 35.0%
GTGTAACAGTTGCTTCATAA+TGG - chr1_1:5731679-5731698 None:intergenic 35.0%
TCCACAGATATATCATTCAC+CGG + chr1_1:5731868-5731887 Msa0003220:intron 35.0%
GAAGATGATAGGGATCATTA+TGG + chr1_1:5731921-5731940 Msa0003220:CDS 35.0%
GGGATCATTATGGAAATAAG+AGG + chr1_1:5731931-5731950 Msa0003220:CDS 35.0%
TCATTATGGAAATAAGAGGC+TGG + chr1_1:5731935-5731954 Msa0003220:CDS 35.0%
CATCACAAATTATAGGAACC+AGG - chr1_1:5732072-5732091 None:intergenic 35.0%
AAAGTTGACTAGAGATGTCA+GGG + chr1_1:5732103-5732122 Msa0003220:CDS 35.0%
TTCAAGAGGTAGAAGGTTAT+AGG - chr1_1:5732192-5732211 None:intergenic 35.0%
ATAACCTTCTACCTCTTGAA+TGG + chr1_1:5732192-5732211 Msa0003220:intron 35.0%
! TTGCTTTGATAGCAAATTGC+AGG - chr1_1:5732249-5732268 None:intergenic 35.0%
AAAGCAAAAACCATCACAAG+TGG + chr1_1:5732262-5732281 Msa0003220:CDS 35.0%
CGAAGATTGAATTCTCCTAT+AGG + chr1_1:5732499-5732518 Msa0003220:CDS 35.0%
TTATGCAACAATGCACAAAG+AGG - chr1_1:5732586-5732605 None:intergenic 35.0%
GGTTCAAAACCGGTTATATT+CGG + chr1_1:5732889-5732908 Msa0003220:intron 35.0%
AAAACCGGTTATATTCGGTT+TGG + chr1_1:5732894-5732913 Msa0003220:intron 35.0%
TGAACCAAACCGAATATAAC+CGG - chr1_1:5732901-5732920 None:intergenic 35.0%
! CCATTGATTGTATCAACTAC+GGG - chr1_1:5732937-5732956 None:intergenic 35.0%
ACAGCTGCATAATTCACAAT+GGG + chr1_1:5733072-5733091 Msa0003220:CDS 35.0%
AAAATACTCACTTGTCCTTC+TGG - chr1_1:5733121-5733140 None:intergenic 35.0%
CTGGTATTTATGGACGTTAT+TGG + chr1_1:5733193-5733212 Msa0003220:intron 35.0%
!! CTGGAGTTTTTAGAAGAATG+GGG + chr1_1:5733297-5733316 Msa0003220:CDS 35.0%
!!! GCCTTTTTTTTCCACTATGT+AGG + chr1_1:5733400-5733419 Msa0003220:intron 35.0%
AGGAGAAATTTCCTACATAG+TGG - chr1_1:5733414-5733433 None:intergenic 35.0%
TATGTAGGAAATTTCTCCTG+CGG + chr1_1:5733415-5733434 Msa0003220:intron 35.0%
ATGTCCTAACCAACATATCA+GGG - chr1_1:5733499-5733518 None:intergenic 35.0%
AATGTCCTAACCAACATATC+AGG - chr1_1:5733500-5733519 None:intergenic 35.0%
!! AAAGCTGTCTTTGAAACTGT+TGG + chr1_1:5733592-5733611 Msa0003220:intron 35.0%
TTCCTTAAGCAATGTCCTTA+AGG - chr1_1:5733743-5733762 None:intergenic 35.0%
! ATATGCGCAGTTCTTTAAGA+CGG - chr1_1:5734244-5734263 None:intergenic 35.0%
CTGCGCATATATACAGATTA+TGG + chr1_1:5734254-5734273 Msa0003220:CDS 35.0%
ACATTCATTCTTTGCAGCAA+AGG + chr1_1:5734336-5734355 Msa0003220:CDS 35.0%
CATTCATTCTTTGCAGCAAA+GGG + chr1_1:5734337-5734356 Msa0003220:CDS 35.0%
AGAATATATCGACACAGAAG+AGG + chr1_1:5734493-5734512 Msa0003220:CDS 35.0%
GTATCAGAATATGCTTCTTC+TGG - chr1_1:5734686-5734705 None:intergenic 35.0%
!!! AATCCATCCATCACTGATTT+TGG + chr1_1:5734721-5734740 Msa0003220:CDS 35.0%
!!! ATCCATCCATCACTGATTTT+GGG + chr1_1:5734722-5734741 Msa0003220:CDS 35.0%
ATATTTACCTGATTGTGGTC+AGG - chr1_1:5734773-5734792 None:intergenic 35.0%
TGACCACAATCAGGTAAATA+TGG + chr1_1:5734772-5734791 Msa0003220:intron 35.0%
!! TATGGTATTTTGGGTGTATG+AGG + chr1_1:5734790-5734809 Msa0003220:intron 35.0%
!! ATGGTATTTTGGGTGTATGA+GGG + chr1_1:5734791-5734810 Msa0003220:intron 35.0%
TAATACGTATCAGTCTGCTA+TGG + chr1_1:5734882-5734901 Msa0003220:CDS 35.0%
AATACGTATCAGTCTGCTAT+GGG + chr1_1:5734883-5734902 Msa0003220:CDS 35.0%
TGAACAATACCATTCGAAAC+TGG - chr1_1:5734942-5734961 None:intergenic 35.0%
TAATGTGCCATACTTGATTC+TGG + chr1_1:5734990-5735009 Msa0003220:intron 35.0%
! ATGCTTTTGCTTCATTGCTT+AGG + chr1_1:5735023-5735042 Msa0003220:intron 35.0%
ATATTATCCTCAAAAGCCAC+TGG + chr1_1:5735065-5735084 Msa0003220:CDS 35.0%
ATAACATGAAATGGCCACAA+TGG - chr1_1:5735233-5735252 None:intergenic 35.0%
AGCAAACAGACCTATATGAA+CGG - chr1_1:5735333-5735352 None:intergenic 35.0%
! CAAAATTTTCACCATGGTGT+TGG - chr1_1:5735495-5735514 None:intergenic 35.0%
! CAACACCATGGTGAAAATTT+TGG + chr1_1:5735493-5735512 Msa0003220:intron 35.0%
! AAGAGCCAAAATTTTCACCA+TGG - chr1_1:5735501-5735520 None:intergenic 35.0%
TCTGGTGAGGATGTTATTAT+TGG + chr1_1:5735729-5735748 Msa0003220:CDS 35.0%
CTACTATTCCAGTTTCACTA+TGG - chr1_1:5735836-5735855 None:intergenic 35.0%
! AAGCCAGAAATTCAGGATTT+TGG - chr1_1:5735999-5736018 None:intergenic 35.0%
AAGAGTAAAGCCAGAAATTC+AGG - chr1_1:5736006-5736025 None:intergenic 35.0%
GTCAACAGAACCTACAAAAT+AGG - chr1_1:5736053-5736072 None:intergenic 35.0%
GTTGAGATTCGTGAAAGTAA+GGG + chr1_1:5736088-5736107 Msa0003220:CDS 35.0%
GACAAATTCAGTAGTAGACA+CGG + chr1_1:5736140-5736159 Msa0003220:CDS 35.0%
ATACCTTCTCGAATGACAAT+TGG + chr1_1:5736257-5736276 Msa0003220:CDS 35.0%
TTGTCCCTATTTAAGTGGAA+GGG - chr1_1:5736487-5736506 None:intergenic 35.0%
AGCAAAGCTTTACACAAATG+TGG + chr1_1:5736801-5736820 Msa0003220:CDS 35.0%
GCAAAGCTTTACACAAATGT+GGG + chr1_1:5736802-5736821 Msa0003220:CDS 35.0%
!!! GGTTTTGAGACAATGTACAA+TGG + chr1_1:5736837-5736856 Msa0003220:CDS 35.0%
ACAATGTACAATGGTCATAC+AGG + chr1_1:5736846-5736865 Msa0003220:CDS 35.0%
! TCAGTGCAATGATTTTCCTT+GGG + chr1_1:5736877-5736896 Msa0003220:CDS 35.0%
! TTCAACCTTTGGTAATAGGT+AGG - chr1_1:5736903-5736922 None:intergenic 35.0%
