AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0363060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0363060 MtrunA17_Chr3g0114041 95.910 489 20 0 1 489 1 489 0.0 946
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0363060 AT1G09870.1 66.049 486 151 4 2 482 3 479 0.0 678

Find 139 sgRNAs with CRISPR-Local

Find 348 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCCAAAGGTTTCTCCTTC+TGG 0.189619 3_1:+55141254 None:intergenic
GATAAGGGAGTTGGATAATT+TGG 0.198521 3_1:-55144447 Msa0363060:CDS
AACAAACTAAAATTCATCTT+TGG 0.224993 3_1:+55140432 None:intergenic
TCTGCATTAGTTGGGCGATA+TGG 0.234052 3_1:-55143139 Msa0363060:CDS
CTCACCTGAGTTGCCTTTAT+AGG 0.241933 3_1:+55144206 None:intergenic
GGAAAAGCCACTGAAATATT+TGG 0.256257 3_1:+55140476 None:intergenic
CTGAAACGTGTTAGAGAAAA+TGG 0.264760 3_1:-55145595 Msa0363060:exon
AGAGTTCCGTCTTGGTTAAA+TGG 0.267555 3_1:-55144368 Msa0363060:CDS
ACCACAAGATTTAAATGAAT+TGG 0.280692 3_1:+55145299 None:intergenic
CGATACCACTTAACAAATTC+AGG 0.284250 3_1:-55140363 Msa0363060:three_prime_UTR
ACAAACTAAAATTCATCTTT+GGG 0.293290 3_1:+55140433 None:intergenic
CTGCCAGACAAGAATGTCTT+TGG 0.320975 3_1:-55140291 Msa0363060:three_prime_UTR
TAAACTTAAGGAACCTATCT+TGG 0.324606 3_1:-55143173 Msa0363060:CDS
GGTTACGAGAGCAGGATTTC+AGG 0.325108 3_1:-55143219 Msa0363060:intron
TCAGCTAGTGCTGTGGCATT+TGG 0.337150 3_1:-55143908 Msa0363060:CDS
CAGTGAAATCGATGTAAAAT+TGG 0.339679 3_1:+55140311 None:intergenic
GCGTTTATTCTGAAGGGTTA+TGG 0.350250 3_1:-55142478 Msa0363060:CDS
AATTGTTTGAACTTGGAATC+AGG 0.360982 3_1:-55144283 Msa0363060:CDS
ATTAACAGAACAAGAGTGAT+TGG 0.372565 3_1:+55145567 None:intergenic
GGTTTATTTCTTGAAGAGTC+TGG 0.374217 3_1:-55141393 Msa0363060:intron
GAAAGAGCGGAAATTGTCTT+TGG 0.377125 3_1:-55144393 Msa0363060:CDS
AGCCTCCACAGAAAAGAAAA+TGG 0.377131 3_1:-55141222 Msa0363060:CDS
GGATAATTTGGCAGCTCAAT+TGG 0.379258 3_1:-55144435 Msa0363060:CDS
CTGCATTAGTTGGGCGATAT+GGG 0.380850 3_1:-55143138 Msa0363060:CDS
GAGGAAGAATTGTTTGAACT+TGG 0.384481 3_1:-55144290 Msa0363060:CDS
TCCTTGGCATGGAAGGCTTA+AGG 0.388404 3_1:-55144336 Msa0363060:CDS
TTCAGTGGCAATGGAACTCT+TGG 0.391689 3_1:-55143875 Msa0363060:CDS
TCCAGACATATATCCTATAA+AGG 0.391852 3_1:-55144219 Msa0363060:CDS
GAGATTACATCTGCATTAGT+TGG 0.394671 3_1:-55143148 Msa0363060:CDS
AAATCACTAAATTATAGAAT+GGG 0.395225 3_1:-55142454 Msa0363060:CDS
CCTTGGCATGGAAGGCTTAA+GGG 0.397783 3_1:-55144335 Msa0363060:CDS
GTGTACATAGATTACATTGC+TGG 0.401467 3_1:-55142521 Msa0363060:intron
AAGCTTACCGGCATTGGAAT+GGG 0.404546 3_1:+55141085 None:intergenic
TGAATTGGAGTACATCCTTC+AGG 0.410928 3_1:+55145314 None:intergenic
GTGTAGCAGCTTTAGATAAA+CGG 0.412005 3_1:-55140030 Msa0363060:three_prime_UTR
GTCCCATTCTCATGTCTGCT+TGG 0.418022 3_1:-55141414 Msa0363060:CDS
CTGTCCGTTTGAAGTATTCA+AGG 0.418996 3_1:-55140694 Msa0363060:intron
CTCAATTGGAAGATCTTGTA+AGG 0.426286 3_1:-55144421 Msa0363060:CDS
CTGCAAAAGCTTACCGGCAT+TGG 0.427821 3_1:+55141079 None:intergenic
CTGTATAGTTGTCCTGAGTC+AGG 0.429497 3_1:-55141154 Msa0363060:CDS
TCTCTGGTTCTTATGTAAAC+AGG 0.431034 3_1:-55143086 Msa0363060:intron
TCCAATTCATTTAAATCTTG+TGG 0.437346 3_1:-55145300 Msa0363060:intron
CTCCAACAAAGAAAAGGATA+AGG 0.449527 3_1:-55144463 Msa0363060:CDS
TAAATCACTAAATTATAGAA+TGG 0.454360 3_1:-55142455 Msa0363060:CDS
CACAGCACTAGCTGATGCTC+GGG 0.455439 3_1:+55143916 None:intergenic
CTGACTCAGGACAACTATAC+AGG 0.456860 3_1:+55141155 None:intergenic
GGAAATCTCCTTGGCATGGA+AGG 0.458503 3_1:-55144343 Msa0363060:CDS
AGAGTATAAAACTTCTCTTT+CGG 0.460626 3_1:-55145650 Msa0363060:five_prime_UTR
GGCAATGGAACTCTTGGAAC+TGG 0.464325 3_1:-55143869 Msa0363060:CDS
GACACCTTGAATACTTCAAA+CGG 0.469906 3_1:+55140690 None:intergenic
TGTCTTTGGTATCTTAAGCT+TGG 0.473995 3_1:-55140277 Msa0363060:three_prime_UTR
AATCCAGAAGGAGAAACCTT+TGG 0.476956 3_1:-55141257 Msa0363060:CDS
ACCCGCAGTTGATAAACTTA+AGG 0.477325 3_1:-55143185 Msa0363060:CDS
CTCGTTCTCCAACAAAGAAA+AGG 0.480627 3_1:-55144469 Msa0363060:CDS
ATCATACTCCGTGGGGACTT+CGG 0.480684 3_1:+55140502 None:intergenic
AACATCTCTCCACCGTGTCC+AGG 0.481498 3_1:-55145485 Msa0363060:intron
TTCCGTCTTGGTTAAATGGA+TGG 0.483104 3_1:-55144364 Msa0363060:CDS
ATAACAGGAAGCATCCTTGT+TGG 0.485453 3_1:-55142931 Msa0363060:intron
AAAGCTTACCGGCATTGGAA+TGG 0.488189 3_1:+55141084 None:intergenic
TTGGAATCAGGATTAGAGAA+AGG 0.488890 3_1:-55144271 Msa0363060:CDS
TAGTGCTGTGGCATTTGGAA+TGG 0.489961 3_1:-55143903 Msa0363060:CDS
GGCTTTGGAGGTAGCTCCAA+AGG 0.490471 3_1:+55141241 None:intergenic
AGTGCTGTGGCATTTGGAAT+GGG 0.491271 3_1:-55143902 Msa0363060:CDS
CTTTGGAGAGAGTTCCGTCT+TGG 0.491832 3_1:-55144376 Msa0363060:CDS
AAAGAAAAGGATAAGGGAGT+TGG 0.492650 3_1:-55144456 Msa0363060:CDS
TCCACAGAAAAGAAAATGGC+GGG 0.494438 3_1:-55141218 Msa0363060:CDS
TCCTTAAGTTTATCAACTGC+GGG 0.494728 3_1:+55143184 None:intergenic
TTGAGAAATGTAAAATTGAA+AGG 0.497137 3_1:+55145538 None:intergenic
AGATTACATCTGCATTAGTT+GGG 0.499233 3_1:-55143147 Msa0363060:CDS
GCCTTTATAGGATATATGTC+TGG 0.504217 3_1:+55144218 None:intergenic
AACCAAGCAGACATGAGAAT+GGG 0.505960 3_1:+55141412 None:intergenic
CATTCAACACACACAAAAGT+AGG 0.506214 3_1:+55140056 None:intergenic
TGAAGATGTTGTTCAATCCA+TGG 0.509427 3_1:-55142419 Msa0363060:CDS
