AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1391570

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1391570 MtrunA17_Chr4g0071911 99.747 396 1 0 1 396 1 396 0.0 823
Msa1391570 MtrunA17_Chr2g0298501 78.173 394 83 3 1 393 1 392 0.0 640
Msa1391570 MtrunA17_Chr2g0298511 68.262 397 108 6 1 393 1 383 0.0 543
Msa1391570 MtrunA17_Chr1g0148241 63.472 386 135 2 14 393 13 398 0.0 525
Msa1391570 MtrunA17_Chr3g0138871 59.783 368 143 4 27 390 10 376 2.09e-172 486
Msa1391570 MtrunA17_Chr1g0151841 41.667 312 156 7 83 390 83 372 4.37e-76 240
Msa1391570 MtrunA17_Chr8g0341461 38.941 321 170 6 72 387 107 406 1.26e-70 227
Msa1391570 MtrunA17_Chr1g0209531 35.606 396 193 9 32 394 33 399 7.25e-70 225
Msa1391570 MtrunA17_Chr2g0276861 41.667 288 147 3 104 389 165 433 8.03e-70 226
Msa1391570 MtrunA17_Chr5g0423131 38.739 333 166 7 63 387 81 383 1.75e-68 221
Msa1391570 MtrunA17_Chr6g0484141 36.905 336 184 6 54 385 99 410 6.86e-66 215
Msa1391570 MtrunA17_Chr5g0394961 39.172 314 165 5 76 385 121 412 1.12e-64 212
Msa1391570 MtrunA17_Chr8g0384601 38.141 312 156 10 105 387 53 356 8.22e-61 200
Msa1391570 MtrunA17_Chr3g0136091 37.061 313 155 6 76 385 111 384 2.48e-60 200
Msa1391570 MtrunA17_Chr2g0289021 36.928 306 157 11 108 385 62 359 1.94e-56 189
Msa1391570 MtrunA17_Chr4g0073871 41.593 226 110 3 163 387 10 214 9.82e-55 180
Msa1391570 MtrunA17_Chr5g0394981 41.071 224 110 3 163 385 3 205 5.51e-52 172
Msa1391570 MtrunA17_Chr1g0170231 34.106 302 153 7 106 387 62 337 1.16e-45 160
Msa1391570 MtrunA17_Chr1g0170151 30.376 372 195 11 35 385 6 334 4.08e-39 143
Msa1391570 MtrunA17_Chr3g0137661 31.429 350 205 12 51 387 42 369 5.58e-39 143
Msa1391570 MtrunA17_Chr2g0322161 30.519 308 157 10 108 385 78 358 6.72e-37 137
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1391570 AT2G19160.2 67.342 395 124 5 1 393 1 392 0.0 573
Msa1391570 AT2G19160.1 67.342 395 124 5 1 393 1 392 0.0 573
Msa1391570 AT4G30060.2 67.424 396 123 5 1 392 1 394 0.0 568
Msa1391570 AT4G30060.1 67.424 396 123 5 1 392 1 394 0.0 568
Msa1391570 AT5G57270.3 65.782 377 123 5 22 393 10 385 0.0 528
Msa1391570 AT5G57270.1 65.782 377 123 5 22 393 10 385 0.0 528
Msa1391570 AT5G57270.4 65.782 377 123 5 22 393 10 385 0.0 528
Msa1391570 AT5G57270.5 65.782 377 123 5 22 393 10 385 0.0 528
Msa1391570 AT5G57270.2 65.782 377 123 5 22 393 10 385 0.0 528
Msa1391570 AT4G25870.1 60.465 387 147 6 12 393 1 386 0.0 519
Msa1391570 AT4G31350.4 63.271 373 135 2 21 393 4 374 7.03e-176 495
Msa1391570 AT4G31350.1 63.271 373 135 2 21 393 4 374 7.03e-176 495
Msa1391570 AT4G31350.2 63.271 373 135 2 21 393 4 374 7.03e-176 495
Msa1391570 AT4G31350.3 62.735 373 132 3 21 393 4 369 7.10e-171 482
Msa1391570 AT5G25970.1 43.816 283 135 4 108 387 119 380 1.26e-75 240
Msa1391570 AT5G25970.2 43.816 283 135 4 108 387 119 380 1.26e-75 240
Msa1391570 AT5G25970.3 43.816 283 135 4 108 387 119 380 1.26e-75 240
Msa1391570 AT1G73810.1 41.745 321 154 6 74 387 117 411 1.87e-75 240
Msa1391570 AT5G11730.1 43.463 283 136 5 108 387 118 379 1.18e-72 232
Msa1391570 AT1G10280.1 41.026 312 156 7 83 389 119 407 1.20e-70 228
Msa1391570 AT5G16170.1 42.908 282 144 3 108 387 136 402 2.80e-70 227
Msa1391570 AT3G21310.1 39.088 307 164 5 83 387 91 376 6.10e-70 225
Msa1391570 AT3G21310.3 39.088 307 164 5 83 387 91 376 6.10e-70 225
Msa1391570 AT1G68390.1 38.750 320 165 7 75 387 106 401 5.05e-69 223
Msa1391570 AT1G51770.1 42.049 283 140 4 108 387 124 385 6.81e-69 223
Msa1391570 AT1G10880.1 39.159 309 160 7 83 387 95 379 3.14e-65 213
Msa1391570 AT5G14550.3 37.778 315 159 9 101 386 58 364 2.41e-63 207
Msa1391570 AT5G14550.1 37.778 315 159 9 101 386 58 364 3.23e-63 207
Msa1391570 AT1G68380.1 38.811 286 149 6 108 389 124 387 8.75e-60 199
Msa1391570 AT5G14550.2 41.418 268 129 8 101 349 58 316 7.32e-59 195
Msa1391570 AT5G14550.4 37.954 303 148 10 101 386 58 337 1.43e-55 187
Msa1391570 AT1G62305.1 36.482 307 159 10 106 385 67 364 4.43e-55 186
Msa1391570 AT1G51770.2 37.809 283 125 5 108 387 124 358 1.98e-53 182
Msa1391570 AT1G11940.1 35.161 310 160 11 106 385 72 370 2.27e-53 182
Msa1391570 AT3G52060.1 33.103 290 158 7 108 387 75 338 4.91e-49 169
Msa1391570 AT5G25330.1 35.593 295 154 11 108 387 81 354 1.38e-46 164
Msa1391570 AT1G62305.3 35.357 280 137 7 106 366 67 321 3.58e-46 161
Msa1391570 AT5G22070.1 33.016 315 149 12 106 387 69 354 6.33e-42 151
Msa1391570 AT1G11940.2 41.899 179 95 4 106 278 72 247 3.56e-40 144
Msa1391570 AT1G62305.2 31.596 307 150 11 106 385 67 340 1.76e-39 144
Msa1391570 AT4G32290.1 33.677 291 170 9 108 387 93 371 1.45e-36 137
Msa1391570 AT3G21310.2 47.059 136 70 1 108 241 115 250 7.59e-36 132

Find 154 sgRNAs with CRISPR-Local

Find 511 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCCTGCCGGCCGCATATTT+TGG 0.032461 tig0021440:-38024 Msa1391570:three_prime_UTR
ATCTTCTCTTATTAGCTTTA+AGG 0.068909 tig0021440:-41537 Msa1391570:intron
ATATTTAACATGGTAAATTT+TGG 0.112275 tig0021440:-37867 Msa1391570:three_prime_UTR
ATTGAATTGAATTAAATTTC+TGG 0.142756 tig0021440:+44792 None:intergenic
ACCTGTATTACTCAAAATTT+CGG 0.191925 tig0021440:-40572 Msa1391570:CDS
GTCAGATAACTTGTTGCTTT+TGG 0.194550 tig0021440:-38109 Msa1391570:three_prime_UTR
TCATGAGCCCTATATGATTT+TGG 0.196809 tig0021440:+39441 None:intergenic
AGTCCAAGGTGTTGAATAAT+TGG 0.203942 tig0021440:+38166 None:intergenic
TGAATTAAATTTCTGGTGTT+TGG 0.219965 tig0021440:+44799 None:intergenic
CCTGTATTACTCAAAATTTC+GGG 0.228123 tig0021440:-40571 Msa1391570:CDS
TGCATCGCGTGTTGTGATTA+AGG 0.252817 tig0021440:-43895 Msa1391570:CDS
AACTCTGTTTGTTGGTGTTT+GGG 0.264082 tig0021440:+44837 None:intergenic
GAAAGGAGGTTAACGATATA+AGG 0.282463 tig0021440:-37960 Msa1391570:three_prime_UTR
AGCTAGTTTGATCGATTCTT+TGG 0.297182 tig0021440:-38131 Msa1391570:three_prime_UTR
GGACCGAAAAGAATTGTTTC+TGG 0.297694 tig0021440:-44213 Msa1391570:five_prime_UTR
TCATCGGTGTATTCTCTTGC+AGG 0.305952 tig0021440:+43924 None:intergenic
AAAACAAAGTGCTGGTTATC+AGG 0.312813 tig0021440:+41849 None:intergenic
AACAACTTGTCCAGTGTTTC+AGG 0.313763 tig0021440:+38200 None:intergenic
TCGGACAAAGATTGGCGTTT+AGG 0.323123 tig0021440:-44149 Msa1391570:CDS
CGATATAAGGTTGCTTCCTC+GGG 0.327563 tig0021440:-37947 Msa1391570:three_prime_UTR
TTGACTGGTCCGAAAGAAAA+TGG 0.328351 tig0021440:-39467 Msa1391570:CDS
AAACTCTGTTTGTTGGTGTT+TGG 0.328816 tig0021440:+44836 None:intergenic
CAAAAGGTAAGCAGCATATA+TGG 0.335007 tig0021440:+37718 None:intergenic
TTACTTGCCAACCTTCTTCC+AGG 0.340675 tig0021440:-39622 Msa1391570:intron
GAATTAAATTTCTGGTGTTT+GGG 0.341513 tig0021440:+44800 None:intergenic
AAGTCTTTCACCTCAACTTC+AGG 0.344606 tig0021440:+41470 None:intergenic
CTTATTAGCTTTAAGGATCC+TGG 0.362945 tig0021440:-41530 Msa1391570:intron
AAGATCAAAACTCTGTTTGT+TGG 0.375767 tig0021440:+44829 None:intergenic
AATCCACATTGGCTTCTTCA+TGG 0.376074 tig0021440:+44079 None:intergenic
CTTAATACCACAGCCTGGTT+TGG 0.380386 tig0021440:-39673 Msa1391570:intron
GAGTGAATTTCCTAGCAAAT+AGG 0.380561 tig0021440:+38222 None:intergenic
GTTGCTTCCTCGGGGATTGT+TGG 0.390519 tig0021440:-37938 Msa1391570:three_prime_UTR
TGATGCAGAGAGACGGATAT+TGG 0.394586 tig0021440:-41889 Msa1391570:CDS
ACAGGCACTGTGAAAGTATT+GGG 0.396020 tig0021440:-44919 Msa1391570:five_prime_UTR
AATGGCATCCAAAATCATAT+AGG 0.399439 tig0021440:-39449 Msa1391570:CDS
AACATCTTTCGACGCATTCC+AGG 0.404800 tig0021440:-44649 Msa1391570:intron