! ATGCTTCAACCTTTGGTAAT+AGG - chr1_1:5736907-5736926 None:intergenic 35.0%
TTACCAAAGGTTGAAGCATA+TGG + chr1_1:5736908-5736927 Msa0003220:CDS 35.0%
GATCAAACAGTCTTTCCTTT+AGG - chr1_1:5737076-5737095 None:intergenic 35.0%
GAACAAAACTGACATTGTTC+AGG + chr1_1:5737190-5737209 Msa0003220:CDS 35.0%
TCCAAGAATGCTTACTAAAG+AGG + chr1_1:5737381-5737400 Msa0003220:CDS 35.0%
ACCTCTTTAGTAAGCATTCT+TGG - chr1_1:5737385-5737404 None:intergenic 35.0%
!! TTTTCTCAAACTTGCTCATC+AGG - chr1_1:5737440-5737459 None:intergenic 35.0%
AGTCAACATGGAATAAAGAC+TGG - chr1_1:5737467-5737486 None:intergenic 35.0%
! GGAAATGACATTCCTTTTGT+TGG + chr1_1:5737595-5737614 Msa0003220:three_prime_UTR 35.0%
! GAATGTCATTTCCCAACAAA+AGG - chr1_1:5737610-5737629 None:intergenic 35.0%
TACATTACCAGATGCGATAT+AGG - chr1_1:5737723-5737742 None:intergenic 35.0%
!!! TGGTGTGTCTTTGTTTTGTA+TGG + chr1_1:5737888-5737907 Msa0003220:three_prime_UTR 35.0%
!!! GTCTTTGTTTTGTATGGTGA+AGG + chr1_1:5737894-5737913 Msa0003220:three_prime_UTR 35.0%
AAACGAATTCGACCAGCAAA+TGG + chr1_1:5728116-5728135 Msa0003220:CDS 40.0%
AAATCACCCAAGAAGATGCT+TGG + chr1_1:5728160-5728179 Msa0003220:CDS 40.0%
AATCACCCAAGAAGATGCTT+GGG + chr1_1:5728161-5728180 Msa0003220:CDS 40.0%
! GTTCTGGATGAATTCATCGA+AGG - chr1_1:5728241-5728260 None:intergenic 40.0%
TTCATCAACTATCTCCTGCA+TGG - chr1_1:5728265-5728284 None:intergenic 40.0%
TCTAACTACCTCAGCGAAAT+CGG - chr1_1:5728340-5728359 None:intergenic 40.0%
! TGGGTCAAAATTGATTCTGG+AGG + chr1_1:5728700-5728719 Msa0003220:intron 40.0%
! ATAATCTGTAACTAACGGGC+TGG + chr1_1:5729233-5729252 Msa0003220:intron 40.0%
CATTGTTTCCTAAAGCTGCT+AGG + chr1_1:5729378-5729397 Msa0003220:CDS 40.0%
! GTCATTAAGAAAGGGCATGA+TGG + chr1_1:5729452-5729471 Msa0003220:CDS 40.0%
! CACCAAAGTTTTCATTGGCA+AGG + chr1_1:5729502-5729521 Msa0003220:CDS 40.0%
ACACAAATGCCACAATTAGG+AGG - chr1_1:5729589-5729608 None:intergenic 40.0%
GCAACACAAATGCCACAATT+AGG - chr1_1:5729592-5729611 None:intergenic 40.0%
! GGTGTTGGATGCTTTAATGA+AGG - chr1_1:5729614-5729633 None:intergenic 40.0%
ATCCAACACCTTCATTGTGT+TGG + chr1_1:5729624-5729643 Msa0003220:intron 40.0%
TCCAACACCTTCATTGTGTT+GGG + chr1_1:5729625-5729644 Msa0003220:intron 40.0%
AAATCCACCCAACACAATGA+AGG - chr1_1:5729635-5729654 None:intergenic 40.0%
AAATCGCCTGTGTAGTGTTT+AGG + chr1_1:5729674-5729693 Msa0003220:intron 40.0%
AAAACCAGCTTGTAAGGTGA+GGG - chr1_1:5729712-5729731 None:intergenic 40.0%
CCTTACAAAACCAGCTTGTA+AGG - chr1_1:5729718-5729737 None:intergenic 40.0%
!!! CCTTACAAGCTGGTTTTGTA+AGG + chr1_1:5729715-5729734 Msa0003220:intron 40.0%
TTCAGTGATAAGCTCACAGT+AGG + chr1_1:5729954-5729973 Msa0003220:intron 40.0%
ATAATTGGATCGGACTTCTG+AGG + chr1_1:5730170-5730189 Msa0003220:intron 40.0%
GGCCTGAGTAACCTAAATAA+TGG + chr1_1:5730191-5730210 Msa0003220:intron 40.0%
TGAGAAGGTTCTTATTGCTC+AGG + chr1_1:5730345-5730364 Msa0003220:CDS 40.0%
CCCACATAAGCATACTTGTT+AGG - chr1_1:5730415-5730434 None:intergenic 40.0%
ATGCTTATGTGGGTGAAGTT+CGG + chr1_1:5730422-5730441 Msa0003220:CDS 40.0%
! GCGATTTTCATTTACCCCTT+TGG - chr1_1:5730515-5730534 None:intergenic 40.0%
GCCCGAAACACAATAATGAT+AGG - chr1_1:5730700-5730719 None:intergenic 40.0%
CATTATTGTGTTTCGGGCAT+TGG + chr1_1:5730702-5730721 Msa0003220:CDS 40.0%
! TTATTGTGTTTCGGGCATTG+GGG + chr1_1:5730704-5730723 Msa0003220:CDS 40.0%
CTTTGCGGATACTCAAATGA+TGG + chr1_1:5730768-5730787 Msa0003220:CDS 40.0%
GTATCACAAATGCTTCTTCC+AGG - chr1_1:5730810-5730829 None:intergenic 40.0%
CCCATGAAACAGCTCTTATA+AGG + chr1_1:5731083-5731102 Msa0003220:intron 40.0%
GCTCTTTGTTACCATACAGA+TGG + chr1_1:5731209-5731228 Msa0003220:intron 40.0%
GGAAAAAGAGGATCAACTGT+AGG + chr1_1:5731584-5731603 Msa0003220:CDS 40.0%
ATCAACTGTAGGTGTAACCA+AGG + chr1_1:5731595-5731614 Msa0003220:CDS 40.0%
ACACTTGTATCCTAATCTGC+AGG + chr1_1:5731695-5731714 Msa0003220:intron 40.0%
TGCTAAGGACATCCTTCAAA+AGG + chr1_1:5731720-5731739 Msa0003220:CDS 40.0%
ATACTCTCCAACACCAACAT+GGG - chr1_1:5731755-5731774 None:intergenic 40.0%
AATACTCTCCAACACCAACA+TGG - chr1_1:5731756-5731775 None:intergenic 40.0%
GAAAGTTGACTAGAGATGTC+AGG + chr1_1:5732102-5732121 Msa0003220:CDS 40.0%
AAGTTGACTAGAGATGTCAG+GGG + chr1_1:5732104-5732123 Msa0003220:CDS 40.0%
! ATGGTGCAGTGTGTTGATAA+TGG + chr1_1:5732211-5732230 Msa0003220:intron 40.0%
!! TGGTGCAGTGTGTTGATAAT+GGG + chr1_1:5732212-5732231 Msa0003220:intron 40.0%
GTACTTAAGTCCACTTGTGA+TGG - chr1_1:5732275-5732294 None:intergenic 40.0%
! CTTAAGTACTCACTTGCTAC+TGG + chr1_1:5732286-5732305 Msa0003220:CDS 40.0%
! ACTCACTTGCTACTGGTAAT+TGG + chr1_1:5732293-5732312 Msa0003220:CDS 40.0%
! CTCACTTGCTACTGGTAATT+GGG + chr1_1:5732294-5732313 Msa0003220:CDS 40.0%
! TCACTTGCTACTGGTAATTG+GGG + chr1_1:5732295-5732314 Msa0003220:CDS 40.0%
! CATCTTTAGAAGACAGAGCA+CGG - chr1_1:5732394-5732413 None:intergenic 40.0%
! GTGTGATAAAGTGGAAGCAT+AGG - chr1_1:5732476-5732495 None:intergenic 40.0%
TCTTCGCAAGTGTGATAAAG+TGG - chr1_1:5732485-5732504 None:intergenic 40.0%