AGCATGTTGTTACCAGCAAA+AGG 0.511702 3_1:+55141181 None:intergenic
ATACCAAAGACATTCTTGTC+TGG 0.512453 3_1:+55140288 None:intergenic
GGCAGATTACATCATCTCTC+TGG 0.512633 3_1:-55143102 Msa0363060:CDS
CTTGGAGGCGTTTATTCTGA+AGG 0.514437 3_1:-55142485 Msa0363060:CDS
GATGTAATCTCATCCAAGAT+AGG 0.518769 3_1:+55143160 None:intergenic
TATTCACTACAGGGTTGTCA+TGG 0.519764 3_1:-55140726 Msa0363060:intron
AAACCAAGCAGACATGAGAA+TGG 0.520129 3_1:+55141411 None:intergenic
TAGTTTCTGCATGAGCAAAC+CGG 0.522173 3_1:+55141439 None:intergenic
GGGTTGTCACCTTTCGCTAG+TGG 0.522205 3_1:+55140454 None:intergenic
CCACAGCACTAGCTGATGCT+CGG 0.526889 3_1:+55143915 None:intergenic
ACAATAAGTCAGAAGATGGC+TGG 0.530847 3_1:+55140085 None:intergenic
TTCCTTAAGTTTATCAACTG+CGG 0.537280 3_1:+55143183 None:intergenic
GGTTGTCACCTTTCGCTAGT+GGG 0.540533 3_1:+55140455 None:intergenic
CAAGCTATTAAAGCTGAAGA+AGG 0.543650 3_1:-55142394 Msa0363060:intron
CATTACAATAAGTCAGAAGA+TGG 0.546917 3_1:+55140081 None:intergenic
TTCCATCCATTTAACCAAGA+CGG 0.547637 3_1:+55144362 None:intergenic
TGAACAACATCTTCAAGTAA+TGG 0.551000 3_1:+55142427 None:intergenic
TAATGCCTGAATTTGTTAAG+TGG 0.551029 3_1:+55140358 None:intergenic
TGAACACCCCATTCCAATGC+CGG 0.551126 3_1:-55141092 Msa0363060:intron
AGCTTTAATAGCTTGCTCCA+TGG 0.551216 3_1:+55142402 None:intergenic
TCCAACAAAGAAAAGGATAA+GGG 0.553218 3_1:-55144462 Msa0363060:CDS
TTGGAGGCGTTTATTCTGAA+GGG 0.560325 3_1:-55142484 Msa0363060:CDS
ACTAATTCCACAGATGATGT+AGG 0.560571 3_1:-55140193 Msa0363060:three_prime_UTR
TGAGTTAATTAGACTAGGAG+AGG 0.561048 3_1:-55144309 Msa0363060:CDS
TAAATGGATGGAAATCTCCT+TGG 0.561808 3_1:-55144352 Msa0363060:CDS
ATTCCTTCTAAAATTCCTGA+AGG 0.565594 3_1:-55145329 Msa0363060:CDS
CATAGATTACATTGCTGGAG+TGG 0.565831 3_1:-55142516 Msa0363060:intron
ATATCCTATAAAGGCAACTC+AGG 0.566710 3_1:-55144210 Msa0363060:intron
CCCTTAAGCCTTCCATGCCA+AGG 0.571283 3_1:+55144335 None:intergenic
GGATGGAAATCTCCTTGGCA+TGG 0.574233 3_1:-55144347 Msa0363060:CDS
TTACATTCCCAGGCAAGGCA+TGG 0.576004 3_1:-55144494 Msa0363060:intron
GCTGGAGTGGACAGATGACT+TGG 0.580590 3_1:-55142503 Msa0363060:CDS
TGATTGTTGTCATAACTACA+AGG 0.582799 3_1:-55143783 Msa0363060:intron
GTTTCCGAGTTTGTTTGATG+AGG 0.592314 3_1:-55144249 Msa0363060:CDS
CAAACTAAAATTCATCTTTG+GGG 0.598005 3_1:+55140434 None:intergenic
TTTGTTAAGTGGTATCGCCA+AGG 0.602245 3_1:+55140369 None:intergenic
TGATATTCCAAATATTTCAG+TGG 0.604907 3_1:-55140483 Msa0363060:CDS
TTATAGGATATATGTCTGGA+TGG 0.605414 3_1:+55144222 None:intergenic
AGCAAGAGCCGAAGTCCCCA+CGG 0.607859 3_1:-55140510 Msa0363060:CDS
ATATCAACCTACATCATCTG+TGG 0.608476 3_1:+55140186 None:intergenic
GACTACAAAAGTACCTCCGA+TGG 0.608670 3_1:+55142876 None:intergenic
CTCCACAGAAAAGAAAATGG+CGG 0.614630 3_1:-55141219 Msa0363060:CDS
AATCACTAAATTATAGAATG+GGG 0.619098 3_1:-55142453 Msa0363060:CDS
AGCTTACCGGCATTGGAATG+GGG 0.620507 3_1:+55141086 None:intergenic
GGAGTGGACAGATGACTTGG+AGG 0.620597 3_1:-55142500 Msa0363060:CDS
TTTGGAATATCATACTCCGT+GGG 0.629623 3_1:+55140494 None:intergenic
AGAGTTTGACAAAATCCAGA+AGG 0.633058 3_1:-55141269 Msa0363060:CDS
CCGAGCATCAGCTAGTGCTG+TGG 0.634420 3_1:-55143915 Msa0363060:CDS
TAGTCCTCATCAAACAAACT+CGG 0.636591 3_1:+55144245 None:intergenic
TCAGCATGATGTCACTAGCA+CGG 0.641327 3_1:+55143813 None:intergenic
ATTTGGAATATCATACTCCG+TGG 0.648452 3_1:+55140493 None:intergenic
ACTACAAAAGTACCTCCGAT+GGG 0.652789 3_1:+55142877 None:intergenic
CCACAGAAAAGAAAATGGCG+GGG 0.653168 3_1:-55141217 Msa0363060:CDS
TCAATTGGAAGATCTTGTAA+GGG 0.653285 3_1:-55144420 Msa0363060:CDS
GTTACCAGCAAAAGGAGCCA+CGG 0.657381 3_1:+55141189 None:intergenic
ACAGCACTAGCTGATGCTCG+GGG 0.659608 3_1:+55143917 None:intergenic
AAAATGGCGGGGCAGCACCG+TGG 0.668105 3_1:-55141206 Msa0363060:CDS
TCATAGTCATGCTTCCGATG+AGG 0.671044 3_1:+55140550 None:intergenic
TTGTAAGGGATGCGAAAGAG+CGG 0.675487 3_1:-55144406 Msa0363060:CDS
GGCGGTGAGTTAATTAGACT+AGG 0.684077 3_1:-55144314 Msa0363060:CDS
GGAGAGAAACCTGGACACGG+TGG 0.707163 3_1:+55145476 None:intergenic
TTGATCAGTTATATCCAACA+AGG 0.711218 3_1:+55142917 None:intergenic
TAGGGAGAGAAACCTGGACA+CGG 0.718165 3_1:+55145473 None:intergenic
TTGGAATATCATACTCCGTG+GGG 0.720958 3_1:+55140495 None:intergenic
TGGCATGGAAGGCTTAAGGG+CGG 0.726071 3_1:-55144332 Msa0363060:CDS
GGTTCGCTGCTAGAAGAATG+TGG 0.735067 3_1:+55140332 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATATATCCATAAAAAA+AGG + chr3_1:55142406-55142425 None:intergenic 10.0%
!! TATTTAAATAATATTTACAG+AGG + chr3_1:55142834-55142853 None:intergenic 10.0%
!!! TATTTTATTTATATTCCTTT+TGG - chr3_1:55143860-55143879 Msa0363060:CDS 10.0%
!!! AATTTTATCAATTTCTATTT+TGG - chr3_1:55144308-55144327 Msa0363060:CDS 10.0%
!! TTATGGATATATAATTTCTT+TGG - chr3_1:55142410-55142429 Msa0363060:CDS 15.0%
!! AATAAAATTTAAAAGATGTC+AGG - chr3_1:55142850-55142869 Msa0363060:intron 15.0%
!! AACAATAATTTATATGCATT+TGG + chr3_1:55142987-55143006 None:intergenic 15.0%
!! TAAATCACTAAATTATAGAA+TGG - chr3_1:55143195-55143214 Msa0363060:CDS 15.0%
!! AAATCACTAAATTATAGAAT+GGG - chr3_1:55143196-55143215 Msa0363060:CDS 15.0%
!!! TTTAGCATTTTTTAATATTG+AGG - chr3_1:55143282-55143301 Msa0363060:intron 15.0%
