AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1246690

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1246690 MtrunA17_Chr4g0071911 99.747 396 1 0 1 396 1 396 0.0 823
Msa1246690 MtrunA17_Chr2g0298501 78.173 394 83 3 1 393 1 392 0.0 640
Msa1246690 MtrunA17_Chr2g0298511 68.262 397 108 6 1 393 1 383 0.0 543
Msa1246690 MtrunA17_Chr1g0148241 63.472 386 135 2 14 393 13 398 0.0 525
Msa1246690 MtrunA17_Chr3g0138871 59.783 368 143 4 27 390 10 376 2.09e-172 486
Msa1246690 MtrunA17_Chr1g0151841 41.667 312 156 7 83 390 83 372 4.37e-76 240
Msa1246690 MtrunA17_Chr8g0341461 38.941 321 170 6 72 387 107 406 1.26e-70 227
Msa1246690 MtrunA17_Chr1g0209531 35.606 396 193 9 32 394 33 399 7.25e-70 225
Msa1246690 MtrunA17_Chr2g0276861 41.667 288 147 3 104 389 165 433 8.03e-70 226
Msa1246690 MtrunA17_Chr5g0423131 38.739 333 166 7 63 387 81 383 1.75e-68 221
Msa1246690 MtrunA17_Chr6g0484141 36.905 336 184 6 54 385 99 410 6.86e-66 215
Msa1246690 MtrunA17_Chr5g0394961 39.172 314 165 5 76 385 121 412 1.12e-64 212
Msa1246690 MtrunA17_Chr8g0384601 38.141 312 156 10 105 387 53 356 8.22e-61 200
Msa1246690 MtrunA17_Chr3g0136091 37.061 313 155 6 76 385 111 384 2.48e-60 200
Msa1246690 MtrunA17_Chr2g0289021 36.928 306 157 11 108 385 62 359 1.94e-56 189
Msa1246690 MtrunA17_Chr4g0073871 41.593 226 110 3 163 387 10 214 9.82e-55 180
Msa1246690 MtrunA17_Chr5g0394981 41.071 224 110 3 163 385 3 205 5.51e-52 172
Msa1246690 MtrunA17_Chr1g0170231 34.106 302 153 7 106 387 62 337 1.16e-45 160
Msa1246690 MtrunA17_Chr1g0170151 30.376 372 195 11 35 385 6 334 4.08e-39 143
Msa1246690 MtrunA17_Chr3g0137661 31.429 350 205 12 51 387 42 369 5.58e-39 143
Msa1246690 MtrunA17_Chr2g0322161 30.519 308 157 10 108 385 78 358 6.72e-37 137
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1246690 AT2G19160.2 67.342 395 124 5 1 393 1 392 0.0 573
Msa1246690 AT2G19160.1 67.342 395 124 5 1 393 1 392 0.0 573
Msa1246690 AT4G30060.2 67.424 396 123 5 1 392 1 394 0.0 568
Msa1246690 AT4G30060.1 67.424 396 123 5 1 392 1 394 0.0 568
Msa1246690 AT5G57270.3 65.782 377 123 5 22 393 10 385 0.0 528
Msa1246690 AT5G57270.1 65.782 377 123 5 22 393 10 385 0.0 528
Msa1246690 AT5G57270.4 65.782 377 123 5 22 393 10 385 0.0 528
Msa1246690 AT5G57270.5 65.782 377 123 5 22 393 10 385 0.0 528
Msa1246690 AT5G57270.2 65.782 377 123 5 22 393 10 385 0.0 528
Msa1246690 AT4G25870.1 60.465 387 147 6 12 393 1 386 0.0 519
Msa1246690 AT4G31350.4 63.271 373 135 2 21 393 4 374 7.03e-176 495
Msa1246690 AT4G31350.1 63.271 373 135 2 21 393 4 374 7.03e-176 495
Msa1246690 AT4G31350.2 63.271 373 135 2 21 393 4 374 7.03e-176 495
Msa1246690 AT4G31350.3 62.735 373 132 3 21 393 4 369 7.10e-171 482
Msa1246690 AT5G25970.1 43.816 283 135 4 108 387 119 380 1.26e-75 240
Msa1246690 AT5G25970.2 43.816 283 135 4 108 387 119 380 1.26e-75 240
Msa1246690 AT5G25970.3 43.816 283 135 4 108 387 119 380 1.26e-75 240
Msa1246690 AT1G73810.1 41.745 321 154 6 74 387 117 411 1.87e-75 240
Msa1246690 AT5G11730.1 43.463 283 136 5 108 387 118 379 1.18e-72 232
Msa1246690 AT1G10280.1 41.026 312 156 7 83 389 119 407 1.20e-70 228
Msa1246690 AT5G16170.1 42.908 282 144 3 108 387 136 402 2.80e-70 227
Msa1246690 AT3G21310.1 39.088 307 164 5 83 387 91 376 6.10e-70 225
Msa1246690 AT3G21310.3 39.088 307 164 5 83 387 91 376 6.10e-70 225
Msa1246690 AT1G68390.1 38.750 320 165 7 75 387 106 401 5.05e-69 223
Msa1246690 AT1G51770.1 42.049 283 140 4 108 387 124 385 6.81e-69 223
Msa1246690 AT1G10880.1 39.159 309 160 7 83 387 95 379 3.14e-65 213
Msa1246690 AT5G14550.3 37.778 315 159 9 101 386 58 364 2.41e-63 207
Msa1246690 AT5G14550.1 37.778 315 159 9 101 386 58 364 3.23e-63 207
Msa1246690 AT1G68380.1 38.811 286 149 6 108 389 124 387 8.75e-60 199
Msa1246690 AT5G14550.2 41.418 268 129 8 101 349 58 316 7.32e-59 195
Msa1246690 AT5G14550.4 37.954 303 148 10 101 386 58 337 1.43e-55 187
Msa1246690 AT1G62305.1 36.482 307 159 10 106 385 67 364 4.43e-55 186
Msa1246690 AT1G51770.2 37.809 283 125 5 108 387 124 358 1.98e-53 182
Msa1246690 AT1G11940.1 35.161 310 160 11 106 385 72 370 2.27e-53 182
Msa1246690 AT3G52060.1 33.103 290 158 7 108 387 75 338 4.91e-49 169
Msa1246690 AT5G25330.1 35.593 295 154 11 108 387 81 354 1.38e-46 164
Msa1246690 AT1G62305.3 35.357 280 137 7 106 366 67 321 3.58e-46 161
Msa1246690 AT5G22070.1 33.016 315 149 12 106 387 69 354 6.33e-42 151
Msa1246690 AT1G11940.2 41.899 179 95 4 106 278 72 247 3.56e-40 144
Msa1246690 AT1G62305.2 31.596 307 150 11 106 385 67 340 1.76e-39 144
Msa1246690 AT4G32290.1 33.677 291 170 9 108 387 93 371 1.45e-36 137
Msa1246690 AT3G21310.2 47.059 136 70 1 108 241 115 250 7.59e-36 132

Find 155 sgRNAs with CRISPR-Local

Find 508 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCCTGCCGGCCGCATATTT+TGG 0.032461 8_2:+38505487 Msa1246690:three_prime_UTR
ATCTTCTCTTATTAGCTTTA+AGG 0.068909 8_2:+38501977 Msa1246690:intron
ATATTTAACATGGTAAATTT+TGG 0.112275 8_2:+38505644 Msa1246690:three_prime_UTR
ATTGAATTGAATTAAATTTC+TGG 0.142756 8_2:-38498722 None:intergenic
ACCTGTATTACTCAAAATTT+CGG 0.191925 8_2:+38502943 Msa1246690:CDS
GTCAGATAACTTGTTGCTTT+TGG 0.194550 8_2:+38505402 Msa1246690:three_prime_UTR
TCATGAGCCCTATATGATTT+TGG 0.196809 8_2:-38504074 None:intergenic
AGTCCAAGGTGTTGAATAAT+TGG 0.203942 8_2:-38505345 None:intergenic
TGAATTAAATTTCTGGTGTT+TGG 0.219965 8_2:-38498715 None:intergenic
CCTGTATTACTCAAAATTTC+GGG 0.228123 8_2:+38502944 Msa1246690:CDS
TGCATCGCGTGTTGTGATTA+AGG 0.252817 8_2:+38499619 Msa1246690:CDS
AACTCTGTTTGTTGGTGTTT+GGG 0.264082 8_2:-38498677 None:intergenic
GAAAGGAGGTTAACGATATA+AGG 0.282463 8_2:+38505551 Msa1246690:three_prime_UTR
AGCTAGTTTGATCGATTCTT+TGG 0.297182 8_2:+38505380 Msa1246690:three_prime_UTR
GGACCGAAAAGAATTGTTTC+TGG 0.297694 8_2:+38499301 Msa1246690:five_prime_UTR
TCATCGGTGTATTCTCTTGC+AGG 0.305952 8_2:-38499590 None:intergenic
AAAACAAAGTGCTGGTTATC+AGG 0.312813 8_2:-38501665 None:intergenic
AACAACTTGTCCAGTGTTTC+AGG 0.313763 8_2:-38505311 None:intergenic
TCGGACAAAGATTGGCGTTT+AGG 0.323123 8_2:+38499365 Msa1246690:CDS
CGATATAAGGTTGCTTCCTC+GGG 0.327563 8_2:+38505564 Msa1246690:three_prime_UTR
TTGACTGGTCCGAAAGAAAA+TGG 0.328351 8_2:+38504048 Msa1246690:CDS
AAACTCTGTTTGTTGGTGTT+TGG 0.328816 8_2:-38498678 None:intergenic
CAAAAGGTAAGCAGCATATA+TGG 0.335007 8_2:-38505793 None:intergenic
TTACTTGCCAACCTTCTTCC+AGG 0.340675 8_2:+38503893 Msa1246690:CDS
GAATTAAATTTCTGGTGTTT+GGG 0.341513 8_2:-38498714 None:intergenic
AAGTCTTTCACCTCAACTTC+AGG 0.344606 8_2:-38502044 None:intergenic
CTTATTAGCTTTAAGGATCC+TGG 0.362945 8_2:+38501984 Msa1246690:intron
AAGATCAAAACTCTGTTTGT+TGG 0.375767 8_2:-38498685 None:intergenic
AATCCACATTGGCTTCTTCA+TGG 0.376074 8_2:-38499435 None:intergenic
CTTAATACCACAGCCTGGTT+TGG 0.380386 8_2:+38503842 Msa1246690:intron
GAGTGAATTTCCTAGCAAAT+AGG 0.380561 8_2:-38505289 None:intergenic
GTTGCTTCCTCGGGGATTGT+TGG 0.390519 8_2:+38505573 Msa1246690:three_prime_UTR
TGATGCAGAGAGACGGATAT+TGG 0.394586 8_2:+38501625 Msa1246690:CDS
ACAGGCACTGTGAAAGTATT+GGG 0.396020 8_2:+38498595 Msa1246690:five_prime_UTR
AATGGCATCCAAAATCATAT+AGG 0.399439 8_2:+38504066 Msa1246690:CDS
AACATCTTTCGACGCATTCC+AGG 0.404800 8_2:+38498865 Msa1246690:five_prime_UTR
ATGGCATCCAAAATCATATA+GGG 0.407190 8_2:+38504067 Msa1246690:CDS
TGCAGATATTGCCCGGGTCT+CGG 0.411129 8_2:+38499402 Msa1246690:CDS
GTTGGCCTTGCTTGTGGAAT+GGG 0.412422 8_2:+38505249 Msa1246690:CDS