AATTCTCCTATAGGACGTGA+AGG + chr1_1:5732508-5732527 Msa0003220:CDS 40.0%
CAATTACCTTCACGTCCTAT+AGG - chr1_1:5732517-5732536 None:intergenic 40.0%
!!! AATGGTTTTGGTTCTGAACC+AGG - chr1_1:5732649-5732668 None:intergenic 40.0%
TGAGCAATTTGGTTGTGGAT+TGG - chr1_1:5732723-5732742 None:intergenic 40.0%
CATGAACCAAACCAAACTGA+TGG + chr1_1:5732803-5732822 Msa0003220:intron 40.0%
ACCAAACCAAACTGATGGTT+TGG + chr1_1:5732808-5732827 Msa0003220:intron 40.0%
ACCAAACCATCAGTTTGGTT+TGG - chr1_1:5732812-5732831 None:intergenic 40.0%
ACTGAACCAAACCATCAGTT+TGG - chr1_1:5732817-5732836 None:intergenic 40.0%
! CCCGTAGTTGATACAATCAA+TGG + chr1_1:5732934-5732953 Msa0003220:intron 40.0%
ATTATGCAGCTGTCTTGGTT+TGG - chr1_1:5733065-5733084 None:intergenic 40.0%
TGTGAATTATGCAGCTGTCT+TGG - chr1_1:5733070-5733089 None:intergenic 40.0%
GACAGCTGCATAATTCACAA+TGG + chr1_1:5733071-5733090 Msa0003220:CDS 40.0%
CAGCTGCATAATTCACAATG+GGG + chr1_1:5733073-5733092 Msa0003220:CDS 40.0%
TATTATTTAGGCCTGTGGAC+TGG + chr1_1:5733218-5733237 Msa0003220:intron 40.0%
TTCAGCAGCATATCCTATTC+TGG + chr1_1:5733278-5733297 Msa0003220:CDS 40.0%
! ATGGGGCACAGAAAATTTTG+AGG + chr1_1:5733314-5733333 Msa0003220:CDS 40.0%
TTTCGTAAATGGTTGCTGGA+TGG + chr1_1:5733460-5733479 Msa0003220:CDS 40.0%
TTCGTAAATGGTTGCTGGAT+GGG + chr1_1:5733461-5733480 Msa0003220:CDS 40.0%
TGCCTTAAGGACATTGCTTA+AGG + chr1_1:5733738-5733757 Msa0003220:intron 40.0%
CAACCACATCTGACTTTGTT+GGG - chr1_1:5734042-5734061 None:intergenic 40.0%
ACAACCACATCTGACTTTGT+TGG - chr1_1:5734043-5734062 None:intergenic 40.0%
CAGTCGTCCTTTATTCATTG+TGG + chr1_1:5734283-5734302 Msa0003220:CDS 40.0%
TCCATTTCTTCAGGAATCAC+CGG + chr1_1:5734430-5734449 Msa0003220:intron 40.0%
AACAGGATCTTGTACAAGCA+AGG + chr1_1:5734654-5734673 Msa0003220:intron 40.0%
CATACACCCAAAATCAGTGA+TGG - chr1_1:5734731-5734750 None:intergenic 40.0%
CTCTATCTTCTTACCTTTGG+TGG + chr1_1:5734842-5734861 Msa0003220:intron 40.0%
AGACTGATACGTATTACGAG+GGG - chr1_1:5734878-5734897 None:intergenic 40.0%
CAGACTGATACGTATTACGA+GGG - chr1_1:5734879-5734898 None:intergenic 40.0%
TACCAACTACCAGTTTCGAA+TGG + chr1_1:5734930-5734949 Msa0003220:CDS 40.0%
TACCATTCGAAACTGGTAGT+TGG - chr1_1:5734935-5734954 None:intergenic 40.0%
GTGGAATCCAGAATCAAGTA+TGG - chr1_1:5735000-5735019 None:intergenic 40.0%
!! AATGAAGCAAAAGCATCAGG+TGG - chr1_1:5735019-5735038 None:intergenic 40.0%
!! AGCAATGAAGCAAAAGCATC+AGG - chr1_1:5735022-5735041 None:intergenic 40.0%
CTTCATTGCTTAGGATACCT+TGG + chr1_1:5735032-5735051 Msa0003220:intron 40.0%
ACGAAAATGAAGATGCTCCA+TGG - chr1_1:5735103-5735122 None:intergenic 40.0%
GTGGCCATTTCATGTTATTC+TGG + chr1_1:5735235-5735254 Msa0003220:CDS 40.0%
AACCAATCATCAATAGACCG+TGG + chr1_1:5735286-5735305 Msa0003220:CDS 40.0%
AAAAACCACTCCTCTATCTC+AGG + chr1_1:5735752-5735771 Msa0003220:CDS 40.0%
AGTTTACGCCATAGTGAAAC+TGG + chr1_1:5735825-5735844 Msa0003220:CDS 40.0%
!!! GCTTTACTCTTTTTTGCTGC+TGG + chr1_1:5736015-5736034 Msa0003220:intron 40.0%
TGTTGACCACAAATGCTGAT+GGG + chr1_1:5736066-5736085 Msa0003220:CDS 40.0%
GGTTGAGATTCGTGAAAGTA+AGG + chr1_1:5736087-5736106 Msa0003220:CDS 40.0%
TCTGTTCGAATACCACAGAT+TGG + chr1_1:5736116-5736135 Msa0003220:CDS 40.0%
CTGAATTTGTCACCAATCTG+TGG - chr1_1:5736131-5736150 None:intergenic 40.0%
! ATTCGAGAAGGTATAGCATG+TGG - chr1_1:5736251-5736270 None:intergenic 40.0%
TGACCAATTGTCATTCGAGA+AGG - chr1_1:5736263-5736282 None:intergenic 40.0%
TCAGCTTATCGAGTGTATCA+TGG + chr1_1:5736280-5736299 Msa0003220:CDS 40.0%
CAGCTTATCGAGTGTATCAT+GGG + chr1_1:5736281-5736300 Msa0003220:CDS 40.0%
AGCTTATCGAGTGTATCATG+GGG + chr1_1:5736282-5736301 Msa0003220:CDS 40.0%
! ATCTCCTTCTTTTCCCATGT+GGG - chr1_1:5736318-5736337 None:intergenic 40.0%
GTTGTCCCTATTTAAGTGGA+AGG - chr1_1:5736488-5736507 None:intergenic 40.0%
TCCACTTAAATAGGGACAAC+TGG + chr1_1:5736488-5736507 Msa0003220:intron 40.0%
ACTGGTAGAGTGCATATTGT+TGG - chr1_1:5736514-5736533 None:intergenic 40.0%
! GTTTTCTACTGTAATCCAGG+TGG + chr1_1:5736770-5736789 Msa0003220:intron 40.0%
CTTTGCTGATATTATCCACC+TGG - chr1_1:5736788-5736807 None:intergenic 40.0%
TTGTCTCAAAACCACGCATT+TGG - chr1_1:5736830-5736849 None:intergenic 40.0%
TGTACAATGGTCATACAGGA+AGG + chr1_1:5736850-5736869 Msa0003220:CDS 40.0%
! CTCAGTGCAATGATTTTCCT+TGG + chr1_1:5736876-5736895 Msa0003220:CDS 40.0%
CAACCATATGCTTCAACCTT+TGG - chr1_1:5736914-5736933 None:intergenic 40.0%
! TCTTTCCTTTAGGAAGTGAG+CGG - chr1_1:5737066-5737085 None:intergenic 40.0%
TAAGTCCGTATTGAAGTCCA+TGG + chr1_1:5737240-5737259 Msa0003220:intron 40.0%
GAACACCATGGACTTCAATA+CGG - chr1_1:5737248-5737267 None:intergenic 40.0%
GAAACTAAGAATCTAGCACC+AGG - chr1_1:5737274-5737293 None:intergenic 40.0%
!! TGGCTTTTGATTGTCTTTGC+AGG + chr1_1:5737300-5737319 Msa0003220:intron 40.0%
AAGAGCAGCTTACAAGCATA+AGG - chr1_1:5737334-5737353 None:intergenic 40.0%
AGTAAGCATTCTTGGAGCTA+TGG - chr1_1:5737377-5737396 None:intergenic 40.0%