!!! AACTATGCATTTTTTAATAA+CGG - chr3_1:55143903-55143922 Msa0363060:CDS 15.0%
!! TTGAGAAATGTAAAATTGAA+AGG + chr3_1:55140115-55140134 None:intergenic 20.0%
!!! AAATTGATAATCTAGAATGT+TGG + chr3_1:55140212-55140231 None:intergenic 20.0%
!! AGAAAATTAACAAACACAAT+TGG + chr3_1:55140258-55140277 None:intergenic 20.0%
!!! TGTTTGTTAATTTTCTTTGA+AGG - chr3_1:55140262-55140281 Msa0363060:three_prime_UTR 20.0%
!!! AGATTATCTTTTTAAACCAT+TGG - chr3_1:55140692-55140711 Msa0363060:intron 20.0%
!!! GATTATCTTTTTAAACCATT+GGG - chr3_1:55140693-55140712 Msa0363060:intron 20.0%
!!! AACTTCATTTTTTATGACAT+CGG - chr3_1:55140790-55140809 Msa0363060:intron 20.0%
!!! CATAGTTTTGTTTTTGTTTT+AGG - chr3_1:55140930-55140949 Msa0363060:intron 20.0%
!!! TTGTTTGTTTGTTTTAGAAA+CGG + chr3_1:55141070-55141089 None:intergenic 20.0%
!!! ATGAAATTGACTTGATATTT+TGG - chr3_1:55141675-55141694 Msa0363060:intron 20.0%
!! GACACTAAAATTTATGAAAT+TGG + chr3_1:55141988-55142007 None:intergenic 20.0%
!! AATCACTAAATTATAGAATG+GGG - chr3_1:55143197-55143216 Msa0363060:CDS 20.0%
!! GAAGAAGATTAAAATCAATA+TGG + chr3_1:55143795-55143814 None:intergenic 20.0%
!! AATTCCAGTTAGTATATAAT+TGG - chr3_1:55143989-55144008 Msa0363060:intron 20.0%
!!! TTCTCATTGTTTTGATTTAA+TGG - chr3_1:55144013-55144032 Msa0363060:intron 20.0%
!! ACAAACTAAAATTCATCTTT+GGG + chr3_1:55145220-55145239 None:intergenic 20.0%
!! AACAAACTAAAATTCATCTT+TGG + chr3_1:55145221-55145240 None:intergenic 20.0%
!!! TTTTAGTTTGTTCTATTGAA+AGG - chr3_1:55145229-55145248 Msa0363060:intron 20.0%
!! TATTCCAAAAGATAAAAAAC+GGG + chr3_1:55145533-55145552 None:intergenic 20.0%
!! CTATTCCAAAAGATAAAAAA+CGG + chr3_1:55145534-55145553 None:intergenic 20.0%
! AGAGTATAAAACTTCTCTTT+CGG - chr3_1:55140000-55140019 Msa0363060:three_prime_UTR 25.0%
!!! GTTAATTTTCTTTGAAGGTA+CGG - chr3_1:55140267-55140286 Msa0363060:three_prime_UTR 25.0%
! TCCAATTCATTTAAATCTTG+TGG - chr3_1:55140350-55140369 Msa0363060:three_prime_UTR 25.0%
! ACCACAAGATTTAAATGAAT+TGG + chr3_1:55140354-55140373 None:intergenic 25.0%
!! GTCACTTTCCTAAATTATTA+CGG - chr3_1:55140506-55140525 Msa0363060:CDS 25.0%
! TCACTTTCCTAAATTATTAC+GGG - chr3_1:55140507-55140526 Msa0363060:CDS 25.0%
!! TTTTATATTGTTATGCTGCT+TGG - chr3_1:55140626-55140645 Msa0363060:intron 25.0%
!! TTTTTAAACCATTGGGAATT+GGG - chr3_1:55140700-55140719 Msa0363060:CDS 25.0%
!!! AATTGGGTTTTAAAACCATA+GGG - chr3_1:55140716-55140735 Msa0363060:CDS 25.0%
!! CTTAGAATCTCTTTTGATAT+TGG - chr3_1:55140826-55140845 Msa0363060:intron 25.0%
!! TCTTTTGATATTGGTGTATT+AGG - chr3_1:55140835-55140854 Msa0363060:intron 25.0%
!!! TGTTTTTGTTTTAGGAAGTT+TGG - chr3_1:55140938-55140957 Msa0363060:intron 25.0%
! ATTAATAACACTAACCAAAG+TGG + chr3_1:55141039-55141058 None:intergenic 25.0%
! AACAAACAAACAAAAACTAG+TGG - chr3_1:55141077-55141096 Msa0363060:intron 25.0%
! AATGATCATACTATTCCATT+TGG + chr3_1:55141124-55141143 None:intergenic 25.0%
!!! TATCTTCATTTTTTCCTTCT+AGG - chr3_1:55141469-55141488 Msa0363060:CDS 25.0%
! GATTTGATCTATTGAATATC+TGG - chr3_1:55141494-55141513 Msa0363060:intron 25.0%
!! ATAAGAAGCATATTTGCAAA+TGG + chr3_1:55142010-55142029 None:intergenic 25.0%
! GGAAAAAAATTATCATCGAA+AGG + chr3_1:55142131-55142150 None:intergenic 25.0%
! TTACATTAGAGTGACAAATA+TGG + chr3_1:55142236-55142255 None:intergenic 25.0%
! ATTATGAAGTGTGTTTAAAG+AGG - chr3_1:55142274-55142293 Msa0363060:intron 25.0%
!! GTGATTTTCAGTATTCTTAT+AGG - chr3_1:55142356-55142375 Msa0363060:intron 25.0%
!!! TATTTCTGGACCTTTTTTTA+TGG - chr3_1:55142393-55142412 Msa0363060:intron 25.0%
! TGTTATAAACCATCACAAAT+TGG + chr3_1:55142705-55142724 None:intergenic 25.0%
! AATTTGTGATGGTTTATAAC+AGG - chr3_1:55142704-55142723 Msa0363060:intron 25.0%
! AAAGAAACTGAAGTAGTAAA+AGG - chr3_1:55142943-55142962 Msa0363060:intron 25.0%
! AAGAAACTGAAGTAGTAAAA+GGG - chr3_1:55142944-55142963 Msa0363060:intron 25.0%
! TATATACATATTTGCTCTTC+AGG - chr3_1:55143334-55143353 Msa0363060:intron 25.0%
! TTTCCTGCTTTATAAGAAAA+TGG - chr3_1:55143768-55143787 Msa0363060:intron 25.0%
! TGCATAGTTCAAGAAAATAT+AGG + chr3_1:55143892-55143911 None:intergenic 25.0%
! AAAAAATGGAAATGAGTCAT+AGG + chr3_1:55144140-55144159 None:intergenic 25.0%
! CTACAGAAGCAATAAAAAAA+TGG + chr3_1:55144154-55144173 None:intergenic 25.0%
! TTATTGTGAATAGCTGAATT+TGG - chr3_1:55144662-55144681 Msa0363060:intron 25.0%
! TTATTGTGAATAGCTGAATT+TGG - chr3_1:55144662-55144681 Msa0363060:intron 25.0%
! TGATATTCCAAATATTTCAG+TGG - chr3_1:55145167-55145186 Msa0363060:intron 25.0%
! CAAACTAAAATTCATCTTTG+GGG + chr3_1:55145219-55145238 None:intergenic 25.0%
! CACTGTTAAGGAAAAAAAAA+GGG + chr3_1:55145421-55145440 None:intergenic 25.0%
! ACACTGTTAAGGAAAAAAAA+AGG + chr3_1:55145422-55145441 None:intergenic 25.0%
! TATCAAGATTAACACTGTTA+AGG + chr3_1:55145433-55145452 None:intergenic 25.0%
ATTAACAGAACAAGAGTGAT+TGG + chr3_1:55140086-55140105 None:intergenic 30.0%
GAATGTTGGAAAACATGTTA+GGG + chr3_1:55140198-55140217 None:intergenic 30.0%
AGAATGTTGGAAAACATGTT+AGG + chr3_1:55140199-55140218 None:intergenic 30.0%
!! ATTCCTTCTAAAATTCCTGA+AGG - chr3_1:55140321-55140340 Msa0363060:three_prime_UTR 30.0%
ACTAATATAGACATGGACAT+TGG + chr3_1:55140560-55140579 None:intergenic 30.0%