ACGATATAAGGTTGCTTCCT+CGG 0.418086 8_2:+38505563 Msa1246690:three_prime_UTR
TGAGCCGTTACTTTGTCAAC+CGG 0.425501 8_2:+38500498 Msa1246690:CDS
TGTCATATGAGAAACCAATA+TGG 0.425967 8_2:-38505428 None:intergenic
GGTGTGGGGTAAAATTTCTA+TGG 0.434211 8_2:+38501601 Msa1246690:CDS
CAAATCTTGATAATAATGAT+TGG 0.437710 8_2:-38498802 None:intergenic
TAACCTCCTTTCAATGTCTC+AGG 0.438299 8_2:-38505540 None:intergenic
CTCCCATTCCCATGCGGACC+AGG 0.439348 8_2:-38502002 None:intergenic
CAAAACTTTCTTAGTGAGAC+GGG 0.440455 8_2:-38498765 None:intergenic
ATCCTGGTCCGCATGGGAAT+GGG 0.445467 8_2:+38502000 Msa1246690:CDS
AAGTAACGGCTCACATGAAC+TGG 0.446500 8_2:-38500488 None:intergenic
ACCCAAAATATGCGGCCGGC+AGG 0.450159 8_2:-38505489 None:intergenic
GTCGCCTGGTTCCCTCCCAC+TGG 0.454872 8_2:+38499700 Msa1246690:CDS
AGATGAAGTCGGACAAAGAT+TGG 0.456290 8_2:+38499357 Msa1246690:exon
TCTAGAAGAGAAGATGTAAC+AGG 0.459145 8_2:-38499531 None:intergenic
AAAATTTCGGGCTTACTGCC+AGG 0.466717 8_2:+38502956 Msa1246690:CDS
CACATGAACTGGTTTAGACT+TGG 0.467869 8_2:-38500477 None:intergenic
GATCCTGGTCCGCATGGGAA+TGG 0.469270 8_2:+38501999 Msa1246690:CDS
TACAGGCACTGTGAAAGTAT+TGG 0.470088 8_2:+38498594 Msa1246690:five_prime_UTR
CAAGGTAAACTGGCATTGCT+AGG 0.472797 8_2:+38505513 Msa1246690:three_prime_UTR
CAGGCTGAAGAACTGCTTTG+TGG 0.473881 8_2:-38499512 None:intergenic
GCAGCATGCTGTTATAGTTA+TGG 0.473890 8_2:+38502914 Msa1246690:CDS
ATGTCGTTTGCAGGTGGTGT+GGG 0.476335 8_2:+38501586 Msa1246690:intron
TACAGAAAGAAGTGCAAAGT+TGG 0.477720 8_2:+38505231 Msa1246690:intron
TGAAATTCTCACCTGGAAGA+AGG 0.479456 8_2:-38503904 None:intergenic
AATACCACAGCCTGGTTTGG+AGG 0.479852 8_2:+38503845 Msa1246690:intron
TGAGGTGAAAGACTTTAGAA+AGG 0.485039 8_2:+38502052 Msa1246690:CDS
GAAATTCACTCCTGAAACAC+TGG 0.486818 8_2:+38505301 Msa1246690:CDS
GGGAGGACGGTGCCGAGACC+CGG 0.492209 8_2:-38499414 None:intergenic
GCCACAAAACGATTTGTGAT+TGG 0.500464 8_2:-38498645 None:intergenic
AGATTGGCGTTTAGGAAGCA+TGG 0.501553 8_2:+38499373 Msa1246690:CDS
GTGTATTCTCTTGCAGGAGC+AGG 0.502351 8_2:-38499584 None:intergenic
GCTGGTTATCAGGATCTTGA+AGG 0.502696 8_2:-38501655 None:intergenic
CTTACAAGAGGCTGACATCA+AGG 0.502998 8_2:-38505835 None:intergenic
CAATTCTTCCCCTCCAAACC+AGG 0.505839 8_2:-38503855 None:intergenic
TGTTACATCTTCTCTTCTAG+AGG 0.506276 8_2:+38499533 Msa1246690:CDS
AGTTGGCCTTGCTTGTGGAA+TGG 0.507523 8_2:+38505248 Msa1246690:CDS
ATCCTGGTGGAATTGCAAAC+TGG 0.510654 8_2:+38504012 Msa1246690:CDS
ATCCACATTGGCTTCTTCAT+GGG 0.520386 8_2:-38499434 None:intergenic
GTTGAGGCTTGATCGCCTGC+CGG 0.522938 8_2:+38505474 Msa1246690:three_prime_UTR
TGCAAAGTTGGCCTTGCTTG+TGG 0.527174 8_2:+38505243 Msa1246690:CDS
CCTTTATGGCAGGGTCATGA+AGG 0.527603 8_2:+38500428 Msa1246690:intron
TTCTTTCGGACCAGTCAACA+TGG 0.528625 8_2:-38504043 None:intergenic
TTTCCAATTATTCAACACCT+TGG 0.532514 8_2:+38505342 Msa1246690:CDS
AAACGATTTGTGATTGGTGG+TGG 0.535066 8_2:-38498639 None:intergenic
ATTATTTAATTAGATGAAGT+CGG 0.535376 8_2:+38499346 Msa1246690:exon
TGTAAATTGCAGCATTGTTG+AGG 0.537290 8_2:+38505458 Msa1246690:three_prime_UTR
ACTTCTGAATAGAGACAGTA+AGG 0.537801 8_2:-38505736 None:intergenic
ATATAGTCAAAATGATATAG+AGG 0.539449 8_2:-38501803 None:intergenic
CAAATATCAGCTATGTTGAC+TGG 0.539911 8_2:+38501846 Msa1246690:CDS
ATAGCATACCTTCTCATCAC+TGG 0.539950 8_2:-38505145 None:intergenic
GGTGATATGCAGATATTGCC+CGG 0.545094 8_2:+38499395 Msa1246690:CDS
TTTAAGGATCCTGGTCCGCA+TGG 0.546986 8_2:+38501993 Msa1246690:CDS
ATACCACAGCCTGGTTTGGA+GGG 0.547665 8_2:+38503846 Msa1246690:intron
GTTACATCTTCTCTTCTAGA+GGG 0.550311 8_2:+38499534 Msa1246690:CDS
TCAAAACTTTCTTAGTGAGA+CGG 0.552792 8_2:-38498766 None:intergenic
CCTGGCCACTGCGTATATCC+CGG 0.557559 8_2:-38500517 None:intergenic
GTAAACTGGCATTGCTAGGG+TGG 0.558244 8_2:+38505517 Msa1246690:three_prime_UTR
CAGAAAGTAAAACAAAGTGC+TGG 0.558604 8_2:-38501673 None:intergenic
GGAGGACGGTGCCGAGACCC+GGG 0.558768 8_2:-38499413 None:intergenic
AGACTTTAGAAAGGGTGCAC+AGG 0.558853 8_2:+38502061 Msa1246690:CDS
ATCGATCAAACTAGCTGAAG+GGG 0.560447 8_2:-38505373 None:intergenic
TACCACAGCCTGGTTTGGAG+GGG 0.561051 8_2:+38503847 Msa1246690:intron
CCGGGATATACGCAGTGGCC+AGG 0.561306 8_2:+38500517 Msa1246690:CDS
GGTCAGTAACCCATGTTGAC+TGG 0.562757 8_2:+38504033 Msa1246690:CDS
CACATTGGCTTCTTCATGGG+AGG 0.564327 8_2:-38499431 None:intergenic
TTCCTAGCAAATAGGTAACA+TGG 0.566551 8_2:-38505281 None:intergenic
GAGGTGAAAGACTTTAGAAA+GGG 0.567652 8_2:+38502053 Msa1246690:CDS
GAATCGATCAAACTAGCTGA+AGG 0.568750 8_2:-38505375 None:intergenic
AGCCATGTTACCTATTTGCT+AGG 0.572145 8_2:+38505279 Msa1246690:CDS
GATTGGCGTTTAGGAAGCAT+GGG 0.574416 8_2:+38499374 Msa1246690:CDS
ATTCTCACCTGGAAGAAGGT+TGG 0.577162 8_2:-38503900 None:intergenic
CATGTCGTTTGCAGGTGGTG+TGG 0.577255 8_2:+38501585 Msa1246690:intron
AATCGATCAAACTAGCTGAA+GGG 0.579333 8_2:-38505374 None:intergenic
TATTCTCTTGCAGGAGCAGG+TGG 0.582557 8_2:-38499581 None:intergenic
TTGCACCCAAAATATGCGGC+CGG 0.585382 8_2:-38505493 None:intergenic
AGGATTGTTTGATTTGTGTG+TGG 0.585528 8_2:+38499280 Msa1246690:five_prime_UTR
TTAAGGATCCTGGTCCGCAT+GGG 0.588972 8_2:+38501994 Msa1246690:CDS
TTTCGAAACAACCGGTGGTG+AGG 0.589309 8_2:-38499651 None:intergenic
CTGAAGAACTGCTTTGTGGA+GGG 0.593232 8_2:-38499508 None:intergenic
GACCAGTTTGCAATTCCACC+AGG 0.594187 8_2:-38504014 None:intergenic
TTAAACGTAAGAATCGAGAA+AGG 0.598539 8_2:-38505760 None:intergenic
TGAATCCCATTCCACAAGCA+AGG 0.603455 8_2:-38505254 None:intergenic
ACAAAACGATTTGTGATTGG+TGG 0.603835 8_2:-38498642 None:intergenic
AAGGTAAACTGGCATTGCTA+GGG 0.604250 8_2:+38505514 Msa1246690:three_prime_UTR
TTACAAGAGGCTGACATCAA+GGG 0.605516 8_2:-38505834 None:intergenic
ACGCGATGCAATCTCTTCAT+CGG 0.605620 8_2:-38499606 None:intergenic
GACGTGTACACTAACATCAA+CGG 0.607636 8_2:-38505121 None:intergenic
TCGCATGTTACCTGAAGTTG+AGG 0.610305 8_2:+38502034 Msa1246690:CDS
TTGGCTTCTTCATGGGAGGA+CGG 0.611072 8_2:-38499427 None:intergenic
CTATGGTTGATGCAGAGAGA+CGG 0.614637 8_2:+38501618 Msa1246690:CDS
CTGGTTATCAGGATCTTGAA+GGG 0.615592 8_2:-38501654 None:intergenic
CTTTATGGCAGGGTCATGAA+GGG 0.618829 8_2:+38500429 Msa1246690:intron
GGGTGGCCTGAGACATTGAA+AGG 0.619450 8_2:+38505534 Msa1246690:three_prime_UTR
TACCTTGCACCCAAAATATG+CGG 0.620200 8_2:-38505497 None:intergenic
GAATGCGTCGAAAGATGTTG+AGG 0.623192 8_2:-38498861 None:intergenic
GTGATATGCAGATATTGCCC+GGG 0.625004 8_2:+38499396 Msa1246690:CDS
GCTGAAGAACTGCTTTGTGG+AGG 0.626465 8_2:-38499509 None:intergenic
CCGAAAAGAATTGTTTCTGG+AGG 0.626875 8_2:+38499304 Msa1246690:five_prime_UTR
ACTAAGACAATAATCCACAT+TGG 0.635102 8_2:-38499446 None:intergenic
CTGAAGGGGATTCAAGTCCA+AGG 0.638147 8_2:-38505359 None:intergenic
TCTCTTCTAGAGGGTGCAAG+CGG 0.639407 8_2:+38499543 Msa1246690:CDS
TCTTTCGGACCAGTCAACAT+GGG 0.643350 8_2:-38504042 None:intergenic
TGTCGTTTGCAGGTGGTGTG+GGG 0.643747 8_2:+38501587 Msa1246690:intron
ACACGTCACCAGTGATGAGA+AGG 0.644755 8_2:+38505137 Msa1246690:CDS
CTGGTCCGCATGGGAATGGG+AGG 0.644851 8_2:+38502003 Msa1246690:CDS
CTCCCATGAAGAAGCCAATG+TGG 0.646512 8_2:+38499432 Msa1246690:CDS
GAGCCGTTACTTTGTCAACC+GGG 0.655060 8_2:+38500499 Msa1246690:CDS
CATATGAGAAACCAATATGG+AGG 0.673924 8_2:-38505425 None:intergenic
AAAACTTTCTTAGTGAGACG+GGG 0.674383 8_2:-38498764 None:intergenic
CAAGAGGCTGACATCAAGGG+AGG 0.678504 8_2:-38505831 None:intergenic
GATATAAGGTTGCTTCCTCG+GGG 0.688803 8_2:+38505565 Msa1246690:three_prime_UTR
TATCCCGGTTGACAAAGTAA+CGG 0.706790 8_2:-38500502 None:intergenic
TGGCCTGAGACATTGAAAGG+AGG 0.712177 8_2:+38505537 Msa1246690:three_prime_UTR