ATGGCATCCAAAATCATATA+GGG 0.407190 tig0021440:-39448 Msa1391570:CDS
TGCAGATATTGCCCGGGTCT+CGG 0.411129 tig0021440:-44112 Msa1391570:CDS
GTTGGCCTTGCTTGTGGAAT+GGG 0.412422 tig0021440:-38262 Msa1391570:CDS
ACGATATAAGGTTGCTTCCT+CGG 0.418086 tig0021440:-37948 Msa1391570:three_prime_UTR
TGAGCCGTTACTTTGTCAAC+CGG 0.425501 tig0021440:-43016 Msa1391570:CDS
TGTCATATGAGAAACCAATA+TGG 0.425967 tig0021440:+38083 None:intergenic
GGTGTGGGGTAAAATTTCTA+TGG 0.434211 tig0021440:-41913 Msa1391570:CDS
CAAATCTTGATAATAATGAT+TGG 0.437710 tig0021440:+44712 None:intergenic
TAACCTCCTTTCAATGTCTC+AGG 0.438299 tig0021440:+37971 None:intergenic
CTCCCATTCCCATGCGGACC+AGG 0.439348 tig0021440:+41512 None:intergenic
CAAAACTTTCTTAGTGAGAC+GGG 0.440455 tig0021440:+44749 None:intergenic
ATCCTGGTCCGCATGGGAAT+GGG 0.445467 tig0021440:-41514 Msa1391570:CDS
AAGTAACGGCTCACATGAAC+TGG 0.446500 tig0021440:+43026 None:intergenic
ACCCAAAATATGCGGCCGGC+AGG 0.450159 tig0021440:+38022 None:intergenic
GTCGCCTGGTTCCCTCCCAC+TGG 0.454872 tig0021440:-43814 Msa1391570:CDS
AGATGAAGTCGGACAAAGAT+TGG 0.456290 tig0021440:-44157 Msa1391570:CDS
TCTAGAAGAGAAGATGTAAC+AGG 0.459145 tig0021440:+43983 None:intergenic
AAAATTTCGGGCTTACTGCC+AGG 0.466717 tig0021440:-40559 Msa1391570:intron
CACATGAACTGGTTTAGACT+TGG 0.467869 tig0021440:+43037 None:intergenic
GATCCTGGTCCGCATGGGAA+TGG 0.469270 tig0021440:-41515 Msa1391570:CDS
TACAGGCACTGTGAAAGTAT+TGG 0.470088 tig0021440:-44920 Msa1391570:five_prime_UTR
CAAGGTAAACTGGCATTGCT+AGG 0.472797 tig0021440:-37998 Msa1391570:three_prime_UTR
CAGGCTGAAGAACTGCTTTG+TGG 0.473881 tig0021440:+44002 None:intergenic
GCAGCATGCTGTTATAGTTA+TGG 0.473890 tig0021440:-40601 Msa1391570:CDS
ATGTCGTTTGCAGGTGGTGT+GGG 0.476335 tig0021440:-41928 Msa1391570:intron
TACAGAAAGAAGTGCAAAGT+TGG 0.477720 tig0021440:-38280 Msa1391570:intron
TGAAATTCTCACCTGGAAGA+AGG 0.479456 tig0021440:+39611 None:intergenic
AATACCACAGCCTGGTTTGG+AGG 0.479852 tig0021440:-39670 Msa1391570:intron
TGAGGTGAAAGACTTTAGAA+AGG 0.485039 tig0021440:-41462 Msa1391570:CDS
GAAATTCACTCCTGAAACAC+TGG 0.486818 tig0021440:-38210 Msa1391570:CDS
GGGAGGACGGTGCCGAGACC+CGG 0.492209 tig0021440:+44100 None:intergenic
GCCACAAAACGATTTGTGAT+TGG 0.500464 tig0021440:+44869 None:intergenic
AGATTGGCGTTTAGGAAGCA+TGG 0.501553 tig0021440:-44141 Msa1391570:CDS
GTGTATTCTCTTGCAGGAGC+AGG 0.502351 tig0021440:+43930 None:intergenic
GCTGGTTATCAGGATCTTGA+AGG 0.502696 tig0021440:+41859 None:intergenic
CTTACAAGAGGCTGACATCA+AGG 0.502998 tig0021440:+37676 None:intergenic
CAATTCTTCCCCTCCAAACC+AGG 0.505839 tig0021440:+39660 None:intergenic
TGTTACATCTTCTCTTCTAG+AGG 0.506276 tig0021440:-43981 Msa1391570:CDS
AGTTGGCCTTGCTTGTGGAA+TGG 0.507523 tig0021440:-38263 Msa1391570:CDS
ATCCTGGTGGAATTGCAAAC+TGG 0.510654 tig0021440:-39503 Msa1391570:CDS
ATCCACATTGGCTTCTTCAT+GGG 0.520386 tig0021440:+44080 None:intergenic
GTTGAGGCTTGATCGCCTGC+CGG 0.522938 tig0021440:-38037 Msa1391570:three_prime_UTR
TGCAAAGTTGGCCTTGCTTG+TGG 0.527174 tig0021440:-38268 Msa1391570:CDS
CCTTTATGGCAGGGTCATGA+AGG 0.527603 tig0021440:-43086 Msa1391570:intron
TTCTTTCGGACCAGTCAACA+TGG 0.528625 tig0021440:+39472 None:intergenic
TTTCCAATTATTCAACACCT+TGG 0.532514 tig0021440:-38169 Msa1391570:CDS
AAACGATTTGTGATTGGTGG+TGG 0.535066 tig0021440:+44875 None:intergenic
ATTATTTAATTAGATGAAGT+CGG 0.535376 tig0021440:-44168 Msa1391570:exon
TGTAAATTGCAGCATTGTTG+AGG 0.537290 tig0021440:-38053 Msa1391570:three_prime_UTR
ACTTCTGAATAGAGACAGTA+AGG 0.537801 tig0021440:+37775 None:intergenic
ATATAGTCAAAATGATATAG+AGG 0.539449 tig0021440:+41711 None:intergenic
CAAATATCAGCTATGTTGAC+TGG 0.539911 tig0021440:-41668 Msa1391570:intron
ATAGCATACCTTCTCATCAC+TGG 0.539950 tig0021440:+38366 None:intergenic
GGTGATATGCAGATATTGCC+CGG 0.545094 tig0021440:-44119 Msa1391570:CDS
TTTAAGGATCCTGGTCCGCA+TGG 0.546986 tig0021440:-41521 Msa1391570:CDS
ATACCACAGCCTGGTTTGGA+GGG 0.547665 tig0021440:-39669 Msa1391570:intron
GTTACATCTTCTCTTCTAGA+GGG 0.550311 tig0021440:-43980 Msa1391570:CDS
TCAAAACTTTCTTAGTGAGA+CGG 0.552792 tig0021440:+44748 None:intergenic
CCTGGCCACTGCGTATATCC+CGG 0.557559 tig0021440:+42997 None:intergenic
GTAAACTGGCATTGCTAGGG+TGG 0.558244 tig0021440:-37994 Msa1391570:three_prime_UTR
CAGAAAGTAAAACAAAGTGC+TGG 0.558604 tig0021440:+41841 None:intergenic
GGAGGACGGTGCCGAGACCC+GGG 0.558768 tig0021440:+44101 None:intergenic
AGACTTTAGAAAGGGTGCAC+AGG 0.558853 tig0021440:-41453 Msa1391570:intron
ATCGATCAAACTAGCTGAAG+GGG 0.560447 tig0021440:+38138 None:intergenic
TACCACAGCCTGGTTTGGAG+GGG 0.561051 tig0021440:-39668 Msa1391570:intron
CCGGGATATACGCAGTGGCC+AGG 0.561306 tig0021440:-42997 Msa1391570:intron
GGTCAGTAACCCATGTTGAC+TGG 0.562757 tig0021440:-39482 Msa1391570:CDS
CACATTGGCTTCTTCATGGG+AGG 0.564327 tig0021440:+44083 None:intergenic
TTCCTAGCAAATAGGTAACA+TGG 0.566551 tig0021440:+38230 None:intergenic
GAGGTGAAAGACTTTAGAAA+GGG 0.567652 tig0021440:-41461 Msa1391570:CDS
GAATCGATCAAACTAGCTGA+AGG 0.568750 tig0021440:+38136 None:intergenic
AGCCATGTTACCTATTTGCT+AGG 0.572145 tig0021440:-38232 Msa1391570:CDS
GATTGGCGTTTAGGAAGCAT+GGG 0.574416 tig0021440:-44140 Msa1391570:CDS
ATTCTCACCTGGAAGAAGGT+TGG 0.577162 tig0021440:+39615 None:intergenic
CATGTCGTTTGCAGGTGGTG+TGG 0.577255 tig0021440:-41929 Msa1391570:intron
AATCGATCAAACTAGCTGAA+GGG 0.579333 tig0021440:+38137 None:intergenic
TATTCTCTTGCAGGAGCAGG+TGG 0.582557 tig0021440:+43933 None:intergenic
TTGCACCCAAAATATGCGGC+CGG 0.585382 tig0021440:+38018 None:intergenic
AGGATTGTTTGATTTGTGTG+TGG 0.585528 tig0021440:-44234 Msa1391570:five_prime_UTR
TTAAGGATCCTGGTCCGCAT+GGG 0.588972 tig0021440:-41520 Msa1391570:CDS
CTGAAGAACTGCTTTGTGGA+GGG 0.593232 tig0021440:+44006 None:intergenic
GACCAGTTTGCAATTCCACC+AGG 0.594187 tig0021440:+39501 None:intergenic
TTAAACGTAAGAATCGAGAA+AGG 0.598539 tig0021440:+37751 None:intergenic
TGAATCCCATTCCACAAGCA+AGG 0.603455 tig0021440:+38257 None:intergenic
ACAAAACGATTTGTGATTGG+TGG 0.603835 tig0021440:+44872 None:intergenic
AAGGTAAACTGGCATTGCTA+GGG 0.604250 tig0021440:-37997 Msa1391570:three_prime_UTR
TTACAAGAGGCTGACATCAA+GGG 0.605516 tig0021440:+37677 None:intergenic
ACGCGATGCAATCTCTTCAT+CGG 0.605620 tig0021440:+43908 None:intergenic
GACGTGTACACTAACATCAA+CGG 0.607636 tig0021440:+38390 None:intergenic
TCGCATGTTACCTGAAGTTG+AGG 0.610305 tig0021440:-41480 Msa1391570:CDS
TTGGCTTCTTCATGGGAGGA+CGG 0.611072 tig0021440:+44087 None:intergenic
CTATGGTTGATGCAGAGAGA+CGG 0.614637 tig0021440:-41896 Msa1391570:CDS
CTGGTTATCAGGATCTTGAA+GGG 0.615592 tig0021440:+41860 None:intergenic
CTTTATGGCAGGGTCATGAA+GGG 0.618829 tig0021440:-43085 Msa1391570:intron
GGGTGGCCTGAGACATTGAA+AGG 0.619450 tig0021440:-37977 Msa1391570:three_prime_UTR
TACCTTGCACCCAAAATATG+CGG 0.620200 tig0021440:+38014 None:intergenic
GAATGCGTCGAAAGATGTTG+AGG 0.623192 tig0021440:+44653 None:intergenic
GTGATATGCAGATATTGCCC+GGG 0.625004 tig0021440:-44118 Msa1391570:CDS
GCTGAAGAACTGCTTTGTGG+AGG 0.626465 tig0021440:+44005 None:intergenic
CCGAAAAGAATTGTTTCTGG+AGG 0.626875 tig0021440:-44210 Msa1391570:five_prime_UTR
ACTAAGACAATAATCCACAT+TGG 0.635102 tig0021440:+44068 None:intergenic
CTGAAGGGGATTCAAGTCCA+AGG 0.638147 tig0021440:+38152 None:intergenic
TCTCTTCTAGAGGGTGCAAG+CGG 0.639407 tig0021440:-43971 Msa1391570:CDS
TCTTTCGGACCAGTCAACAT+GGG 0.643350 tig0021440:+39473 None:intergenic
TGTCGTTTGCAGGTGGTGTG+GGG 0.643747 tig0021440:-41927 Msa1391570:intron