! ATGAAGCACTAATATAGACA+TGG + chr3_1:55140567-55140586 None:intergenic 30.0%
ATTTATGACTGTTGAAACGA+TGG - chr3_1:55140656-55140675 Msa0363060:intron 30.0%
TTTATGACTGTTGAAACGAT+GGG - chr3_1:55140657-55140676 Msa0363060:intron 30.0%
! CTTTTTAAACCATTGGGAAT+TGG - chr3_1:55140699-55140718 Msa0363060:CDS 30.0%
!!! TTTTAAAACCCAATTCCCAA+TGG + chr3_1:55140711-55140730 None:intergenic 30.0%
!!! GAATTGGGTTTTAAAACCAT+AGG - chr3_1:55140715-55140734 Msa0363060:CDS 30.0%
!!! TTCATTATGCGTACTGATTT+TGG - chr3_1:55140761-55140780 Msa0363060:intron 30.0%
!!! TTCATTTTTTATGACATCGG+TGG - chr3_1:55140793-55140812 Msa0363060:intron 30.0%
GTGTATTAGGCTGTTATATT+GGG - chr3_1:55140848-55140867 Msa0363060:intron 30.0%
!!! TTTTGTTTTAGGAAGTTTGG+AGG - chr3_1:55140941-55140960 Msa0363060:intron 30.0%
!!! TTTGTTTTAGGAAGTTTGGA+GGG - chr3_1:55140942-55140961 Msa0363060:intron 30.0%
CTAATCACTTCTATACCAAA+TGG - chr3_1:55141106-55141125 Msa0363060:CDS 30.0%
TGGAATAGTATGATCATTGA+TGG - chr3_1:55141126-55141145 Msa0363060:CDS 30.0%
TCCAACAAAGAAAAGGATAA+GGG - chr3_1:55141188-55141207 Msa0363060:CDS 30.0%
TCAATTGGAAGATCTTGTAA+GGG - chr3_1:55141230-55141249 Msa0363060:CDS 30.0%
AATTGTTTGAACTTGGAATC+AGG - chr3_1:55141367-55141386 Msa0363060:intron 30.0%
TTATAGGATATATGTCTGGA+TGG + chr3_1:55141431-55141450 None:intergenic 30.0%
TCCAGACATATATCCTATAA+AGG - chr3_1:55141431-55141450 Msa0363060:CDS 30.0%
ATAGATCAAATCTACCTAGA+AGG + chr3_1:55141486-55141505 None:intergenic 30.0%
! TCAATTGTCACTAGTAGTTT+TGG - chr3_1:55141532-55141551 Msa0363060:intron 30.0%
TGATTGTTGTCATAACTACA+AGG - chr3_1:55141867-55141886 Msa0363060:intron 30.0%
!!! GTAGACATTGTTGGTTTTTA+AGG - chr3_1:55141897-55141916 Msa0363060:intron 30.0%
ATTATCATCGAAAGGAACAT+AGG + chr3_1:55142123-55142142 None:intergenic 30.0%
!!! TTTTTTCCCATTTTGCTAGA+AGG - chr3_1:55142143-55142162 Msa0363060:intron 30.0%
TTTGTCACTCTAATGTAAAG+AGG - chr3_1:55142238-55142257 Msa0363060:intron 30.0%
ACTTCATAATCAACCTATGA+AGG + chr3_1:55142264-55142283 None:intergenic 30.0%
!! TTAGCTCTATTGATGTACAT+TGG - chr3_1:55142326-55142345 Msa0363060:intron 30.0%
! TAGCTCTATTGATGTACATT+GGG - chr3_1:55142327-55142346 Msa0363060:intron 30.0%
TAGTGTCTGTAGTTTATTTC+TGG - chr3_1:55142379-55142398 Msa0363060:intron 30.0%
TTCCTTAAGTTTATCAACTG+CGG + chr3_1:55142470-55142489 None:intergenic 30.0%
TAAACTTAAGGAACCTATCT+TGG - chr3_1:55142477-55142496 Msa0363060:CDS 30.0%
AGATTACATCTGCATTAGTT+GGG - chr3_1:55142503-55142522 Msa0363060:CDS 30.0%
TGTGAACTTAAAAGAACACA+GGG + chr3_1:55142627-55142646 None:intergenic 30.0%
ATAATCATTTACTAGTGCAG+TGG - chr3_1:55142648-55142667 Msa0363060:intron 30.0%
TTGATCAGTTATATCCAACA+AGG + chr3_1:55142736-55142755 None:intergenic 30.0%
TGATGTGATATGTGATCAAA+TGG - chr3_1:55142798-55142817 Msa0363060:intron 30.0%
TGCAGTTAGTTATCATATCA+AGG + chr3_1:55142924-55142943 None:intergenic 30.0%
TGAACAACATCTTCAAGTAA+TGG + chr3_1:55143226-55143245 None:intergenic 30.0%
GAACAAGACGACTTTAATAT+AGG + chr3_1:55143366-55143385 None:intergenic 30.0%
TTACTAACTACTCACTTTAG+AGG + chr3_1:55143416-55143435 None:intergenic 30.0%
! AAATATAGGCTTTAGCCAAA+AGG + chr3_1:55143878-55143897 None:intergenic 30.0%
GAAGCCAATTATATACTAAC+TGG + chr3_1:55143996-55144015 None:intergenic 30.0%
ACAACCTTTGTCAATGTTTA+TGG - chr3_1:55144055-55144074 Msa0363060:intron 30.0%
CAACCTTTGTCAATGTTTAT+GGG - chr3_1:55144056-55144075 Msa0363060:intron 30.0%
!!! TTGGTTTTATTGCAAAGTAG+TGG - chr3_1:55144327-55144346 Msa0363060:CDS 30.0%
!!! TGGTTTTATTGCAAAGTAGT+GGG - chr3_1:55144328-55144347 Msa0363060:CDS 30.0%
AACTGTCACAATAAAACCAT+TGG + chr3_1:55144628-55144647 None:intergenic 30.0%
!! TTGTGACAGTTATTTTCCAA+TGG - chr3_1:55144637-55144656 Msa0363060:intron 30.0%
GCTATTCACAATAAAACCAT+TGG + chr3_1:55144656-55144675 None:intergenic 30.0%
!!! TTCGTTTTGTTATTCACTAC+AGG - chr3_1:55144752-55144771 Msa0363060:intron 30.0%
!!! TCGTTTTGTTATTCACTACA+GGG - chr3_1:55144753-55144772 Msa0363060:intron 30.0%
!! TTGTGACAGTTATTTTCCAA+TGG - chr3_1:55144637-55144656 Msa0363060:intron 30.0%
GCTATTCACAATAAAACCAT+TGG + chr3_1:55144656-55144675 None:intergenic 30.0%
!!! TTCGTTTTGTTATTCACTAC+AGG - chr3_1:55144752-55144771 Msa0363060:intron 30.0%
!!! TCGTTTTGTTATTCACTACA+GGG - chr3_1:55144753-55144772 Msa0363060:intron 30.0%
ATCAATGTGCAAGATTAATC+TGG - chr3_1:55145012-55145031 Msa0363060:intron 30.0%
AAAAAATAGTTGCACCTCAT+CGG - chr3_1:55145086-55145105 Msa0363060:intron 30.0%
!! TAATGCCTGAATTTGTTAAG+TGG + chr3_1:55145295-55145314 None:intergenic 30.0%
CAGTGAAATCGATGTAAAAT+TGG + chr3_1:55145342-55145361 None:intergenic 30.0%
AAAAAAGGGAAAATCGATGA+CGG + chr3_1:55145407-55145426 None:intergenic 30.0%
! TATTTCATGTTTTGCACATC+TGG - chr3_1:55145484-55145503 Msa0363060:intron 30.0%
!!! AACTCCCGTTTTTTATCTTT+TGG - chr3_1:55145526-55145545 Msa0363060:CDS 30.0%
CATTACAATAAGTCAGAAGA+TGG + chr3_1:55145572-55145591 None:intergenic 30.0%
CTGAAACGTGTTAGAGAAAA+TGG - chr3_1:55140055-55140074 Msa0363060:three_prime_UTR 35.0%
! CATCCTTCAGGAATTTTAGA+AGG + chr3_1:55140327-55140346 None:intergenic 35.0%
TCTGACACCCGTAATAATTT+AGG + chr3_1:55140517-55140536 None:intergenic 35.0%
GGTGTATTAGGCTGTTATAT+TGG - chr3_1:55140847-55140866 Msa0363060:intron 35.0%