GTCAACCGGGATATACGCAG+TGG 0.713259 8_2:+38500512 Msa1246690:CDS
GAGTACCTCCCATTCCCATG+CGG 0.734662 8_2:-38502008 None:intergenic
CAGTCATCCAACAATCCCCG+AGG 0.749854 8_2:-38505580 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAATTGTTAATTTCTT+AGG + chr8_2:38499073-38499092 Msa1246690:intron 10.0%
!! TTATAGAATACAAATTTAAA+CGG + chr8_2:38502150-38502169 Msa1246690:intron 10.0%
!!! TTAAAAAATTCTAACTTTTT+TGG + chr8_2:38504680-38504699 Msa1246690:intron 10.0%
!!! TAAAAAATTCTAACTTTTTT+GGG + chr8_2:38504681-38504700 Msa1246690:intron 10.0%
!!! TATAAGTTTTATATTTAACA+TGG + chr8_2:38505634-38505653 Msa1246690:three_prime_UTR 10.0%
!!! AAAAAGTCTTTTAAAATTAC+AGG + chr8_2:38498577-38498596 Msa1246690:five_prime_UTR 15.0%
!! ATTGAATTGAATTAAATTTC+TGG - chr8_2:38498725-38498744 None:intergenic 15.0%
!! ATTATTTAATTAGATGAAGT+CGG + chr8_2:38499346-38499365 Msa1246690:exon 15.0%
!! GTCATAAATATATTTCAAAA+AGG - chr8_2:38499844-38499863 None:intergenic 15.0%
!! TTTATCAGTAAAAGAATAAA+TGG + chr8_2:38499922-38499941 Msa1246690:intron 15.0%
!!! ATTTTATCAGAAAACTAAAT+TGG + chr8_2:38500037-38500056 Msa1246690:intron 15.0%
!! ACATTTATGAAGATTATATT+AGG - chr8_2:38500286-38500305 None:intergenic 15.0%
!! TTTATAAAAATAAATCTACC+TGG - chr8_2:38502977-38502996 None:intergenic 15.0%
!!! CTACTATTCTTTTTTTTTTA+TGG - chr8_2:38503294-38503313 None:intergenic 15.0%
!! AATTATCTATAATCAGTTAT+AGG + chr8_2:38503775-38503794 Msa1246690:intron 15.0%
!!! AAAAAGTTGGTTTATTTATA+GGG - chr8_2:38504446-38504465 None:intergenic 15.0%
!!! ATGAATTTTTATATTTTTGG+TGG + chr8_2:38504628-38504647 Msa1246690:intron 15.0%
!!! AAAAAATTCTAACTTTTTTG+GGG + chr8_2:38504682-38504701 Msa1246690:intron 15.0%
!!! TTGTGATTGAAAATTTTATA+GGG + chr8_2:38504787-38504806 Msa1246690:intron 15.0%
!!! TGGTGTTTTATTATAAAAAA+GGG - chr8_2:38504906-38504925 None:intergenic 15.0%
!!! TTGGTGTTTTATTATAAAAA+AGG - chr8_2:38504907-38504926 None:intergenic 15.0%
!! ATCATTATAGTTATTATTTC+TGG + chr8_2:38504988-38505007 Msa1246690:intron 15.0%
!! AAAACTTATATAACCAAAAA+TGG - chr8_2:38505624-38505643 None:intergenic 15.0%
!!! ATATTTAACATGGTAAATTT+TGG + chr8_2:38505644-38505663 Msa1246690:three_prime_UTR 15.0%
!!! TATTTAACATGGTAAATTTT+GGG + chr8_2:38505645-38505664 Msa1246690:three_prime_UTR 15.0%
!!! CAAATCTTGATAATAATGAT+TGG - chr8_2:38498805-38498824 None:intergenic 20.0%
!! AAGATAGTATAGTAAAAATC+TGG - chr8_2:38498940-38498959 None:intergenic 20.0%
!!! TAAAGAAGTATTAACTTGTT+GGG + chr8_2:38499987-38500006 Msa1246690:intron 20.0%
!! TAAATTGGAATGGTTAATAA+GGG + chr8_2:38500052-38500071 Msa1246690:intron 20.0%
!! TTCAAGCAAAGTATAAATTT+CGG - chr8_2:38500103-38500122 None:intergenic 20.0%
!! TTTATACTTTGCTTGAAAAT+TGG + chr8_2:38500106-38500125 Msa1246690:intron 20.0%
!!! TTTTTTGTTGGTAATTTCAA+TGG + chr8_2:38500335-38500354 Msa1246690:intron 20.0%
!! AACTCCAAATTTACTTTATT+TGG + chr8_2:38500801-38500820 Msa1246690:intron 20.0%
!! AATTAATCAAAACATCAACT+AGG - chr8_2:38500851-38500870 None:intergenic 20.0%
!!! TGCTGATTAATTAGTTTTAT+TGG + chr8_2:38501734-38501753 Msa1246690:intron 20.0%
!! ATATAGTCAAAATGATATAG+AGG - chr8_2:38501806-38501825 None:intergenic 20.0%
!!! CTTTTCAATAAGCAATTAAT+GGG - chr8_2:38502360-38502379 None:intergenic 20.0%
!!! TCTTTTCAATAAGCAATTAA+TGG - chr8_2:38502361-38502380 None:intergenic 20.0%
!!! TTTTTAAAAAAAATTGGGGA+AGG + chr8_2:38502413-38502432 Msa1246690:intron 20.0%
!!! TTTTAAAAAAAATTGGGGAA+GGG + chr8_2:38502414-38502433 Msa1246690:intron 20.0%
!!! GGAAATTTTATTAATCAAAG+TGG + chr8_2:38502437-38502456 Msa1246690:intron 20.0%
!! GAAAATGAATCTACTAAATT+GGG - chr8_2:38502856-38502875 None:intergenic 20.0%
!! TGAAAATGAATCTACTAAAT+TGG - chr8_2:38502857-38502876 None:intergenic 20.0%
!! CAATTTCTTTAATCTCATAA+AGG + chr8_2:38503019-38503038 Msa1246690:intron 20.0%
!!! ATTTAGAGCAGAAATAAATA+TGG - chr8_2:38503053-38503072 None:intergenic 20.0%
!! GTTTATCATTTCATTTAATG+AGG + chr8_2:38503097-38503116 Msa1246690:intron 20.0%
!!! TTTTGTTACTTAAGCTTAAA+TGG + chr8_2:38503174-38503193 Msa1246690:intron 20.0%
!!! AATACATTTTACGTTTTCTA+GGG - chr8_2:38503751-38503770 None:intergenic 20.0%
!!! AAATACATTTTACGTTTTCT+AGG - chr8_2:38503752-38503771 None:intergenic 20.0%
!! ATTTATATTTCATAGCTTCA+GGG - chr8_2:38503802-38503821 None:intergenic 20.0%
!! AATTTATATTTCATAGCTTC+AGG - chr8_2:38503803-38503822 None:intergenic 20.0%
!!! AAAAATGCAATTTTGCTTTA+TGG + chr8_2:38504344-38504363 Msa1246690:intron 20.0%
!!! AAAATGCAATTTTGCTTTAT+GGG + chr8_2:38504345-38504364 Msa1246690:intron 20.0%
!!! CAAAAAGTTGGTTTATTTAT+AGG - chr8_2:38504447-38504466 None:intergenic 20.0%
!!! AAATTTTCAATCACAACTTT+TGG - chr8_2:38504783-38504802 None:intergenic 20.0%
!!! GTTGTGATTGAAAATTTTAT+AGG + chr8_2:38504786-38504805 Msa1246690:intron 20.0%
!!! GAAAAGTTGGTATATTTATA+GGG + chr8_2:38504855-38504874 Msa1246690:intron 20.0%
!!! GTTTTATTATAAAAAAGGGA+GGG - chr8_2:38504902-38504921 None:intergenic 20.0%
!!! TGTTTTATTATAAAAAAGGG+AGG - chr8_2:38504903-38504922 None:intergenic 20.0%
!! TAATGATATTACTACAGAAA+GGG - chr8_2:38504975-38504994 None:intergenic 20.0%
!! ATAATGATATTACTACAGAA+AGG - chr8_2:38504976-38504995 None:intergenic 20.0%
!! CATAACAAGAAAAAATGAAA+AGG - chr8_2:38505064-38505083 None:intergenic 20.0%
!!! TTTTTTCTTGTTATGTTTTG+CGG + chr8_2:38505069-38505088 Msa1246690:intron 20.0%
!! TTATATAACCAAAAATGGAA+GGG - chr8_2:38505619-38505638 None:intergenic 20.0%
!!! ATTTAACATGGTAAATTTTG+GGG + chr8_2:38505646-38505665 Msa1246690:three_prime_UTR 20.0%
!!! GAATTAAATTTCTGGTGTTT+GGG - chr8_2:38498717-38498736 None:intergenic 25.0%
!!! TGAATTAAATTTCTGGTGTT+TGG - chr8_2:38498718-38498737 None:intergenic 25.0%
!! GATTGAATTTAAAGTGTAAG+AGG + chr8_2:38499183-38499202 Msa1246690:intron 25.0%
!! TTTTCTGCATCAATCTATTT+AGG + chr8_2:38499260-38499279 Msa1246690:five_prime_UTR 25.0%
!!! TTTGATTTTTTCGAAACAAC+CGG - chr8_2:38499662-38499681 None:intergenic 25.0%
!!! GTAAAGAAGTATTAACTTGT+TGG + chr8_2:38499986-38500005 Msa1246690:intron 25.0%
! ATCAGAAAACTAAATTGGAA+TGG + chr8_2:38500042-38500061 Msa1246690:intron 25.0%
! CTAAATTGGAATGGTTAATA+AGG + chr8_2:38500051-38500070 Msa1246690:intron 25.0%
! AAATTGGAATGGTTAATAAG+GGG + chr8_2:38500053-38500072 Msa1246690:intron 25.0%
!!! TATCCTGAACTTTTTTTTGT+TGG + chr8_2:38500323-38500342 Msa1246690:intron 25.0%
! TTACCAACAAAAAAAAGTTC+AGG - chr8_2:38500329-38500348 None:intergenic 25.0%
! CAAGCCAAATAAAGTAAATT+TGG - chr8_2:38500808-38500827 None:intergenic 25.0%
!!! GAATTCATTGCTGATTTTTT+TGG + chr8_2:38500881-38500900 Msa1246690:intron 25.0%
!!! TAGAAAAGTTGGTAGAAAAT+AGG + chr8_2:38501220-38501239 Msa1246690:intron 25.0%
!! TTTTCTAATGGTTTCTCTAA+TGG - chr8_2:38501355-38501374 None:intergenic 25.0%
! AACCATTAGAAAAGATTTAG+AGG + chr8_2:38501362-38501381 Msa1246690:intron 25.0%
! GTTCTATCAAAGATCATATT+TGG - chr8_2:38501402-38501421 None:intergenic 25.0%
!!! ACTTTGTTTTACTTTCTGAT+AGG + chr8_2:38501678-38501697 Msa1246690:CDS 25.0%
!!! ATCTTCTCTTATTAGCTTTA+AGG + chr8_2:38501977-38501996 Msa1246690:intron 25.0%
! AACACTTATCAACTTATATG+AGG - chr8_2:38502219-38502238 None:intergenic 25.0%
! AATAAGCAATTAATGGGAAT+AGG - chr8_2:38502354-38502373 None:intergenic 25.0%
! TTTAAAAAAAATTGGGGAAG+GGG + chr8_2:38502415-38502434 Msa1246690:intron 25.0%
! AAGAAAAGTTATGGAGAAAT+AGG - chr8_2:38502614-38502633 None:intergenic 25.0%
! TAGATTGGAAAGAAAAGTTA+TGG - chr8_2:38502623-38502642 None:intergenic 25.0%