ACACGTCACCAGTGATGAGA+AGG 0.644755 tig0021440:-38374 Msa1391570:intron
CTGGTCCGCATGGGAATGGG+AGG 0.644851 tig0021440:-41511 Msa1391570:CDS
CTCCCATGAAGAAGCCAATG+TGG 0.646512 tig0021440:-44082 Msa1391570:CDS
GAGCCGTTACTTTGTCAACC+GGG 0.655060 tig0021440:-43015 Msa1391570:CDS
CATATGAGAAACCAATATGG+AGG 0.673924 tig0021440:+38086 None:intergenic
AAAACTTTCTTAGTGAGACG+GGG 0.674383 tig0021440:+44750 None:intergenic
CAAGAGGCTGACATCAAGGG+AGG 0.678504 tig0021440:+37680 None:intergenic
GATATAAGGTTGCTTCCTCG+GGG 0.688803 tig0021440:-37946 Msa1391570:three_prime_UTR
TATCCCGGTTGACAAAGTAA+CGG 0.706790 tig0021440:+43012 None:intergenic
TGGCCTGAGACATTGAAAGG+AGG 0.712177 tig0021440:-37974 Msa1391570:three_prime_UTR
GTCAACCGGGATATACGCAG+TGG 0.713259 tig0021440:-43002 Msa1391570:CDS
GAGTACCTCCCATTCCCATG+CGG 0.734662 tig0021440:+41506 None:intergenic
CAGTCATCCAACAATCCCCG+AGG 0.749854 tig0021440:+37931 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAATTGTTAATTTCTT+AGG - tig0021440:38182-38201 Msa1391570:CDS 10.0%
!! TTATAGAATACAAATTTAAA+CGG - tig0021440:41259-41278 Msa1391570:intron 10.0%
!!! CAATTTTTTAAAAAAAATTG+GGG - tig0021440:41517-41536 Msa1391570:CDS 10.0%
!!! TTAAAAAATTCTAACTTTTT+TGG - tig0021440:43789-43808 Msa1391570:CDS 10.0%
!!! TAAAAAATTCTAACTTTTTT+GGG - tig0021440:43790-43809 Msa1391570:CDS 10.0%
!!! TATAAGTTTTATATTTAACA+TGG - tig0021440:44746-44765 Msa1391570:five_prime_UTR 10.0%
!!! AAAAAGTCTTTTAAAATTAC+AGG - tig0021440:37686-37705 Msa1391570:three_prime_UTR 15.0%
!! ATTGAATTGAATTAAATTTC+TGG + tig0021440:37834-37853 None:intergenic 15.0%
!! ATTATTTAATTAGATGAAGT+CGG - tig0021440:38455-38474 Msa1391570:intron 15.0%
!! GTCATAAATATATTTCAAAA+AGG + tig0021440:38953-38972 None:intergenic 15.0%
!! TTTATCAGTAAAAGAATAAA+TGG - tig0021440:39031-39050 Msa1391570:intron 15.0%
!!! ATTTTATCAGAAAACTAAAT+TGG - tig0021440:39146-39165 Msa1391570:intron 15.0%
!! ACATTTATGAAGATTATATT+AGG + tig0021440:39395-39414 None:intergenic 15.0%
!! TTTATAAAAATAAATCTACC+TGG + tig0021440:42085-42104 None:intergenic 15.0%
!!! CTACTATTCTTTTTTTTTTA+TGG + tig0021440:42402-42421 None:intergenic 15.0%
!! AATTATCTATAATCAGTTAT+AGG - tig0021440:42883-42902 Msa1391570:intron 15.0%
!!! AAAAAGTTGGTTTATTTATA+GGG + tig0021440:43554-43573 None:intergenic 15.0%
!!! ATGAATTTTTATATTTTTGG+TGG - tig0021440:43737-43756 Msa1391570:intron 15.0%
!!! AAAAAATTCTAACTTTTTTG+GGG - tig0021440:43791-43810 Msa1391570:CDS 15.0%
!!! TTGTGATTGAAAATTTTATA+GGG - tig0021440:43896-43915 Msa1391570:CDS 15.0%
!!! TGGTGTTTTATTATAAAAAA+GGG + tig0021440:44015-44034 None:intergenic 15.0%
!!! TTGGTGTTTTATTATAAAAA+AGG + tig0021440:44016-44035 None:intergenic 15.0%
!! ATCATTATAGTTATTATTTC+TGG - tig0021440:44100-44119 Msa1391570:CDS 15.0%
!! AAAACTTATATAACCAAAAA+TGG + tig0021440:44736-44755 None:intergenic 15.0%
!!! ATATTTAACATGGTAAATTT+TGG - tig0021440:44756-44775 Msa1391570:five_prime_UTR 15.0%
!!! TATTTAACATGGTAAATTTT+GGG - tig0021440:44757-44776 Msa1391570:five_prime_UTR 15.0%
!!! CAAATCTTGATAATAATGAT+TGG + tig0021440:37914-37933 None:intergenic 20.0%
!! AAGATAGTATAGTAAAAATC+TGG + tig0021440:38049-38068 None:intergenic 20.0%
!!! TTTGATTTTTTTGAAACAAC+CGG + tig0021440:38771-38790 None:intergenic 20.0%
!!! TAAAGAAGTATTAACTTGTT+GGG - tig0021440:39096-39115 Msa1391570:intron 20.0%
!! TAAATTGGAATGGTTAATAA+GGG - tig0021440:39161-39180 Msa1391570:intron 20.0%
!!! TTTTTTGTTGGTAATTTCAA+TGG - tig0021440:39444-39463 Msa1391570:CDS 20.0%
!! AACTCCAAATTTACTTTATT+TGG - tig0021440:39910-39929 Msa1391570:intron 20.0%
!! AATTAATCAAAACATCAACT+AGG + tig0021440:39960-39979 None:intergenic 20.0%
!!! TGCTGATTAATTAGTTTTAT+TGG - tig0021440:40843-40862 Msa1391570:intron 20.0%
!! ATATAGTCAAAATGATATAG+AGG + tig0021440:40915-40934 None:intergenic 20.0%
!!! CTTTTCAATAAGCAATTAAT+GGG + tig0021440:41469-41488 None:intergenic 20.0%
!!! TCTTTTCAATAAGCAATTAA+TGG + tig0021440:41470-41489 None:intergenic 20.0%
!!! TTTTTAAAAAAAATTGGGGA+AGG - tig0021440:41521-41540 Msa1391570:CDS 20.0%
!!! TTTTAAAAAAAATTGGGGAA+GGG - tig0021440:41522-41541 Msa1391570:CDS 20.0%
!!! GGAAATTTTATTAATCAAAG+TGG - tig0021440:41545-41564 Msa1391570:intron 20.0%
!! GAAAATGAATCTACTAAATT+GGG + tig0021440:41964-41983 None:intergenic 20.0%
!! TGAAAATGAATCTACTAAAT+TGG + tig0021440:41965-41984 None:intergenic 20.0%
!! CAATTTCTTTAATCTCATAA+AGG - tig0021440:42127-42146 Msa1391570:intron 20.0%
!!! ATTTAGAGCAGAAATAAATA+TGG + tig0021440:42161-42180 None:intergenic 20.0%
!! GTTTATCATTTCATTTAATG+AGG - tig0021440:42205-42224 Msa1391570:intron 20.0%
!!! TTTTGTTACTTAAGCTTAAA+TGG - tig0021440:42282-42301 Msa1391570:intron 20.0%
!!! AATACATTTTACGTTTTCTA+GGG + tig0021440:42859-42878 None:intergenic 20.0%
!!! AAATACATTTTACGTTTTCT+AGG + tig0021440:42860-42879 None:intergenic 20.0%
!! ATTTATATTTCATAGCTTCA+GGG + tig0021440:42910-42929 None:intergenic 20.0%
!! AATTTATATTTCATAGCTTC+AGG + tig0021440:42911-42930 None:intergenic 20.0%
!!! AAAAATGCAATTTTGCTTTA+TGG - tig0021440:43452-43471 Msa1391570:intron 20.0%
!!! AAAATGCAATTTTGCTTTAT+GGG - tig0021440:43453-43472 Msa1391570:intron 20.0%
!!! CAAAAAGTTGGTTTATTTAT+AGG + tig0021440:43555-43574 None:intergenic 20.0%
!!! AAATTTTCAATCACAACTTT+TGG + tig0021440:43892-43911 None:intergenic 20.0%
!!! GTTGTGATTGAAAATTTTAT+AGG - tig0021440:43895-43914 Msa1391570:CDS 20.0%
!!! GAAAAGTTGGTATATTTATA+GGG - tig0021440:43964-43983 Msa1391570:CDS 20.0%
!!! GTTTTATTATAAAAAAGGGA+GGG + tig0021440:44011-44030 None:intergenic 20.0%
!!! TGTTTTATTATAAAAAAGGG+AGG + tig0021440:44012-44031 None:intergenic 20.0%
!! TAATGATATTACTACAGAAA+GGG + tig0021440:44087-44106 None:intergenic 20.0%
!! ATAATGATATTACTACAGAA+AGG + tig0021440:44088-44107 None:intergenic 20.0%
!! CATAACAAGAAAAAATGAAA+AGG + tig0021440:44176-44195 None:intergenic 20.0%
!!! TTTTTTCTTGTTATGTTTTG+CGG - tig0021440:44181-44200 Msa1391570:five_prime_UTR 20.0%
!! TTATATAACCAAAAATGGAA+GGG + tig0021440:44731-44750 None:intergenic 20.0%
!!! ATTTAACATGGTAAATTTTG+GGG - tig0021440:44758-44777 Msa1391570:five_prime_UTR 20.0%
!!! GAATTAAATTTCTGGTGTTT+GGG + tig0021440:37826-37845 None:intergenic 25.0%
!!! TGAATTAAATTTCTGGTGTT+TGG + tig0021440:37827-37846 None:intergenic 25.0%
!! GATTGAATTTAAAGTGTAAG+AGG - tig0021440:38292-38311 Msa1391570:intron 25.0%
!! TTTTCTGCATCAATCTATTT+AGG - tig0021440:38369-38388 Msa1391570:intron 25.0%
!!! GTAAAGAAGTATTAACTTGT+TGG - tig0021440:39095-39114 Msa1391570:intron 25.0%
! ATCAGAAAACTAAATTGGAA+TGG - tig0021440:39151-39170 Msa1391570:intron 25.0%
! CTAAATTGGAATGGTTAATA+AGG - tig0021440:39160-39179 Msa1391570:intron 25.0%
! AAATTGGAATGGTTAATAAG+GGG - tig0021440:39162-39181 Msa1391570:intron 25.0%
! TTCAAGCAAAGCATAAATTT+CGG + tig0021440:39212-39231 None:intergenic 25.0%
! TTTATGCTTTGCTTGAAAAT+TGG - tig0021440:39215-39234 Msa1391570:intron 25.0%
!!! TATCCTGAACTTTTTTTTGT+TGG - tig0021440:39432-39451 Msa1391570:CDS 25.0%
! TTACCAACAAAAAAAAGTTC+AGG + tig0021440:39438-39457 None:intergenic 25.0%
! CAAGCCAAATAAAGTAAATT+TGG + tig0021440:39917-39936 None:intergenic 25.0%
!!! GAATTCATTGCTGATTTTTT+TGG - tig0021440:39990-40009 Msa1391570:intron 25.0%
!!! TAGAAAAGTTGGTAGAAAAT+AGG - tig0021440:40329-40348 Msa1391570:intron 25.0%
!! TTTTCTAATGGTTTCTCTAA+TGG + tig0021440:40464-40483 None:intergenic 25.0%
! AACCATTAGAAAAGATTTAG+AGG - tig0021440:40471-40490 Msa1391570:intron 25.0%