! ACAAGTGTGTTAACCTTTTC+CGG - chr3_1:55140885-55140904 Msa0363060:intron 35.0%
ATAACACTAACCAAAGTGGA+AGG + chr3_1:55141035-55141054 None:intergenic 35.0%
CTCCAACAAAGAAAAGGATA+AGG - chr3_1:55141187-55141206 Msa0363060:CDS 35.0%
! TCCCTTATCCTTTTCTTTGT+TGG + chr3_1:55141192-55141211 None:intergenic 35.0%
AAAGAAAAGGATAAGGGAGT+TGG - chr3_1:55141194-55141213 Msa0363060:CDS 35.0%
GATAAGGGAGTTGGATAATT+TGG - chr3_1:55141203-55141222 Msa0363060:CDS 35.0%
CTCAATTGGAAGATCTTGTA+AGG - chr3_1:55141229-55141248 Msa0363060:CDS 35.0%
TTCCATCCATTTAACCAAGA+CGG + chr3_1:55141291-55141310 None:intergenic 35.0%
TAAATGGATGGAAATCTCCT+TGG - chr3_1:55141298-55141317 Msa0363060:intron 35.0%
TGAGTTAATTAGACTAGGAG+AGG - chr3_1:55141341-55141360 Msa0363060:intron 35.0%
GAGGAAGAATTGTTTGAACT+TGG - chr3_1:55141360-55141379 Msa0363060:intron 35.0%
TTGGAATCAGGATTAGAGAA+AGG - chr3_1:55141379-55141398 Msa0363060:intron 35.0%
TAGTCCTCATCAAACAAACT+CGG + chr3_1:55141408-55141427 None:intergenic 35.0%
GCCTTTATAGGATATATGTC+TGG + chr3_1:55141435-55141454 None:intergenic 35.0%
ATATCCTATAAAGGCAACTC+AGG - chr3_1:55141440-55141459 Msa0363060:CDS 35.0%
CTAGTGACAATTGATGTACA+TGG + chr3_1:55141526-55141545 None:intergenic 35.0%
!!! CTAGTAGTTTTGGAAGAATC+AGG - chr3_1:55141542-55141561 Msa0363060:intron 35.0%
TTGGAAGAATCAGGAAACAT+TGG - chr3_1:55141551-55141570 Msa0363060:intron 35.0%
GTGGCACTTCAATTTAATCA+TGG + chr3_1:55141641-55141660 None:intergenic 35.0%
AGTTATGCATCTCTCTAATG+TGG - chr3_1:55141700-55141719 Msa0363060:intron 35.0%
GGTAATGTTGTAGACATTGT+TGG - chr3_1:55141888-55141907 Msa0363060:intron 35.0%
!!! ACATTGTTGGTTTTTAAGGC+AGG - chr3_1:55141901-55141920 Msa0363060:intron 35.0%
! AAAGCACCTTCTAGCAAAAT+GGG + chr3_1:55142152-55142171 None:intergenic 35.0%
TATGTTAATCTCCATCGCAA+CGG + chr3_1:55142199-55142218 None:intergenic 35.0%
TAATGTAAAGAGGCCTTCAT+AGG - chr3_1:55142248-55142267 Msa0363060:intron 35.0%
TCCTTAAGTTTATCAACTGC+GGG + chr3_1:55142469-55142488 None:intergenic 35.0%
GATGTAATCTCATCCAAGAT+AGG + chr3_1:55142493-55142512 None:intergenic 35.0%
GAGATTACATCTGCATTAGT+TGG - chr3_1:55142502-55142521 Msa0363060:CDS 35.0%
!! GATATGGGCTGAATTTTACA+AGG - chr3_1:55142527-55142546 Msa0363060:intron 35.0%
!! TCTCTGGTTCTTATGTAAAC+AGG - chr3_1:55142564-55142583 Msa0363060:intron 35.0%
GTTCTTATGTAAACAGGTGA+TGG - chr3_1:55142570-55142589 Msa0363060:intron 35.0%
AGAACACAGGGAAAATCAAA+AGG + chr3_1:55142615-55142634 None:intergenic 35.0%
GTGTGAACTTAAAAGAACAC+AGG + chr3_1:55142628-55142647 None:intergenic 35.0%
TAGCTCTCACACATATAATC+AGG - chr3_1:55143032-55143051 Msa0363060:intron 35.0%
GTGTACATAGATTACATTGC+TGG - chr3_1:55143129-55143148 Msa0363060:CDS 35.0%
TGAAGATGTTGTTCAATCCA+TGG - chr3_1:55143231-55143250 Msa0363060:intron 35.0%
CAAGCTATTAAAGCTGAAGA+AGG - chr3_1:55143256-55143275 Msa0363060:intron 35.0%
CATGCATAACAACTCATTAG+TGG + chr3_1:55143468-55143487 None:intergenic 35.0%
AAGTGAATTGCTCACTTTAG+AGG - chr3_1:55143550-55143569 Msa0363060:intron 35.0%
CAGTTTGATCAAACTAGCAA+AGG + chr3_1:55143654-55143673 None:intergenic 35.0%
! GGTCCATTTTCTTATAAAGC+AGG + chr3_1:55143774-55143793 None:intergenic 35.0%
TGTTGTGTTATGCTAACTGT+TGG - chr3_1:55143831-55143850 Msa0363060:CDS 35.0%
CAACCCATAAACATTGACAA+AGG + chr3_1:55144062-55144081 None:intergenic 35.0%
TCTGTAGAAAAACATGTTCC+TGG - chr3_1:55144167-55144186 Msa0363060:intron 35.0%
! GGTTTATTTCTTGAAGAGTC+TGG - chr3_1:55144257-55144276 Msa0363060:CDS 35.0%
AGAGTTTGACAAAATCCAGA+AGG - chr3_1:55144381-55144400 Msa0363060:CDS 35.0%
!! TGCTGTCAGTTATTTTCCAA+TGG - chr3_1:55144609-55144628 Msa0363060:intron 35.0%
TGTGAATAGCTGAATTTGGT+TGG - chr3_1:55144666-55144685 Msa0363060:intron 35.0%
TGTGAATAGCTGAATTTGGT+TGG - chr3_1:55144666-55144685 Msa0363060:intron 35.0%
GACACCTTGAATACTTCAAA+CGG + chr3_1:55144963-55144982 None:intergenic 35.0%
! TTTCTGTGATTTTTCTCCAC+AGG - chr3_1:55145063-55145082 Msa0363060:intron 35.0%
! TTTGGAATATCATACTCCGT+GGG + chr3_1:55145159-55145178 None:intergenic 35.0%
! ATTTGGAATATCATACTCCG+TGG + chr3_1:55145160-55145179 None:intergenic 35.0%
GGAAAAGCCACTGAAATATT+TGG + chr3_1:55145177-55145196 None:intergenic 35.0%
! ATTCTCACGTTCTTTTTCCT+TGG - chr3_1:55145264-55145283 Msa0363060:intron 35.0%
CGATACCACTTAACAAATTC+AGG - chr3_1:55145287-55145306 Msa0363060:intron 35.0%
ATACCAAAGACATTCTTGTC+TGG + chr3_1:55145365-55145384 None:intergenic 35.0%
TGTCTTTGGTATCTTAAGCT+TGG - chr3_1:55145373-55145392 Msa0363060:intron 35.0%
ACTAATTCCACAGATGATGT+AGG - chr3_1:55145457-55145476 Msa0363060:intron 35.0%
ATATCAACCTACATCATCTG+TGG + chr3_1:55145467-55145486 None:intergenic 35.0%
CATTCAACACACACAAAAGT+AGG + chr3_1:55145597-55145616 None:intergenic 35.0%
!! GTGTAGCAGCTTTAGATAAA+CGG - chr3_1:55145620-55145639 Msa0363060:five_prime_UTR 35.0%
TGAATTGGAGTACATCCTTC+AGG + chr3_1:55140339-55140358 None:intergenic 40.0%
! CCATAGGGATTGAGTGTTTT+CGG - chr3_1:55140731-55140750 Msa0363060:intron 40.0%
! CAAGTGTGTTAACCTTTTCC+GGG - chr3_1:55140886-55140905 Msa0363060:intron 40.0%
! AAGTGTGTTAACCTTTTCCG+GGG - chr3_1:55140887-55140906 Msa0363060:intron 40.0%
CTCGTTCTCCAACAAAGAAA+AGG - chr3_1:55141181-55141200 Msa0363060:CDS 40.0%