! ATCAGGCTCCTTTCTTCTTT+TGG - chr1_1:5737423-5737442 None:intergenic 40.0%
! ATCAGTAGCCTTTCAAGTGT+TGG + chr1_1:5737573-5737592 Msa0003220:three_prime_UTR 40.0%
! TCAGTAGCCTTTCAAGTGTT+GGG + chr1_1:5737574-5737593 Msa0003220:three_prime_UTR 40.0%
GTCATTTCCCAACACTTGAA+AGG - chr1_1:5737584-5737603 None:intergenic 40.0%
! TGGGTTAAGAGGTATGTTTC+AGG - chr1_1:5737677-5737696 None:intergenic 40.0%
!! AGACCTGAATGCGTTTTGTT+TGG + chr1_1:5737807-5737826 Msa0003220:three_prime_UTR 40.0%
!!! GACCTGAATGCGTTTTGTTT+GGG + chr1_1:5737808-5737827 Msa0003220:three_prime_UTR 40.0%
!!! GTTTTGTTTGGGTGAAGTAC+CGG + chr1_1:5737819-5737838 Msa0003220:three_prime_UTR 40.0%
ATTCGACCAGCAAATGGAAG+AGG + chr1_1:5728122-5728141 Msa0003220:CDS 45.0%
AATGGAAGAGGAAGACGATG+AGG + chr1_1:5728134-5728153 Msa0003220:CDS 45.0%
CGAAGGAATCAAGCTGTTGA+CGG - chr1_1:5728224-5728243 None:intergenic 45.0%
ATTCATCCAGAACACCATGC+AGG + chr1_1:5728248-5728267 Msa0003220:CDS 45.0%
GGGTCGAATTTCGATATCAG+CGG - chr1_1:5728289-5728308 None:intergenic 45.0%
CCAGGATTATGCTGAGATTC+GGG - chr1_1:5728309-5728328 None:intergenic 45.0%
GCCAGGATTATGCTGAGATT+CGG - chr1_1:5728310-5728329 None:intergenic 45.0%
CCATCAGATTCCGTCATCAT+TGG - chr1_1:5729347-5729366 None:intergenic 45.0%
!! CCAATGATGACGGAATCTGA+TGG + chr1_1:5729344-5729363 Msa0003220:CDS 45.0%
TTCCTAAAGCTGCTAGGCTT+AGG + chr1_1:5729384-5729403 Msa0003220:CDS 45.0%
TTCCTAAGCCTAGCAGCTTT+AGG - chr1_1:5729389-5729408 None:intergenic 45.0%
ATGCCACAATTAGGAGGCTA+GGG - chr1_1:5729583-5729602 None:intergenic 45.0%
AATGCCACAATTAGGAGGCT+AGG - chr1_1:5729584-5729603 None:intergenic 45.0%
! ACCCAACACAATGAAGGTGT+TGG - chr1_1:5729629-5729648 None:intergenic 45.0%
AACACCTTCATTGTGTTGGG+TGG + chr1_1:5729628-5729647 Msa0003220:intron 45.0%
ACTACACAGGCGATTTCTCT+AGG - chr1_1:5729670-5729689 None:intergenic 45.0%
CAAAACCAGCTTGTAAGGTG+AGG - chr1_1:5729713-5729732 None:intergenic 45.0%
! TCTGTTTTGTGACTCTGCCA+TGG - chr1_1:5730449-5730468 None:intergenic 45.0%
ATGCGCACAAACATAGTGCT+AGG - chr1_1:5730475-5730494 None:intergenic 45.0%
TATTCCTACCAGGGTTCTTC+AGG + chr1_1:5730631-5730650 Msa0003220:intron 45.0%
ATTCCTACCAGGGTTCTTCA+GGG + chr1_1:5730632-5730651 Msa0003220:intron 45.0%
TATATTGCCCTGAAGAACCC+TGG - chr1_1:5730642-5730661 None:intergenic 45.0%
ACAAATGCTTCTTCCAGGGA+AGG - chr1_1:5730805-5730824 None:intergenic 45.0%
CCTTAGCATACCTGCAGATT+AGG - chr1_1:5731708-5731727 None:intergenic 45.0%
CCTAATCTGCAGGTATGCTA+AGG + chr1_1:5731705-5731724 Msa0003220:intron 45.0%
TACTCTCCAACACCAACATG+GGG - chr1_1:5731754-5731773 None:intergenic 45.0%
GCCGGTGAATGATATATCTG+TGG - chr1_1:5731872-5731891 None:intergenic 45.0%
CTAAAGAGTCCGCCAAGTAA+AGG - chr1_1:5731972-5731991 None:intergenic 45.0%
!! ACTTGGCGGACTCTTTAGAA+TGG + chr1_1:5731974-5731993 Msa0003220:CDS 45.0%
TGTCAGGGGTTATGTGCAAA+AGG + chr1_1:5732118-5732137 Msa0003220:CDS 45.0%
TGCACCATTCAAGAGGTAGA+AGG - chr1_1:5732199-5732218 None:intergenic 45.0%
AACACACTGCACCATTCAAG+AGG - chr1_1:5732206-5732225 None:intergenic 45.0%
!! GCAGTGTGTTGATAATGGGA+AGG + chr1_1:5732216-5732235 Msa0003220:intron 45.0%
! CACTTGCTACTGGTAATTGG+GGG + chr1_1:5732296-5732315 Msa0003220:CDS 45.0%
! ACTCGTTGTGTTTCTGCTTC+AGG + chr1_1:5732435-5732454 Msa0003220:intron 45.0%
AGGACGTGAAGGTAATTGCT+TGG + chr1_1:5732519-5732538 Msa0003220:intron 45.0%
GAAAGATTGAAGTCTGGGTC+AGG - chr1_1:5732560-5732579 None:intergenic 45.0%
GGAGGGAAAGATTGAAGTCT+GGG - chr1_1:5732565-5732584 None:intergenic 45.0%
AGGAGGGAAAGATTGAAGTC+TGG - chr1_1:5732566-5732585 None:intergenic 45.0%
GCAACAATGCACAAAGAGGA+GGG - chr1_1:5732582-5732601 None:intergenic 45.0%
TGCAACAATGCACAAAGAGG+AGG - chr1_1:5732583-5732602 None:intergenic 45.0%
ATAAATTGGCACTAGGGGTG+TGG + chr1_1:5732617-5732636 Msa0003220:intron 45.0%
ACAATGGGGAATGATGTGTC+CGG + chr1_1:5733087-5733106 Msa0003220:CDS 45.0%
TGGGCTATTATTTAGGCCTG+TGG + chr1_1:5733213-5733232 Msa0003220:intron 45.0%
CATTGAGAAAGCTGAGACGT+CGG + chr1_1:5733516-5733535 Msa0003220:CDS 45.0%
ATTGAGAAAGCTGAGACGTC+GGG + chr1_1:5733517-5733536 Msa0003220:CDS 45.0%
CATCTGACTTTGTTGGGACT+TGG - chr1_1:5734036-5734055 None:intergenic 45.0%
AGTCCCAACAAAGTCAGATG+TGG + chr1_1:5734036-5734055 Msa0003220:intron 45.0%
TCCGGTGATTCCTGAAGAAA+TGG - chr1_1:5734434-5734453 None:intergenic 45.0%
ATGGCATGATCTTGTGTCCA+AGG + chr1_1:5734463-5734482 Msa0003220:CDS 45.0%
TGGCATGATCTTGTGTCCAA+GGG + chr1_1:5734464-5734483 Msa0003220:CDS 45.0%
! CACCCAAAATCAGTGATGGA+TGG - chr1_1:5734727-5734746 None:intergenic 45.0%
GTGGTCAGGAAATGGTATGA+TGG - chr1_1:5734759-5734778 None:intergenic 45.0%
ACCATTTCCTGACCACAATC+AGG + chr1_1:5734763-5734782 Msa0003220:CDS 45.0%
ACCTGATTGTGGTCAGGAAA+TGG - chr1_1:5734767-5734786 None:intergenic 45.0%
GCAGACTGATACGTATTACG+AGG - chr1_1:5734880-5734899 None:intergenic 45.0%
TCAGTCTGCTATGGGAAAAC+AGG + chr1_1:5734891-5734910 Msa0003220:CDS 45.0%
TGCTATGGGAAAACAGGCAA+TGG + chr1_1:5734897-5734916 Msa0003220:CDS 45.0%