! TTGAACATAAAGTCATAGAT+TGG - chr8_2:38502638-38502657 None:intergenic 25.0%
!!! TTTTGAGTAATACAGGTAAT+CGG - chr8_2:38502940-38502959 None:intergenic 25.0%
! ACCTGTATTACTCAAAATTT+CGG + chr8_2:38502943-38502962 Msa1246690:CDS 25.0%
! TTTAATGAGGTTATATATGC+TGG + chr8_2:38503110-38503129 Msa1246690:intron 25.0%
! TTAATGAGGTTATATATGCT+GGG + chr8_2:38503111-38503130 Msa1246690:intron 25.0%
!! AAAAGTTTCAGTGCATATTT+TGG - chr8_2:38503219-38503238 None:intergenic 25.0%
!!! TATCCTTTTAGAATTTTGTG+AGG - chr8_2:38503390-38503409 None:intergenic 25.0%
!! ATTCTAAAAGGATAGCAAAA+TGG + chr8_2:38503396-38503415 Msa1246690:intron 25.0%
!! GGAGTTTCTTTTGTATTTTA+GGG - chr8_2:38503551-38503570 None:intergenic 25.0%
!! AGGAGTTTCTTTTGTATTTT+AGG - chr8_2:38503552-38503571 None:intergenic 25.0%
! AATGCATAAGTTAGATTAAC+TGG - chr8_2:38503976-38503995 None:intergenic 25.0%
!! TACTCAATATTCATTCCTTT+TGG + chr8_2:38504158-38504177 Msa1246690:intron 25.0%
! GAGTAGATTTAAATACTTGT+TGG + chr8_2:38504265-38504284 Msa1246690:intron 25.0%
! AAAACGTATTTAACCCAAAA+AGG - chr8_2:38504415-38504434 None:intergenic 25.0%
!!! TTTTGGGTTAAATACGTTTT+TGG + chr8_2:38504415-38504434 Msa1246690:intron 25.0%
!!! AGTGAAGATGGAAATTTTTT+GGG - chr8_2:38504478-38504497 None:intergenic 25.0%
!!! AAGTGAAGATGGAAATTTTT+TGG - chr8_2:38504479-38504498 None:intergenic 25.0%
! TACATACGAGTTTACTTAAA+AGG - chr8_2:38504511-38504530 None:intergenic 25.0%
!! AAAAGTCTAAAACGAAAAGT+TGG + chr8_2:38504842-38504861 Msa1246690:intron 25.0%
!!! CGAAAAGTTGGTATATTTAT+AGG + chr8_2:38504854-38504873 Msa1246690:intron 25.0%
!! AAACACCAAATCAAACTTTT+AGG + chr8_2:38504918-38504937 Msa1246690:intron 25.0%
! ATTCTCCTAAAAGTTTGATT+TGG - chr8_2:38504926-38504945 None:intergenic 25.0%
! AATTAAAAGAGACATCAAGT+TGG + chr8_2:38504943-38504962 Msa1246690:intron 25.0%
! ATTAAAAGAGACATCAAGTT+GGG + chr8_2:38504944-38504963 Msa1246690:intron 25.0%
! AATGATATTACTACAGAAAG+GGG - chr8_2:38504974-38504993 None:intergenic 25.0%
!! ATATTTTTCCCTTCCATTTT+TGG + chr8_2:38505608-38505627 Msa1246690:three_prime_UTR 25.0%
! CTTATATAACCAAAAATGGA+AGG - chr8_2:38505620-38505639 None:intergenic 25.0%
!! TTTAACATGGTAAATTTTGG+GGG + chr8_2:38505647-38505666 Msa1246690:three_prime_UTR 25.0%
AAGATCAAAACTCTGTTTGT+TGG - chr8_2:38498688-38498707 None:intergenic 30.0%
TCAAAACTTTCTTAGTGAGA+CGG - chr8_2:38498769-38498788 None:intergenic 30.0%
! TCAGTTTTTGTACCCAAATA+CGG + chr8_2:38498978-38498997 Msa1246690:intron 30.0%
! TGTATATGTTTCTGAACATG+TGG + chr8_2:38499138-38499157 Msa1246690:intron 30.0%
! GTATATGTTTCTGAACATGT+GGG + chr8_2:38499139-38499158 Msa1246690:intron 30.0%
! GTGATTATTCATTTGCTACT+AGG + chr8_2:38499161-38499180 Msa1246690:intron 30.0%
ACTAAGACAATAATCCACAT+TGG - chr8_2:38499449-38499468 None:intergenic 30.0%
!! AACTTTTTCCAAGTAAGTGT+TGG + chr8_2:38499737-38499756 Msa1246690:intron 30.0%
AAATTTCTTCCAAACCGATA+AGG - chr8_2:38499815-38499834 None:intergenic 30.0%
CATCAACTATACTACTAAAC+TGG - chr8_2:38499891-38499910 None:intergenic 30.0%
CAGTTTAGTAGTATAGTTGA+TGG + chr8_2:38499889-38499908 Msa1246690:intron 30.0%
CAAAGTATAAATTTCGGCTA+AGG - chr8_2:38500097-38500116 None:intergenic 30.0%
AGTTGTGACAATGATGTTTA+CGG + chr8_2:38500222-38500241 Msa1246690:intron 30.0%
TAATTTCAATGGCTGATACT+TGG + chr8_2:38500346-38500365 Msa1246690:intron 30.0%
TGAGTTTACATGTTCTGTTA+CGG + chr8_2:38500602-38500621 Msa1246690:intron 30.0%
!! GTAGCTTATGTTTTATTCAG+TGG + chr8_2:38500742-38500761 Msa1246690:intron 30.0%
TAATCAAAACATCAACTAGG+AGG - chr8_2:38500848-38500867 None:intergenic 30.0%
! TCTACCAACTTTTCTACTAT+AGG - chr8_2:38501216-38501235 None:intergenic 30.0%
TTGATCTACTCTTCTTACAA+CGG - chr8_2:38501286-38501305 None:intergenic 30.0%
TGTAAGAAGAGTAGATCAAA+TGG + chr8_2:38501287-38501306 Msa1246690:intron 30.0%
! GTTTCTCTAATGGTTTTCTT+AGG - chr8_2:38501345-38501364 None:intergenic 30.0%
! GACCTCTAAATCTTTTCTAA+TGG - chr8_2:38501367-38501386 None:intergenic 30.0%
AGATTTAGAGGTCAATGAAT+TGG + chr8_2:38501374-38501393 Msa1246690:intron 30.0%
TGATCTTTGATAGAACACTA+TGG + chr8_2:38501406-38501425 Msa1246690:intron 30.0%
!!! TGGTTGTTGTTGTTGTTTTT+AGG + chr8_2:38501474-38501493 Msa1246690:intron 30.0%
TTTACTTTCTGATAGGTACA+TGG + chr8_2:38501685-38501704 Msa1246690:intron 30.0%
ATCAAGCAATATTACATAGC+AGG + chr8_2:38501879-38501898 Msa1246690:intron 30.0%
TCAAGCAATATTACATAGCA+GGG + chr8_2:38501880-38501899 Msa1246690:intron 30.0%
TTAAAAAAAATTGGGGAAGG+GGG + chr8_2:38502416-38502435 Msa1246690:intron 30.0%
ATTAATCAAAGTGGCACTAA+TGG + chr8_2:38502446-38502465 Msa1246690:intron 30.0%
AGAATATCAATTCTAGTGCA+TGG + chr8_2:38502669-38502688 Msa1246690:intron 30.0%
! GTTGAGTCTTTTGTCATAAA+AGG + chr8_2:38502697-38502716 Msa1246690:intron 30.0%
CCTGTATTACTCAAAATTTC+GGG + chr8_2:38502944-38502963 Msa1246690:CDS 30.0%
TCTCTCTTTAGCATAGTATA+AGG + chr8_2:38503144-38503163 Msa1246690:intron 30.0%
! TTTTATGGCTTAGATGGTTA+AGG + chr8_2:38503636-38503655 Msa1246690:intron 30.0%
!!! TTTTGCTTTTCTAGTTTGGA+TGG - chr8_2:38503719-38503738 None:intergenic 30.0%
!!! AAGGTTTTGCTTTTCTAGTT+TGG - chr8_2:38503723-38503742 None:intergenic 30.0%
! TGATTTTAGATTGTTGATCC+TGG + chr8_2:38503996-38504015 Msa1246690:intron 30.0%
!!! TTTTGGATGCCATTTTCTTT+CGG - chr8_2:38504060-38504079 None:intergenic 30.0%
AATGGCATCCAAAATCATAT+AGG + chr8_2:38504066-38504085 Msa1246690:CDS 30.0%
ATGGCATCCAAAATCATATA+GGG + chr8_2:38504067-38504086 Msa1246690:CDS 30.0%
! TGTGTTTCTATTGATGGAAA+GGG - chr8_2:38504224-38504243 None:intergenic 30.0%
! TTGTGTTTCTATTGATGGAA+AGG - chr8_2:38504225-38504244 None:intergenic 30.0%
ATCAATAGAAACACAAGTCT+GGG + chr8_2:38504229-38504248 Msa1246690:intron 30.0%
AGTATTTAAATCTACTCCAG+TGG - chr8_2:38504262-38504281 None:intergenic 30.0%
! TATGACAGTTCATTCCTTTT+TGG + chr8_2:38504398-38504417 Msa1246690:intron 30.0%
! ATGACAGTTCATTCCTTTTT+GGG + chr8_2:38504399-38504418 Msa1246690:intron 30.0%
! AGTTGGTTTATTTATAGGGA+GGG - chr8_2:38504442-38504461 None:intergenic 30.0%
! AAGTTGGTTTATTTATAGGG+AGG - chr8_2:38504443-38504462 None:intergenic 30.0%
!!! GTGAAGATGGAAATTTTTTG+GGG - chr8_2:38504477-38504496 None:intergenic 30.0%
ATACGAGTTTACTTAAAAGG+AGG - chr8_2:38504508-38504527 None:intergenic 30.0%
ACACGAGTCAACTTAAAAAT+AGG + chr8_2:38504755-38504774 Msa1246690:intron 30.0%
CACGAGTCAACTTAAAAATA+GGG + chr8_2:38504756-38504775 Msa1246690:intron 30.0%
! AAGTCGAAGGAAAATTTTAG+AGG + chr8_2:38504815-38504834 Msa1246690:intron 30.0%
! AGTCGAAGGAAAATTTTAGA+GGG + chr8_2:38504816-38504835 Msa1246690:intron 30.0%
!! AAGTTGGTATATTTATAGGG+AGG + chr8_2:38504858-38504877 Msa1246690:intron 30.0%
! AGTTGGTATATTTATAGGGA+GGG + chr8_2:38504859-38504878 Msa1246690:intron 30.0%
! GGGAGGGTTAAAAATATTTT+TGG - chr8_2:38504886-38504905 None:intergenic 30.0%
! TTAAAAGAGACATCAAGTTG+GGG + chr8_2:38504945-38504964 Msa1246690:intron 30.0%
TTTGTTGAGAATGAATGAAC+TGG + chr8_2:38505185-38505204 Msa1246690:intron 30.0%
TTTCCAATTATTCAACACCT+TGG + chr8_2:38505342-38505361 Msa1246690:CDS 30.0%
TGTCATATGAGAAACCAATA+TGG - chr8_2:38505431-38505450 None:intergenic 30.0%
TTAAACGTAAGAATCGAGAA+AGG - chr8_2:38505763-38505782 None:intergenic 30.0%
GATAGAAAAACACTGACAAA+AGG - chr8_2:38505812-38505831 None:intergenic 30.0%
ACAAAACGATTTGTGATTGG+TGG - chr8_2:38498645-38498664 None:intergenic 35.0%
! ACCAATCACAAATCGTTTTG+TGG + chr8_2:38498644-38498663 Msa1246690:intron 35.0%
! AACTCTGTTTGTTGGTGTTT+GGG - chr8_2:38498680-38498699 None:intergenic 35.0%