GGATAATTTGGCAGCTCAAT+TGG - chr3_1:55141215-55141234 Msa0363060:CDS 40.0%
GAAAGAGCGGAAATTGTCTT+TGG - chr3_1:55141257-55141276 Msa0363060:CDS 40.0%
AGAGTTCCGTCTTGGTTAAA+TGG - chr3_1:55141282-55141301 Msa0363060:intron 40.0%
TTCCGTCTTGGTTAAATGGA+TGG - chr3_1:55141286-55141305 Msa0363060:intron 40.0%
! GTTTCCGAGTTTGTTTGATG+AGG - chr3_1:55141401-55141420 Msa0363060:CDS 40.0%
!! ATCAGGAAACATTGGTTCTC+AGG - chr3_1:55141559-55141578 Msa0363060:intron 40.0%
TTCATGTCTCATTGTTGCAG+TGG + chr3_1:55141660-55141679 None:intergenic 40.0%
ATCTCTCTAATGTGGCAAAC+AGG - chr3_1:55141708-55141727 Msa0363060:intron 40.0%
!! TTTGGAATGGGTCTTTTCAG+TGG - chr3_1:55141760-55141779 Msa0363060:intron 40.0%
!!! TTGTTGGTTTTTAAGGCAGG+AGG - chr3_1:55141904-55141923 Msa0363060:intron 40.0%
! CAACATTTTCCAGGCAGAAA+TGG + chr3_1:55142089-55142108 None:intergenic 40.0%
!! GAAAGCACCTTCTAGCAAAA+TGG + chr3_1:55142153-55142172 None:intergenic 40.0%
!!! TTTTGCTAGAAGGTGCTTTC+TGG - chr3_1:55142153-55142172 Msa0363060:intron 40.0%
ATTTCTTTGGTTACGAGAGC+AGG - chr3_1:55142423-55142442 Msa0363060:CDS 40.0%
GCAGGATTTCAGGAAAAAGA+AGG - chr3_1:55142441-55142460 Msa0363060:CDS 40.0%
!! ACCCGCAGTTGATAAACTTA+AGG - chr3_1:55142465-55142484 Msa0363060:CDS 40.0%
AGGGAAAATCAAAAGGAGCT+GGG + chr3_1:55142608-55142627 None:intergenic 40.0%
TCCAACTGTCCAATTTGTGA+TGG - chr3_1:55142693-55142712 Msa0363060:intron 40.0%
ACCATCACAAATTGGACAGT+TGG + chr3_1:55142697-55142716 None:intergenic 40.0%
!! ATAACAGGAAGCATCCTTGT+TGG - chr3_1:55142719-55142738 Msa0363060:intron 40.0%
!! ACTACAAAAGTACCTCCGAT+GGG + chr3_1:55142776-55142795 None:intergenic 40.0%
CAGGATCTTTGTTGAGCTTA+TGG - chr3_1:55143051-55143070 Msa0363060:intron 40.0%
CATAGATTACATTGCTGGAG+TGG - chr3_1:55143134-55143153 Msa0363060:CDS 40.0%
!! TTGGAGGCGTTTATTCTGAA+GGG - chr3_1:55143166-55143185 Msa0363060:CDS 40.0%
! GCGTTTATTCTGAAGGGTTA+TGG - chr3_1:55143172-55143191 Msa0363060:CDS 40.0%
!! AGCTTTAATAGCTTGCTCCA+TGG + chr3_1:55143251-55143270 None:intergenic 40.0%
AGGAGTCAAGTTCGTCTTTA+AGG + chr3_1:55143396-55143415 None:intergenic 40.0%
CTTGTCCCTTGAAATATGCA+CGG - chr3_1:55143578-55143597 Msa0363060:intron 40.0%
! AATCTCGTTCGTTCTCCTTT+TGG - chr3_1:55144083-55144102 Msa0363060:intron 40.0%
! ATCTCGTTCGTTCTCCTTTT+GGG - chr3_1:55144084-55144103 Msa0363060:intron 40.0%
!! GCTTTGAAAAAGCAAGACTC+CGG - chr3_1:55144192-55144211 Msa0363060:intron 40.0%
TAGTTTCTGCATGAGCAAAC+CGG + chr3_1:55144214-55144233 None:intergenic 40.0%
AACCAAGCAGACATGAGAAT+GGG + chr3_1:55144241-55144260 None:intergenic 40.0%
AAACCAAGCAGACATGAGAA+TGG + chr3_1:55144242-55144261 None:intergenic 40.0%
ATTTCTTGAAGAGTCTGGTG+AGG - chr3_1:55144262-55144281 Msa0363060:CDS 40.0%
AATCCAGAAGGAGAAACCTT+TGG - chr3_1:55144393-55144412 Msa0363060:CDS 40.0%
! TTTCTTTTCTGTGGAGGCTT+TGG + chr3_1:55144427-55144446 None:intergenic 40.0%
AGCCTCCACAGAAAAGAAAA+TGG - chr3_1:55144428-55144447 Msa0363060:CDS 40.0%
CTCCACAGAAAAGAAAATGG+CGG - chr3_1:55144431-55144450 Msa0363060:CDS 40.0%
TCCACAGAAAAGAAAATGGC+GGG - chr3_1:55144432-55144451 Msa0363060:CDS 40.0%
AGCATGTTGTTACCAGCAAA+AGG + chr3_1:55144472-55144491 None:intergenic 40.0%
CAAGAACTGCAAAAGCTTAC+CGG + chr3_1:55144580-55144599 None:intergenic 40.0%
TATTCACTACAGGGTTGTCA+TGG - chr3_1:55144762-55144781 Msa0363060:intron 40.0%
TATTCACTACAGGGTTGTCA+TGG - chr3_1:55144762-55144781 Msa0363060:intron 40.0%
! CTGTCCGTTTGAAGTATTCA+AGG - chr3_1:55144956-55144975 Msa0363060:intron 40.0%
!!! GGTGCAACTATTTTTTCCTG+TGG + chr3_1:55145082-55145101 None:intergenic 40.0%
TTGGAATATCATACTCCGTG+GGG + chr3_1:55145158-55145177 None:intergenic 40.0%
TTTGTTAAGTGGTATCGCCA+AGG + chr3_1:55145284-55145303 None:intergenic 40.0%
ACAATAAGTCAGAAGATGGC+TGG + chr3_1:55145568-55145587 None:intergenic 40.0%
ACATGTTAGGGAGAGAAACC+TGG + chr3_1:55140186-55140205 None:intergenic 45.0%
CCGAAAACACTCAATCCCTA+TGG + chr3_1:55140734-55140753 None:intergenic 45.0%
AACTATGCTCTAGTCACCGA+AGG + chr3_1:55140917-55140936 None:intergenic 45.0%
TCTGTGTATGCCTTCCACTT+TGG - chr3_1:55141022-55141041 Msa0363060:intron 45.0%
!! TGGTGCTATGTTACATTCCC+AGG - chr3_1:55141146-55141165 Msa0363060:CDS 45.0%
CTATGTTACATTCCCAGGCA+AGG - chr3_1:55141151-55141170 Msa0363060:CDS 45.0%
TTGTAAGGGATGCGAAAGAG+CGG - chr3_1:55141244-55141263 Msa0363060:CDS 45.0%
GGCGGTGAGTTAATTAGACT+AGG - chr3_1:55141336-55141355 Msa0363060:intron 45.0%
CTCACCTGAGTTGCCTTTAT+AGG + chr3_1:55141447-55141466 None:intergenic 45.0%
!! ACATTGGTTCTCAGGTCCAA+AGG - chr3_1:55141567-55141586 Msa0363060:intron 45.0%
!! CATTGGTTCTCAGGTCCAAA+GGG - chr3_1:55141568-55141587 Msa0363060:intron 45.0%
! ATTGGTTCTCAGGTCCAAAG+GGG - chr3_1:55141569-55141588 Msa0363060:intron 45.0%
! CGAGCATATTTTACCCCCTT+TGG + chr3_1:55141586-55141605 None:intergenic 45.0%
TAGTGCTGTGGCATTTGGAA+TGG - chr3_1:55141747-55141766 Msa0363060:intron 45.0%
! AGTGCTGTGGCATTTGGAAT+GGG - chr3_1:55141748-55141767 Msa0363060:intron 45.0%
! ATGGGTCTTTTCAGTGGCAA+TGG - chr3_1:55141766-55141785 Msa0363060:intron 45.0%
TTCAGTGGCAATGGAACTCT+TGG - chr3_1:55141775-55141794 Msa0363060:intron 45.0%
TCAGCATGATGTCACTAGCA+CGG + chr3_1:55141840-55141859 None:intergenic 45.0%