GCTATGGGAAAACAGGCAAT+GGG + chr1_1:5734898-5734917 Msa0003220:CDS 45.0%
ATGGCATTCTATGGCACAAG+AGG - chr1_1:5735214-5735233 None:intergenic 45.0%
TGTGCCATAGAATGCCATTG+TGG + chr1_1:5735216-5735235 Msa0003220:intron 45.0%
ATGGCCACAATGGCATTCTA+TGG - chr1_1:5735223-5735242 None:intergenic 45.0%
! AGCCACGGTCTATTGATGAT+TGG - chr1_1:5735291-5735310 None:intergenic 45.0%
CAATAGACCGTGGCTTCTTT+CGG + chr1_1:5735296-5735315 Msa0003220:CDS 45.0%
ATAGAGACCGAAAGAAGCCA+CGG - chr1_1:5735306-5735325 None:intergenic 45.0%
!! CAAAGAAGATTTTGGTCGGC+CGG + chr1_1:5735463-5735482 Msa0003220:CDS 45.0%
TGTTGCTCTTCCTGAGATAG+AGG - chr1_1:5735765-5735784 None:intergenic 45.0%
CTATCTCAGGAAGAGCAACA+AGG + chr1_1:5735765-5735784 Msa0003220:CDS 45.0%
CTGTTGACCACAAATGCTGA+TGG + chr1_1:5736065-5736084 Msa0003220:CDS 45.0%
TCTCAACCCATCAGCATTTG+TGG - chr1_1:5736075-5736094 None:intergenic 45.0%
AGTAGTAGACACGGTCAGAA+GGG + chr1_1:5736149-5736168 Msa0003220:CDS 45.0%
ATACACAAGAAGACATGCCC+TGG + chr1_1:5736189-5736208 Msa0003220:CDS 45.0%
TATCGAGTGTATCATGGGGA+AGG + chr1_1:5736286-5736305 Msa0003220:CDS 45.0%
! CATCTCCTTCTTTTCCCATG+TGG - chr1_1:5736319-5736338 None:intergenic 45.0%
GCCAGTTGTCCCTATTTAAG+TGG - chr1_1:5736492-5736511 None:intergenic 45.0%
ATGCACTCTACCAGTACACA+AGG + chr1_1:5736519-5736538 Msa0003220:intron 45.0%
AAATGTGGGTACCAAATGCG+TGG + chr1_1:5736816-5736835 Msa0003220:CDS 45.0%
! TTTGGTAATAGGTAGGCCCA+AGG - chr1_1:5736896-5736915 None:intergenic 45.0%
TTGGGCCTACCTATTACCAA+AGG + chr1_1:5736895-5736914 Msa0003220:CDS 45.0%
GATGACAAGATCCATTCTCG+TGG + chr1_1:5736933-5736952 Msa0003220:CDS 45.0%
TGCCTTGTAAGAATCTGCAC+AGG - chr1_1:5736966-5736985 None:intergenic 45.0%
!! AGGTCTTCGATTTGGAGAGA+TGG + chr1_1:5737013-5737032 Msa0003220:CDS 45.0%
CGTGATTGCATGATTGCTCA+TGG + chr1_1:5737038-5737057 Msa0003220:CDS 45.0%
CTTCCAAGAGCTAATGGCTA+TGG + chr1_1:5737351-5737370 Msa0003220:CDS 45.0%
CACCCAAACAAAACGCATTC+AGG - chr1_1:5737813-5737832 None:intergenic 45.0%
!! TAAATTAATTATGAATAAAT+TGG + chr1_1:5732603-5732622 Msa0003220:intron 5.0%
CGTCTTCCTCTTCCATTTGC+TGG - chr1_1:5728131-5728150 None:intergenic 50.0%
CACAGCCCAAGCATCTTCTT+GGG - chr1_1:5728169-5728188 None:intergenic 50.0%
TCACAGCCCAAGCATCTTCT+TGG - chr1_1:5728170-5728189 None:intergenic 50.0%
CTATCTCCTGCATGGTGTTC+TGG - chr1_1:5728257-5728276 None:intergenic 50.0%
CCCGAATCTCAGCATAATCC+TGG + chr1_1:5728306-5728325 Msa0003220:CDS 50.0%
! GAAAGGGCATGATGGTGAAG+AGG + chr1_1:5729460-5729479 Msa0003220:CDS 50.0%
TGCCACAATTAGGAGGCTAG+GGG - chr1_1:5729582-5729601 None:intergenic 50.0%
GAGAAGGATTTGACCGAGCT+TGG + chr1_1:5730277-5730296 Msa0003220:CDS 50.0%
ATACGGACACTCTCCAAGCT+CGG - chr1_1:5730293-5730312 None:intergenic 50.0%
!! GGAGAGTGTCCGTATGATCA+AGG + chr1_1:5730298-5730317 Msa0003220:CDS 50.0%
GAGTGTCCGTATGATCAAGG+AGG + chr1_1:5730301-5730320 Msa0003220:CDS 50.0%
CGCACAAACATAGTGCTAGG+TGG - chr1_1:5730472-5730491 None:intergenic 50.0%
TGTTTGTGCGCATGCTCTCT+CGG + chr1_1:5730482-5730501 Msa0003220:CDS 50.0%
ACTCGAATGAAGGCCCAGTT+TGG + chr1_1:5731008-5731027 Msa0003220:intron 50.0%
!!! GGGGAAGCATCTCCTTTTGA+AGG - chr1_1:5731735-5731754 None:intergenic 50.0%
AAGGAGATGCTTCCCCATGT+TGG + chr1_1:5731739-5731758 Msa0003220:CDS 50.0%
ATGCTTCCCCATGTTGGTGT+TGG + chr1_1:5731745-5731764 Msa0003220:CDS 50.0%
TGGAAATAAGAGGCTGGACC+TGG + chr1_1:5731941-5731960 Msa0003220:CDS 50.0%
! TACTAGAGCTGGAGTGTCAC+AGG + chr1_1:5732336-5732355 Msa0003220:CDS 50.0%
! CTAGGGGTGTGGTAAAAACC+TGG + chr1_1:5732628-5732647 Msa0003220:intron 50.0%
! GTATCAACTACGGGAGTGCA+TGG - chr1_1:5732928-5732947 None:intergenic 50.0%
! TGTCCTTCTGGTGTTTCTGC+CGG - chr1_1:5733109-5733128 None:intergenic 50.0%
CAGATTCTTCACCAGTCCAC+AGG - chr1_1:5733232-5733251 None:intergenic 50.0%
!! CTGTGGACTGGTGAAGAATC+TGG + chr1_1:5733230-5733249 Msa0003220:CDS 50.0%
TCATCGCGACCCTGATATGT+TGG + chr1_1:5733487-5733506 Msa0003220:CDS 50.0%
! GCGACCCTGATATGTTGGTT+AGG + chr1_1:5733492-5733511 Msa0003220:CDS 50.0%
CTGACTTTGTTGGGACTTGG+AGG - chr1_1:5734033-5734052 None:intergenic 50.0%
!! TGATGGCTTTGATGTCGTGC+AGG + chr1_1:5734181-5734200 Msa0003220:intron 50.0%
CTTCAGGAATCACCGGAAGA+TGG + chr1_1:5734437-5734456 Msa0003220:intron 50.0%
!! AATCACCGGAAGATGGTGGA+TGG + chr1_1:5734444-5734463 Msa0003220:CDS 50.0%
TCATGCCATCCACCATCTTC+CGG - chr1_1:5734452-5734471 None:intergenic 50.0%
! GTAGTGACCAGTGGCTTTTG+AGG - chr1_1:5735075-5735094 None:intergenic 50.0%
! CATTTTCGTCAACTCCCTGC+TGG + chr1_1:5735114-5735133 Msa0003220:CDS 50.0%
!! ACCATGGTGTTGGCTCTATC+CGG - chr1_1:5735485-5735504 None:intergenic 50.0%
!!! GTGTTGTTTTGCAGGGCATG+AGG + chr1_1:5735561-5735580 Msa0003220:intron 50.0%
!! AAACAGGGCACAAGAGTGTC+TGG + chr1_1:5735711-5735730 Msa0003220:intron 50.0%
CTCTTCCTGAGATAGAGGAG+TGG - chr1_1:5735760-5735779 None:intergenic 50.0%
CAGTAGTAGACACGGTCAGA+AGG + chr1_1:5736148-5736167 Msa0003220:CDS 50.0%