! GTTCTATCAAAGATCATATT+TGG + tig0021440:40511-40530 None:intergenic 25.0%
!!! ACTTTGTTTTACTTTCTGAT+AGG - tig0021440:40787-40806 Msa1391570:intron 25.0%
!!! ATCTTCTCTTATTAGCTTTA+AGG - tig0021440:41086-41105 Msa1391570:intron 25.0%
! AACACTTATCAACTTATATG+AGG + tig0021440:41328-41347 None:intergenic 25.0%
! AATAAGCAATTAATGGGAAT+AGG + tig0021440:41463-41482 None:intergenic 25.0%
! TTTAAAAAAAATTGGGGAAG+GGG - tig0021440:41523-41542 Msa1391570:CDS 25.0%
! AAGAAAAGTTATGGAGAAAT+AGG + tig0021440:41722-41741 None:intergenic 25.0%
! TAGATTGGAAAGAAAAGTTA+TGG + tig0021440:41731-41750 None:intergenic 25.0%
! TTGAACATAAAGTCATAGAT+TGG + tig0021440:41746-41765 None:intergenic 25.0%
!!! TTTTGAGTAATACAGGTAAT+CGG + tig0021440:42048-42067 None:intergenic 25.0%
! ACCTGTATTACTCAAAATTT+CGG - tig0021440:42051-42070 Msa1391570:intron 25.0%
! TTTAATGAGGTTATATATGC+TGG - tig0021440:42218-42237 Msa1391570:intron 25.0%
! TTAATGAGGTTATATATGCT+GGG - tig0021440:42219-42238 Msa1391570:intron 25.0%
!! AAAAGTTTCAGTGCATATTT+TGG + tig0021440:42327-42346 None:intergenic 25.0%
!!! TATCCTTTTAGAATTTTGTG+AGG + tig0021440:42498-42517 None:intergenic 25.0%
!! ATTCTAAAAGGATAGCAAAA+TGG - tig0021440:42504-42523 Msa1391570:intron 25.0%
!! GGAGTTTCTTTTGTATTTTA+GGG + tig0021440:42659-42678 None:intergenic 25.0%
!! AGGAGTTTCTTTTGTATTTT+AGG + tig0021440:42660-42679 None:intergenic 25.0%
! AATGCATAAGTTAGATTAAC+TGG + tig0021440:43084-43103 None:intergenic 25.0%
!! TACTCAATATTCATTCCTTT+TGG - tig0021440:43266-43285 Msa1391570:intron 25.0%
! GAGTAGATTTAAATACTTGT+TGG - tig0021440:43373-43392 Msa1391570:intron 25.0%
! AAAACGTATTTAACCCAAAA+AGG + tig0021440:43523-43542 None:intergenic 25.0%
!!! TTTTGGGTTAAATACGTTTT+TGG - tig0021440:43523-43542 Msa1391570:intron 25.0%
!!! AGTGAAGATGGAAATTTTTT+GGG + tig0021440:43586-43605 None:intergenic 25.0%
!!! AAGTGAAGATGGAAATTTTT+TGG + tig0021440:43587-43606 None:intergenic 25.0%
! TACATACGAGTTTACTTAAA+AGG + tig0021440:43619-43638 None:intergenic 25.0%
!! AAAAGTCTAAAACGAAAAGT+TGG - tig0021440:43951-43970 Msa1391570:CDS 25.0%
!!! CGAAAAGTTGGTATATTTAT+AGG - tig0021440:43963-43982 Msa1391570:CDS 25.0%
!! AAACACCAAATCAAACTTTT+AGG - tig0021440:44027-44046 Msa1391570:CDS 25.0%
! ATTCTCCTAAAAGTTTGATT+TGG + tig0021440:44035-44054 None:intergenic 25.0%
! AATTAAAAGAGACATCAAGT+TGG - tig0021440:44052-44071 Msa1391570:CDS 25.0%
! ATTAAAAGAGACATCAAGTT+GGG - tig0021440:44053-44072 Msa1391570:CDS 25.0%
! AATGATATTACTACAGAAAG+GGG + tig0021440:44086-44105 None:intergenic 25.0%
!! ATATTTTTCCCTTCCATTTT+TGG - tig0021440:44720-44739 Msa1391570:five_prime_UTR 25.0%
! CTTATATAACCAAAAATGGA+AGG + tig0021440:44732-44751 None:intergenic 25.0%
!! TTTAACATGGTAAATTTTGG+GGG - tig0021440:44759-44778 Msa1391570:five_prime_UTR 25.0%
AAGATCAAAACTCTGTTTGT+TGG + tig0021440:37797-37816 None:intergenic 30.0%
TCAAAACTTTCTTAGTGAGA+CGG + tig0021440:37878-37897 None:intergenic 30.0%
! TCAGTTTTTGTACCCAAATA+CGG - tig0021440:38087-38106 Msa1391570:three_prime_UTR 30.0%
! TGTATATGTTTCTGAACATG+TGG - tig0021440:38247-38266 Msa1391570:CDS 30.0%
! GTATATGTTTCTGAACATGT+GGG - tig0021440:38248-38267 Msa1391570:CDS 30.0%
! GTGATTATTCATTTGCTACT+AGG - tig0021440:38270-38289 Msa1391570:CDS 30.0%
ACTAAGACAATAATCCACAT+TGG + tig0021440:38558-38577 None:intergenic 30.0%
!! AACTTTTTCCAAGTAAGTGT+TGG - tig0021440:38846-38865 Msa1391570:intron 30.0%
AAATTTCTTCCAAACCGATA+AGG + tig0021440:38924-38943 None:intergenic 30.0%
CATCAACTATACTACTAAAC+TGG + tig0021440:39000-39019 None:intergenic 30.0%
CAGTTTAGTAGTATAGTTGA+TGG - tig0021440:38998-39017 Msa1391570:intron 30.0%
AGTTGTGACAATGATGTTTA+CGG - tig0021440:39331-39350 Msa1391570:intron 30.0%
TGAGTTTACATGTTCTGTTA+CGG - tig0021440:39711-39730 Msa1391570:intron 30.0%
!! GTAGCTTATGTTTTATTCAG+TGG - tig0021440:39851-39870 Msa1391570:intron 30.0%
TAATCAAAACATCAACTAGG+AGG + tig0021440:39957-39976 None:intergenic 30.0%
! TCTACCAACTTTTCTACTAT+AGG + tig0021440:40325-40344 None:intergenic 30.0%
TTGATCTACTCTTCTTACAA+CGG + tig0021440:40395-40414 None:intergenic 30.0%
TGTAAGAAGAGTAGATCAAA+TGG - tig0021440:40396-40415 Msa1391570:intron 30.0%
! GTTTCTCTAATGGTTTTCTT+AGG + tig0021440:40454-40473 None:intergenic 30.0%
! GACCTCTAAATCTTTTCTAA+TGG + tig0021440:40476-40495 None:intergenic 30.0%
AGATTTAGAGGTCAATGAAT+TGG - tig0021440:40483-40502 Msa1391570:intron 30.0%
TGATCTTTGATAGAACACTA+TGG - tig0021440:40515-40534 Msa1391570:intron 30.0%
!!! TGGTTGTTGTTGTTGTTTTT+AGG - tig0021440:40583-40602 Msa1391570:CDS 30.0%
TTTACTTTCTGATAGGTACA+TGG - tig0021440:40794-40813 Msa1391570:intron 30.0%
ATCAAGCAATATTACATAGC+AGG - tig0021440:40988-41007 Msa1391570:intron 30.0%
TCAAGCAATATTACATAGCA+GGG - tig0021440:40989-41008 Msa1391570:intron 30.0%
TTAAAAAAAATTGGGGAAGG+GGG - tig0021440:41524-41543 Msa1391570:CDS 30.0%
ATTAATCAAAGTGGCACTAA+TGG - tig0021440:41554-41573 Msa1391570:intron 30.0%
AGAATATCAATTCTAGTGCA+TGG - tig0021440:41777-41796 Msa1391570:intron 30.0%
! GTTGAGTCTTTTGTCATAAA+AGG - tig0021440:41805-41824 Msa1391570:intron 30.0%
CCTGTATTACTCAAAATTTC+GGG - tig0021440:42052-42071 Msa1391570:intron 30.0%
TCTCTCTTTAGCATAGTATA+AGG - tig0021440:42252-42271 Msa1391570:intron 30.0%
! TTTTATGGCTTAGATGGTTA+AGG - tig0021440:42744-42763 Msa1391570:intron 30.0%
!!! TTTTGCTTTTCTAGTTTGGA+TGG + tig0021440:42827-42846 None:intergenic 30.0%
!!! AAGGTTTTGCTTTTCTAGTT+TGG + tig0021440:42831-42850 None:intergenic 30.0%
! TGATTTTAGATTGTTGATCC+TGG - tig0021440:43104-43123 Msa1391570:intron 30.0%
!!! TTTTGGATGCCATTTTCTTT+CGG + tig0021440:43168-43187 None:intergenic 30.0%
AATGGCATCCAAAATCATAT+AGG - tig0021440:43174-43193 Msa1391570:intron 30.0%
ATGGCATCCAAAATCATATA+GGG - tig0021440:43175-43194 Msa1391570:intron 30.0%
! TGTGTTTCTATTGATGGAAA+GGG + tig0021440:43332-43351 None:intergenic 30.0%
! TTGTGTTTCTATTGATGGAA+AGG + tig0021440:43333-43352 None:intergenic 30.0%
ATCAATAGAAACACAAGTCT+GGG - tig0021440:43337-43356 Msa1391570:intron 30.0%
AGTATTTAAATCTACTCCAG+TGG + tig0021440:43370-43389 None:intergenic 30.0%
! TATGACAGTTCATTCCTTTT+TGG - tig0021440:43506-43525 Msa1391570:intron 30.0%
! ATGACAGTTCATTCCTTTTT+GGG - tig0021440:43507-43526 Msa1391570:intron 30.0%
! AGTTGGTTTATTTATAGGGA+GGG + tig0021440:43550-43569 None:intergenic 30.0%
! AAGTTGGTTTATTTATAGGG+AGG + tig0021440:43551-43570 None:intergenic 30.0%
!!! GTGAAGATGGAAATTTTTTG+GGG + tig0021440:43585-43604 None:intergenic 30.0%
ATACGAGTTTACTTAAAAGG+AGG + tig0021440:43616-43635 None:intergenic 30.0%
ACACGAGTCAACTTAAAAAT+AGG - tig0021440:43864-43883 Msa1391570:CDS 30.0%
CACGAGTCAACTTAAAAATA+GGG - tig0021440:43865-43884 Msa1391570:CDS 30.0%
! AAGTCGAAGGAAAATTTTAG+AGG - tig0021440:43924-43943 Msa1391570:CDS 30.0%
! AGTCGAAGGAAAATTTTAGA+GGG - tig0021440:43925-43944 Msa1391570:CDS 30.0%
!! AAGTTGGTATATTTATAGGG+AGG - tig0021440:43967-43986 Msa1391570:CDS 30.0%
! AGTTGGTATATTTATAGGGA+GGG - tig0021440:43968-43987 Msa1391570:CDS 30.0%
! GGGAGGGTTAAAAATATTTT+TGG + tig0021440:43995-44014 None:intergenic 30.0%
! TTAAAAGAGACATCAAGTTG+GGG - tig0021440:44054-44073 Msa1391570:CDS 30.0%
TTTGTTGAGAATGAATGAAC+TGG - tig0021440:44297-44316 Msa1391570:intron 30.0%
TTTCCAATTATTCAACACCT+TGG - tig0021440:44454-44473 Msa1391570:intron 30.0%
TGTCATATGAGAAACCAATA+TGG + tig0021440:44543-44562 None:intergenic 30.0%
TTAAACGTAAGAATCGAGAA+AGG + tig0021440:44875-44894 None:intergenic 30.0%
GATAGAAAAACACTGACAAA+AGG + tig0021440:44924-44943 None:intergenic 30.0%