TCGAAAGGAACATAGGCACA+CGG + chr3_1:55142116-55142135 None:intergenic 45.0%
TCTGCATTAGTTGGGCGATA+TGG - chr3_1:55142511-55142530 Msa0363060:CDS 45.0%
CTGCATTAGTTGGGCGATAT+GGG - chr3_1:55142512-55142531 Msa0363060:CDS 45.0%
GGCAGATTACATCATCTCTC+TGG - chr3_1:55142548-55142567 Msa0363060:intron 45.0%
CAGGGAAAATCAAAAGGAGC+TGG + chr3_1:55142609-55142628 None:intergenic 45.0%
! GTGTAGTCTTTTCAGCCCAT+CGG - chr3_1:55142758-55142777 Msa0363060:intron 45.0%
!! GACTACAAAAGTACCTCCGA+TGG + chr3_1:55142777-55142796 None:intergenic 45.0%
!! CTTGGAGGCGTTTATTCTGA+AGG - chr3_1:55143165-55143184 Msa0363060:CDS 45.0%
CAGCACCGTGCATATTTCAA+GGG + chr3_1:55143586-55143605 None:intergenic 45.0%
! TCTCGTTCGTTCTCCTTTTG+GGG - chr3_1:55144085-55144104 Msa0363060:intron 45.0%
TTCAAGATGCAGTCCCCAAA+AGG + chr3_1:55144101-55144120 None:intergenic 45.0%
!!! CTTGCTTTTTCAAAGCTGCC+AGG + chr3_1:55144188-55144207 None:intergenic 45.0%
!! CGCCATTTTCTTTTCTGTGG+AGG + chr3_1:55144433-55144452 None:intergenic 45.0%
CCACAGAAAAGAAAATGGCG+GGG - chr3_1:55144433-55144452 Msa0363060:CDS 45.0%
CTGACTCAGGACAACTATAC+AGG + chr3_1:55144498-55144517 None:intergenic 45.0%
CTGTATAGTTGTCCTGAGTC+AGG - chr3_1:55144496-55144515 Msa0363060:intron 45.0%
!!! CTTTTAGCTTTGCCTGACTC+AGG + chr3_1:55144511-55144530 None:intergenic 45.0%
! AAGCTTACCGGCATTGGAAT+GGG + chr3_1:55144568-55144587 None:intergenic 45.0%
! AAAGCTTACCGGCATTGGAA+TGG + chr3_1:55144569-55144588 None:intergenic 45.0%
!! CAGGGTTGTCATGGTTCTAA+TGG - chr3_1:55144771-55144790 Msa0363060:intron 45.0%
TCATAGTCATGCTTCCGATG+AGG + chr3_1:55145103-55145122 None:intergenic 45.0%
CTGCCAGACAAGAATGTCTT+TGG - chr3_1:55145359-55145378 Msa0363060:CDS 45.0%
TAGGGAGAGAAACCTGGACA+CGG + chr3_1:55140180-55140199 None:intergenic 50.0%
TTACATTCCCAGGCAAGGCA+TGG - chr3_1:55141156-55141175 Msa0363060:CDS 50.0%
! CTTTGGAGAGAGTTCCGTCT+TGG - chr3_1:55141274-55141293 Msa0363060:intron 50.0%
GGATGGAAATCTCCTTGGCA+TGG - chr3_1:55141303-55141322 Msa0363060:intron 50.0%
GGAAATCTCCTTGGCATGGA+AGG - chr3_1:55141307-55141326 Msa0363060:intron 50.0%
TCCTTGGCATGGAAGGCTTA+AGG - chr3_1:55141314-55141333 Msa0363060:intron 50.0%
CCTTGGCATGGAAGGCTTAA+GGG - chr3_1:55141315-55141334 Msa0363060:intron 50.0%
! TTGGTTCTCAGGTCCAAAGG+GGG - chr3_1:55141570-55141589 Msa0363060:intron 50.0%
TCAGCTAGTGCTGTGGCATT+TGG - chr3_1:55141742-55141761 Msa0363060:intron 50.0%
GGCAATGGAACTCTTGGAAC+TGG - chr3_1:55141781-55141800 Msa0363060:intron 50.0%
! CACGGGCTTCAACATTTTCC+AGG + chr3_1:55142098-55142117 None:intergenic 50.0%
CGAAAGGAACATAGGCACAC+GGG + chr3_1:55142115-55142134 None:intergenic 50.0%
TGTCTGTCTTACCGTTGCGA+TGG - chr3_1:55142185-55142204 Msa0363060:intron 50.0%
GGTTACGAGAGCAGGATTTC+AGG - chr3_1:55142431-55142450 Msa0363060:CDS 50.0%
! TAGTCTTTTCAGCCCATCGG+AGG - chr3_1:55142761-55142780 Msa0363060:intron 50.0%
CCAGCACCGTGCATATTTCA+AGG + chr3_1:55143587-55143606 None:intergenic 50.0%
CCTTGAAATATGCACGGTGC+TGG - chr3_1:55143584-55143603 Msa0363060:intron 50.0%
GTCCCATTCTCATGTCTGCT+TGG - chr3_1:55144236-55144255 Msa0363060:CDS 50.0%
GCTCCAAAGGTTTCTCCTTC+TGG + chr3_1:55144399-55144418 None:intergenic 50.0%
!! CTTTTCTGTGGAGGCTTTGG+AGG + chr3_1:55144424-55144443 None:intergenic 50.0%
!! CCCCGCCATTTTCTTTTCTG+TGG + chr3_1:55144436-55144455 None:intergenic 50.0%
GTTACCAGCAAAAGGAGCCA+CGG + chr3_1:55144464-55144483 None:intergenic 50.0%
TGAACACCCCATTCCAATGC+CGG - chr3_1:55144558-55144577 Msa0363060:intron 50.0%
! AGCTTACCGGCATTGGAATG+GGG + chr3_1:55144567-55144586 None:intergenic 50.0%
CTGCAAAAGCTTACCGGCAT+TGG + chr3_1:55144574-55144593 None:intergenic 50.0%
ATCATACTCCGTGGGGACTT+CGG + chr3_1:55145151-55145170 None:intergenic 50.0%
! TGGCTTTTCCCACTAGCGAA+AGG - chr3_1:55145187-55145206 Msa0363060:intron 50.0%
GGTTGTCACCTTTCGCTAGT+GGG + chr3_1:55145198-55145217 None:intergenic 50.0%
GGTTCGCTGCTAGAAGAATG+TGG + chr3_1:55145321-55145340 None:intergenic 50.0%
AACATCTCTCCACCGTGTCC+AGG - chr3_1:55140165-55140184 Msa0363060:three_prime_UTR 55.0%
ACGAGTTCCATGCCTTGCCT+GGG + chr3_1:55141166-55141185 None:intergenic 55.0%
AACGAGTTCCATGCCTTGCC+TGG + chr3_1:55141167-55141186 None:intergenic 55.0%
CCCTTAAGCCTTCCATGCCA+AGG + chr3_1:55141318-55141337 None:intergenic 55.0%
TGGCATGGAAGGCTTAAGGG+CGG - chr3_1:55141318-55141337 Msa0363060:intron 55.0%
ACAGCACTAGCTGATGCTCG+GGG + chr3_1:55141736-55141755 None:intergenic 55.0%
CACAGCACTAGCTGATGCTC+GGG + chr3_1:55141737-55141756 None:intergenic 55.0%
CCACAGCACTAGCTGATGCT+CGG + chr3_1:55141738-55141757 None:intergenic 55.0%
CACGTGCTACCATTTCTGCC+TGG - chr3_1:55142077-55142096 Msa0363060:intron 55.0%
GCTGGAGTGGACAGATGACT+TGG - chr3_1:55143147-55143166 Msa0363060:CDS 55.0%
! GGAGTGGACAGATGACTTGG+AGG - chr3_1:55143150-55143169 Msa0363060:CDS 55.0%
!! GGCTTTGGAGGTAGCTCCAA+AGG + chr3_1:55144412-55144431 None:intergenic 55.0%
GGGTTGTCACCTTTCGCTAG+TGG + chr3_1:55145199-55145218 None:intergenic 55.0%
GGAGAGAAACCTGGACACGG+TGG + chr3_1:55140177-55140196 None:intergenic 60.0%
! CCTTTTCCGGGGAGAGCCTT+CGG - chr3_1:55140898-55140917 Msa0363060:intron 60.0%
TAGTCACCGAAGGCTCTCCC+CGG + chr3_1:55140907-55140926 None:intergenic 60.0%
CCGAGCATCAGCTAGTGCTG+TGG - chr3_1:55141735-55141754 Msa0363060:intron 60.0%