! AAACTCTGTTTGTTGGTGTT+TGG - chr8_2:38498681-38498700 None:intergenic 35.0%
AAAACTTTCTTAGTGAGACG+GGG - chr8_2:38498767-38498786 None:intergenic 35.0%
CAAAACTTTCTTAGTGAGAC+GGG - chr8_2:38498768-38498787 None:intergenic 35.0%
! AAAGATTCCCTTTTTGTACC+TGG - chr8_2:38498886-38498905 None:intergenic 35.0%
TTTGTACCCAAATACGGAAA+TGG + chr8_2:38498984-38499003 Msa1246690:intron 35.0%
TTGTACCCAAATACGGAAAT+GGG + chr8_2:38498985-38499004 Msa1246690:intron 35.0%
AAAACCCCATTTCCGTATTT+GGG - chr8_2:38498993-38499012 None:intergenic 35.0%
!! AGGATTGTTTGATTTGTGTG+TGG + chr8_2:38499280-38499299 Msa1246690:five_prime_UTR 35.0%
! CCTCCAGAAACAATTCTTTT+CGG - chr8_2:38499307-38499326 None:intergenic 35.0%
TCTAGAAGAGAAGATGTAAC+AGG - chr8_2:38499534-38499553 None:intergenic 35.0%
TGTTACATCTTCTCTTCTAG+AGG + chr8_2:38499533-38499552 Msa1246690:CDS 35.0%
GTTACATCTTCTCTTCTAGA+GGG + chr8_2:38499534-38499553 Msa1246690:CDS 35.0%
! TGTCCCATAATTTTTCCAGT+GGG - chr8_2:38499718-38499737 None:intergenic 35.0%
! TTGTCCCATAATTTTTCCAG+TGG - chr8_2:38499719-38499738 None:intergenic 35.0%
TAAAGTAGCCAACACTTACT+TGG - chr8_2:38499748-38499767 None:intergenic 35.0%
TTTCTCAGTTATCGCCTTAT+CGG + chr8_2:38499798-38499817 Msa1246690:intron 35.0%
TTGGTAGAGTTTCTCAAACT+TGG + chr8_2:38500125-38500144 Msa1246690:intron 35.0%
TGGTAGAGTTTCTCAAACTT+GGG + chr8_2:38500126-38500145 Msa1246690:intron 35.0%
ACTTGGGTAATGATGTACAA+AGG + chr8_2:38500142-38500161 Msa1246690:intron 35.0%
CATAAAGGAGAAAATCTTCC+AGG - chr8_2:38500416-38500435 None:intergenic 35.0%
! CTGGAAGATTTTCTCCTTTA+TGG + chr8_2:38500414-38500433 Msa1246690:intron 35.0%
! AAGATTTTCTCCTTTATGGC+AGG + chr8_2:38500418-38500437 Msa1246690:intron 35.0%
! AGATTTTCTCCTTTATGGCA+GGG + chr8_2:38500419-38500438 Msa1246690:intron 35.0%
GTAACAAGACTATATGTACC+TGG - chr8_2:38500538-38500557 None:intergenic 35.0%
AGATTGCCAAAGCAAAACAA+GGG - chr8_2:38500671-38500690 None:intergenic 35.0%
TAGATTGCCAAAGCAAAACA+AGG - chr8_2:38500672-38500691 None:intergenic 35.0%
GGAATAAGTTTAACCTCATC+TGG + chr8_2:38500763-38500782 Msa1246690:intron 35.0%
! AAAGTACCACTTAAGCTGAA+AGG + chr8_2:38501009-38501028 Msa1246690:intron 35.0%
AACTTTCCTTTCAGCTTAAG+TGG - chr8_2:38501018-38501037 None:intergenic 35.0%
AGCTGAAAGGAAAGTTCTAT+CGG + chr8_2:38501022-38501041 Msa1246690:intron 35.0%
AGCACCTATAGTAGAAAAGT+TGG + chr8_2:38501209-38501228 Msa1246690:intron 35.0%
TGGTAGAAAATAGGCTTAGA+TGG + chr8_2:38501229-38501248 Msa1246690:intron 35.0%
GAAAATAGGCTTAGATGGTT+TGG + chr8_2:38501234-38501253 Msa1246690:intron 35.0%
AAGAAGAGTAGATCAAATGG+AGG + chr8_2:38501290-38501309 Msa1246690:intron 35.0%
! ACTAGAAAACTACTGGTTAC+TGG - chr8_2:38501543-38501562 None:intergenic 35.0%
! AGTAACCAGTAGTTTTCTAG+TGG + chr8_2:38501542-38501561 Msa1246690:intron 35.0%
!! AAAACAAAGTGCTGGTTATC+AGG - chr8_2:38501668-38501687 None:intergenic 35.0%
CAGAAAGTAAAACAAAGTGC+TGG - chr8_2:38501676-38501695 None:intergenic 35.0%
CAAATATCAGCTATGTTGAC+TGG + chr8_2:38501846-38501865 Msa1246690:CDS 35.0%
!! CTTATTAGCTTTAAGGATCC+TGG + chr8_2:38501984-38502003 Msa1246690:intron 35.0%
! TGAGGTGAAAGACTTTAGAA+AGG + chr8_2:38502052-38502071 Msa1246690:CDS 35.0%
! GAGGTGAAAGACTTTAGAAA+GGG + chr8_2:38502053-38502072 Msa1246690:CDS 35.0%
ACTGAATTCTATCTCCAACA+TGG - chr8_2:38502103-38502122 None:intergenic 35.0%
AAGTAGCTTCTACAAAAGTG+AGG + chr8_2:38502256-38502275 Msa1246690:intron 35.0%
AATTGAAAATGTTGCAACCC+TGG - chr8_2:38502393-38502412 None:intergenic 35.0%
CATTATACAACTGTCTCTGA+GGG + chr8_2:38502470-38502489 Msa1246690:intron 35.0%
ATTATACAACTGTCTCTGAG+GGG + chr8_2:38502471-38502490 Msa1246690:intron 35.0%
!! AGATTAGCCTTGTAACTTCA+AGG - chr8_2:38502511-38502530 None:intergenic 35.0%
TGTAAAATGATGCACACTTG+AGG - chr8_2:38502552-38502571 None:intergenic 35.0%
! GAAGAGTAGTGATACTGATT+GGG - chr8_2:38502789-38502808 None:intergenic 35.0%
AGAAGAGTAGTGATACTGAT+TGG - chr8_2:38502790-38502809 None:intergenic 35.0%
TTGTTCAATTTCTTCTGCAG+TGG + chr8_2:38502877-38502896 Msa1246690:intron 35.0%
!! CCCGAAATTTTGAGTAATAC+AGG - chr8_2:38502947-38502966 None:intergenic 35.0%
!! ACTTGTTTAGCTTGATGACT+AGG - chr8_2:38503079-38503098 None:intergenic 35.0%
AAAATCGTAGAGCAAAACAG+AGG - chr8_2:38503268-38503287 None:intergenic 35.0%
ACAGGTATGTAAACACATAC+AGG + chr8_2:38503340-38503359 Msa1246690:intron 35.0%
CAGGTATGTAAACACATACA+GGG + chr8_2:38503341-38503360 Msa1246690:intron 35.0%
GTGCCTCACAAAATTCTAAA+AGG + chr8_2:38503384-38503403 Msa1246690:intron 35.0%
TTAGGGAGCAGATCATATAT+GGG - chr8_2:38503534-38503553 None:intergenic 35.0%
TTTAGGGAGCAGATCATATA+TGG - chr8_2:38503535-38503554 None:intergenic 35.0%
ACATCAGTTCTATATCTCCT+AGG - chr8_2:38503581-38503600 None:intergenic 35.0%
! CATCTTATGTGCCAGTTTTA+TGG + chr8_2:38503621-38503640 Msa1246690:intron 35.0%
AACCATCTAAGCCATAAAAC+TGG - chr8_2:38503635-38503654 None:intergenic 35.0%
!! TACGTTTTCTAGGGACAAAA+AGG - chr8_2:38503742-38503761 None:intergenic 35.0%
AATTTCTTAATACCACAGCC+TGG + chr8_2:38503837-38503856 Msa1246690:intron 35.0%
! TTTTAGATTGTTGATCCTGG+TGG + chr8_2:38503999-38504018 Msa1246690:intron 35.0%
! TCATGAGCCCTATATGATTT+TGG - chr8_2:38504077-38504096 None:intergenic 35.0%
!! CGAGCTTTTGAAGAATATCA+CGG + chr8_2:38504106-38504125 Msa1246690:CDS 35.0%
! GTGTTTCTATTGATGGAAAG+GGG - chr8_2:38504223-38504242 None:intergenic 35.0%
! CAGACTTGTGTTTCTATTGA+TGG - chr8_2:38504230-38504249 None:intergenic 35.0%
CATCAATAGAAACACAAGTC+TGG + chr8_2:38504228-38504247 Msa1246690:intron 35.0%
!! CGAATGTGATTCTGGTTTAA+AGG + chr8_2:38504321-38504340 Msa1246690:intron 35.0%
TGGGGACTAAAACAAAAAGT+TGG - chr8_2:38504459-38504478 None:intergenic 35.0%
TTATAGGGACTAAAAGTCGA+AGG + chr8_2:38504802-38504821 Msa1246690:intron 35.0%
AATGAAAAGGCAATGATGAG+TGG - chr8_2:38505051-38505070 None:intergenic 35.0%
CTTCTTTCTGTAGAAACACA+AGG - chr8_2:38505223-38505242 None:intergenic 35.0%
! TACAGAAAGAAGTGCAAAGT+TGG + chr8_2:38505231-38505250 Msa1246690:intron 35.0%
TTCCTAGCAAATAGGTAACA+TGG - chr8_2:38505284-38505303 None:intergenic 35.0%
GAGTGAATTTCCTAGCAAAT+AGG - chr8_2:38505292-38505311 None:intergenic 35.0%
!! AGTCCAAGGTGTTGAATAAT+TGG - chr8_2:38505348-38505367 None:intergenic 35.0%
AATCGATCAAACTAGCTGAA+GGG - chr8_2:38505377-38505396 None:intergenic 35.0%
! AGCTAGTTTGATCGATTCTT+TGG + chr8_2:38505380-38505399 Msa1246690:three_prime_UTR 35.0%
!!! GTCAGATAACTTGTTGCTTT+TGG + chr8_2:38505402-38505421 Msa1246690:three_prime_UTR 35.0%
CATATGAGAAACCAATATGG+AGG - chr8_2:38505428-38505447 None:intergenic 35.0%
TGTAAATTGCAGCATTGTTG+AGG + chr8_2:38505458-38505477 Msa1246690:three_prime_UTR 35.0%
GAAAGGAGGTTAACGATATA+AGG + chr8_2:38505551-38505570 Msa1246690:three_prime_UTR 35.0%
ACTTCTGAATAGAGACAGTA+AGG - chr8_2:38505739-38505758 None:intergenic 35.0%
CAAAAGGTAAGCAGCATATA+TGG - chr8_2:38505796-38505815 None:intergenic 35.0%
! TACAGGCACTGTGAAAGTAT+TGG + chr8_2:38498594-38498613 Msa1246690:five_prime_UTR 40.0%
!! ACAGGCACTGTGAAAGTATT+GGG + chr8_2:38498595-38498614 Msa1246690:five_prime_UTR 40.0%
AAACGATTTGTGATTGGTGG+TGG - chr8_2:38498642-38498661 None:intergenic 40.0%
GCCACAAAACGATTTGTGAT+TGG - chr8_2:38498648-38498667 None:intergenic 40.0%
ACGCATTCCAGGTACAAAAA+GGG + chr8_2:38498876-38498895 Msa1246690:intron 40.0%
TGTACCCAAATACGGAAATG+GGG + chr8_2:38498986-38499005 Msa1246690:intron 40.0%
GAAAACCCCATTTCCGTATT+TGG - chr8_2:38498994-38499013 None:intergenic 40.0%