GTAGTAGACACGGTCAGAAG+GGG + chr1_1:5736150-5736169 Msa0003220:CDS 50.0%
GTGATGCCTTCTACAGTCCA+GGG - chr1_1:5736209-5736228 None:intergenic 50.0%
AAGATCCATTCTCGTGGACG+AGG + chr1_1:5736939-5736958 Msa0003220:CDS 50.0%
AGATCCATTCTCGTGGACGA+GGG + chr1_1:5736940-5736959 Msa0003220:CDS 50.0%
GGCCTGTGCAGATTCTTACA+AGG + chr1_1:5736961-5736980 Msa0003220:CDS 50.0%
TCTTACAAGGCAACCTGCTG+AGG + chr1_1:5736974-5736993 Msa0003220:CDS 50.0%
CTTACAAGGCAACCTGCTGA+GGG + chr1_1:5736975-5736994 Msa0003220:CDS 50.0%
TTACAAGGCAACCTGCTGAG+GGG + chr1_1:5736976-5736995 Msa0003220:CDS 50.0%
! CGTGATGGAGGTCTTCGATT+TGG + chr1_1:5737005-5737024 Msa0003220:CDS 50.0%
AAGTCCATGGTGTTCTCTCC+TGG + chr1_1:5737253-5737272 Msa0003220:intron 50.0%
GCTGCTCTTCCAAGAGCTAA+TGG + chr1_1:5737345-5737364 Msa0003220:CDS 50.0%
! TGGCCATAGCCATTAGCTCT+TGG - chr1_1:5737357-5737376 None:intergenic 50.0%
ACGAGAGGAAGCAGTCAACA+TGG - chr1_1:5737479-5737498 None:intergenic 50.0%
GAACGTGGATCACACACACA+TGG + chr1_1:5737499-5737518 Msa0003220:three_prime_UTR 50.0%
GATGAGGCTACTGGGTTAAG+AGG - chr1_1:5737688-5737707 None:intergenic 50.0%
GAGGTAGTGATGAGGCTACT+GGG - chr1_1:5737696-5737715 None:intergenic 50.0%
TAGGAAGCGAGGTAGTGATG+AGG - chr1_1:5737704-5737723 None:intergenic 50.0%
CAGATGCGATATAGGAAGCG+AGG - chr1_1:5737715-5737734 None:intergenic 50.0%
CTCGCTTCCTATATCGCATC+TGG + chr1_1:5737713-5737732 Msa0003220:three_prime_UTR 50.0%
CCTCAGCGAAATCGGACTGA+TGG - chr1_1:5728332-5728351 None:intergenic 55.0%
CCATCAGTCCGATTTCGCTG+AGG + chr1_1:5728329-5728348 Msa0003220:CDS 55.0%
CACAATTAGGAGGCTAGGGG+CGG - chr1_1:5729579-5729598 None:intergenic 55.0%
TGTGGGTGAAGTTCGGTCCA+TGG + chr1_1:5730429-5730448 Msa0003220:CDS 55.0%
GTTTGTGCGCATGCTCTCTC+GGG + chr1_1:5730483-5730502 Msa0003220:CDS 55.0%
!! TCTCTCGGGCTAGTGCCAAA+GGG + chr1_1:5730497-5730516 Msa0003220:CDS 55.0%
TTGCCCTGAAGAACCCTGGT+AGG - chr1_1:5730638-5730657 None:intergenic 55.0%
ATTGGGGTTTGTCGCCGACA+AGG + chr1_1:5730720-5730739 Msa0003220:CDS 55.0%
CAAGTGCGCACAGAAGTAGC+CGG - chr1_1:5731890-5731909 None:intergenic 55.0%
GGCTACTTCTGTGCGCACTT+GGG + chr1_1:5731889-5731908 Msa0003220:CDS 55.0%
TACTTCTGTGCGCACTTGGG+CGG + chr1_1:5731892-5731911 Msa0003220:CDS 55.0%
GCGGAGGGCTGAAGATGATA+GGG + chr1_1:5731911-5731930 Msa0003220:CDS 55.0%
AATAAGAGGCTGGACCTGGC+AGG + chr1_1:5731945-5731964 Msa0003220:CDS 55.0%
GACCTGGCAGGTCCTTTACT+TGG + chr1_1:5731957-5731976 Msa0003220:CDS 55.0%
CTGGCAGGTCCTTTACTTGG+CGG + chr1_1:5731960-5731979 Msa0003220:CDS 55.0%
TTGGGGGCAAGCAAATGCTG+CGG + chr1_1:5732312-5732331 Msa0003220:CDS 55.0%
AATGCTGCGGGTACTAGAGC+TGG + chr1_1:5732325-5732344 Msa0003220:CDS 55.0%
TGTCCGGCAGAAACACCAGA+AGG + chr1_1:5733103-5733122 Msa0003220:CDS 55.0%
CAGGAATCACCGGAAGATGG+TGG + chr1_1:5734440-5734459 Msa0003220:intron 55.0%
GGGACTGATTGCACCACCAA+AGG - chr1_1:5734858-5734877 None:intergenic 55.0%
ATGGCTCTCGTAGTGACCAG+TGG - chr1_1:5735084-5735103 None:intergenic 55.0%
ACTGGTCACTACGAGAGCCA+TGG + chr1_1:5735083-5735102 Msa0003220:CDS 55.0%
! GTTTTGCAGGGCATGAGGCA+TGG + chr1_1:5735566-5735585 Msa0003220:intron 55.0%
GACATGCCCTGGACTGTAGA+AGG + chr1_1:5736200-5736219 Msa0003220:CDS 55.0%
GGTGATGCCTTCTACAGTCC+AGG - chr1_1:5736210-5736229 None:intergenic 55.0%
CGAGTGTATCATGGGGAAGG+TGG + chr1_1:5736289-5736308 Msa0003220:CDS 55.0%
GCTGCCCACATGGGAAAAGA+AGG + chr1_1:5736311-5736330 Msa0003220:CDS 55.0%
TGGAGCCGCTCACTTCCTAA+AGG + chr1_1:5737058-5737077 Msa0003220:CDS 55.0%
ATCCACAGCGTTCACACACG+TGG - chr1_1:5737118-5737137 None:intergenic 55.0%
AGCACCAGGAGAGAACACCA+TGG - chr1_1:5737260-5737279 None:intergenic 55.0%
ACTGCTTCCTCTCGTGAACG+TGG + chr1_1:5737484-5737503 Msa0003220:three_prime_UTR 55.0%
GTGTGATCCACGTTCACGAG+AGG - chr1_1:5737494-5737513 None:intergenic 55.0%
CGAGGTAGTGATGAGGCTAC+TGG - chr1_1:5737697-5737716 None:intergenic 55.0%
GCGAAATCGGACTGATGGCC+AGG - chr1_1:5728327-5728346 None:intergenic 60.0%
CGCCCCTAGCCTCCTAATTG+TGG + chr1_1:5729577-5729596 Msa0003220:intron 60.0%
GCAGCCCTCACCTTACAAGC+TGG + chr1_1:5729705-5729724 Msa0003220:intron 60.0%
!! CTCTCTCGGGCTAGTGCCAA+AGG + chr1_1:5730496-5730515 Msa0003220:CDS 60.0%
!! CTCTCGGGCTAGTGCCAAAG+GGG + chr1_1:5730498-5730517 Msa0003220:CDS 60.0%
GGAGTTGCTTCGTCCTTCCC+TGG + chr1_1:5730789-5730808 Msa0003220:CDS 60.0%
CGGCTACTTCTGTGCGCACT+TGG + chr1_1:5731888-5731907 Msa0003220:CDS 60.0%
GGCGGAGGGCTGAAGATGAT+AGG + chr1_1:5731910-5731929 Msa0003220:CDS 60.0%
CGCCAAGTAAAGGACCTGCC+AGG - chr1_1:5731962-5731981 None:intergenic 60.0%
TGGGGGCAAGCAAATGCTGC+GGG + chr1_1:5732313-5732332 Msa0003220:CDS 60.0%
GTAGCTTGGGGAATCACCGC+AGG - chr1_1:5733434-5733453 None:intergenic 60.0%
GCCGGATAGAGCCAACACCA+TGG + chr1_1:5735481-5735500 Msa0003220:CDS 60.0%
!! GGGCACAAGAGTGTCTGGTG+AGG + chr1_1:5735716-5735735 Msa0003220:intron 60.0%
CACGGTCAGAAGGGGACTGT+TGG + chr1_1:5736158-5736177 Msa0003220:CDS 60.0%
GTCCACGTGTGTGAACGCTG+TGG + chr1_1:5737113-5737132 Msa0003220:CDS 60.0%