! AGCACCGTGGCTCCTTTTGC+TGG - chr3_1:55144457-55144476 Msa0363060:CDS 60.0%
AGCAAGAGCCGAAGTCCCCA+CGG - chr3_1:55145140-55145159 Msa0363060:intron 60.0%
CCGAAGGCTCTCCCCGGAAA+AGG + chr3_1:55140901-55140920 None:intergenic 65.0%
! AAAATGGCGGGGCAGCACCG+TGG - chr3_1:55144444-55144463 Msa0363060:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 55139998 55145674 55139998 ID=Msa0363060;Name=Msa0363060
chr3_1 mRNA 55139998 55145674 55139998 ID=Msa0363060-mRNA-1;Parent=Msa0363060;Name=Msa0363060-mRNA-1;_AED=0.17;_eAED=0.17;_QI=76|1|1|1|0.90|0.83|12|419|494
chr3_1 exon 55139998 55140233 55139998 ID=Msa0363060-mRNA-1:exon:10018;Parent=Msa0363060-mRNA-1
chr3_1 exon 55140255 55140587 55140255 ID=Msa0363060-mRNA-1:exon:10017;Parent=Msa0363060-mRNA-1
chr3_1 exon 55140695 55140736 55140695 ID=Msa0363060-mRNA-1:exon:10016;Parent=Msa0363060-mRNA-1
chr3_1 exon 55141093 55141289 55141093 ID=Msa0363060-mRNA-1:exon:10015;Parent=Msa0363060-mRNA-1
chr3_1 exon 55141394 55141498 55141394 ID=Msa0363060-mRNA-1:exon:10014;Parent=Msa0363060-mRNA-1
chr3_1 exon 55142395 55142533 55142395 ID=Msa0363060-mRNA-1:exon:10013;Parent=Msa0363060-mRNA-1
chr3_1 exon 55142890 55142946 55142890 ID=Msa0363060-mRNA-1:exon:10012;Parent=Msa0363060-mRNA-1
chr3_1 exon 55143087 55143227 55143087 ID=Msa0363060-mRNA-1:exon:10011;Parent=Msa0363060-mRNA-1
chr3_1 exon 55143784 55143942 55143784 ID=Msa0363060-mRNA-1:exon:10010;Parent=Msa0363060-mRNA-1
chr3_1 exon 55144211 55144504 55144211 ID=Msa0363060-mRNA-1:exon:10009;Parent=Msa0363060-mRNA-1
chr3_1 exon 55145301 55145388 55145301 ID=Msa0363060-mRNA-1:exon:10008;Parent=Msa0363060-mRNA-1
chr3_1 exon 55145486 55145674 55145486 ID=Msa0363060-mRNA-1:exon:10007;Parent=Msa0363060-mRNA-1
chr3_1 five_prime_UTR 55145599 55145674 55145599 ID=Msa0363060-mRNA-1:five_prime_utr;Parent=Msa0363060-mRNA-1
chr3_1 CDS 55145486 55145598 55145486 ID=Msa0363060-mRNA-1:cds;Parent=Msa0363060-mRNA-1
chr3_1 CDS 55145301 55145388 55145301 ID=Msa0363060-mRNA-1:cds;Parent=Msa0363060-mRNA-1
chr3_1 CDS 55144211 55144504 55144211 ID=Msa0363060-mRNA-1:cds;Parent=Msa0363060-mRNA-1
chr3_1 CDS 55143784 55143942 55143784 ID=Msa0363060-mRNA-1:cds;Parent=Msa0363060-mRNA-1
chr3_1 CDS 55143087 55143227 55143087 ID=Msa0363060-mRNA-1:cds;Parent=Msa0363060-mRNA-1
chr3_1 CDS 55142890 55142946 55142890 ID=Msa0363060-mRNA-1:cds;Parent=Msa0363060-mRNA-1
chr3_1 CDS 55142395 55142533 55142395 ID=Msa0363060-mRNA-1:cds;Parent=Msa0363060-mRNA-1
chr3_1 CDS 55141394 55141498 55141394 ID=Msa0363060-mRNA-1:cds;Parent=Msa0363060-mRNA-1
chr3_1 CDS 55141093 55141289 55141093 ID=Msa0363060-mRNA-1:cds;Parent=Msa0363060-mRNA-1
chr3_1 CDS 55140695 55140736 55140695 ID=Msa0363060-mRNA-1:cds;Parent=Msa0363060-mRNA-1
chr3_1 CDS 55140438 55140587 55140438 ID=Msa0363060-mRNA-1:cds;Parent=Msa0363060-mRNA-1
chr3_1 three_prime_UTR 55140255 55140437 55140255 ID=Msa0363060-mRNA-1:three_prime_utr;Parent=Msa0363060-mRNA-1
chr3_1 three_prime_UTR 55139998 55140233 55139998 ID=Msa0363060-mRNA-1:three_prime_utr;Parent=Msa0363060-mRNA-1
Gene Sequence

>Msa0363060

ATGGCGAAACCAATCACTCTTGTTCTGTTAATATTATTCCTTTCAATTTTACATTTCTCAAACGCTGCAGAAGAAGCTTTTGATGTTCGCAAACATCTCTCCACCGTGTCCAGGTACGGAGTTGTGAAAGACATTACTGACAAGAATTTCATTCCTTCTAAAATTCCTGAAGGATGTACTCCAATTCATTTAAATCTTGTGGCAAGGCATGGAACTCGTTCTCCAACAAAGAAAAGGATAAGGGAGTTGGATAATTTGGCAGCTCAATTGGAAGATCTTGTAAGGGATGCGAAAGAGCGGAAATTGTCTTTGGAGAGAGTTCCGTCTTGGTTAAATGGATGGAAATCTCCTTGGCATGGAAGGCTTAAGGGCGGTGAGTTAATTAGACTAGGAGAGGAAGAATTGTTTGAACTTGGAATCAGGATTAGAGAAAGGTTTCCGAGTTTGTTTGATGAGGACTACCATCCAGACATATATCCTATAAAGGCAACTCAGGTTCCCCGAGCATCAGCTAGTGCTGTGGCATTTGGAATGGGTCTTTTCAGTGGCAATGGAACTCTTGGAACTGGTAAACACAGAGCTTTTGCTGTTGCAAGTGAAAGCCGTGCTAGTGACATCATGCTGAGATTTCATGATTGTTGTCATAACTACAAGGATTTCAGGAAAAAGAAGGAACCCGCAGTTGATAAACTTAAGGAACCTATCTTGGATGAGATTACATCTGCATTAGTTGGGCGATATGGGCTGAATTTTACAAGGCAGATTACATCATCTCTCTGGTTCTTATGTAAACAGGAAGCATCCTTGTTGGATATAACTGATCAAGCGTGTAGTCTTTTCAGCCCATCGGAGATTACATTGCTGGAGTGGACAGATGACTTGGAGGCGTTTATTCTGAAGGGTTATGGTAAATCACTAAATTATAGAATGGGGATGCCATTACTTGAAGATGTTGTTCAATCCATGGAGCAAGCTATTAAAGCTGAAGAAGAAAAACATGTTCCTGGCAGCTTTGAAAAAGCAAGACTCCGGTTTGCTCATGCAGAAACTATAGTCCCATTCTCATGTCTGCTTGGTTTATTTCTTGAAGAGTCTGAGTTTGACAAAATCCAGAAGGAGAAACCTTTGGAGCTACCTCCAAAGCCTCCACAGAAAAGAAAATGGCGGGGCAGCACCGTGGCTCCTTTTGCTGGTAACAACATGCTGCTCCTGTATAGTTGTCCTGAGTCAGGCAAAGCTAAAAGCAAGCACTTCGTGCAAGTGCTGCATAATGAACACCCCATTCCAATGCCGGGTTGTCATGGTTCTGATTTCTGTCCGTTTGAAGTATTCAAGGAAAAAATAGTTGCACCTCATCGGAAGCATGACTATGATACAGTTTGTAATGCAAAGCAAGAGCCGAAGTCCCCACGGAGTATGATATTCCAAATATTTCAGTGGCTTTTCCCACTAGCGAAAGGTGACAACCCCAAAGATGAATTTTAG

Protein sequence

>Msa0363060

MAKPITLVLLILFLSILHFSNAAEEAFDVRKHLSTVSRYGVVKDITDKNFIPSKIPEGCTPIHLNLVARHGTRSPTKKRIRELDNLAAQLEDLVRDAKERKLSLERVPSWLNGWKSPWHGRLKGGELIRLGEEELFELGIRIRERFPSLFDEDYHPDIYPIKATQVPRASASAVAFGMGLFSGNGTLGTGKHRAFAVASESRASDIMLRFHDCCHNYKDFRKKKEPAVDKLKEPILDEITSALVGRYGLNFTRQITSSLWFLCKQEASLLDITDQACSLFSPSEITLLEWTDDLEAFILKGYGKSLNYRMGMPLLEDVVQSMEQAIKAEEEKHVPGSFEKARLRFAHAETIVPFSCLLGLFLEESEFDKIQKEKPLELPPKPPQKRKWRGSTVAPFAGNNMLLLYSCPESGKAKSKHFVQVLHNEHPIPMPGCHGSDFCPFEVFKEKIVAPHRKHDYDTVCNAKQEPKSPRSMIFQIFQWLFPLAKGDNPKDEF*