! AATACGGAAATGGGGTTTTC+TGG + chr8_2:38498994-38499013 Msa1246690:intron 40.0%
! ATACGGAAATGGGGTTTTCT+GGG + chr8_2:38498995-38499014 Msa1246690:intron 40.0%
GGACCGAAAAGAATTGTTTC+TGG + chr8_2:38499301-38499320 Msa1246690:five_prime_UTR 40.0%
!! CCGAAAAGAATTGTTTCTGG+AGG + chr8_2:38499304-38499323 Msa1246690:five_prime_UTR 40.0%
AGATGAAGTCGGACAAAGAT+TGG + chr8_2:38499357-38499376 Msa1246690:exon 40.0%
!! ATCCACATTGGCTTCTTCAT+GGG - chr8_2:38499437-38499456 None:intergenic 40.0%
!! AATCCACATTGGCTTCTTCA+TGG - chr8_2:38499438-38499457 None:intergenic 40.0%
!!! GATTTTTTCGAAACAACCGG+TGG - chr8_2:38499659-38499678 None:intergenic 40.0%
! CCATAATTTTTCCAGTGGGA+GGG - chr8_2:38499714-38499733 None:intergenic 40.0%
CCTCCCACTGGAAAAATTAT+GGG + chr8_2:38499712-38499731 Msa1246690:CDS 40.0%
!! AGTATTAACTTGTTGGGACC+TGG + chr8_2:38499993-38500012 Msa1246690:intron 40.0%
!! GTATTAACTTGTTGGGACCT+GGG + chr8_2:38499994-38500013 Msa1246690:intron 40.0%
GCTAAGGTTGCAACAATAAG+TGG - chr8_2:38500081-38500100 None:intergenic 40.0%
GTACAAAGGATACTGTTGCA+TGG + chr8_2:38500156-38500175 Msa1246690:intron 40.0%
TCCAACATGATTCCTGTTCT+TGG + chr8_2:38500195-38500214 Msa1246690:intron 40.0%
TCCAAGAACAGGAATCATGT+TGG - chr8_2:38500199-38500218 None:intergenic 40.0%
TCACAACTGTTTCCAAGAAC+AGG - chr8_2:38500210-38500229 None:intergenic 40.0%
TGTGACAATGATGTTTACGG+TGG + chr8_2:38500225-38500244 Msa1246690:intron 40.0%
ATGCACATTGCTAGATGAAC+AGG - chr8_2:38500390-38500409 None:intergenic 40.0%
TCTAGCAATGTGCATTTACC+TGG + chr8_2:38500395-38500414 Msa1246690:intron 40.0%
! CACATGAACTGGTTTAGACT+TGG - chr8_2:38500480-38500499 None:intergenic 40.0%
TATCCCGGTTGACAAAGTAA+CGG - chr8_2:38500505-38500524 None:intergenic 40.0%
TAGCCACATATGCAAACCAT+TGG + chr8_2:38500640-38500659 Msa1246690:intron 40.0%
! TCTCCAATGGTTTGCATATG+TGG - chr8_2:38500646-38500665 None:intergenic 40.0%
! TTTGGAGTTAAAACCCAGAC+TGG - chr8_2:38500790-38500809 None:intergenic 40.0%
GTACATCATCGTATTCAAGC+CGG + chr8_2:38500943-38500962 Msa1246690:intron 40.0%
TACATCATCGTATTCAAGCC+GGG + chr8_2:38500944-38500963 Msa1246690:intron 40.0%
AGACTAGACAGGATAGGATT+AGG + chr8_2:38501157-38501176 Msa1246690:intron 40.0%
TCTTCTTACAACGGCATCTA+CGG - chr8_2:38501277-38501296 None:intergenic 40.0%
AGGAGAGTCAGGTTAAAAGA+GGG + chr8_2:38501310-38501329 Msa1246690:intron 40.0%
!! AACCAGTAGTTTTCTAGTGG+AGG + chr8_2:38501545-38501564 Msa1246690:intron 40.0%
AACCTCCACTAGAAAACTAC+TGG - chr8_2:38501550-38501569 None:intergenic 40.0%
GGTGTGGGGTAAAATTTCTA+TGG + chr8_2:38501601-38501620 Msa1246690:CDS 40.0%
CTGGTTATCAGGATCTTGAA+GGG - chr8_2:38501657-38501676 None:intergenic 40.0%
AAGTCTTTCACCTCAACTTC+AGG - chr8_2:38502047-38502066 None:intergenic 40.0%
TAGAATCTCGAAGTCATCGT+AGG + chr8_2:38502310-38502329 Msa1246690:intron 40.0%
TTGAAAAGATTGTCCAGACC+AGG + chr8_2:38502372-38502391 Msa1246690:intron 40.0%
TGAAAAGATTGTCCAGACCA+GGG + chr8_2:38502373-38502392 Msa1246690:intron 40.0%
CCTCAGAGACAGTTGTATAA+TGG - chr8_2:38502472-38502491 None:intergenic 40.0%
CCATTATACAACTGTCTCTG+AGG + chr8_2:38502469-38502488 Msa1246690:intron 40.0%
CTCAGTACCTTGAAGTTACA+AGG + chr8_2:38502501-38502520 Msa1246690:intron 40.0%
GTCTTTCACAGTATTCCAAC+TGG + chr8_2:38502575-38502594 Msa1246690:intron 40.0%
GGAACTTCAGTTTATCCAGT+TGG - chr8_2:38502593-38502612 None:intergenic 40.0%
! TGCAGTGGTTTTCTATGAAG+CGG + chr8_2:38502892-38502911 Msa1246690:intron 40.0%
GCAGCATGCTGTTATAGTTA+TGG + chr8_2:38502914-38502933 Msa1246690:CDS 40.0%
ATGTAACGAGTAACGACTAC+AGG + chr8_2:38503322-38503341 Msa1246690:intron 40.0%
TATCTAGGTAATGATGCGCT+TGG - chr8_2:38503426-38503445 None:intergenic 40.0%
CGCATCATTACCTAGATATC+AGG + chr8_2:38503428-38503447 Msa1246690:intron 40.0%
!! TGCCAGTTTTATGGCTTAGA+TGG + chr8_2:38503630-38503649 Msa1246690:intron 40.0%
TTGGATGGAAGTTCATCTCA+GGG - chr8_2:38503704-38503723 None:intergenic 40.0%
TTTGGATGGAAGTTCATCTC+AGG - chr8_2:38503705-38503724 None:intergenic 40.0%
TGAAATTCTCACCTGGAAGA+AGG - chr8_2:38503907-38503926 None:intergenic 40.0%
TTGCAGTTGAAATTCTCACC+TGG - chr8_2:38503914-38503933 None:intergenic 40.0%
! TTGACTGGTCCGAAAGAAAA+TGG + chr8_2:38504048-38504067 Msa1246690:CDS 40.0%
!! ATTCCTTTTGGTTAGCAGCT+AGG + chr8_2:38504170-38504189 Msa1246690:intron 40.0%
TTTCCTAGCTGCTAACCAAA+AGG - chr8_2:38504176-38504195 None:intergenic 40.0%
TAAATCTACTCCAGTGGTAC+CGG - chr8_2:38504256-38504275 None:intergenic 40.0%
CTTTATGGGACAGTTAGTGT+GGG + chr8_2:38504359-38504378 Msa1246690:intron 40.0%
GGAGGAATCAAAAGTGAAGA+TGG - chr8_2:38504490-38504509 None:intergenic 40.0%
GACGTGTACACTAACATCAA+CGG - chr8_2:38505124-38505143 None:intergenic 40.0%
ATAGCATACCTTCTCATCAC+TGG - chr8_2:38505148-38505167 None:intergenic 40.0%
AGCCATGTTACCTATTTGCT+AGG + chr8_2:38505279-38505298 Msa1246690:CDS 40.0%
GAAATTCACTCCTGAAACAC+TGG + chr8_2:38505301-38505320 Msa1246690:CDS 40.0%
AACAACTTGTCCAGTGTTTC+AGG - chr8_2:38505314-38505333 None:intergenic 40.0%
ATCGATCAAACTAGCTGAAG+GGG - chr8_2:38505376-38505395 None:intergenic 40.0%
GAATCGATCAAACTAGCTGA+AGG - chr8_2:38505378-38505397 None:intergenic 40.0%
TACCTTGCACCCAAAATATG+CGG - chr8_2:38505500-38505519 None:intergenic 40.0%
!! ATTTTGGGTGCAAGGTAAAC+TGG + chr8_2:38505503-38505522 Msa1246690:three_prime_UTR 40.0%
AAGGTAAACTGGCATTGCTA+GGG + chr8_2:38505514-38505533 Msa1246690:three_prime_UTR 40.0%
TAACCTCCTTTCAATGTCTC+AGG - chr8_2:38505543-38505562 None:intergenic 40.0%
ACGATATAAGGTTGCTTCCT+CGG + chr8_2:38505563-38505582 Msa1246690:three_prime_UTR 40.0%
GAATGCGTCGAAAGATGTTG+AGG - chr8_2:38498864-38498883 None:intergenic 45.0%
AACATCTTTCGACGCATTCC+AGG + chr8_2:38498865-38498884 Msa1246690:five_prime_UTR 45.0%
GACGCATTCCAGGTACAAAA+AGG + chr8_2:38498875-38498894 Msa1246690:intron 45.0%
TCGGACAAAGATTGGCGTTT+AGG + chr8_2:38499365-38499384 Msa1246690:CDS 45.0%
AGATTGGCGTTTAGGAAGCA+TGG + chr8_2:38499373-38499392 Msa1246690:CDS 45.0%
! GATTGGCGTTTAGGAAGCAT+GGG + chr8_2:38499374-38499393 Msa1246690:CDS 45.0%
GGTGATATGCAGATATTGCC+CGG + chr8_2:38499395-38499414 Msa1246690:CDS 45.0%
GTGATATGCAGATATTGCCC+GGG + chr8_2:38499396-38499415 Msa1246690:CDS 45.0%
CTGAAGAACTGCTTTGTGGA+GGG - chr8_2:38499511-38499530 None:intergenic 45.0%
TCATCGGTGTATTCTCTTGC+AGG - chr8_2:38499593-38499612 None:intergenic 45.0%
ACGCGATGCAATCTCTTCAT+CGG - chr8_2:38499609-38499628 None:intergenic 45.0%
TGCATCGCGTGTTGTGATTA+AGG + chr8_2:38499619-38499638 Msa1246690:CDS 45.0%
!!! GGATATTTTGACCTCACCAC+CGG + chr8_2:38499640-38499659 Msa1246690:CDS 45.0%
!! GCTTTCATGTTTTTGTCGCC+TGG + chr8_2:38499686-38499705 Msa1246690:CDS 45.0%
CCCTCCCACTGGAAAAATTA+TGG + chr8_2:38499711-38499730 Msa1246690:CDS 45.0%
! CCCATAATTTTTCCAGTGGG+AGG - chr8_2:38499715-38499734 None:intergenic 45.0%
! CAGTTATCGCCTTATCGGTT+TGG + chr8_2:38499803-38499822 Msa1246690:intron 45.0%
TGAAATTCCCAAAGTCTCCC+AGG - chr8_2:38500014-38500033 None:intergenic 45.0%
CTTTATGGCAGGGTCATGAA+GGG + chr8_2:38500429-38500448 Msa1246690:intron 45.0%
AAGTAACGGCTCACATGAAC+TGG - chr8_2:38500491-38500510 None:intergenic 45.0%
! TGAGCCGTTACTTTGTCAAC+CGG + chr8_2:38500498-38500517 Msa1246690:CDS 45.0%
!! CAAAACAAGGGCATCTCCAA+TGG - chr8_2:38500659-38500678 None:intergenic 45.0%
!!! GAGATGCCCTTGTTTTGCTT+TGG + chr8_2:38500662-38500681 Msa1246690:intron 45.0%
ACTTCTCCATTTCAACCACC+CGG - chr8_2:38500965-38500984 None:intergenic 45.0%
!! TTGAAATGGAGAAGTGCCTC+AGG + chr8_2:38500970-38500989 Msa1246690:intron 45.0%