TTCTGTGCGCACTTGGGCGG+AGG + chr1_1:5731895-5731914 Msa0003220:CDS 65.0%
TCTGTGCGCACTTGGGCGGA+GGG + chr1_1:5731896-5731915 Msa0003220:CDS 65.0%
GGGAAGGTGGCTGCCCACAT+GGG + chr1_1:5736302-5736321 Msa0003220:CDS 65.0%
CAGGCCCTCGTCCACGAGAA+TGG - chr1_1:5736947-5736966 None:intergenic 65.0%
CAAGGCAACCTGCTGAGGGG+CGG + chr1_1:5736979-5736998 Msa0003220:CDS 65.0%
GGGGAAGGTGGCTGCCCACA+TGG + chr1_1:5736301-5736320 Msa0003220:CDS 70.0%
TCACGTGACCGCCCCTCAGC+AGG - chr1_1:5736990-5737009 None:intergenic 70.0%
GCTGAGGGGCGGTCACGTGA+TGG + chr1_1:5736990-5737009 Msa0003220:CDS 70.0%
GAGGGGCGGTCACGTGATGG+AGG + chr1_1:5736993-5737012 Msa0003220:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 5727955 5737986 5727955 ID=Msa0003220;Name=Msa0003220
chr1_1 mRNA 5727955 5737986 5727955 ID=Msa0003220-mRNA-1;Parent=Msa0003220;Name=Msa0003220-mRNA-1;_AED=0.09;_eAED=0.09;_QI=138|1|1|1|1|1|25|545|1195
chr1_1 exon 5727955 5728350 5727955 ID=Msa0003220-mRNA-1:exon:1679;Parent=Msa0003220-mRNA-1
chr1_1 exon 5729302 5729523 5729302 ID=Msa0003220-mRNA-1:exon:1680;Parent=Msa0003220-mRNA-1
chr1_1 exon 5730229 5730519 5730229 ID=Msa0003220-mRNA-1:exon:1681;Parent=Msa0003220-mRNA-1
chr1_1 exon 5730643 5730840 5730643 ID=Msa0003220-mRNA-1:exon:1682;Parent=Msa0003220-mRNA-1
chr1_1 exon 5731566 5731630 5731566 ID=Msa0003220-mRNA-1:exon:1683;Parent=Msa0003220-mRNA-1
chr1_1 exon 5731717 5731803 5731717 ID=Msa0003220-mRNA-1:exon:1684;Parent=Msa0003220-mRNA-1
chr1_1 exon 5731875 5731995 5731875 ID=Msa0003220-mRNA-1:exon:1685;Parent=Msa0003220-mRNA-1
chr1_1 exon 5732095 5732139 5732095 ID=Msa0003220-mRNA-1:exon:1686;Parent=Msa0003220-mRNA-1
chr1_1 exon 5732220 5732357 5732220 ID=Msa0003220-mRNA-1:exon:1687;Parent=Msa0003220-mRNA-1
chr1_1 exon 5732457 5732529 5732457 ID=Msa0003220-mRNA-1:exon:1688;Parent=Msa0003220-mRNA-1
chr1_1 exon 5733053 5733129 5733053 ID=Msa0003220-mRNA-1:exon:1689;Parent=Msa0003220-mRNA-1
chr1_1 exon 5733228 5733335 5733228 ID=Msa0003220-mRNA-1:exon:1690;Parent=Msa0003220-mRNA-1
chr1_1 exon 5733422 5733538 5733422 ID=Msa0003220-mRNA-1:exon:1691;Parent=Msa0003220-mRNA-1
chr1_1 exon 5734203 5734358 5734203 ID=Msa0003220-mRNA-1:exon:1692;Parent=Msa0003220-mRNA-1
chr1_1 exon 5734443 5734547 5734443 ID=Msa0003220-mRNA-1:exon:1693;Parent=Msa0003220-mRNA-1
chr1_1 exon 5734659 5734784 5734659 ID=Msa0003220-mRNA-1:exon:1694;Parent=Msa0003220-mRNA-1
chr1_1 exon 5734874 5734951 5734874 ID=Msa0003220-mRNA-1:exon:1695;Parent=Msa0003220-mRNA-1
chr1_1 exon 5735045 5735140 5735045 ID=Msa0003220-mRNA-1:exon:1696;Parent=Msa0003220-mRNA-1
chr1_1 exon 5735226 5735341 5735226 ID=Msa0003220-mRNA-1:exon:1697;Parent=Msa0003220-mRNA-1
chr1_1 exon 5735433 5735502 5735433 ID=Msa0003220-mRNA-1:exon:1698;Parent=Msa0003220-mRNA-1
chr1_1 exon 5735575 5735628 5735575 ID=Msa0003220-mRNA-1:exon:1699;Parent=Msa0003220-mRNA-1
chr1_1 exon 5735717 5735860 5735717 ID=Msa0003220-mRNA-1:exon:1700;Parent=Msa0003220-mRNA-1
chr1_1 exon 5736062 5736361 5736062 ID=Msa0003220-mRNA-1:exon:1701;Parent=Msa0003220-mRNA-1
chr1_1 exon 5736789 5737211 5736789 ID=Msa0003220-mRNA-1:exon:1702;Parent=Msa0003220-mRNA-1
chr1_1 exon 5737322 5737986 5737322 ID=Msa0003220-mRNA-1:exon:1703;Parent=Msa0003220-mRNA-1
chr1_1 five_prime_UTR 5727955 5728092 5727955 ID=Msa0003220-mRNA-1:five_prime_utr;Parent=Msa0003220-mRNA-1
chr1_1 CDS 5728093 5728350 5728093 ID=Msa0003220-mRNA-1:cds;Parent=Msa0003220-mRNA-1
chr1_1 CDS 5729302 5729523 5729302 ID=Msa0003220-mRNA-1:cds;Parent=Msa0003220-mRNA-1
chr1_1 CDS 5730229 5730519 5730229 ID=Msa0003220-mRNA-1:cds;Parent=Msa0003220-mRNA-1
chr1_1 CDS 5730643 5730840 5730643 ID=Msa0003220-mRNA-1:cds;Parent=Msa0003220-mRNA-1
chr1_1 CDS 5731566 5731630 5731566 ID=Msa0003220-mRNA-1:cds;Parent=Msa0003220-mRNA-1
chr1_1 CDS 5731717 5731803 5731717 ID=Msa0003220-mRNA-1:cds;Parent=Msa0003220-mRNA-1
chr1_1 CDS 5731875 5731995 5731875 ID=Msa0003220-mRNA-1:cds;Parent=Msa0003220-mRNA-1
chr1_1 CDS 5732095 5732139 5732095 ID=Msa0003220-mRNA-1:cds;Parent=Msa0003220-mRNA-1
chr1_1 CDS 5732220 5732357 5732220 ID=Msa0003220-mRNA-1:cds;Parent=Msa0003220-mRNA-1
chr1_1 CDS 5732457 5732529 5732457 ID=Msa0003220-mRNA-1:cds;Parent=Msa0003220-mRNA-1
chr1_1 CDS 5733053 5733129 5733053 ID=Msa0003220-mRNA-1:cds;Parent=Msa0003220-mRNA-1
chr1_1 CDS 5733228 5733335 5733228 ID=Msa0003220-mRNA-1:cds;Parent=Msa0003220-mRNA-1
chr1_1 CDS 5733422 5733538 5733422 ID=Msa0003220-mRNA-1:cds;Parent=Msa0003220-mRNA-1
chr1_1 CDS 5734203 5734358 5734203 ID=Msa0003220-mRNA-1:cds;Parent=Msa0003220-mRNA-1
chr1_1 CDS 5734443 5734547 5734443 ID=Msa0003220-mRNA-1:cds;Parent=Msa0003220-mRNA-1
chr1_1 CDS 5734659 5734784 5734659 ID=Msa0003220-mRNA-1:cds;Parent=Msa0003220-mRNA-1
chr1_1 CDS 5734874 5734951 5734874 ID=Msa0003220-mRNA-1:cds;Parent=Msa0003220-mRNA-1
chr1_1 CDS 5735045 5735140 5735045 ID=Msa0003220-mRNA-1:cds;Parent=Msa0003220-mRNA-1