ACAAAACGATTTGTGATTGG+TGG + tig0021440:37754-37773 None:intergenic 35.0%
! ACCAATCACAAATCGTTTTG+TGG - tig0021440:37753-37772 Msa1391570:three_prime_UTR 35.0%
! AACTCTGTTTGTTGGTGTTT+GGG + tig0021440:37789-37808 None:intergenic 35.0%
! AAACTCTGTTTGTTGGTGTT+TGG + tig0021440:37790-37809 None:intergenic 35.0%
AAAACTTTCTTAGTGAGACG+GGG + tig0021440:37876-37895 None:intergenic 35.0%
CAAAACTTTCTTAGTGAGAC+GGG + tig0021440:37877-37896 None:intergenic 35.0%
! AAAGATTCCCTTTTTGTACC+TGG + tig0021440:37995-38014 None:intergenic 35.0%
TTTGTACCCAAATACGGAAA+TGG - tig0021440:38093-38112 Msa1391570:three_prime_UTR 35.0%
TTGTACCCAAATACGGAAAT+GGG - tig0021440:38094-38113 Msa1391570:three_prime_UTR 35.0%
AAAACCCCATTTCCGTATTT+GGG + tig0021440:38102-38121 None:intergenic 35.0%
!! AGGATTGTTTGATTTGTGTG+TGG - tig0021440:38389-38408 Msa1391570:CDS 35.0%
! CCTCCAGAAACAATTCTTTT+CGG + tig0021440:38416-38435 None:intergenic 35.0%
TCTAGAAGAGAAGATGTAAC+AGG + tig0021440:38643-38662 None:intergenic 35.0%
TGTTACATCTTCTCTTCTAG+AGG - tig0021440:38642-38661 Msa1391570:intron 35.0%
GTTACATCTTCTCTTCTAGA+GGG - tig0021440:38643-38662 Msa1391570:intron 35.0%
!!! GATTTTTTTGAAACAACCGG+TGG + tig0021440:38768-38787 None:intergenic 35.0%
! TGTCCCATAATTTTTCCAGT+GGG + tig0021440:38827-38846 None:intergenic 35.0%
! TTGTCCCATAATTTTTCCAG+TGG + tig0021440:38828-38847 None:intergenic 35.0%
TAAAGTAGCCAACACTTACT+TGG + tig0021440:38857-38876 None:intergenic 35.0%
TTTCTCAGTTATCGCCTTAT+CGG - tig0021440:38907-38926 Msa1391570:intron 35.0%
CAAAGCATAAATTTCGGCTA+AGG + tig0021440:39206-39225 None:intergenic 35.0%
TTGGTAGAGTTTCTCAAACT+TGG - tig0021440:39234-39253 Msa1391570:intron 35.0%
TGGTAGAGTTTCTCAAACTT+GGG - tig0021440:39235-39254 Msa1391570:intron 35.0%
ACTTGGGTAATGATGTACAA+AGG - tig0021440:39251-39270 Msa1391570:intron 35.0%
TAATTTCAATGGCTGATACG+TGG - tig0021440:39455-39474 Msa1391570:CDS 35.0%
CATAAAGGAGAAAATCTTCC+AGG + tig0021440:39525-39544 None:intergenic 35.0%
! CTGGAAGATTTTCTCCTTTA+TGG - tig0021440:39523-39542 Msa1391570:intron 35.0%
! AAGATTTTCTCCTTTATGGC+AGG - tig0021440:39527-39546 Msa1391570:intron 35.0%
! AGATTTTCTCCTTTATGGCA+GGG - tig0021440:39528-39547 Msa1391570:intron 35.0%
GTAACAAGACTATATGTACC+TGG + tig0021440:39647-39666 None:intergenic 35.0%
AGATTGCCAAAGCAAAACAA+GGG + tig0021440:39780-39799 None:intergenic 35.0%
TAGATTGCCAAAGCAAAACA+AGG + tig0021440:39781-39800 None:intergenic 35.0%
GGAATAAGTTTAACCTCATC+TGG - tig0021440:39872-39891 Msa1391570:intron 35.0%
! AAAGTACCACTTAAGCTGAA+AGG - tig0021440:40118-40137 Msa1391570:intron 35.0%
AACTTTCCTTTCAGCTTAAG+TGG + tig0021440:40127-40146 None:intergenic 35.0%
AGCTGAAAGGAAAGTTCTAT+CGG - tig0021440:40131-40150 Msa1391570:intron 35.0%
AGCACCTATAGTAGAAAAGT+TGG - tig0021440:40318-40337 Msa1391570:intron 35.0%
TGGTAGAAAATAGGCTTAGA+TGG - tig0021440:40338-40357 Msa1391570:intron 35.0%
GAAAATAGGCTTAGATGGTT+TGG - tig0021440:40343-40362 Msa1391570:intron 35.0%
AAGAAGAGTAGATCAAATGG+AGG - tig0021440:40399-40418 Msa1391570:intron 35.0%
! ACTAGAAAACTACTGGTTAC+TGG + tig0021440:40652-40671 None:intergenic 35.0%
! AGTAACCAGTAGTTTTCTAG+TGG - tig0021440:40651-40670 Msa1391570:intron 35.0%
!! AAAACAAAGTGCTGGTTATC+AGG + tig0021440:40777-40796 None:intergenic 35.0%
CAGAAAGTAAAACAAAGTGC+TGG + tig0021440:40785-40804 None:intergenic 35.0%
CAAATATCAGCTATGTTGAC+TGG - tig0021440:40955-40974 Msa1391570:intron 35.0%
!! CTTATTAGCTTTAAGGATCC+TGG - tig0021440:41093-41112 Msa1391570:intron 35.0%
! TGAGGTGAAAGACTTTAGAA+AGG - tig0021440:41161-41180 Msa1391570:intron 35.0%
! GAGGTGAAAGACTTTAGAAA+GGG - tig0021440:41162-41181 Msa1391570:intron 35.0%
ACTGAATTCTATCTCCAACA+TGG + tig0021440:41212-41231 None:intergenic 35.0%
AAGTAGCTTCTACAAAAGTG+AGG - tig0021440:41365-41384 Msa1391570:intron 35.0%
AATTGAAAATGTTGCAACCC+TGG + tig0021440:41502-41521 None:intergenic 35.0%
CATTATACAACTGTCTCTGA+GGG - tig0021440:41578-41597 Msa1391570:intron 35.0%
ATTATACAACTGTCTCTGAG+GGG - tig0021440:41579-41598 Msa1391570:intron 35.0%
!! AGATTAGCCTTGTAACTTCA+AGG + tig0021440:41619-41638 None:intergenic 35.0%
TGTAAAATGATGCACACTTG+AGG + tig0021440:41660-41679 None:intergenic 35.0%
! GAAGAGTAGTGATACTGATT+GGG + tig0021440:41897-41916 None:intergenic 35.0%
AGAAGAGTAGTGATACTGAT+TGG + tig0021440:41898-41917 None:intergenic 35.0%
TTGTTCAATTTCTTCTGCAG+TGG - tig0021440:41985-42004 Msa1391570:intron 35.0%
!! CCCGAAATTTTGAGTAATAC+AGG + tig0021440:42055-42074 None:intergenic 35.0%
!! ACTTGTTTAGCTTGATGACT+AGG + tig0021440:42187-42206 None:intergenic 35.0%
AAAATCGTAGAGCAAAACAG+AGG + tig0021440:42376-42395 None:intergenic 35.0%
ACAGGTATGTAAACACATAC+AGG - tig0021440:42448-42467 Msa1391570:intron 35.0%
CAGGTATGTAAACACATACA+GGG - tig0021440:42449-42468 Msa1391570:intron 35.0%
GTGCCTCACAAAATTCTAAA+AGG - tig0021440:42492-42511 Msa1391570:intron 35.0%
TTAGGGAGCAGATCATATAT+GGG + tig0021440:42642-42661 None:intergenic 35.0%
TTTAGGGAGCAGATCATATA+TGG + tig0021440:42643-42662 None:intergenic 35.0%
ACATCAGTTCTATATCTCCT+AGG + tig0021440:42689-42708 None:intergenic 35.0%
! CATCTTATGTGCCAGTTTTA+TGG - tig0021440:42729-42748 Msa1391570:intron 35.0%
AACCATCTAAGCCATAAAAC+TGG + tig0021440:42743-42762 None:intergenic 35.0%
!! TACGTTTTCTAGGGACAAAA+AGG + tig0021440:42850-42869 None:intergenic 35.0%
AATTTCTTAATACCACAGCC+TGG - tig0021440:42945-42964 Msa1391570:intron 35.0%
! TTTTAGATTGTTGATCCTGG+TGG - tig0021440:43107-43126 Msa1391570:intron 35.0%
! TCATGAGCCCTATATGATTT+TGG + tig0021440:43185-43204 None:intergenic 35.0%
!! CGAGCTTTTGAAGAATATCA+CGG - tig0021440:43214-43233 Msa1391570:intron 35.0%
! GTGTTTCTATTGATGGAAAG+GGG + tig0021440:43331-43350 None:intergenic 35.0%
! CAGACTTGTGTTTCTATTGA+TGG + tig0021440:43338-43357 None:intergenic 35.0%
CATCAATAGAAACACAAGTC+TGG - tig0021440:43336-43355 Msa1391570:intron 35.0%
TGGGGACTAAAACAAAAAGT+TGG + tig0021440:43567-43586 None:intergenic 35.0%
TTATAGGGACTAAAAGTCGA+AGG - tig0021440:43911-43930 Msa1391570:CDS 35.0%
!! TAAAAGAGACATCAAGTTGG+GGG - tig0021440:44055-44074 Msa1391570:CDS 35.0%
AATGAAAAGGCAATGATGAG+TGG + tig0021440:44163-44182 None:intergenic 35.0%
CTTCTTTCTGTAGAAACACA+AGG + tig0021440:44335-44354 None:intergenic 35.0%
! TACAGAAAGAAGTGCAAAGT+TGG - tig0021440:44343-44362 Msa1391570:intron 35.0%
TTCCTAGCAAATAGGTAACA+TGG + tig0021440:44396-44415 None:intergenic 35.0%
GAGTGAATTTCCTAGCAAAT+AGG + tig0021440:44404-44423 None:intergenic 35.0%
!! AGTCCAAGGTGTTGAATAAT+TGG + tig0021440:44460-44479 None:intergenic 35.0%
AATCGATCAAACTAGCTGAA+GGG + tig0021440:44489-44508 None:intergenic 35.0%
! AGCTAGTTTGATCGATTCTT+TGG - tig0021440:44492-44511 Msa1391570:intron 35.0%
!!! GTCAGATAACTTGTTGCTTT+TGG - tig0021440:44514-44533 Msa1391570:intron 35.0%
CATATGAGAAACCAATATGG+AGG + tig0021440:44540-44559 None:intergenic 35.0%
TGTAAATTGCAGCATTGTTG+AGG - tig0021440:44570-44589 Msa1391570:intron 35.0%
GAAAGGAGGTTAACGATATA+AGG - tig0021440:44663-44682 Msa1391570:five_prime_UTR 35.0%
ACTTCTGAATAGAGACAGTA+AGG + tig0021440:44851-44870 None:intergenic 35.0%
CAAAAGGTAAGCAGCATATA+TGG + tig0021440:44908-44927 None:intergenic 35.0%
! TACAGGCACTGTGAAAGTAT+TGG - tig0021440:37703-37722 Msa1391570:three_prime_UTR 40.0%
!! ACAGGCACTGTGAAAGTATT+GGG - tig0021440:37704-37723 Msa1391570:three_prime_UTR 40.0%
AAACGATTTGTGATTGGTGG+TGG + tig0021440:37751-37770 None:intergenic 40.0%
GCCACAAAACGATTTGTGAT+TGG + tig0021440:37757-37776 None:intergenic 40.0%
ACGCATTCCAGGTACAAAAA+GGG - tig0021440:37985-38004 Msa1391570:three_prime_UTR 40.0%
TGTACCCAAATACGGAAATG+GGG - tig0021440:38095-38114 Msa1391570:three_prime_UTR 40.0%
GAAAACCCCATTTCCGTATT+TGG + tig0021440:38103-38122 None:intergenic 40.0%
! AATACGGAAATGGGGTTTTC+TGG - tig0021440:38103-38122 Msa1391570:three_prime_UTR 40.0%
! ATACGGAAATGGGGTTTTCT+GGG - tig0021440:38104-38123 Msa1391570:three_prime_UTR 40.0%
GGACCGAAAAGAATTGTTTC+TGG - tig0021440:38410-38429 Msa1391570:intron 40.0%
!! CCGAAAAGAATTGTTTCTGG+AGG - tig0021440:38413-38432 Msa1391570:intron 40.0%
AGATGAAGTCGGACAAAGAT+TGG - tig0021440:38466-38485 Msa1391570:intron 40.0%
!! ATCCACATTGGCTTCTTCAT+GGG + tig0021440:38546-38565 None:intergenic 40.0%
!! AATCCACATTGGCTTCTTCA+TGG + tig0021440:38547-38566 None:intergenic 40.0%
! CCATAATTTTTCCAGTGGGA+GGG + tig0021440:38823-38842 None:intergenic 40.0%
CCTCCCACTGGAAAAATTAT+GGG - tig0021440:38821-38840 Msa1391570:intron 40.0%
!! AGTATTAACTTGTTGGGACC+TGG - tig0021440:39102-39121 Msa1391570:intron 40.0%
!! GTATTAACTTGTTGGGACCT+GGG - tig0021440:39103-39122 Msa1391570:intron 40.0%
GCTAAGGTTGCAACAATAAG+TGG + tig0021440:39190-39209 None:intergenic 40.0%
GTACAAAGGATACTGTTGCA+TGG - tig0021440:39265-39284 Msa1391570:intron 40.0%
TCCAACATGATTCCTGTTCT+TGG - tig0021440:39304-39323 Msa1391570:intron 40.0%
TCCAAGAACAGGAATCATGT+TGG + tig0021440:39308-39327 None:intergenic 40.0%
TCACAACTGTTTCCAAGAAC+AGG + tig0021440:39319-39338 None:intergenic 40.0%
TGTGACAATGATGTTTACGG+TGG - tig0021440:39334-39353 Msa1391570:intron 40.0%
ATGCACATTGCTAGATGAAC+AGG + tig0021440:39499-39518 None:intergenic 40.0%
TCTAGCAATGTGCATTTACC+TGG - tig0021440:39504-39523 Msa1391570:CDS 40.0%
! CACATGAACTGGTTTAGACT+TGG + tig0021440:39589-39608 None:intergenic 40.0%
TATCCCGGTTGACAAAGTAA+CGG + tig0021440:39614-39633 None:intergenic 40.0%
TAGCCACATATGCAAACCAT+TGG - tig0021440:39749-39768 Msa1391570:intron 40.0%
! TCTCCAATGGTTTGCATATG+TGG + tig0021440:39755-39774 None:intergenic 40.0%
! TTTGGAGTTAAAACCCAGAC+TGG + tig0021440:39899-39918 None:intergenic 40.0%
GTACATCATCGTATTCAAGC+CGG - tig0021440:40052-40071 Msa1391570:intron 40.0%
TACATCATCGTATTCAAGCC+GGG - tig0021440:40053-40072 Msa1391570:intron 40.0%
AGACTAGACAGGATAGGATT+AGG - tig0021440:40266-40285 Msa1391570:intron 40.0%
TCTTCTTACAACGGCATCTA+CGG + tig0021440:40386-40405 None:intergenic 40.0%
AGGAGAGTCAGGTTAAAAGA+GGG - tig0021440:40419-40438 Msa1391570:intron 40.0%
!! AACCAGTAGTTTTCTAGTGG+AGG - tig0021440:40654-40673 Msa1391570:intron 40.0%
AACCTCCACTAGAAAACTAC+TGG + tig0021440:40659-40678 None:intergenic 40.0%
GGTGTGGGGTAAAATTTCTA+TGG - tig0021440:40710-40729 Msa1391570:intron 40.0%
CTGGTTATCAGGATCTTGAA+GGG + tig0021440:40766-40785 None:intergenic 40.0%
AAGTCTTTCACCTCAACTTC+AGG + tig0021440:41156-41175 None:intergenic 40.0%
TAGAATCTCGAAGTCATCGT+AGG - tig0021440:41419-41438 Msa1391570:intron 40.0%
TTGAAAAGATTGTCCAGACC+AGG - tig0021440:41481-41500 Msa1391570:CDS 40.0%
TGAAAAGATTGTCCAGACCA+GGG - tig0021440:41482-41501 Msa1391570:CDS 40.0%
CCTCAGAGACAGTTGTATAA+TGG + tig0021440:41580-41599 None:intergenic 40.0%
CCATTATACAACTGTCTCTG+AGG - tig0021440:41577-41596 Msa1391570:intron 40.0%
CTCAGTACCTTGAAGTTACA+AGG - tig0021440:41609-41628 Msa1391570:intron 40.0%
GTCTTTCACAGTATTCCAAC+TGG - tig0021440:41683-41702 Msa1391570:CDS 40.0%
GGAACTTCAGTTTATCCAGT+TGG + tig0021440:41701-41720 None:intergenic 40.0%
! TGCAGTGGTTTTCTATGAAG+CGG - tig0021440:42000-42019 Msa1391570:intron 40.0%
GCAGCATGCTGTTATAGTTA+TGG - tig0021440:42022-42041 Msa1391570:intron 40.0%
ATGTAACGAGTAACGACTAC+AGG - tig0021440:42430-42449 Msa1391570:intron 40.0%
TATCTAGGTAATGATGCGCT+TGG + tig0021440:42534-42553 None:intergenic 40.0%
CGCATCATTACCTAGATATC+AGG - tig0021440:42536-42555 Msa1391570:intron 40.0%
!! TGCCAGTTTTATGGCTTAGA+TGG - tig0021440:42738-42757 Msa1391570:intron 40.0%
TTGGATGGAAGTTCATCTCA+GGG + tig0021440:42812-42831 None:intergenic 40.0%
TTTGGATGGAAGTTCATCTC+AGG + tig0021440:42813-42832 None:intergenic 40.0%
TGAAATTCTCACCTGGAAGA+AGG + tig0021440:43015-43034 None:intergenic 40.0%
TTGCAGTTGAAATTCTCACC+TGG + tig0021440:43022-43041 None:intergenic 40.0%
! TTGACTGGTCCGAAAGAAAA+TGG - tig0021440:43156-43175 Msa1391570:intron 40.0%
!! ATTCCTTTTGGTTAGCAGCT+AGG - tig0021440:43278-43297 Msa1391570:intron 40.0%
TTTCCTAGCTGCTAACCAAA+AGG + tig0021440:43284-43303 None:intergenic 40.0%
TAAATCTACTCCAGTGGTAC+CGG + tig0021440:43364-43383 None:intergenic 40.0%
!! CGAATGCGATTCTGGTTTAA+AGG - tig0021440:43429-43448 Msa1391570:intron 40.0%
CTTTATGGGACAGTTAGTGT+GGG - tig0021440:43467-43486 Msa1391570:intron 40.0%
GGAGGAATCAAAAGTGAAGA+TGG + tig0021440:43598-43617 None:intergenic 40.0%
!! AAAAGAGACATCAAGTTGGG+GGG - tig0021440:44056-44075 Msa1391570:CDS 40.0%
GACGTGTACACTAACATCAA+CGG + tig0021440:44236-44255 None:intergenic 40.0%
ATAGCATACCTTCTCATCAC+TGG + tig0021440:44260-44279 None:intergenic 40.0%
AGCCATGTTACCTATTTGCT+AGG - tig0021440:44391-44410 Msa1391570:intron 40.0%
GAAATTCACTCCTGAAACAC+TGG - tig0021440:44413-44432 Msa1391570:intron 40.0%
AACAACTTGTCCAGTGTTTC+AGG + tig0021440:44426-44445 None:intergenic 40.0%
ATCGATCAAACTAGCTGAAG+GGG + tig0021440:44488-44507 None:intergenic 40.0%
GAATCGATCAAACTAGCTGA+AGG + tig0021440:44490-44509 None:intergenic 40.0%
TACCTTGCACCCAAAATATG+CGG + tig0021440:44612-44631 None:intergenic 40.0%
!! ATTTTGGGTGCAAGGTAAAC+TGG - tig0021440:44615-44634 Msa1391570:intron 40.0%
AAGGTAAACTGGCATTGCTA+GGG - tig0021440:44626-44645 Msa1391570:intron 40.0%
TAACCTCCTTTCAATGTCTC+AGG + tig0021440:44655-44674 None:intergenic 40.0%
ACGATATAAGGTTGCTTCCT+CGG - tig0021440:44675-44694 Msa1391570:five_prime_UTR 40.0%
GAATGCGTCGAAAGATGTTG+AGG + tig0021440:37973-37992 None:intergenic 45.0%
AACATCTTTCGACGCATTCC+AGG - tig0021440:37974-37993 Msa1391570:three_prime_UTR 45.0%
GACGCATTCCAGGTACAAAA+AGG - tig0021440:37984-38003 Msa1391570:three_prime_UTR 45.0%
TCGGACAAAGATTGGCGTTT+AGG - tig0021440:38474-38493 Msa1391570:intron 45.0%
AGATTGGCGTTTAGGAAGCA+TGG - tig0021440:38482-38501 Msa1391570:intron 45.0%
! GATTGGCGTTTAGGAAGCAT+GGG - tig0021440:38483-38502 Msa1391570:intron 45.0%
GGTGATATGCAGATATTGCC+CGG - tig0021440:38504-38523 Msa1391570:intron 45.0%
GTGATATGCAGATATTGCCC+GGG - tig0021440:38505-38524 Msa1391570:intron 45.0%
CTGAAGAACTGCTTTGTGGA+GGG + tig0021440:38620-38639 None:intergenic 45.0%
TCATCGGTGTATTCTCTTGC+AGG + tig0021440:38702-38721 None:intergenic 45.0%
ACGCGATGCAATCTCTTCAT+CGG + tig0021440:38718-38737 None:intergenic 45.0%
TGCATCGCGTGTTGTGATTA+AGG - tig0021440:38728-38747 Msa1391570:intron 45.0%
!!! GGATATTTTGACCTCACCAC+CGG - tig0021440:38749-38768 Msa1391570:intron 45.0%
!!! TTTTGAAACAACCGGTGGTG+AGG + tig0021440:38763-38782 None:intergenic 45.0%
!! GCTTTCATGTTTTTGTCGCC+TGG - tig0021440:38795-38814 Msa1391570:intron 45.0%
CCCTCCCACTGGAAAAATTA+TGG - tig0021440:38820-38839 Msa1391570:intron 45.0%
! CCCATAATTTTTCCAGTGGG+AGG + tig0021440:38824-38843 None:intergenic 45.0%
! CAGTTATCGCCTTATCGGTT+TGG - tig0021440:38912-38931 Msa1391570:intron 45.0%
TGAAATTCCCAAAGTCTCCC+AGG + tig0021440:39123-39142 None:intergenic 45.0%
CTTTATGGCAGGGTCATGAA+GGG - tig0021440:39538-39557 Msa1391570:intron 45.0%
AAGTAACGGCTCACATGAAC+TGG + tig0021440:39600-39619 None:intergenic 45.0%
! TGAGCCGTTACTTTGTCAAC+CGG - tig0021440:39607-39626 Msa1391570:intron 45.0%
!! CAAAACAAGGGCATCTCCAA+TGG + tig0021440:39768-39787 None:intergenic 45.0%
!!! GAGATGCCCTTGTTTTGCTT+TGG - tig0021440:39771-39790 Msa1391570:intron 45.0%
ACTTCTCCATTTCAACCACC+CGG + tig0021440:40074-40093 None:intergenic 45.0%
!! TTGAAATGGAGAAGTGCCTC+AGG - tig0021440:40079-40098 Msa1391570:intron 45.0%
CTTATCGCACAAAACACCTG+AGG + tig0021440:40098-40117 None:intergenic 45.0%
ACCGGCAATGTTGTATGGTA+CGG - tig0021440:40165-40184 Msa1391570:intron 45.0%
TCCGTACCATACAACATTGC+CGG + tig0021440:40169-40188 None:intergenic 45.0%
TGTTGTATGGTACGGAGTGT+TGG - tig0021440:40173-40192 Msa1391570:intron 45.0%
! GTTGTATGGTACGGAGTGTT+GGG - tig0021440:40174-40193 Msa1391570:intron 45.0%
CGCTTACTTTACTCTCGTGT+TGG + tig0021440:40210-40229 None:intergenic 45.0%
CGAGAGTAAAGTAAGCGTAG+CGG - tig0021440:40213-40232 Msa1391570:intron 45.0%
GATGAGTGGTAAGACTAGAC+AGG - tig0021440:40255-40274 Msa1391570:intron 45.0%
GTGGTAAGACTAGACAGGAT+AGG - tig0021440:40260-40279 Msa1391570:intron 45.0%
TGACACCATTAGAGAGAGAG+TGG - tig0021440:40291-40310 Msa1391570:intron 45.0%
GACACCATTAGAGAGAGAGT+GGG - tig0021440:40292-40311 Msa1391570:intron 45.0%
ACACCATTAGAGAGAGAGTG+GGG - tig0021440:40293-40312 Msa1391570:intron 45.0%
CTTCTTACAACGGCATCTAC+GGG + tig0021440:40385-40404 None:intergenic 45.0%
AGATCAAATGGAGGAGAGTC+AGG - tig0021440:40408-40427 Msa1391570:intron 45.0%
GAGGAGAGTCAGGTTAAAAG+AGG - tig0021440:40418-40437 Msa1391570:intron 45.0%
AGTCAGGTTAAAAGAGGGTG+AGG - tig0021440:40424-40443 Msa1391570:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + tig0021440:40564-40583 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + tig0021440:40565-40584 None:intergenic 45.0%
ACCTGCAAACGACATGACTA+CGG + tig0021440:40690-40709 None:intergenic 45.0%
! CTATGGTTGATGCAGAGAGA+CGG - tig0021440:40727-40746 Msa1391570:intron 45.0%
TGATGCAGAGAGACGGATAT+TGG - tig0021440:40734-40753 Msa1391570:intron 45.0%
GCTGGTTATCAGGATCTTGA+AGG + tig0021440:40767-40786 None:intergenic 45.0%
TCGCATGTTACCTGAAGTTG+AGG - tig0021440:41143-41162 Msa1391570:intron 45.0%
! AGACTTTAGAAAGGGTGCAC+AGG - tig0021440:41170-41189 Msa1391570:intron 45.0%
AAAATGTTGCAACCCTGGTC+TGG + tig0021440:41497-41516 None:intergenic 45.0%
AAAATTTCGGGCTTACTGCC+AGG - tig0021440:42064-42083 Msa1391570:intron 45.0%
GCAACATCGACCTGATATCT+AGG + tig0021440:42549-42568 None:intergenic 45.0%
ATATCAGGTCGATGTTGCGT+AGG - tig0021440:42551-42570 Msa1391570:intron 45.0%
AGAGTTCCTTGCAACGATTC+AGG - tig0021440:42607-42626 Msa1391570:intron 45.0%
AGAAGTCCTGAATCGTTGCA+AGG + tig0021440:42616-42635 None:intergenic 45.0%
CTTAATACCACAGCCTGGTT+TGG - tig0021440:42950-42969 Msa1391570:intron 45.0%
TTACTTGCCAACCTTCTTCC+AGG - tig0021440:43001-43020 Msa1391570:CDS 45.0%
ATTCTCACCTGGAAGAAGGT+TGG + tig0021440:43011-43030 None:intergenic 45.0%
ATCCTGGTGGAATTGCAAAC+TGG - tig0021440:43120-43139 Msa1391570:intron 45.0%
TCTTTCGGACCAGTCAACAT+GGG + tig0021440:43153-43172 None:intergenic 45.0%
TTCTTTCGGACCAGTCAACA+TGG + tig0021440:43154-43173 None:intergenic 45.0%
! TAGAAACACAAGTCTGGGAC+CGG - tig0021440:43342-43361 Msa1391570:intron 45.0%
GCTTTATGGGACAGTTAGTG+TGG - tig0021440:43466-43485 Msa1391570:intron 45.0%
!! AAAGAGACATCAAGTTGGGG+GGG - tig0021440:44057-44076 Msa1391570:CDS 45.0%
TGAATCCCATTCCACAAGCA+AGG + tig0021440:44369-44388 None:intergenic 45.0%
!!! GTTGCTTTTGGCCTCCATAT+TGG - tig0021440:44526-44545 Msa1391570:intron 45.0%
CAAGGTAAACTGGCATTGCT+AGG - tig0021440:44625-44644 Msa1391570:intron 45.0%
CGATATAAGGTTGCTTCCTC+GGG - tig0021440:44676-44695 Msa1391570:five_prime_UTR 45.0%
GATATAAGGTTGCTTCCTCG+GGG - tig0021440:44677-44696 Msa1391570:five_prime_UTR 45.0%
!! TAAAAAAAAAAAATTGAAAT+TGG + tig0021440:38144-38163 None:intergenic 5.0%
!!! TTCAATTTTTTAAAAAAAAT+TGG - tig0021440:41515-41534 Msa1391570:CDS 5.0%
!!! TCAATTTTTTAAAAAAAATT+GGG - tig0021440:41516-41535 Msa1391570:CDS 5.0%
!!! AATATGAATTTTTATATTTT+TGG - tig0021440:43734-43753 Msa1391570:intron 5.0%
TTGGCTTCTTCATGGGAGGA+CGG + tig0021440:38539-38558 None:intergenic 50.0%
!! CACATTGGCTTCTTCATGGG+AGG + tig0021440:38543-38562 None:intergenic 50.0%
CTCCCATGAAGAAGCCAATG+TGG - tig0021440:38541-38560 Msa1391570:intron 50.0%
GCTGAAGAACTGCTTTGTGG+AGG + tig0021440:38621-38640 None:intergenic 50.0%
CAGGCTGAAGAACTGCTTTG+TGG + tig0021440:38624-38643 None:intergenic 50.0%
! TCTCTTCTAGAGGGTGCAAG+CGG - tig0021440:38652-38671 Msa1391570:intron 50.0%
! GGTGCAAGCGGTTTTCTGAT+TGG - tig0021440:38664-38683 Msa1391570:intron 50.0%
TATTCTCTTGCAGGAGCAGG+TGG + tig0021440:38693-38712 None:intergenic 50.0%
GTGTATTCTCTTGCAGGAGC+AGG + tig0021440:38696-38715 None:intergenic 50.0%
CCTTCATGACCCTGCCATAA+AGG + tig0021440:39540-39559 None:intergenic 50.0%
CCTTTATGGCAGGGTCATGA+AGG - tig0021440:39537-39556 Msa1391570:intron 50.0%
! GAGCCGTTACTTTGTCAACC+GGG - tig0021440:39608-39627 Msa1391570:intron 50.0%
TAACCTCATCTGGTCCAGTC+TGG - tig0021440:39882-39901 Msa1391570:intron 50.0%
AACCTCATCTGGTCCAGTCT+GGG - tig0021440:39883-39902 Msa1391570:intron 50.0%
ATCATCGTATTCAAGCCGGG+TGG - tig0021440:40056-40075 Msa1391570:intron 50.0%
TTCAAGCCGGGTGGTTGAAA+TGG - tig0021440:40065-40084 Msa1391570:intron 50.0%
GTCAGACCGGCAATGTTGTA+TGG - tig0021440:40160-40179 Msa1391570:intron 50.0%
! AAGTAAGCGTAGCGGAGATG+AGG - tig0021440:40221-40240 Msa1391570:intron 50.0%
AGGATGTTGCGTTGGATGAG+TGG - tig0021440:40241-40260 Msa1391570:intron 50.0%
CACCATTAGAGAGAGAGTGG+GGG - tig0021440:40294-40313 Msa1391570:intron 50.0%
TACCCCCACTCTCTCTCTAA+TGG + tig0021440:40299-40318 None:intergenic 50.0%
CTTATCCCACTAAGTGGGGT+CGG + tig0021440:40560-40579 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + tig0021440:40566-40585 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - tig0021440:40563-40582 Msa1391570:CDS 50.0%
CCTGCAAACGACATGACTAC+GGG + tig0021440:40689-40708 None:intergenic 50.0%
! GTAGTCATGTCGTTTGCAGG+TGG - tig0021440:40689-40708 Msa1391570:intron 50.0%
! ATGTCGTTTGCAGGTGGTGT+GGG - tig0021440:40695-40714 Msa1391570:intron 50.0%
TTTAAGGATCCTGGTCCGCA+TGG - tig0021440:41102-41121 Msa1391570:intron 50.0%
TTAAGGATCCTGGTCCGCAT+GGG - tig0021440:41103-41122 Msa1391570:intron 50.0%
TGTCCATGCTGAAGCCATGT+TGG - tig0021440:41195-41214 Msa1391570:intron 50.0%
TCTCCAACATGGCTTCAGCA+TGG + tig0021440:41201-41220 None:intergenic 50.0%
!! AATACCACAGCCTGGTTTGG+AGG - tig0021440:42953-42972 Msa1391570:intron 50.0%
!! ATACCACAGCCTGGTTTGGA+GGG - tig0021440:42954-42973 Msa1391570:intron 50.0%
CAATTCTTCCCCTCCAAACC+AGG + tig0021440:42966-42985 None:intergenic 50.0%
GACCAGTTTGCAATTCCACC+AGG + tig0021440:43125-43144 None:intergenic 50.0%
GGTCAGTAACCCATGTTGAC+TGG - tig0021440:43141-43160 Msa1391570:intron 50.0%
AGCTGAAGCGAATGCGATTC+TGG - tig0021440:43421-43440 Msa1391570:intron 50.0%
ACACGTCACCAGTGATGAGA+AGG - tig0021440:44249-44268 Msa1391570:five_prime_UTR 50.0%
!! TGCAAAGTTGGCCTTGCTTG+TGG - tig0021440:44355-44374 Msa1391570:intron 50.0%
!! AGTTGGCCTTGCTTGTGGAA+TGG - tig0021440:44360-44379 Msa1391570:intron 50.0%
!! GTTGGCCTTGCTTGTGGAAT+GGG - tig0021440:44361-44380 Msa1391570:intron 50.0%
CTGAAGGGGATTCAAGTCCA+AGG + tig0021440:44474-44493 None:intergenic 50.0%
TTGCACCCAAAATATGCGGC+CGG + tig0021440:44608-44627 None:intergenic 50.0%
GTAAACTGGCATTGCTAGGG+TGG - tig0021440:44629-44648 Msa1391570:intron 50.0%
TGGCCTGAGACATTGAAAGG+AGG - tig0021440:44649-44668 Msa1391570:intron 50.0%
TGCAGATATTGCCCGGGTCT+CGG - tig0021440:38511-38530 Msa1391570:intron 55.0%
! TTTTCCAGTGGGAGGGAACC+AGG + tig0021440:38816-38835 None:intergenic 55.0%
TGTTGGGACCTGGGAGACTT+TGG - tig0021440:39112-39131 Msa1391570:intron 55.0%
GTTGGGACCTGGGAGACTTT+GGG - tig0021440:39113-39132 Msa1391570:intron 55.0%
GTCAACCGGGATATACGCAG+TGG - tig0021440:39621-39640 Msa1391570:intron 55.0%
AACCCAGACTGGACCAGATG+AGG + tig0021440:39888-39907 None:intergenic 55.0%
CTATCGGACAGCAGTCAGAC+CGG - tig0021440:40147-40166 Msa1391570:intron 55.0%
!! GTATGGTACGGAGTGTTGGG+CGG - tig0021440:40177-40196 Msa1391570:intron 55.0%
CGGAGATGAGGATGTTGCGT+TGG - tig0021440:40233-40252 Msa1391570:intron 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + tig0021440:40552-40571 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - tig0021440:40551-40570 Msa1391570:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG - tig0021440:40552-40571 Msa1391570:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG - tig0021440:40558-40577 Msa1391570:intron 55.0%
! CCCGTAGTCATGTCGTTTGC+AGG - tig0021440:40686-40705 Msa1391570:intron 55.0%
! CATGTCGTTTGCAGGTGGTG+TGG - tig0021440:40694-40713 Msa1391570:intron 55.0%
! TGTCGTTTGCAGGTGGTGTG+GGG - tig0021440:40696-40715 Msa1391570:intron 55.0%
ATCCTGGTCCGCATGGGAAT+GGG - tig0021440:41109-41128 Msa1391570:intron 55.0%
GAGTACCTCCCATTCCCATG+CGG + tig0021440:41120-41139 None:intergenic 55.0%
! CACTTGAGGTGCTAGCTCAG+TGG + tig0021440:41646-41665 None:intergenic 55.0%
!! TACCACAGCCTGGTTTGGAG+GGG - tig0021440:42955-42974 Msa1391570:intron 55.0%
GGACAGTTAGTGTGGGACTC+TGG - tig0021440:43474-43493 Msa1391570:intron 55.0%
!! GGCCGCATATTTTGGGTGCA+AGG - tig0021440:44607-44626 Msa1391570:intron 55.0%
GGGTGGCCTGAGACATTGAA+AGG - tig0021440:44646-44665 Msa1391570:intron 55.0%
GTTGCTTCCTCGGGGATTGT+TGG - tig0021440:44685-44704 Msa1391570:five_prime_UTR 55.0%
CAGTCATCCAACAATCCCCG+AGG + tig0021440:44695-44714 None:intergenic 55.0%
CCTGGCCACTGCGTATATCC+CGG + tig0021440:39629-39648 None:intergenic 60.0%
GATCCTGGTCCGCATGGGAA+TGG - tig0021440:41108-41127 Msa1391570:intron 60.0%
TTCCCCTCCAAACCAGGCTG+TGG + tig0021440:42960-42979 None:intergenic 60.0%
! AAGTCTGGGACCGGTACCAC+TGG - tig0021440:43351-43370 Msa1391570:intron 60.0%
GTTGAGGCTTGATCGCCTGC+CGG - tig0021440:44586-44605 Msa1391570:intron 60.0%
! GCCTGCCGGCCGCATATTTT+GGG - tig0021440:44600-44619 Msa1391570:intron 60.0%
ACCCAAAATATGCGGCCGGC+AGG + tig0021440:44604-44623 None:intergenic 60.0%
CCGGGATATACGCAGTGGCC+AGG - tig0021440:39626-39645 Msa1391570:CDS 65.0%
CTCCCATTCCCATGCGGACC+AGG + tig0021440:41114-41133 None:intergenic 65.0%
CTGGTCCGCATGGGAATGGG+AGG - tig0021440:41112-41131 Msa1391570:intron 65.0%
! CGCCTGCCGGCCGCATATTT+TGG - tig0021440:44599-44618 Msa1391570:intron 65.0%
GTCGCCTGGTTCCCTCCCAC+TGG - tig0021440:38809-38828 Msa1391570:intron 70.0%
! GGAGGACGGTGCCGAGACCC+GGG + tig0021440:38525-38544 None:intergenic 75.0%
! GGGAGGACGGTGCCGAGACC+CGG + tig0021440:38526-38545 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0021440 gene 37685 44960 37685 ID=Msa1391570;Name=Msa1391570
tig0021440 mRNA 37685 44960 37685 ID=Msa1391570-mRNA-1;Parent=Msa1391570;Name=Msa1391570-mRNA-1;_AED=0.10;_eAED=0.10;_QI=392|1|1|1|0.81|0.75|12|478|396
tig0021440 exon 37685 38297 37685 ID=Msa1391570-mRNA-1:exon:12781;Parent=Msa1391570-mRNA-1
tig0021440 exon 38375 38413 38375 ID=Msa1391570-mRNA-1:exon:12780;Parent=Msa1391570-mRNA-1
tig0021440 exon 39410 39532 39410 ID=Msa1391570-mRNA-1:exon:12779;Parent=Msa1391570-mRNA-1
tig0021440 exon 39623 39682 39623 ID=Msa1391570-mRNA-1:exon:12778;Parent=Msa1391570-mRNA-1
tig0021440 exon 40560 40640 40560 ID=Msa1391570-mRNA-1:exon:12777;Parent=Msa1391570-mRNA-1
tig0021440 exon 41454 41544 41454 ID=Msa1391570-mRNA-1:exon:12776;Parent=Msa1391570-mRNA-1
tig0021440 exon 41669 41740 41669 ID=Msa1391570-mRNA-1:exon:12775;Parent=Msa1391570-mRNA-1
tig0021440 exon 41837 41937 41837 ID=Msa1391570-mRNA-1:exon:12774;Parent=Msa1391570-mRNA-1
tig0021440 exon 42998 43096 42998 ID=Msa1391570-mRNA-1:exon:12773;Parent=Msa1391570-mRNA-1
tig0021440 exon 43788 44278 43788 ID=Msa1391570-mRNA-1:exon:12772;Parent=Msa1391570-mRNA-1
tig0021440 exon 44650 44862 44650 ID=Msa1391570-mRNA-1:exon:12771;Parent=Msa1391570-mRNA-1
tig0021440 exon 44883 44960 44883 ID=Msa1391570-mRNA-1:exon:12770;Parent=Msa1391570-mRNA-1
tig0021440 five_prime_UTR 44883 44960 44883 ID=Msa1391570-mRNA-1:five_prime_utr;Parent=Msa1391570-mRNA-1
tig0021440 five_prime_UTR 44650 44862 44650 ID=Msa1391570-mRNA-1:five_prime_utr;Parent=Msa1391570-mRNA-1
tig0021440 five_prime_UTR 44178 44278 44178 ID=Msa1391570-mRNA-1:five_prime_utr;Parent=Msa1391570-mRNA-1
tig0021440 CDS 43788 44177 43788 ID=Msa1391570-mRNA-1:cds;Parent=Msa1391570-mRNA-1
tig0021440 CDS 42998 43096 42998 ID=Msa1391570-mRNA-1:cds;Parent=Msa1391570-mRNA-1
tig0021440 CDS 41837 41937 41837 ID=Msa1391570-mRNA-1:cds;Parent=Msa1391570-mRNA-1
tig0021440 CDS 41669 41740 41669 ID=Msa1391570-mRNA-1:cds;Parent=Msa1391570-mRNA-1
tig0021440 CDS 41454 41544 41454 ID=Msa1391570-mRNA-1:cds;Parent=Msa1391570-mRNA-1
tig0021440 CDS 40560 40640 40560 ID=Msa1391570-mRNA-1:cds;Parent=Msa1391570-mRNA-1
tig0021440 CDS 39623 39682 39623 ID=Msa1391570-mRNA-1:cds;Parent=Msa1391570-mRNA-1
tig0021440 CDS 39410 39532 39410 ID=Msa1391570-mRNA-1:cds;Parent=Msa1391570-mRNA-1
tig0021440 CDS 38375 38413 38375 ID=Msa1391570-mRNA-1:cds;Parent=Msa1391570-mRNA-1
tig0021440 CDS 38163 38297 38163 ID=Msa1391570-mRNA-1:cds;Parent=Msa1391570-mRNA-1
tig0021440 three_prime_UTR 37685 38162 37685 ID=Msa1391570-mRNA-1:three_prime_utr;Parent=Msa1391570-mRNA-1
Gene Sequence

>Msa1391570

ATGAAGTCGGACAAAGATTGGCGTTTAGGAAGCATGGGTGATATGCAGATATTGCCCGGGTCTCGGCACCGTCCTCCCATGAAGAAGCCAATGTGGATTATTGTCTTAGTGTTATTTGTATGCGTATTTCTAATAATTGCTTACATGTACCCTCCACAAAGCAGTTCTTCAGCCTGTTACATCTTCTCTTCTAGAGGGTGCAAGCGGTTTTCTGATTGGCTTCCACCTGCTCCTGCAAGAGAATACACCGATGAAGAGATTGCATCGCGTGTTGTGATTAAGGATATTTTGACCTCACCACCGGTTGTTTCAAAAAAATCAAAGATTGCTTTCATGTTTTTGTCGCCTGGTTCCCTCCCACTGGAAAAATTATGGGACAACTTTTTCCAAGGTCATGAAGGGAAGTTCTCAGTTTATGTGCATGCATCCAAGTCTAAACCAGTTCATGTGAGCCGTTACTTTGTCAACCGGGATATACGCAGTGGCCAGGTGGTGTGGGGTAAAATTTCTATGGTTGATGCAGAGAGACGGATATTGGCGACTGCCCTTCAAGATCCTGATAACCAGCACTTTGTTTTACTTTCTGATAGCTGTGTGCCTCTATATCATTTTGACTATATTTACAACTATTTGATGCATACAAATATCAGCTATGTTGACTGCTTTAAGGATCCTGGTCCGCATGGGAATGGGAGGTACTCAGATCGCATGTTACCTGAAGTTGAGGTGAAAGACTTTAGAAAGGGTGCACAGTGGTTTTCTATGAAGCGGCAGCATGCTGTTATAGTTATGGCCGATTACCTGTATTACTCAAAATTTCGGGCTTACTGCCAGCCTGGTTTGGAGGGGAAGAATTGCATTGCTGATGAGCATTACTTGCCAACCTTCTTCCAGATTGTTGATCCTGGTGGAATTGCAAACTGGTCAGTAACCCATGTTGACTGGTCCGAAAGAAAATGGCATCCAAAATCATATAGGGCTCATGATGTTACATACGAGCTTTTGAAGAATATCACGTCCGTTGATGTTAGTGTACACGTCACCAGTGATGAGAAGAAAGAAGTGCAAAGTTGGCCTTGCTTGTGGAATGGGATTCAGAAGCCATGTTACCTATTTGCTAGGAAATTCACTCCTGAAACACTGGACAAGTTGTTGCATCTATTTTCCAATTATTCAACACCTTGGACTTGA
Protein sequence

>Msa1391570

MKSDKDWRLGSMGDMQILPGSRHRPPMKKPMWIIVLVLFVCVFLIIAYMYPPQSSSSACYIFSSRGCKRFSDWLPPAPAREYTDEEIASRVVIKDILTSPPVVSKKSKIAFMFLSPGSLPLEKLWDNFFQGHEGKFSVYVHASKSKPVHVSRYFVNRDIRSGQVVWGKISMVDAERRILATALQDPDNQHFVLLSDSCVPLYHFDYIYNYLMHTNISYVDCFKDPGPHGNGRYSDRMLPEVEVKDFRKGAQWFSMKRQHAVIVMADYLYYSKFRAYCQPGLEGKNCIADEHYLPTFFQIVDPGGIANWSVTHVDWSERKWHPKSYRAHDVTYELLKNITSVDVSVHVTSDEKKEVQSWPCLWNGIQKPCYLFARKFTPETLDKLLHLFSNYSTPWT*