CTTATCGCACAAAACACCTG+AGG - chr8_2:38500989-38501008 None:intergenic 45.0%
ACCGGCAATGTTGTATGGTA+CGG + chr8_2:38501056-38501075 Msa1246690:intron 45.0%
TCCGTACCATACAACATTGC+CGG - chr8_2:38501060-38501079 None:intergenic 45.0%
TGTTGTATGGTACGGAGTGT+TGG + chr8_2:38501064-38501083 Msa1246690:intron 45.0%
! GTTGTATGGTACGGAGTGTT+GGG + chr8_2:38501065-38501084 Msa1246690:intron 45.0%
CGCTTACTTTACTCTCGTGT+TGG - chr8_2:38501101-38501120 None:intergenic 45.0%
CGAGAGTAAAGTAAGCGTAG+CGG + chr8_2:38501104-38501123 Msa1246690:intron 45.0%
GATGAGTGGTAAGACTAGAC+AGG + chr8_2:38501146-38501165 Msa1246690:intron 45.0%
GTGGTAAGACTAGACAGGAT+AGG + chr8_2:38501151-38501170 Msa1246690:intron 45.0%
TGACACCATTAGAGAGAGAG+TGG + chr8_2:38501182-38501201 Msa1246690:intron 45.0%
GACACCATTAGAGAGAGAGT+GGG + chr8_2:38501183-38501202 Msa1246690:intron 45.0%
ACACCATTAGAGAGAGAGTG+GGG + chr8_2:38501184-38501203 Msa1246690:intron 45.0%
CTTCTTACAACGGCATCTAC+GGG - chr8_2:38501276-38501295 None:intergenic 45.0%
AGATCAAATGGAGGAGAGTC+AGG + chr8_2:38501299-38501318 Msa1246690:intron 45.0%
GAGGAGAGTCAGGTTAAAAG+AGG + chr8_2:38501309-38501328 Msa1246690:intron 45.0%
AGTCAGGTTAAAAGAGGGTG+AGG + chr8_2:38501315-38501334 Msa1246690:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr8_2:38501455-38501474 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr8_2:38501456-38501475 None:intergenic 45.0%
ACCTGCAAACGACATGACTA+CGG - chr8_2:38501581-38501600 None:intergenic 45.0%
! CTATGGTTGATGCAGAGAGA+CGG + chr8_2:38501618-38501637 Msa1246690:CDS 45.0%
TGATGCAGAGAGACGGATAT+TGG + chr8_2:38501625-38501644 Msa1246690:CDS 45.0%
GCTGGTTATCAGGATCTTGA+AGG - chr8_2:38501658-38501677 None:intergenic 45.0%
TCGCATGTTACCTGAAGTTG+AGG + chr8_2:38502034-38502053 Msa1246690:CDS 45.0%
! AGACTTTAGAAAGGGTGCAC+AGG + chr8_2:38502061-38502080 Msa1246690:CDS 45.0%
AAAATGTTGCAACCCTGGTC+TGG - chr8_2:38502388-38502407 None:intergenic 45.0%
AAAATTTCGGGCTTACTGCC+AGG + chr8_2:38502956-38502975 Msa1246690:CDS 45.0%
GCAACATCGACCTGATATCT+AGG - chr8_2:38503441-38503460 None:intergenic 45.0%
ATATCAGGTCGATGTTGCGT+AGG + chr8_2:38503443-38503462 Msa1246690:intron 45.0%
AGAGTTCCTTGCAACGATTC+AGG + chr8_2:38503499-38503518 Msa1246690:intron 45.0%
AGAAGTCCTGAATCGTTGCA+AGG - chr8_2:38503508-38503527 None:intergenic 45.0%
CTTAATACCACAGCCTGGTT+TGG + chr8_2:38503842-38503861 Msa1246690:intron 45.0%
TTACTTGCCAACCTTCTTCC+AGG + chr8_2:38503893-38503912 Msa1246690:CDS 45.0%
ATTCTCACCTGGAAGAAGGT+TGG - chr8_2:38503903-38503922 None:intergenic 45.0%
ATCCTGGTGGAATTGCAAAC+TGG + chr8_2:38504012-38504031 Msa1246690:CDS 45.0%
TCTTTCGGACCAGTCAACAT+GGG - chr8_2:38504045-38504064 None:intergenic 45.0%
TTCTTTCGGACCAGTCAACA+TGG - chr8_2:38504046-38504065 None:intergenic 45.0%
! TAGAAACACAAGTCTGGGAC+CGG + chr8_2:38504234-38504253 Msa1246690:intron 45.0%
AGCTGAAGCGAATGTGATTC+TGG + chr8_2:38504313-38504332 Msa1246690:intron 45.0%
GCTTTATGGGACAGTTAGTG+TGG + chr8_2:38504358-38504377 Msa1246690:intron 45.0%
TGAATCCCATTCCACAAGCA+AGG - chr8_2:38505257-38505276 None:intergenic 45.0%
!!! GTTGCTTTTGGCCTCCATAT+TGG + chr8_2:38505414-38505433 Msa1246690:three_prime_UTR 45.0%
CAAGGTAAACTGGCATTGCT+AGG + chr8_2:38505513-38505532 Msa1246690:three_prime_UTR 45.0%
CGATATAAGGTTGCTTCCTC+GGG + chr8_2:38505564-38505583 Msa1246690:three_prime_UTR 45.0%
GATATAAGGTTGCTTCCTCG+GGG + chr8_2:38505565-38505584 Msa1246690:three_prime_UTR 45.0%
!! TAAAAAAAAAAAATTGAAAT+TGG - chr8_2:38499035-38499054 None:intergenic 5.0%
!!! TCAATTTTTTTAAAAAAAAT+TGG + chr8_2:38502407-38502426 Msa1246690:intron 5.0%
!!! CAATTTTTTTAAAAAAAATT+GGG + chr8_2:38502408-38502427 Msa1246690:intron 5.0%
!!! AATTTTTTTAAAAAAAATTG+GGG + chr8_2:38502409-38502428 Msa1246690:intron 5.0%
!!! AATATGAATTTTTATATTTT+TGG + chr8_2:38504625-38504644 Msa1246690:intron 5.0%
TTGGCTTCTTCATGGGAGGA+CGG - chr8_2:38499430-38499449 None:intergenic 50.0%
!! CACATTGGCTTCTTCATGGG+AGG - chr8_2:38499434-38499453 None:intergenic 50.0%
CTCCCATGAAGAAGCCAATG+TGG + chr8_2:38499432-38499451 Msa1246690:CDS 50.0%
GCTGAAGAACTGCTTTGTGG+AGG - chr8_2:38499512-38499531 None:intergenic 50.0%
CAGGCTGAAGAACTGCTTTG+TGG - chr8_2:38499515-38499534 None:intergenic 50.0%
! TCTCTTCTAGAGGGTGCAAG+CGG + chr8_2:38499543-38499562 Msa1246690:CDS 50.0%
! GGTGCAAGCGGTTTTCTGAT+TGG + chr8_2:38499555-38499574 Msa1246690:CDS 50.0%
TATTCTCTTGCAGGAGCAGG+TGG - chr8_2:38499584-38499603 None:intergenic 50.0%
GTGTATTCTCTTGCAGGAGC+AGG - chr8_2:38499587-38499606 None:intergenic 50.0%
TTTCGAAACAACCGGTGGTG+AGG - chr8_2:38499654-38499673 None:intergenic 50.0%
CCTTCATGACCCTGCCATAA+AGG - chr8_2:38500431-38500450 None:intergenic 50.0%
CCTTTATGGCAGGGTCATGA+AGG + chr8_2:38500428-38500447 Msa1246690:intron 50.0%
! GAGCCGTTACTTTGTCAACC+GGG + chr8_2:38500499-38500518 Msa1246690:CDS 50.0%
TAACCTCATCTGGTCCAGTC+TGG + chr8_2:38500773-38500792 Msa1246690:intron 50.0%
AACCTCATCTGGTCCAGTCT+GGG + chr8_2:38500774-38500793 Msa1246690:intron 50.0%
ATCATCGTATTCAAGCCGGG+TGG + chr8_2:38500947-38500966 Msa1246690:intron 50.0%
TTCAAGCCGGGTGGTTGAAA+TGG + chr8_2:38500956-38500975 Msa1246690:intron 50.0%
GTCAGACCGGCAATGTTGTA+TGG + chr8_2:38501051-38501070 Msa1246690:intron 50.0%
! AAGTAAGCGTAGCGGAGATG+AGG + chr8_2:38501112-38501131 Msa1246690:intron 50.0%
AGGATGTTGCGTTGGATGAG+TGG + chr8_2:38501132-38501151 Msa1246690:intron 50.0%
CACCATTAGAGAGAGAGTGG+GGG + chr8_2:38501185-38501204 Msa1246690:intron 50.0%
TACCCCCACTCTCTCTCTAA+TGG - chr8_2:38501190-38501209 None:intergenic 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr8_2:38501451-38501470 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr8_2:38501457-38501476 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr8_2:38501454-38501473 Msa1246690:intron 50.0%
CCTGCAAACGACATGACTAC+GGG - chr8_2:38501580-38501599 None:intergenic 50.0%
! GTAGTCATGTCGTTTGCAGG+TGG + chr8_2:38501580-38501599 Msa1246690:intron 50.0%
! ATGTCGTTTGCAGGTGGTGT+GGG + chr8_2:38501586-38501605 Msa1246690:intron 50.0%
TTTAAGGATCCTGGTCCGCA+TGG + chr8_2:38501993-38502012 Msa1246690:CDS 50.0%
TTAAGGATCCTGGTCCGCAT+GGG + chr8_2:38501994-38502013 Msa1246690:CDS 50.0%
TGTCCATGCTGAAGCCATGT+TGG + chr8_2:38502086-38502105 Msa1246690:intron 50.0%
TCTCCAACATGGCTTCAGCA+TGG - chr8_2:38502092-38502111 None:intergenic 50.0%
!! AATACCACAGCCTGGTTTGG+AGG + chr8_2:38503845-38503864 Msa1246690:intron 50.0%
!! ATACCACAGCCTGGTTTGGA+GGG + chr8_2:38503846-38503865 Msa1246690:intron 50.0%
CAATTCTTCCCCTCCAAACC+AGG - chr8_2:38503858-38503877 None:intergenic 50.0%
GACCAGTTTGCAATTCCACC+AGG - chr8_2:38504017-38504036 None:intergenic 50.0%
GGTCAGTAACCCATGTTGAC+TGG + chr8_2:38504033-38504052 Msa1246690:CDS 50.0%
ACACGTCACCAGTGATGAGA+AGG + chr8_2:38505137-38505156 Msa1246690:CDS 50.0%
!! TGCAAAGTTGGCCTTGCTTG+TGG + chr8_2:38505243-38505262 Msa1246690:CDS 50.0%
!! AGTTGGCCTTGCTTGTGGAA+TGG + chr8_2:38505248-38505267 Msa1246690:CDS 50.0%
!! GTTGGCCTTGCTTGTGGAAT+GGG + chr8_2:38505249-38505268 Msa1246690:CDS 50.0%
CTGAAGGGGATTCAAGTCCA+AGG - chr8_2:38505362-38505381 None:intergenic 50.0%
TTGCACCCAAAATATGCGGC+CGG - chr8_2:38505496-38505515 None:intergenic 50.0%
GTAAACTGGCATTGCTAGGG+TGG + chr8_2:38505517-38505536 Msa1246690:three_prime_UTR 50.0%
TGGCCTGAGACATTGAAAGG+AGG + chr8_2:38505537-38505556 Msa1246690:three_prime_UTR 50.0%
TGCAGATATTGCCCGGGTCT+CGG + chr8_2:38499402-38499421 Msa1246690:CDS 55.0%
! TTTTCCAGTGGGAGGGAACC+AGG - chr8_2:38499707-38499726 None:intergenic 55.0%
TGTTGGGACCTGGGAGACTT+TGG + chr8_2:38500003-38500022 Msa1246690:intron 55.0%
GTTGGGACCTGGGAGACTTT+GGG + chr8_2:38500004-38500023 Msa1246690:intron 55.0%
GTCAACCGGGATATACGCAG+TGG + chr8_2:38500512-38500531 Msa1246690:CDS 55.0%
AACCCAGACTGGACCAGATG+AGG - chr8_2:38500779-38500798 None:intergenic 55.0%
CTATCGGACAGCAGTCAGAC+CGG + chr8_2:38501038-38501057 Msa1246690:intron 55.0%
!! GTATGGTACGGAGTGTTGGG+CGG + chr8_2:38501068-38501087 Msa1246690:intron 55.0%
CGGAGATGAGGATGTTGCGT+TGG + chr8_2:38501124-38501143 Msa1246690:intron 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - chr8_2:38501443-38501462 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr8_2:38501442-38501461 Msa1246690:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr8_2:38501443-38501462 Msa1246690:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr8_2:38501449-38501468 Msa1246690:intron 55.0%
! CCCGTAGTCATGTCGTTTGC+AGG + chr8_2:38501577-38501596 Msa1246690:intron 55.0%
! CATGTCGTTTGCAGGTGGTG+TGG + chr8_2:38501585-38501604 Msa1246690:intron 55.0%
! TGTCGTTTGCAGGTGGTGTG+GGG + chr8_2:38501587-38501606 Msa1246690:intron 55.0%
ATCCTGGTCCGCATGGGAAT+GGG + chr8_2:38502000-38502019 Msa1246690:CDS 55.0%
GAGTACCTCCCATTCCCATG+CGG - chr8_2:38502011-38502030 None:intergenic 55.0%
! CACTTGAGGTGCTAGCTCAG+TGG - chr8_2:38502538-38502557 None:intergenic 55.0%
!! TACCACAGCCTGGTTTGGAG+GGG + chr8_2:38503847-38503866 Msa1246690:intron 55.0%
GGACAGTTAGTGTGGGACTC+TGG + chr8_2:38504366-38504385 Msa1246690:intron 55.0%
!! GGCCGCATATTTTGGGTGCA+AGG + chr8_2:38505495-38505514 Msa1246690:three_prime_UTR 55.0%
GGGTGGCCTGAGACATTGAA+AGG + chr8_2:38505534-38505553 Msa1246690:three_prime_UTR 55.0%
GTTGCTTCCTCGGGGATTGT+TGG + chr8_2:38505573-38505592 Msa1246690:three_prime_UTR 55.0%
CAGTCATCCAACAATCCCCG+AGG - chr8_2:38505583-38505602 None:intergenic 55.0%
CCTGGCCACTGCGTATATCC+CGG - chr8_2:38500520-38500539 None:intergenic 60.0%
GATCCTGGTCCGCATGGGAA+TGG + chr8_2:38501999-38502018 Msa1246690:CDS 60.0%
TTCCCCTCCAAACCAGGCTG+TGG - chr8_2:38503852-38503871 None:intergenic 60.0%
! AAGTCTGGGACCGGTACCAC+TGG + chr8_2:38504243-38504262 Msa1246690:intron 60.0%
GTTGAGGCTTGATCGCCTGC+CGG + chr8_2:38505474-38505493 Msa1246690:three_prime_UTR 60.0%
! GCCTGCCGGCCGCATATTTT+GGG + chr8_2:38505488-38505507 Msa1246690:three_prime_UTR 60.0%
ACCCAAAATATGCGGCCGGC+AGG - chr8_2:38505492-38505511 None:intergenic 60.0%
CCGGGATATACGCAGTGGCC+AGG + chr8_2:38500517-38500536 Msa1246690:CDS 65.0%
CTCCCATTCCCATGCGGACC+AGG - chr8_2:38502005-38502024 None:intergenic 65.0%
CTGGTCCGCATGGGAATGGG+AGG + chr8_2:38502003-38502022 Msa1246690:CDS 65.0%
! CGCCTGCCGGCCGCATATTT+TGG + chr8_2:38505487-38505506 Msa1246690:three_prime_UTR 65.0%
GTCGCCTGGTTCCCTCCCAC+TGG + chr8_2:38499700-38499719 Msa1246690:CDS 70.0%
! GGAGGACGGTGCCGAGACCC+GGG - chr8_2:38499416-38499435 None:intergenic 75.0%
! GGGAGGACGGTGCCGAGACC+CGG - chr8_2:38499417-38499436 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 38498576 38505848 38498576 ID=Msa1246690;Name=Msa1246690
chr8_2 mRNA 38498576 38505848 38498576 ID=Msa1246690-mRNA-1;Parent=Msa1246690;Name=Msa1246690-mRNA-1;_AED=0.10;_eAED=0.10;_QI=392|1|1|1|0.81|0.75|12|478|396
chr8_2 exon 38498576 38498653 38498576 ID=Msa1246690-mRNA-1:exon:11976;Parent=Msa1246690-mRNA-1
chr8_2 exon 38498674 38498886 38498674 ID=Msa1246690-mRNA-1:exon:11977;Parent=Msa1246690-mRNA-1
chr8_2 exon 38499258 38499748 38499258 ID=Msa1246690-mRNA-1:exon:11978;Parent=Msa1246690-mRNA-1
chr8_2 exon 38500440 38500538 38500440 ID=Msa1246690-mRNA-1:exon:11979;Parent=Msa1246690-mRNA-1
chr8_2 exon 38501599 38501699 38501599 ID=Msa1246690-mRNA-1:exon:11980;Parent=Msa1246690-mRNA-1
chr8_2 exon 38501796 38501867 38501796 ID=Msa1246690-mRNA-1:exon:11981;Parent=Msa1246690-mRNA-1
chr8_2 exon 38501992 38502082 38501992 ID=Msa1246690-mRNA-1:exon:11982;Parent=Msa1246690-mRNA-1
chr8_2 exon 38502897 38502977 38502897 ID=Msa1246690-mRNA-1:exon:11983;Parent=Msa1246690-mRNA-1
chr8_2 exon 38503855 38503914 38503855 ID=Msa1246690-mRNA-1:exon:11984;Parent=Msa1246690-mRNA-1
chr8_2 exon 38504005 38504127 38504005 ID=Msa1246690-mRNA-1:exon:11985;Parent=Msa1246690-mRNA-1
chr8_2 exon 38505120 38505158 38505120 ID=Msa1246690-mRNA-1:exon:11986;Parent=Msa1246690-mRNA-1
chr8_2 exon 38505236 38505848 38505236 ID=Msa1246690-mRNA-1:exon:11987;Parent=Msa1246690-mRNA-1
chr8_2 five_prime_UTR 38498576 38498653 38498576 ID=Msa1246690-mRNA-1:five_prime_utr;Parent=Msa1246690-mRNA-1
chr8_2 five_prime_UTR 38498674 38498886 38498674 ID=Msa1246690-mRNA-1:five_prime_utr;Parent=Msa1246690-mRNA-1
chr8_2 five_prime_UTR 38499258 38499358 38499258 ID=Msa1246690-mRNA-1:five_prime_utr;Parent=Msa1246690-mRNA-1
chr8_2 CDS 38499359 38499748 38499359 ID=Msa1246690-mRNA-1:cds;Parent=Msa1246690-mRNA-1
chr8_2 CDS 38500440 38500538 38500440 ID=Msa1246690-mRNA-1:cds;Parent=Msa1246690-mRNA-1
chr8_2 CDS 38501599 38501699 38501599 ID=Msa1246690-mRNA-1:cds;Parent=Msa1246690-mRNA-1
chr8_2 CDS 38501796 38501867 38501796 ID=Msa1246690-mRNA-1:cds;Parent=Msa1246690-mRNA-1
chr8_2 CDS 38501992 38502082 38501992 ID=Msa1246690-mRNA-1:cds;Parent=Msa1246690-mRNA-1
chr8_2 CDS 38502897 38502977 38502897 ID=Msa1246690-mRNA-1:cds;Parent=Msa1246690-mRNA-1
chr8_2 CDS 38503855 38503914 38503855 ID=Msa1246690-mRNA-1:cds;Parent=Msa1246690-mRNA-1
chr8_2 CDS 38504005 38504127 38504005 ID=Msa1246690-mRNA-1:cds;Parent=Msa1246690-mRNA-1
chr8_2 CDS 38505120 38505158 38505120 ID=Msa1246690-mRNA-1:cds;Parent=Msa1246690-mRNA-1
chr8_2 CDS 38505236 38505370 38505236 ID=Msa1246690-mRNA-1:cds;Parent=Msa1246690-mRNA-1
chr8_2 three_prime_UTR 38505371 38505848 38505371 ID=Msa1246690-mRNA-1:three_prime_utr;Parent=Msa1246690-mRNA-1
Gene Sequence

>Msa1246690

ATGAAGTCGGACAAAGATTGGCGTTTAGGAAGCATGGGTGATATGCAGATATTGCCCGGGTCTCGGCACCGTCCTCCCATGAAGAAGCCAATGTGGATTATTGTCTTAGTGTTATTTGTATGCGTATTTCTAATAATTGCTTACATGTACCCTCCACAAAGCAGTTCTTCAGCCTGTTACATCTTCTCTTCTAGAGGGTGCAAGCGGTTTTCTGATTGGCTTCCACCTGCTCCTGCAAGAGAATACACCGATGAAGAGATTGCATCGCGTGTTGTGATTAAGGATATTTTGACCTCACCACCGGTTGTTTCGAAAAAATCAAAGATTGCTTTCATGTTTTTGTCGCCTGGTTCCCTCCCACTGGAAAAATTATGGGACAACTTTTTCCAAGGTCATGAAGGGAAGTTCTCAGTTTATGTGCATGCATCCAAGTCTAAACCAGTTCATGTGAGCCGTTACTTTGTCAACCGGGATATACGCAGTGGCCAGGTGGTGTGGGGTAAAATTTCTATGGTTGATGCAGAGAGACGGATATTGGCGACTGCCCTTCAAGATCCTGATAACCAGCACTTTGTTTTACTTTCTGATAGCTGTGTGCCTCTATATCATTTTGACTATATTTACAACTATTTGATGCATACAAATATCAGCTATGTTGACTGCTTTAAGGATCCTGGTCCGCATGGGAATGGGAGGTACTCAGATCGCATGTTACCTGAAGTTGAGGTGAAAGACTTTAGAAAGGGTGCACAGTGGTTTTCTATGAAGCGGCAGCATGCTGTTATAGTTATGGCCGATTACCTGTATTACTCAAAATTTCGGGCTTACTGCCAGCCTGGTTTGGAGGGGAAGAATTGCATTGCTGATGAGCATTACTTGCCAACCTTCTTCCAGATTGTTGATCCTGGTGGAATTGCAAACTGGTCAGTAACCCATGTTGACTGGTCCGAAAGAAAATGGCATCCAAAATCATATAGGGCTCATGATGTTACATACGAGCTTTTGAAGAATATCACGTCCGTTGATGTTAGTGTACACGTCACCAGTGATGAGAAGAAAGAAGTGCAAAGTTGGCCTTGCTTGTGGAATGGGATTCAGAAGCCATGTTACCTATTTGCTAGGAAATTCACTCCTGAAACACTGGACAAGTTGTTGCATCTATTTTCCAATTATTCAACACCTTGGACTTGA
Protein sequence

>Msa1246690

MKSDKDWRLGSMGDMQILPGSRHRPPMKKPMWIIVLVLFVCVFLIIAYMYPPQSSSSACYIFSSRGCKRFSDWLPPAPAREYTDEEIASRVVIKDILTSPPVVSKKSKIAFMFLSPGSLPLEKLWDNFFQGHEGKFSVYVHASKSKPVHVSRYFVNRDIRSGQVVWGKISMVDAERRILATALQDPDNQHFVLLSDSCVPLYHFDYIYNYLMHTNISYVDCFKDPGPHGNGRYSDRMLPEVEVKDFRKGAQWFSMKRQHAVIVMADYLYYSKFRAYCQPGLEGKNCIADEHYLPTFFQIVDPGGIANWSVTHVDWSERKWHPKSYRAHDVTYELLKNITSVDVSVHVTSDEKKEVQSWPCLWNGIQKPCYLFARKFTPETLDKLLHLFSNYSTPWT*