chr1_1 CDS 5735226 5735341 5735226 ID=Msa0003220-mRNA-1:cds;Parent=Msa0003220-mRNA-1
chr1_1 CDS 5735433 5735502 5735433 ID=Msa0003220-mRNA-1:cds;Parent=Msa0003220-mRNA-1
chr1_1 CDS 5735575 5735628 5735575 ID=Msa0003220-mRNA-1:cds;Parent=Msa0003220-mRNA-1
chr1_1 CDS 5735717 5735860 5735717 ID=Msa0003220-mRNA-1:cds;Parent=Msa0003220-mRNA-1
chr1_1 CDS 5736062 5736361 5736062 ID=Msa0003220-mRNA-1:cds;Parent=Msa0003220-mRNA-1
chr1_1 CDS 5736789 5737211 5736789 ID=Msa0003220-mRNA-1:cds;Parent=Msa0003220-mRNA-1
chr1_1 CDS 5737322 5737441 5737322 ID=Msa0003220-mRNA-1:cds;Parent=Msa0003220-mRNA-1
chr1_1 three_prime_UTR 5737442 5737986 5737442 ID=Msa0003220-mRNA-1:three_prime_utr;Parent=Msa0003220-mRNA-1
Gene Sequence

>Msa0003220

ATGATGATGGATTTGGAAGAAGAAAACGAATTCGACCAGCAAATGGAAGAGGAAGACGATGAGGAAGAAATCACCCAAGAAGATGCTTGGGCTGTGATCTCTGCTTATTTTGAAGAAAAAGGACTTGTCCGTCAACAGCTTGATTCCTTCGATGAATTCATCCAGAACACCATGCAGGAGATAGTTGATGAATCCGCTGATATCGAAATTCGACCCGAATCTCAGCATAATCCTGGCCATCAGTCCGATTTCGCTGAGACGATTTATAAGATAAGCTTCGGTCAGATTTATTTGAGTAAGCCAATGATGACGGAATCTGATGGAGAAACTGCTACATTGTTTCCTAAAGCTGCTAGGCTTAGGAATCTGACGTATTCAGCTCCTTTGTATGTTGATGTTTCTAAGAGGGTCATTAAGAAAGGGCATGATGGTGAAGAGGTCACTGAGACTCAAGATTTCACCAAAGTTTTCATTGGCAAGGTTCCTATTATGCTTCGGTCTAGTTATTGCACACTATATCAGAATTCAGAGAAGGATTTGACCGAGCTTGGAGAGTGTCCGTATGATCAAGGAGGTTATTTCATTATTAATGGCAGTGAGAAGGTTCTTATTGCTCAGGAGAAGATGAGCACCAATCATGTCTATGTCTTTAAGAAGAGGCAACCTAACAAGTATGCTTATGTGGGTGAAGTTCGGTCCATGGCAGAGTCACAAAACAGACCACCTAGCACTATGTTTGTGCGCATGCTCTCTCGGGCTAGTGCCAAAGGGGGTTCTTCAGGGCAATATATACGTGCTACTCTTCCTTACATTCGAACTGAAATTCCTATCATTATTGTGTTTCGGGCATTGGGGTTTGTCGCCGACAAGGATATCCTTGAACATATATGCTATGACTTTGCGGATACTCAAATGATGGAGTTGCTTCGTCCTTCCCTGGAAGAAGCATTTGTGATACAAAATCAACAGGTTGCACTTGATTATATTGGAAAAAGAGGATCAACTGTAGGTGTAACCAAGGAAAAGAGAATTAAGTATGCTAAGGACATCCTTCAAAAGGAGATGCTTCCCCATGTTGGTGTTGGAGAGTATTGCGAGACTAAAAAAGCATACTATTTTGGATATATCATTCACCGGCTACTTCTGTGCGCACTTGGGCGGAGGGCTGAAGATGATAGGGATCATTATGGAAATAAGAGGCTGGACCTGGCAGGTCCTTTACTTGGCGGACTCTTTAGAATGCTATTCAGAAAGTTGACTAGAGATGTCAGGGGTTATGTGCAAAAGTGTGTTGATAATGGGAAGGATGTTAACCTGCAATTTGCTATCAAAGCAAAAACCATCACAAGTGGACTTAAGTACTCACTTGCTACTGGTAATTGGGGGCAAGCAAATGCTGCGGGTACTAGAGCTGGAGTGTCACAGGTGCTAAATCGTTTAACCTATGCTTCCACTTTATCACACTTGCGAAGATTGAATTCTCCTATAGGACGTGAAGGAAAGTTGGCCAAACCAAGACAGCTGCATAATTCACAATGGGGAATGATGTGTCCGGCAGAAACACCAGAAGGACAAGCCTGTGGACTGGTGAAGAATCTGGCCTTGATGGTATACATTACAGTTGGTTCAGCAGCATATCCTATTCTGGAGTTTTTAGAAGAATGGGGCACAGAAAATTTTGAGGAAATTTCTCCTGCGGTGATTCCCCAAGCTACAAAAATTTTCGTAAATGGTTGCTGGATGGGTATTCATCGCGACCCTGATATGTTGGTTAGGACATTGAGAAAGCTGAGACGTCGGGTTGATGTTAATACTGAAGTTGGGGTTGTTAGAGATATCCGTCTTAAAGAACTGCGCATATATACAGATTATGGTCGCTGCAGTCGTCCTTTATTCATTGTGGATAAACAAAGGCTTCTCATAAAGAAGAAAGACATTCATTCTTTGCAGCAAAGGGAATCACCGGAAGATGGTGGATGGCATGATCTTGTGTCCAAGGGCTTTATAGAATATATCGACACAGAAGAGGAAGAGACTACTATGATTTCCATGACAATTAATGATCTTGTACAAGCAAGGCTGAATCCAGAAGAAGCATATTCTGATACTTACACTCACTGTGAAATCCATCCATCACTGATTTTGGGTGTATGTGCGTCCATCATACCATTTCCTGACCACAATCAGTCCCCTCGTAATACGTATCAGTCTGCTATGGGAAAACAGGCAATGGGAATTTATGTTACCAACTACCAGTTTCGAATGGATACCTTGGCGTATGTTTTATATTATCCTCAAAAGCCACTGGTCACTACGAGAGCCATGGAGCATCTTCATTTTCGTCAACTCCCTGCTGGAATTAATGCCATTGTGGCCATTTCATGTTATTCTGGTTATAATCAAGAAGATTCTGTCATCATGAACCAATCATCAATAGACCGTGGCTTCTTTCGGTCTCTATTTTTCCGTTCATATAGAGATGAAGAGAAAAAAATGGGAACTCTTGTCAAAGAAGATTTTGGTCGGCCGGATAGAGCCAACACCATGGGCATGAGGCATGGTTCTTATGATAAATTGGATGATGATGGTCTTGCTCCACCTGGCACAAGAGTGTCTGGTGAGGATGTTATTATTGGAAAAACCACTCCTCTATCTCAGGAAGAGCAACAAGGACAAGCTGCTCGTTACTCAAAACGTGATCACAGCATAAGTTTACGCCATAGTGAAACTGGAATAGTAGATCAAGTTCTGTTGACCACAAATGCTGATGGGTTGAGATTCGTGAAAGTAAGGGTGAGATCTGTTCGAATACCACAGATTGGTGACAAATTCAGTAGTAGACACGGTCAGAAGGGGACTGTTGGTATGACTTATACACAAGAAGACATGCCCTGGACTGTAGAAGGCATCACCCCTGATATTATTGTCAATCCACATGCTATACCTTCTCGAATGACAATTGGTCAGCTTATCGAGTGTATCATGGGGAAGGTGGCTGCCCACATGGGAAAAGAAGGAGATGCTACTCCTTTTACAGATGTTACTGTGGATAATATCAGCAAAGCTTTACACAAATGTGGGTACCAAATGCGTGGTTTTGAGACAATGTACAATGGTCATACAGGAAGGCGTCTCAGTGCAATGATTTTCCTTGGGCCTACCTATTACCAAAGGTTGAAGCATATGGTTGATGACAAGATCCATTCTCGTGGACGAGGGCCTGTGCAGATTCTTACAAGGCAACCTGCTGAGGGGCGGTCACGTGATGGAGGTCTTCGATTTGGAGAGATGGAACGTGATTGCATGATTGCTCATGGAGCCGCTCACTTCCTAAAGGAAAGACTGTTTGATCAAAGTGATGCATATAGAGTCCACGTGTGTGAACGCTGTGGATTGATAGCTATTGCAAATCTGAAGAAGAATTCTTTTGAGTGTAGGGGCTGCAAGAACAAAACTGACATTGTTCAGGTTTATATTCCTTATGCTTGTAAGCTGCTCTTCCAAGAGCTAATGGCTATGGCCATAGCTCCAAGAATGCTTACTAAAGAGGTGAAAGCTATAAAAGACCAAAAGAAGAAAGGAGCCTGA
Protein sequence

>Msa0003220

MMMDLEEENEFDQQMEEEDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAESQNRPPSTMFVRMLSRASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKDILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWMGIHRDPDMLVRTLRKLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHSLQQRESPEDGGWHDLVSKGFIEYIDTEEEETTMISMTINDLVQARLNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPLSQEEQQGQAARYSKRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMLTKEVKAIKDQKKKGA*