AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1376420

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1376420 MtrunA17_Chr4g0071911 99.747 396 1 0 1 396 1 396 0.0 823
Msa1376420 MtrunA17_Chr2g0298501 78.173 394 83 3 1 393 1 392 0.0 640
Msa1376420 MtrunA17_Chr2g0298511 68.262 397 108 6 1 393 1 383 0.0 543
Msa1376420 MtrunA17_Chr1g0148241 63.472 386 135 2 14 393 13 398 0.0 525
Msa1376420 MtrunA17_Chr3g0138871 59.783 368 143 4 27 390 10 376 2.09e-172 486
Msa1376420 MtrunA17_Chr1g0151841 41.667 312 156 7 83 390 83 372 4.37e-76 240
Msa1376420 MtrunA17_Chr8g0341461 38.941 321 170 6 72 387 107 406 1.26e-70 227
Msa1376420 MtrunA17_Chr1g0209531 35.606 396 193 9 32 394 33 399 7.25e-70 225
Msa1376420 MtrunA17_Chr2g0276861 41.667 288 147 3 104 389 165 433 8.03e-70 226
Msa1376420 MtrunA17_Chr5g0423131 38.739 333 166 7 63 387 81 383 1.75e-68 221
Msa1376420 MtrunA17_Chr6g0484141 36.905 336 184 6 54 385 99 410 6.86e-66 215
Msa1376420 MtrunA17_Chr5g0394961 39.172 314 165 5 76 385 121 412 1.12e-64 212
Msa1376420 MtrunA17_Chr8g0384601 38.141 312 156 10 105 387 53 356 8.22e-61 200
Msa1376420 MtrunA17_Chr3g0136091 37.061 313 155 6 76 385 111 384 2.48e-60 200
Msa1376420 MtrunA17_Chr2g0289021 36.928 306 157 11 108 385 62 359 1.94e-56 189
Msa1376420 MtrunA17_Chr4g0073871 41.593 226 110 3 163 387 10 214 9.82e-55 180
Msa1376420 MtrunA17_Chr5g0394981 41.071 224 110 3 163 385 3 205 5.51e-52 172
Msa1376420 MtrunA17_Chr1g0170231 34.106 302 153 7 106 387 62 337 1.16e-45 160
Msa1376420 MtrunA17_Chr1g0170151 30.376 372 195 11 35 385 6 334 4.08e-39 143
Msa1376420 MtrunA17_Chr3g0137661 31.429 350 205 12 51 387 42 369 5.58e-39 143
Msa1376420 MtrunA17_Chr2g0322161 30.519 308 157 10 108 385 78 358 6.72e-37 137
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1376420 AT2G19160.2 67.342 395 124 5 1 393 1 392 0.0 573
Msa1376420 AT2G19160.1 67.342 395 124 5 1 393 1 392 0.0 573
Msa1376420 AT4G30060.2 67.424 396 123 5 1 392 1 394 0.0 568
Msa1376420 AT4G30060.1 67.424 396 123 5 1 392 1 394 0.0 568
Msa1376420 AT5G57270.3 65.782 377 123 5 22 393 10 385 0.0 528
Msa1376420 AT5G57270.1 65.782 377 123 5 22 393 10 385 0.0 528
Msa1376420 AT5G57270.4 65.782 377 123 5 22 393 10 385 0.0 528
Msa1376420 AT5G57270.5 65.782 377 123 5 22 393 10 385 0.0 528
Msa1376420 AT5G57270.2 65.782 377 123 5 22 393 10 385 0.0 528
Msa1376420 AT4G25870.1 60.465 387 147 6 12 393 1 386 0.0 519
Msa1376420 AT4G31350.4 63.271 373 135 2 21 393 4 374 7.03e-176 495
Msa1376420 AT4G31350.1 63.271 373 135 2 21 393 4 374 7.03e-176 495
Msa1376420 AT4G31350.2 63.271 373 135 2 21 393 4 374 7.03e-176 495
Msa1376420 AT4G31350.3 62.735 373 132 3 21 393 4 369 7.10e-171 482
Msa1376420 AT5G25970.1 43.816 283 135 4 108 387 119 380 1.26e-75 240
Msa1376420 AT5G25970.2 43.816 283 135 4 108 387 119 380 1.26e-75 240
Msa1376420 AT5G25970.3 43.816 283 135 4 108 387 119 380 1.26e-75 240
Msa1376420 AT1G73810.1 41.745 321 154 6 74 387 117 411 1.87e-75 240
Msa1376420 AT5G11730.1 43.463 283 136 5 108 387 118 379 1.18e-72 232
Msa1376420 AT1G10280.1 41.026 312 156 7 83 389 119 407 1.20e-70 228
Msa1376420 AT5G16170.1 42.908 282 144 3 108 387 136 402 2.80e-70 227
Msa1376420 AT3G21310.1 39.088 307 164 5 83 387 91 376 6.10e-70 225
Msa1376420 AT3G21310.3 39.088 307 164 5 83 387 91 376 6.10e-70 225
Msa1376420 AT1G68390.1 38.750 320 165 7 75 387 106 401 5.05e-69 223
Msa1376420 AT1G51770.1 42.049 283 140 4 108 387 124 385 6.81e-69 223
Msa1376420 AT1G10880.1 39.159 309 160 7 83 387 95 379 3.14e-65 213
Msa1376420 AT5G14550.3 37.778 315 159 9 101 386 58 364 2.41e-63 207
Msa1376420 AT5G14550.1 37.778 315 159 9 101 386 58 364 3.23e-63 207
Msa1376420 AT1G68380.1 38.811 286 149 6 108 389 124 387 8.75e-60 199
Msa1376420 AT5G14550.2 41.418 268 129 8 101 349 58 316 7.32e-59 195
Msa1376420 AT5G14550.4 37.954 303 148 10 101 386 58 337 1.43e-55 187
Msa1376420 AT1G62305.1 36.482 307 159 10 106 385 67 364 4.43e-55 186
Msa1376420 AT1G51770.2 37.809 283 125 5 108 387 124 358 1.98e-53 182
Msa1376420 AT1G11940.1 35.161 310 160 11 106 385 72 370 2.27e-53 182
Msa1376420 AT3G52060.1 33.103 290 158 7 108 387 75 338 4.91e-49 169
Msa1376420 AT5G25330.1 35.593 295 154 11 108 387 81 354 1.38e-46 164
Msa1376420 AT1G62305.3 35.357 280 137 7 106 366 67 321 3.58e-46 161
Msa1376420 AT5G22070.1 33.016 315 149 12 106 387 69 354 6.33e-42 151
Msa1376420 AT1G11940.2 41.899 179 95 4 106 278 72 247 3.56e-40 144
Msa1376420 AT1G62305.2 31.596 307 150 11 106 385 67 340 1.76e-39 144
Msa1376420 AT4G32290.1 33.677 291 170 9 108 387 93 371 1.45e-36 137
Msa1376420 AT3G21310.2 47.059 136 70 1 108 241 115 250 7.59e-36 132

Find 154 sgRNAs with CRISPR-Local

Find 511 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCCTGCCGGCCGCATATTT+TGG 0.032461 tig0019806:+79580 Msa1376420:three_prime_UTR
ATCTTCTCTTATTAGCTTTA+AGG 0.068909 tig0019806:+76067 Msa1376420:intron
ATATTTAACATGGTAAATTT+TGG 0.112275 tig0019806:+79737 Msa1376420:three_prime_UTR
ATTGAATTGAATTAAATTTC+TGG 0.142756 tig0019806:-72811 None:intergenic
ACCTGTATTACTCAAAATTT+CGG 0.191925 tig0019806:+77033 Msa1376420:CDS
GTCAGATAACTTGTTGCTTT+TGG 0.194550 tig0019806:+79495 Msa1376420:three_prime_UTR
TCATGAGCCCTATATGATTT+TGG 0.196809 tig0019806:-78164 None:intergenic
AGTCCAAGGTGTTGAATAAT+TGG 0.203942 tig0019806:-79438 None:intergenic
TGAATTAAATTTCTGGTGTT+TGG 0.219965 tig0019806:-72804 None:intergenic
CCTGTATTACTCAAAATTTC+GGG 0.228123 tig0019806:+77034 Msa1376420:CDS
TGCATCGCGTGTTGTGATTA+AGG 0.252817 tig0019806:+73709 Msa1376420:CDS
AACTCTGTTTGTTGGTGTTT+GGG 0.264082 tig0019806:-72766 None:intergenic
GAAAGGAGGTTAACGATATA+AGG 0.282463 tig0019806:+79644 Msa1376420:three_prime_UTR
AGCTAGTTTGATCGATTCTT+TGG 0.297182 tig0019806:+79473 Msa1376420:three_prime_UTR
GGACCGAAAAGAATTGTTTC+TGG 0.297694 tig0019806:+73391 Msa1376420:five_prime_UTR
TCATCGGTGTATTCTCTTGC+AGG 0.305952 tig0019806:-73680 None:intergenic
AAAACAAAGTGCTGGTTATC+AGG 0.312813 tig0019806:-75755 None:intergenic
AACAACTTGTCCAGTGTTTC+AGG 0.313763 tig0019806:-79404 None:intergenic
TCGGACAAAGATTGGCGTTT+AGG 0.323123 tig0019806:+73455 Msa1376420:CDS
CGATATAAGGTTGCTTCCTC+GGG 0.327563 tig0019806:+79657 Msa1376420:three_prime_UTR
TTGACTGGTCCGAAAGAAAA+TGG 0.328351 tig0019806:+78138 Msa1376420:CDS
AAACTCTGTTTGTTGGTGTT+TGG 0.328816 tig0019806:-72767 None:intergenic
CAAAAGGTAAGCAGCATATA+TGG 0.335007 tig0019806:-79886 None:intergenic
TTACTTGCCAACCTTCTTCC+AGG 0.340675 tig0019806:+77983 Msa1376420:CDS
GAATTAAATTTCTGGTGTTT+GGG 0.341513 tig0019806:-72803 None:intergenic
AAGTCTTTCACCTCAACTTC+AGG 0.344606 tig0019806:-76134 None:intergenic
CTTATTAGCTTTAAGGATCC+TGG 0.362945 tig0019806:+76074 Msa1376420:intron
AAGATCAAAACTCTGTTTGT+TGG 0.375767 tig0019806:-72774 None:intergenic
AATCCACATTGGCTTCTTCA+TGG 0.376074 tig0019806:-73525 None:intergenic
CTTAATACCACAGCCTGGTT+TGG 0.380386 tig0019806:+77932 Msa1376420:intron
GAGTGAATTTCCTAGCAAAT+AGG 0.380561 tig0019806:-79382 None:intergenic
GTTGCTTCCTCGGGGATTGT+TGG 0.390519 tig0019806:+79666 Msa1376420:three_prime_UTR
TGATGCAGAGAGACGGATAT+TGG 0.394586 tig0019806:+75715 Msa1376420:CDS
ACAGGCACTGTGAAAGTATT+GGG 0.396020 tig0019806:+72684 Msa1376420:five_prime_UTR
AATGGCATCCAAAATCATAT+AGG 0.399439 tig0019806:+78156 Msa1376420:CDS
AACATCTTTCGACGCATTCC+AGG 0.404800 tig0019806:+72954 Msa1376420:five_prime_UTR
ATGGCATCCAAAATCATATA+GGG 0.407190 tig0019806:+78157 Msa1376420:CDS
TGCAGATATTGCCCGGGTCT+CGG 0.411129 tig0019806:+73492 Msa1376420:CDS
GTTGGCCTTGCTTGTGGAAT+GGG 0.412422 tig0019806:+79342 Msa1376420:CDS
ACGATATAAGGTTGCTTCCT+CGG 0.418086 tig0019806:+79656 Msa1376420:three_prime_UTR
TGAGCCGTTACTTTGTCAAC+CGG 0.425501 tig0019806:+74588 Msa1376420:CDS
TGTCATATGAGAAACCAATA+TGG 0.425967 tig0019806:-79521 None:intergenic
GGTGTGGGGTAAAATTTCTA+TGG 0.434211 tig0019806:+75691 Msa1376420:CDS
CAAATCTTGATAATAATGAT+TGG 0.437710 tig0019806:-72891 None:intergenic
TAACCTCCTTTCAATGTCTC+AGG 0.438299 tig0019806:-79633 None:intergenic
CTCCCATTCCCATGCGGACC+AGG 0.439348 tig0019806:-76092 None:intergenic
CAAAACTTTCTTAGTGAGAC+GGG 0.440455 tig0019806:-72854 None:intergenic
ATCCTGGTCCGCATGGGAAT+GGG 0.445467 tig0019806:+76090 Msa1376420:CDS
AAGTAACGGCTCACATGAAC+TGG 0.446500 tig0019806:-74578 None:intergenic
ACCCAAAATATGCGGCCGGC+AGG 0.450159 tig0019806:-79582 None:intergenic
GTCGCCTGGTTCCCTCCCAC+TGG 0.454872 tig0019806:+73790 Msa1376420:CDS
AGATGAAGTCGGACAAAGAT+TGG 0.456290 tig0019806:+73447 Msa1376420:exon
TCTAGAAGAGAAGATGTAAC+AGG 0.459145 tig0019806:-73621 None:intergenic
AAAATTTCGGGCTTACTGCC+AGG 0.466717 tig0019806:+77046 Msa1376420:CDS
CACATGAACTGGTTTAGACT+TGG 0.467869 tig0019806:-74567 None:intergenic
GATCCTGGTCCGCATGGGAA+TGG 0.469270 tig0019806:+76089 Msa1376420:CDS
TACAGGCACTGTGAAAGTAT+TGG 0.470088 tig0019806:+72683 Msa1376420:five_prime_UTR
CAAGGTAAACTGGCATTGCT+AGG 0.472797 tig0019806:+79606 Msa1376420:three_prime_UTR
CAGGCTGAAGAACTGCTTTG+TGG 0.473881 tig0019806:-73602 None:intergenic
GCAGCATGCTGTTATAGTTA+TGG 0.473890 tig0019806:+77004 Msa1376420:CDS
ATGTCGTTTGCAGGTGGTGT+GGG 0.476335 tig0019806:+75676 Msa1376420:intron
TACAGAAAGAAGTGCAAAGT+TGG 0.477720 tig0019806:+79324 Msa1376420:intron
TGAAATTCTCACCTGGAAGA+AGG 0.479456 tig0019806:-77994 None:intergenic
AATACCACAGCCTGGTTTGG+AGG 0.479852 tig0019806:+77935 Msa1376420:intron
TGAGGTGAAAGACTTTAGAA+AGG 0.485039 tig0019806:+76142 Msa1376420:CDS
GAAATTCACTCCTGAAACAC+TGG 0.486818 tig0019806:+79394 Msa1376420:CDS
GGGAGGACGGTGCCGAGACC+CGG 0.492209 tig0019806:-73504 None:intergenic
GCCACAAAACGATTTGTGAT+TGG 0.500464 tig0019806:-72734 None:intergenic
AGATTGGCGTTTAGGAAGCA+TGG 0.501553 tig0019806:+73463 Msa1376420:CDS
GTGTATTCTCTTGCAGGAGC+AGG 0.502351 tig0019806:-73674 None:intergenic
GCTGGTTATCAGGATCTTGA+AGG 0.502696 tig0019806:-75745 None:intergenic
CTTACAAGAGGCTGACATCA+AGG 0.502998 tig0019806:-79928 None:intergenic
CAATTCTTCCCCTCCAAACC+AGG 0.505839 tig0019806:-77945 None:intergenic
TGTTACATCTTCTCTTCTAG+AGG 0.506276 tig0019806:+73623 Msa1376420:CDS
AGTTGGCCTTGCTTGTGGAA+TGG 0.507523 tig0019806:+79341 Msa1376420:CDS
ATCCTGGTGGAATTGCAAAC+TGG 0.510654 tig0019806:+78102 Msa1376420:CDS
ATCCACATTGGCTTCTTCAT+GGG 0.520386 tig0019806:-73524 None:intergenic
GTTGAGGCTTGATCGCCTGC+CGG 0.522938 tig0019806:+79567 Msa1376420:three_prime_UTR
TGCAAAGTTGGCCTTGCTTG+TGG 0.527174 tig0019806:+79336 Msa1376420:CDS
CCTTTATGGCAGGGTCATGA+AGG 0.527603 tig0019806:+74518 Msa1376420:intron
TTCTTTCGGACCAGTCAACA+TGG 0.528625 tig0019806:-78133 None:intergenic
TTTCCAATTATTCAACACCT+TGG 0.532514 tig0019806:+79435 Msa1376420:CDS
AAACGATTTGTGATTGGTGG+TGG 0.535066 tig0019806:-72728 None:intergenic
ATTATTTAATTAGATGAAGT+CGG 0.535376 tig0019806:+73436 Msa1376420:exon
TGTAAATTGCAGCATTGTTG+AGG 0.537290 tig0019806:+79551 Msa1376420:three_prime_UTR
ACTTCTGAATAGAGACAGTA+AGG 0.537801 tig0019806:-79829 None:intergenic
ATATAGTCAAAATGATATAG+AGG 0.539449 tig0019806:-75893 None:intergenic
CAAATATCAGCTATGTTGAC+TGG 0.539911 tig0019806:+75936 Msa1376420:CDS
ATAGCATACCTTCTCATCAC+TGG 0.539950 tig0019806:-79238 None:intergenic
GGTGATATGCAGATATTGCC+CGG 0.545094 tig0019806:+73485 Msa1376420:CDS
TTTAAGGATCCTGGTCCGCA+TGG 0.546986 tig0019806:+76083 Msa1376420:CDS
ATACCACAGCCTGGTTTGGA+GGG 0.547665 tig0019806:+77936 Msa1376420:intron
GTTACATCTTCTCTTCTAGA+GGG 0.550311 tig0019806:+73624 Msa1376420:CDS
TCAAAACTTTCTTAGTGAGA+CGG 0.552792 tig0019806:-72855 None:intergenic
CCTGGCCACTGCGTATATCC+CGG 0.557559 tig0019806:-74607 None:intergenic
GTAAACTGGCATTGCTAGGG+TGG 0.558244 tig0019806:+79610 Msa1376420:three_prime_UTR
CAGAAAGTAAAACAAAGTGC+TGG 0.558604 tig0019806:-75763 None:intergenic
GGAGGACGGTGCCGAGACCC+GGG 0.558768 tig0019806:-73503 None:intergenic
AGACTTTAGAAAGGGTGCAC+AGG 0.558853 tig0019806:+76151 Msa1376420:CDS
ATCGATCAAACTAGCTGAAG+GGG 0.560447 tig0019806:-79466 None:intergenic
TACCACAGCCTGGTTTGGAG+GGG 0.561051 tig0019806:+77937 Msa1376420:intron
CCGGGATATACGCAGTGGCC+AGG 0.561306 tig0019806:+74607 Msa1376420:CDS
GGTCAGTAACCCATGTTGAC+TGG 0.562757 tig0019806:+78123 Msa1376420:CDS
CACATTGGCTTCTTCATGGG+AGG 0.564327 tig0019806:-73521 None:intergenic
TTCCTAGCAAATAGGTAACA+TGG 0.566551 tig0019806:-79374 None:intergenic
GAGGTGAAAGACTTTAGAAA+GGG 0.567652 tig0019806:+76143 Msa1376420:CDS
GAATCGATCAAACTAGCTGA+AGG 0.568750 tig0019806:-79468 None:intergenic
AGCCATGTTACCTATTTGCT+AGG 0.572145 tig0019806:+79372 Msa1376420:CDS
GATTGGCGTTTAGGAAGCAT+GGG 0.574416 tig0019806:+73464 Msa1376420:CDS
ATTCTCACCTGGAAGAAGGT+TGG 0.577162 tig0019806:-77990 None:intergenic
CATGTCGTTTGCAGGTGGTG+TGG 0.577255 tig0019806:+75675 Msa1376420:intron
AATCGATCAAACTAGCTGAA+GGG 0.579333 tig0019806:-79467 None:intergenic
TATTCTCTTGCAGGAGCAGG+TGG 0.582557 tig0019806:-73671 None:intergenic
TTGCACCCAAAATATGCGGC+CGG 0.585382 tig0019806:-79586 None:intergenic
AGGATTGTTTGATTTGTGTG+TGG 0.585528 tig0019806:+73370 Msa1376420:five_prime_UTR
TTAAGGATCCTGGTCCGCAT+GGG 0.588972 tig0019806:+76084 Msa1376420:CDS
CTGAAGAACTGCTTTGTGGA+GGG 0.593232 tig0019806:-73598 None:intergenic
GACCAGTTTGCAATTCCACC+AGG 0.594187 tig0019806:-78104 None:intergenic
TTAAACGTAAGAATCGAGAA+AGG 0.598539 tig0019806:-79853 None:intergenic
TGAATCCCATTCCACAAGCA+AGG 0.603455 tig0019806:-79347 None:intergenic
ACAAAACGATTTGTGATTGG+TGG 0.603835 tig0019806:-72731 None:intergenic
AAGGTAAACTGGCATTGCTA+GGG 0.604250 tig0019806:+79607 Msa1376420:three_prime_UTR
TTACAAGAGGCTGACATCAA+GGG 0.605516 tig0019806:-79927 None:intergenic
ACGCGATGCAATCTCTTCAT+CGG 0.605620 tig0019806:-73696 None:intergenic
GACGTGTACACTAACATCAA+CGG 0.607636 tig0019806:-79214 None:intergenic
TCGCATGTTACCTGAAGTTG+AGG 0.610305 tig0019806:+76124 Msa1376420:CDS
TTGGCTTCTTCATGGGAGGA+CGG 0.611072 tig0019806:-73517 None:intergenic
CTATGGTTGATGCAGAGAGA+CGG 0.614637 tig0019806:+75708 Msa1376420:CDS
CTGGTTATCAGGATCTTGAA+GGG 0.615592 tig0019806:-75744 None:intergenic
CTTTATGGCAGGGTCATGAA+GGG 0.618829 tig0019806:+74519 Msa1376420:intron
GGGTGGCCTGAGACATTGAA+AGG 0.619450 tig0019806:+79627 Msa1376420:three_prime_UTR
TACCTTGCACCCAAAATATG+CGG 0.620200 tig0019806:-79590 None:intergenic
GAATGCGTCGAAAGATGTTG+AGG 0.623192 tig0019806:-72950 None:intergenic
GTGATATGCAGATATTGCCC+GGG 0.625004 tig0019806:+73486 Msa1376420:CDS
GCTGAAGAACTGCTTTGTGG+AGG 0.626465 tig0019806:-73599 None:intergenic
CCGAAAAGAATTGTTTCTGG+AGG 0.626875 tig0019806:+73394 Msa1376420:five_prime_UTR
ACTAAGACAATAATCCACAT+TGG 0.635102 tig0019806:-73536 None:intergenic
CTGAAGGGGATTCAAGTCCA+AGG 0.638147 tig0019806:-79452 None:intergenic
TCTCTTCTAGAGGGTGCAAG+CGG 0.639407 tig0019806:+73633 Msa1376420:CDS
TCTTTCGGACCAGTCAACAT+GGG 0.643350 tig0019806:-78132 None:intergenic
TGTCGTTTGCAGGTGGTGTG+GGG 0.643747 tig0019806:+75677 Msa1376420:intron
ACACGTCACCAGTGATGAGA+AGG 0.644755 tig0019806:+79230 Msa1376420:CDS
CTGGTCCGCATGGGAATGGG+AGG 0.644851 tig0019806:+76093 Msa1376420:CDS
CTCCCATGAAGAAGCCAATG+TGG 0.646512 tig0019806:+73522 Msa1376420:CDS
GAGCCGTTACTTTGTCAACC+GGG 0.655060 tig0019806:+74589 Msa1376420:CDS
CATATGAGAAACCAATATGG+AGG 0.673924 tig0019806:-79518 None:intergenic
AAAACTTTCTTAGTGAGACG+GGG 0.674383 tig0019806:-72853 None:intergenic
CAAGAGGCTGACATCAAGGG+AGG 0.678504 tig0019806:-79924 None:intergenic
GATATAAGGTTGCTTCCTCG+GGG 0.688803 tig0019806:+79658 Msa1376420:three_prime_UTR
TATCCCGGTTGACAAAGTAA+CGG 0.706790 tig0019806:-74592 None:intergenic
TGGCCTGAGACATTGAAAGG+AGG 0.712177 tig0019806:+79630 Msa1376420:three_prime_UTR
GTCAACCGGGATATACGCAG+TGG 0.713259 tig0019806:+74602 Msa1376420:CDS
GAGTACCTCCCATTCCCATG+CGG 0.734662 tig0019806:-76098 None:intergenic
CAGTCATCCAACAATCCCCG+AGG 0.749854 tig0019806:-79673 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAATTGTTAATTTCTT+AGG + tig0019806:73163-73182 Msa1376420:intron 10.0%
!! TTATAGAATACAAATTTAAA+CGG + tig0019806:76240-76259 Msa1376420:intron 10.0%
!!! TTAAAAAATTCTAACTTTTT+TGG + tig0019806:78770-78789 Msa1376420:intron 10.0%
!!! TAAAAAATTCTAACTTTTTT+GGG + tig0019806:78771-78790 Msa1376420:intron 10.0%
!!! TATAAGTTTTATATTTAACA+TGG + tig0019806:79727-79746 Msa1376420:three_prime_UTR 10.0%
!!! AAAAAGTCTTTTAAAATTAC+AGG + tig0019806:72666-72685 Msa1376420:five_prime_UTR 15.0%
!! ATTGAATTGAATTAAATTTC+TGG - tig0019806:72814-72833 None:intergenic 15.0%
!! ATTATTTAATTAGATGAAGT+CGG + tig0019806:73436-73455 Msa1376420:exon 15.0%
!! GTCATAAATATATTTCAAAA+AGG - tig0019806:73934-73953 None:intergenic 15.0%
!! TTTATCAGTAAAAGAATAAA+TGG + tig0019806:74012-74031 Msa1376420:intron 15.0%
!!! ATTTTATCAGAAAACTAAAT+TGG + tig0019806:74127-74146 Msa1376420:intron 15.0%
!! ACATTTATGAAGATTATATT+AGG - tig0019806:74376-74395 None:intergenic 15.0%
!! TTTATAAAAATAAATCTACC+TGG - tig0019806:77067-77086 None:intergenic 15.0%
!!! CTACTATTCTTTTTTTTTTA+TGG - tig0019806:77384-77403 None:intergenic 15.0%
!! AATTATCTATAATCAGTTAT+AGG + tig0019806:77865-77884 Msa1376420:intron 15.0%
!!! AAAAAGTTGGTTTATTTATA+GGG - tig0019806:78536-78555 None:intergenic 15.0%
!!! ATGAATTTTTATATTTTTGG+TGG + tig0019806:78718-78737 Msa1376420:intron 15.0%
!!! AAAAAATTCTAACTTTTTTG+GGG + tig0019806:78772-78791 Msa1376420:intron 15.0%
!!! TTGTGATTGAAAATTTTATA+GGG + tig0019806:78877-78896 Msa1376420:intron 15.0%
!!! TGGTGTTTTATTATAAAAAA+GGG - tig0019806:78996-79015 None:intergenic 15.0%
!!! TTGGTGTTTTATTATAAAAA+AGG - tig0019806:78997-79016 None:intergenic 15.0%
!! ATCATTATAGTTATTATTTC+TGG + tig0019806:79081-79100 Msa1376420:intron 15.0%
!! AAAACTTATATAACCAAAAA+TGG - tig0019806:79717-79736 None:intergenic 15.0%
!!! ATATTTAACATGGTAAATTT+TGG + tig0019806:79737-79756 Msa1376420:three_prime_UTR 15.0%
!!! TATTTAACATGGTAAATTTT+GGG + tig0019806:79738-79757 Msa1376420:three_prime_UTR 15.0%
!!! CAAATCTTGATAATAATGAT+TGG - tig0019806:72894-72913 None:intergenic 20.0%
!! AAGATAGTATAGTAAAAATC+TGG - tig0019806:73029-73048 None:intergenic 20.0%
!!! TTTGATTTTTTTGAAACAAC+CGG - tig0019806:73752-73771 None:intergenic 20.0%
!!! TAAAGAAGTATTAACTTGTT+GGG + tig0019806:74077-74096 Msa1376420:intron 20.0%
!! TAAATTGGAATGGTTAATAA+GGG + tig0019806:74142-74161 Msa1376420:intron 20.0%
!!! TTTTTTGTTGGTAATTTCAA+TGG + tig0019806:74425-74444 Msa1376420:intron 20.0%
!! AACTCCAAATTTACTTTATT+TGG + tig0019806:74891-74910 Msa1376420:intron 20.0%
!! AATTAATCAAAACATCAACT+AGG - tig0019806:74941-74960 None:intergenic 20.0%
!!! TGCTGATTAATTAGTTTTAT+TGG + tig0019806:75824-75843 Msa1376420:intron 20.0%
!! ATATAGTCAAAATGATATAG+AGG - tig0019806:75896-75915 None:intergenic 20.0%
!!! CTTTTCAATAAGCAATTAAT+GGG - tig0019806:76450-76469 None:intergenic 20.0%
!!! TCTTTTCAATAAGCAATTAA+TGG - tig0019806:76451-76470 None:intergenic 20.0%
!!! TTTTTAAAAAAAATTGGGGA+AGG + tig0019806:76503-76522 Msa1376420:intron 20.0%
!!! TTTTAAAAAAAATTGGGGAA+GGG + tig0019806:76504-76523 Msa1376420:intron 20.0%
!!! GGAAATTTTATTAATCAAAG+TGG + tig0019806:76527-76546 Msa1376420:intron 20.0%
!! GAAAATGAATCTACTAAATT+GGG - tig0019806:76946-76965 None:intergenic 20.0%
!! TGAAAATGAATCTACTAAAT+TGG - tig0019806:76947-76966 None:intergenic 20.0%
!! CAATTTCTTTAATCTCATAA+AGG + tig0019806:77109-77128 Msa1376420:intron 20.0%
!!! ATTTAGAGCAGAAATAAATA+TGG - tig0019806:77143-77162 None:intergenic 20.0%
!! GTTTATCATTTCATTTAATG+AGG + tig0019806:77187-77206 Msa1376420:intron 20.0%
!!! TTTTGTTACTTAAGCTTAAA+TGG + tig0019806:77264-77283 Msa1376420:intron 20.0%
!!! AATACATTTTACGTTTTCTA+GGG - tig0019806:77841-77860 None:intergenic 20.0%
!!! AAATACATTTTACGTTTTCT+AGG - tig0019806:77842-77861 None:intergenic 20.0%
!! ATTTATATTTCATAGCTTCA+GGG - tig0019806:77892-77911 None:intergenic 20.0%
!! AATTTATATTTCATAGCTTC+AGG - tig0019806:77893-77912 None:intergenic 20.0%
!!! AAAAATGCAATTTTGCTTTA+TGG + tig0019806:78434-78453 Msa1376420:intron 20.0%
!!! AAAATGCAATTTTGCTTTAT+GGG + tig0019806:78435-78454 Msa1376420:intron 20.0%
!!! CAAAAAGTTGGTTTATTTAT+AGG - tig0019806:78537-78556 None:intergenic 20.0%
!!! AAATTTTCAATCACAACTTT+TGG - tig0019806:78873-78892 None:intergenic 20.0%
!!! GTTGTGATTGAAAATTTTAT+AGG + tig0019806:78876-78895 Msa1376420:intron 20.0%
!!! GAAAAGTTGGTATATTTATA+GGG + tig0019806:78945-78964 Msa1376420:intron 20.0%
!!! GTTTTATTATAAAAAAGGGA+GGG - tig0019806:78992-79011 None:intergenic 20.0%
!!! TGTTTTATTATAAAAAAGGG+AGG - tig0019806:78993-79012 None:intergenic 20.0%
!! TAATGATATTACTACAGAAA+GGG - tig0019806:79068-79087 None:intergenic 20.0%
!! ATAATGATATTACTACAGAA+AGG - tig0019806:79069-79088 None:intergenic 20.0%
!! CATAACAAGAAAAAATGAAA+AGG - tig0019806:79157-79176 None:intergenic 20.0%
!!! TTTTTTCTTGTTATGTTTTG+CGG + tig0019806:79162-79181 Msa1376420:intron 20.0%
!! TTATATAACCAAAAATGGAA+GGG - tig0019806:79712-79731 None:intergenic 20.0%
!!! ATTTAACATGGTAAATTTTG+GGG + tig0019806:79739-79758 Msa1376420:three_prime_UTR 20.0%
!!! GAATTAAATTTCTGGTGTTT+GGG - tig0019806:72806-72825 None:intergenic 25.0%
!!! TGAATTAAATTTCTGGTGTT+TGG - tig0019806:72807-72826 None:intergenic 25.0%
!! GATTGAATTTAAAGTGTAAG+AGG + tig0019806:73273-73292 Msa1376420:intron 25.0%
!! TTTTCTGCATCAATCTATTT+AGG + tig0019806:73350-73369 Msa1376420:five_prime_UTR 25.0%
!!! GTAAAGAAGTATTAACTTGT+TGG + tig0019806:74076-74095 Msa1376420:intron 25.0%
! ATCAGAAAACTAAATTGGAA+TGG + tig0019806:74132-74151 Msa1376420:intron 25.0%
! CTAAATTGGAATGGTTAATA+AGG + tig0019806:74141-74160 Msa1376420:intron 25.0%
! AAATTGGAATGGTTAATAAG+GGG + tig0019806:74143-74162 Msa1376420:intron 25.0%
! TTCAAGCAAAGCATAAATTT+CGG - tig0019806:74193-74212 None:intergenic 25.0%
! TTTATGCTTTGCTTGAAAAT+TGG + tig0019806:74196-74215 Msa1376420:intron 25.0%
!!! TATCCTGAACTTTTTTTTGT+TGG + tig0019806:74413-74432 Msa1376420:intron 25.0%
! TTACCAACAAAAAAAAGTTC+AGG - tig0019806:74419-74438 None:intergenic 25.0%
! CAAGCCAAATAAAGTAAATT+TGG - tig0019806:74898-74917 None:intergenic 25.0%
!!! GAATTCATTGCTGATTTTTT+TGG + tig0019806:74971-74990 Msa1376420:intron 25.0%
!!! TAGAAAAGTTGGTAGAAAAT+AGG + tig0019806:75310-75329 Msa1376420:intron 25.0%
!! TTTTCTAATGGTTTCTCTAA+TGG - tig0019806:75445-75464 None:intergenic 25.0%
! AACCATTAGAAAAGATTTAG+AGG + tig0019806:75452-75471 Msa1376420:intron 25.0%
! GTTCTATCAAAGATCATATT+TGG - tig0019806:75492-75511 None:intergenic 25.0%
!!! ACTTTGTTTTACTTTCTGAT+AGG + tig0019806:75768-75787 Msa1376420:CDS 25.0%
!!! ATCTTCTCTTATTAGCTTTA+AGG + tig0019806:76067-76086 Msa1376420:intron 25.0%
! AACACTTATCAACTTATATG+AGG - tig0019806:76309-76328 None:intergenic 25.0%
! AATAAGCAATTAATGGGAAT+AGG - tig0019806:76444-76463 None:intergenic 25.0%
! TTTAAAAAAAATTGGGGAAG+GGG + tig0019806:76505-76524 Msa1376420:intron 25.0%
! AAGAAAAGTTATGGAGAAAT+AGG - tig0019806:76704-76723 None:intergenic 25.0%
! TAGATTGGAAAGAAAAGTTA+TGG - tig0019806:76713-76732 None:intergenic 25.0%
! TTGAACATAAAGTCATAGAT+TGG - tig0019806:76728-76747 None:intergenic 25.0%
!!! TTTTGAGTAATACAGGTAAT+CGG - tig0019806:77030-77049 None:intergenic 25.0%
! ACCTGTATTACTCAAAATTT+CGG + tig0019806:77033-77052 Msa1376420:CDS 25.0%
! TTTAATGAGGTTATATATGC+TGG + tig0019806:77200-77219 Msa1376420:intron 25.0%
! TTAATGAGGTTATATATGCT+GGG + tig0019806:77201-77220 Msa1376420:intron 25.0%
!! AAAAGTTTCAGTGCATATTT+TGG - tig0019806:77309-77328 None:intergenic 25.0%
!!! TATCCTTTTAGAATTTTGTG+AGG - tig0019806:77480-77499 None:intergenic 25.0%
!! ATTCTAAAAGGATAGCAAAA+TGG + tig0019806:77486-77505 Msa1376420:intron 25.0%
!! GGAGTTTCTTTTGTATTTTA+GGG - tig0019806:77641-77660 None:intergenic 25.0%
!! AGGAGTTTCTTTTGTATTTT+AGG - tig0019806:77642-77661 None:intergenic 25.0%
! AATGCATAAGTTAGATTAAC+TGG - tig0019806:78066-78085 None:intergenic 25.0%
!! TACTCAATATTCATTCCTTT+TGG + tig0019806:78248-78267 Msa1376420:intron 25.0%
! GAGTAGATTTAAATACTTGT+TGG + tig0019806:78355-78374 Msa1376420:intron 25.0%
! AAAACGTATTTAACCCAAAA+AGG - tig0019806:78505-78524 None:intergenic 25.0%
!!! TTTTGGGTTAAATACGTTTT+TGG + tig0019806:78505-78524 Msa1376420:intron 25.0%
!!! AGTGAAGATGGAAATTTTTT+GGG - tig0019806:78568-78587 None:intergenic 25.0%
!!! AAGTGAAGATGGAAATTTTT+TGG - tig0019806:78569-78588 None:intergenic 25.0%
! TACATACGAGTTTACTTAAA+AGG - tig0019806:78601-78620 None:intergenic 25.0%
!! AAAAGTCTAAAACGAAAAGT+TGG + tig0019806:78932-78951 Msa1376420:intron 25.0%
!!! CGAAAAGTTGGTATATTTAT+AGG + tig0019806:78944-78963 Msa1376420:intron 25.0%
!! AAACACCAAATCAAACTTTT+AGG + tig0019806:79008-79027 Msa1376420:intron 25.0%
! ATTCTCCTAAAAGTTTGATT+TGG - tig0019806:79016-79035 None:intergenic 25.0%
! AATTAAAAGAGACATCAAGT+TGG + tig0019806:79033-79052 Msa1376420:intron 25.0%
! ATTAAAAGAGACATCAAGTT+GGG + tig0019806:79034-79053 Msa1376420:intron 25.0%
! AATGATATTACTACAGAAAG+GGG - tig0019806:79067-79086 None:intergenic 25.0%
!! ATATTTTTCCCTTCCATTTT+TGG + tig0019806:79701-79720 Msa1376420:three_prime_UTR 25.0%
! CTTATATAACCAAAAATGGA+AGG - tig0019806:79713-79732 None:intergenic 25.0%
!! TTTAACATGGTAAATTTTGG+GGG + tig0019806:79740-79759 Msa1376420:three_prime_UTR 25.0%
AAGATCAAAACTCTGTTTGT+TGG - tig0019806:72777-72796 None:intergenic 30.0%
TCAAAACTTTCTTAGTGAGA+CGG - tig0019806:72858-72877 None:intergenic 30.0%
! TCAGTTTTTGTACCCAAATA+CGG + tig0019806:73067-73086 Msa1376420:intron 30.0%
! TGTATATGTTTCTGAACATG+TGG + tig0019806:73228-73247 Msa1376420:intron 30.0%
! GTATATGTTTCTGAACATGT+GGG + tig0019806:73229-73248 Msa1376420:intron 30.0%
! GTGATTATTCATTTGCTACT+AGG + tig0019806:73251-73270 Msa1376420:intron 30.0%
ACTAAGACAATAATCCACAT+TGG - tig0019806:73539-73558 None:intergenic 30.0%
!! AACTTTTTCCAAGTAAGTGT+TGG + tig0019806:73827-73846 Msa1376420:intron 30.0%
AAATTTCTTCCAAACCGATA+AGG - tig0019806:73905-73924 None:intergenic 30.0%
CATCAACTATACTACTAAAC+TGG - tig0019806:73981-74000 None:intergenic 30.0%
CAGTTTAGTAGTATAGTTGA+TGG + tig0019806:73979-73998 Msa1376420:intron 30.0%
AGTTGTGACAATGATGTTTA+CGG + tig0019806:74312-74331 Msa1376420:intron 30.0%
TGAGTTTACATGTTCTGTTA+CGG + tig0019806:74692-74711 Msa1376420:intron 30.0%
!! GTAGCTTATGTTTTATTCAG+TGG + tig0019806:74832-74851 Msa1376420:intron 30.0%
TAATCAAAACATCAACTAGG+AGG - tig0019806:74938-74957 None:intergenic 30.0%
! TCTACCAACTTTTCTACTAT+AGG - tig0019806:75306-75325 None:intergenic 30.0%
TTGATCTACTCTTCTTACAA+CGG - tig0019806:75376-75395 None:intergenic 30.0%
TGTAAGAAGAGTAGATCAAA+TGG + tig0019806:75377-75396 Msa1376420:intron 30.0%
! GTTTCTCTAATGGTTTTCTT+AGG - tig0019806:75435-75454 None:intergenic 30.0%
! GACCTCTAAATCTTTTCTAA+TGG - tig0019806:75457-75476 None:intergenic 30.0%
AGATTTAGAGGTCAATGAAT+TGG + tig0019806:75464-75483 Msa1376420:intron 30.0%
TGATCTTTGATAGAACACTA+TGG + tig0019806:75496-75515 Msa1376420:intron 30.0%
!!! TGGTTGTTGTTGTTGTTTTT+AGG + tig0019806:75564-75583 Msa1376420:intron 30.0%
TTTACTTTCTGATAGGTACA+TGG + tig0019806:75775-75794 Msa1376420:intron 30.0%
ATCAAGCAATATTACATAGC+AGG + tig0019806:75969-75988 Msa1376420:intron 30.0%
TCAAGCAATATTACATAGCA+GGG + tig0019806:75970-75989 Msa1376420:intron 30.0%
TTAAAAAAAATTGGGGAAGG+GGG + tig0019806:76506-76525 Msa1376420:intron 30.0%
ATTAATCAAAGTGGCACTAA+TGG + tig0019806:76536-76555 Msa1376420:intron 30.0%
AGAATATCAATTCTAGTGCA+TGG + tig0019806:76759-76778 Msa1376420:intron 30.0%
! GTTGAGTCTTTTGTCATAAA+AGG + tig0019806:76787-76806 Msa1376420:intron 30.0%
CCTGTATTACTCAAAATTTC+GGG + tig0019806:77034-77053 Msa1376420:CDS 30.0%
TCTCTCTTTAGCATAGTATA+AGG + tig0019806:77234-77253 Msa1376420:intron 30.0%
! TTTTATGGCTTAGATGGTTA+AGG + tig0019806:77726-77745 Msa1376420:intron 30.0%
!!! TTTTGCTTTTCTAGTTTGGA+TGG - tig0019806:77809-77828 None:intergenic 30.0%
!!! AAGGTTTTGCTTTTCTAGTT+TGG - tig0019806:77813-77832 None:intergenic 30.0%
! TGATTTTAGATTGTTGATCC+TGG + tig0019806:78086-78105 Msa1376420:intron 30.0%
!!! TTTTGGATGCCATTTTCTTT+CGG - tig0019806:78150-78169 None:intergenic 30.0%
AATGGCATCCAAAATCATAT+AGG + tig0019806:78156-78175 Msa1376420:CDS 30.0%
ATGGCATCCAAAATCATATA+GGG + tig0019806:78157-78176 Msa1376420:CDS 30.0%
! TGTGTTTCTATTGATGGAAA+GGG - tig0019806:78314-78333 None:intergenic 30.0%
! TTGTGTTTCTATTGATGGAA+AGG - tig0019806:78315-78334 None:intergenic 30.0%
ATCAATAGAAACACAAGTCT+GGG + tig0019806:78319-78338 Msa1376420:intron 30.0%
AGTATTTAAATCTACTCCAG+TGG - tig0019806:78352-78371 None:intergenic 30.0%
! TATGACAGTTCATTCCTTTT+TGG + tig0019806:78488-78507 Msa1376420:intron 30.0%
! ATGACAGTTCATTCCTTTTT+GGG + tig0019806:78489-78508 Msa1376420:intron 30.0%
! AGTTGGTTTATTTATAGGGA+GGG - tig0019806:78532-78551 None:intergenic 30.0%
! AAGTTGGTTTATTTATAGGG+AGG - tig0019806:78533-78552 None:intergenic 30.0%
!!! GTGAAGATGGAAATTTTTTG+GGG - tig0019806:78567-78586 None:intergenic 30.0%
ATACGAGTTTACTTAAAAGG+AGG - tig0019806:78598-78617 None:intergenic 30.0%
ACACGAGTCAACTTAAAAAT+AGG + tig0019806:78845-78864 Msa1376420:intron 30.0%
CACGAGTCAACTTAAAAATA+GGG + tig0019806:78846-78865 Msa1376420:intron 30.0%
! AAGTCGAAGGAAAATTTTAG+AGG + tig0019806:78905-78924 Msa1376420:intron 30.0%
! AGTCGAAGGAAAATTTTAGA+GGG + tig0019806:78906-78925 Msa1376420:intron 30.0%
!! AAGTTGGTATATTTATAGGG+AGG + tig0019806:78948-78967 Msa1376420:intron 30.0%
! AGTTGGTATATTTATAGGGA+GGG + tig0019806:78949-78968 Msa1376420:intron 30.0%
! GGGAGGGTTAAAAATATTTT+TGG - tig0019806:78976-78995 None:intergenic 30.0%
! TTAAAAGAGACATCAAGTTG+GGG + tig0019806:79035-79054 Msa1376420:intron 30.0%
TTTGTTGAGAATGAATGAAC+TGG + tig0019806:79278-79297 Msa1376420:intron 30.0%
TTTCCAATTATTCAACACCT+TGG + tig0019806:79435-79454 Msa1376420:CDS 30.0%
TGTCATATGAGAAACCAATA+TGG - tig0019806:79524-79543 None:intergenic 30.0%
TTAAACGTAAGAATCGAGAA+AGG - tig0019806:79856-79875 None:intergenic 30.0%
GATAGAAAAACACTGACAAA+AGG - tig0019806:79905-79924 None:intergenic 30.0%
ACAAAACGATTTGTGATTGG+TGG - tig0019806:72734-72753 None:intergenic 35.0%
! ACCAATCACAAATCGTTTTG+TGG + tig0019806:72733-72752 Msa1376420:intron 35.0%
! AACTCTGTTTGTTGGTGTTT+GGG - tig0019806:72769-72788 None:intergenic 35.0%
! AAACTCTGTTTGTTGGTGTT+TGG - tig0019806:72770-72789 None:intergenic 35.0%
AAAACTTTCTTAGTGAGACG+GGG - tig0019806:72856-72875 None:intergenic 35.0%
CAAAACTTTCTTAGTGAGAC+GGG - tig0019806:72857-72876 None:intergenic 35.0%
! AAAGATTCCCTTTTTGTACC+TGG - tig0019806:72975-72994 None:intergenic 35.0%
TTTGTACCCAAATACGGAAA+TGG + tig0019806:73073-73092 Msa1376420:intron 35.0%
TTGTACCCAAATACGGAAAT+GGG + tig0019806:73074-73093 Msa1376420:intron 35.0%
AAAACCCCATTTCCGTATTT+GGG - tig0019806:73082-73101 None:intergenic 35.0%
!! AGGATTGTTTGATTTGTGTG+TGG + tig0019806:73370-73389 Msa1376420:five_prime_UTR 35.0%
! CCTCCAGAAACAATTCTTTT+CGG - tig0019806:73397-73416 None:intergenic 35.0%
TCTAGAAGAGAAGATGTAAC+AGG - tig0019806:73624-73643 None:intergenic 35.0%
TGTTACATCTTCTCTTCTAG+AGG + tig0019806:73623-73642 Msa1376420:CDS 35.0%
GTTACATCTTCTCTTCTAGA+GGG + tig0019806:73624-73643 Msa1376420:CDS 35.0%
!!! GATTTTTTTGAAACAACCGG+TGG - tig0019806:73749-73768 None:intergenic 35.0%
! TGTCCCATAATTTTTCCAGT+GGG - tig0019806:73808-73827 None:intergenic 35.0%
! TTGTCCCATAATTTTTCCAG+TGG - tig0019806:73809-73828 None:intergenic 35.0%
TAAAGTAGCCAACACTTACT+TGG - tig0019806:73838-73857 None:intergenic 35.0%
TTTCTCAGTTATCGCCTTAT+CGG + tig0019806:73888-73907 Msa1376420:intron 35.0%
CAAAGCATAAATTTCGGCTA+AGG - tig0019806:74187-74206 None:intergenic 35.0%
TTGGTAGAGTTTCTCAAACT+TGG + tig0019806:74215-74234 Msa1376420:intron 35.0%
TGGTAGAGTTTCTCAAACTT+GGG + tig0019806:74216-74235 Msa1376420:intron 35.0%
ACTTGGGTAATGATGTACAA+AGG + tig0019806:74232-74251 Msa1376420:intron 35.0%
TAATTTCAATGGCTGATACG+TGG + tig0019806:74436-74455 Msa1376420:intron 35.0%
CATAAAGGAGAAAATCTTCC+AGG - tig0019806:74506-74525 None:intergenic 35.0%
! CTGGAAGATTTTCTCCTTTA+TGG + tig0019806:74504-74523 Msa1376420:intron 35.0%
! AAGATTTTCTCCTTTATGGC+AGG + tig0019806:74508-74527 Msa1376420:intron 35.0%
! AGATTTTCTCCTTTATGGCA+GGG + tig0019806:74509-74528 Msa1376420:intron 35.0%
GTAACAAGACTATATGTACC+TGG - tig0019806:74628-74647 None:intergenic 35.0%
AGATTGCCAAAGCAAAACAA+GGG - tig0019806:74761-74780 None:intergenic 35.0%
TAGATTGCCAAAGCAAAACA+AGG - tig0019806:74762-74781 None:intergenic 35.0%
GGAATAAGTTTAACCTCATC+TGG + tig0019806:74853-74872 Msa1376420:intron 35.0%
! AAAGTACCACTTAAGCTGAA+AGG + tig0019806:75099-75118 Msa1376420:intron 35.0%
AACTTTCCTTTCAGCTTAAG+TGG - tig0019806:75108-75127 None:intergenic 35.0%
AGCTGAAAGGAAAGTTCTAT+CGG + tig0019806:75112-75131 Msa1376420:intron 35.0%
AGCACCTATAGTAGAAAAGT+TGG + tig0019806:75299-75318 Msa1376420:intron 35.0%
TGGTAGAAAATAGGCTTAGA+TGG + tig0019806:75319-75338 Msa1376420:intron 35.0%
GAAAATAGGCTTAGATGGTT+TGG + tig0019806:75324-75343 Msa1376420:intron 35.0%
AAGAAGAGTAGATCAAATGG+AGG + tig0019806:75380-75399 Msa1376420:intron 35.0%
! ACTAGAAAACTACTGGTTAC+TGG - tig0019806:75633-75652 None:intergenic 35.0%
! AGTAACCAGTAGTTTTCTAG+TGG + tig0019806:75632-75651 Msa1376420:intron 35.0%
!! AAAACAAAGTGCTGGTTATC+AGG - tig0019806:75758-75777 None:intergenic 35.0%
CAGAAAGTAAAACAAAGTGC+TGG - tig0019806:75766-75785 None:intergenic 35.0%
CAAATATCAGCTATGTTGAC+TGG + tig0019806:75936-75955 Msa1376420:CDS 35.0%
!! CTTATTAGCTTTAAGGATCC+TGG + tig0019806:76074-76093 Msa1376420:intron 35.0%
! TGAGGTGAAAGACTTTAGAA+AGG + tig0019806:76142-76161 Msa1376420:CDS 35.0%
! GAGGTGAAAGACTTTAGAAA+GGG + tig0019806:76143-76162 Msa1376420:CDS 35.0%
ACTGAATTCTATCTCCAACA+TGG - tig0019806:76193-76212 None:intergenic 35.0%
AAGTAGCTTCTACAAAAGTG+AGG + tig0019806:76346-76365 Msa1376420:intron 35.0%
AATTGAAAATGTTGCAACCC+TGG - tig0019806:76483-76502 None:intergenic 35.0%
CATTATACAACTGTCTCTGA+GGG + tig0019806:76560-76579 Msa1376420:intron 35.0%
ATTATACAACTGTCTCTGAG+GGG + tig0019806:76561-76580 Msa1376420:intron 35.0%
!! AGATTAGCCTTGTAACTTCA+AGG - tig0019806:76601-76620 None:intergenic 35.0%
TGTAAAATGATGCACACTTG+AGG - tig0019806:76642-76661 None:intergenic 35.0%
! GAAGAGTAGTGATACTGATT+GGG - tig0019806:76879-76898 None:intergenic 35.0%
AGAAGAGTAGTGATACTGAT+TGG - tig0019806:76880-76899 None:intergenic 35.0%
TTGTTCAATTTCTTCTGCAG+TGG + tig0019806:76967-76986 Msa1376420:intron 35.0%
!! CCCGAAATTTTGAGTAATAC+AGG - tig0019806:77037-77056 None:intergenic 35.0%
!! ACTTGTTTAGCTTGATGACT+AGG - tig0019806:77169-77188 None:intergenic 35.0%
AAAATCGTAGAGCAAAACAG+AGG - tig0019806:77358-77377 None:intergenic 35.0%
ACAGGTATGTAAACACATAC+AGG + tig0019806:77430-77449 Msa1376420:intron 35.0%
CAGGTATGTAAACACATACA+GGG + tig0019806:77431-77450 Msa1376420:intron 35.0%
GTGCCTCACAAAATTCTAAA+AGG + tig0019806:77474-77493 Msa1376420:intron 35.0%
TTAGGGAGCAGATCATATAT+GGG - tig0019806:77624-77643 None:intergenic 35.0%
TTTAGGGAGCAGATCATATA+TGG - tig0019806:77625-77644 None:intergenic 35.0%
ACATCAGTTCTATATCTCCT+AGG - tig0019806:77671-77690 None:intergenic 35.0%
! CATCTTATGTGCCAGTTTTA+TGG + tig0019806:77711-77730 Msa1376420:intron 35.0%
AACCATCTAAGCCATAAAAC+TGG - tig0019806:77725-77744 None:intergenic 35.0%
!! TACGTTTTCTAGGGACAAAA+AGG - tig0019806:77832-77851 None:intergenic 35.0%
AATTTCTTAATACCACAGCC+TGG + tig0019806:77927-77946 Msa1376420:intron 35.0%
! TTTTAGATTGTTGATCCTGG+TGG + tig0019806:78089-78108 Msa1376420:intron 35.0%
! TCATGAGCCCTATATGATTT+TGG - tig0019806:78167-78186 None:intergenic 35.0%
!! CGAGCTTTTGAAGAATATCA+CGG + tig0019806:78196-78215 Msa1376420:CDS 35.0%
! GTGTTTCTATTGATGGAAAG+GGG - tig0019806:78313-78332 None:intergenic 35.0%
! CAGACTTGTGTTTCTATTGA+TGG - tig0019806:78320-78339 None:intergenic 35.0%
CATCAATAGAAACACAAGTC+TGG + tig0019806:78318-78337 Msa1376420:intron 35.0%
TGGGGACTAAAACAAAAAGT+TGG - tig0019806:78549-78568 None:intergenic 35.0%
TTATAGGGACTAAAAGTCGA+AGG + tig0019806:78892-78911 Msa1376420:intron 35.0%
!! TAAAAGAGACATCAAGTTGG+GGG + tig0019806:79036-79055 Msa1376420:intron 35.0%
AATGAAAAGGCAATGATGAG+TGG - tig0019806:79144-79163 None:intergenic 35.0%
CTTCTTTCTGTAGAAACACA+AGG - tig0019806:79316-79335 None:intergenic 35.0%
! TACAGAAAGAAGTGCAAAGT+TGG + tig0019806:79324-79343 Msa1376420:intron 35.0%
TTCCTAGCAAATAGGTAACA+TGG - tig0019806:79377-79396 None:intergenic 35.0%
GAGTGAATTTCCTAGCAAAT+AGG - tig0019806:79385-79404 None:intergenic 35.0%
!! AGTCCAAGGTGTTGAATAAT+TGG - tig0019806:79441-79460 None:intergenic 35.0%
AATCGATCAAACTAGCTGAA+GGG - tig0019806:79470-79489 None:intergenic 35.0%
! AGCTAGTTTGATCGATTCTT+TGG + tig0019806:79473-79492 Msa1376420:three_prime_UTR 35.0%
!!! GTCAGATAACTTGTTGCTTT+TGG + tig0019806:79495-79514 Msa1376420:three_prime_UTR 35.0%
CATATGAGAAACCAATATGG+AGG - tig0019806:79521-79540 None:intergenic 35.0%
TGTAAATTGCAGCATTGTTG+AGG + tig0019806:79551-79570 Msa1376420:three_prime_UTR 35.0%
GAAAGGAGGTTAACGATATA+AGG + tig0019806:79644-79663 Msa1376420:three_prime_UTR 35.0%
ACTTCTGAATAGAGACAGTA+AGG - tig0019806:79832-79851 None:intergenic 35.0%
CAAAAGGTAAGCAGCATATA+TGG - tig0019806:79889-79908 None:intergenic 35.0%
! TACAGGCACTGTGAAAGTAT+TGG + tig0019806:72683-72702 Msa1376420:five_prime_UTR 40.0%
!! ACAGGCACTGTGAAAGTATT+GGG + tig0019806:72684-72703 Msa1376420:five_prime_UTR 40.0%
AAACGATTTGTGATTGGTGG+TGG - tig0019806:72731-72750 None:intergenic 40.0%
GCCACAAAACGATTTGTGAT+TGG - tig0019806:72737-72756 None:intergenic 40.0%
ACGCATTCCAGGTACAAAAA+GGG + tig0019806:72965-72984 Msa1376420:intron 40.0%
TGTACCCAAATACGGAAATG+GGG + tig0019806:73075-73094 Msa1376420:intron 40.0%
GAAAACCCCATTTCCGTATT+TGG - tig0019806:73083-73102 None:intergenic 40.0%
! AATACGGAAATGGGGTTTTC+TGG + tig0019806:73083-73102 Msa1376420:intron 40.0%
! ATACGGAAATGGGGTTTTCT+GGG + tig0019806:73084-73103 Msa1376420:intron 40.0%
GGACCGAAAAGAATTGTTTC+TGG + tig0019806:73391-73410 Msa1376420:five_prime_UTR 40.0%
!! CCGAAAAGAATTGTTTCTGG+AGG + tig0019806:73394-73413 Msa1376420:five_prime_UTR 40.0%
AGATGAAGTCGGACAAAGAT+TGG + tig0019806:73447-73466 Msa1376420:exon 40.0%
!! ATCCACATTGGCTTCTTCAT+GGG - tig0019806:73527-73546 None:intergenic 40.0%
!! AATCCACATTGGCTTCTTCA+TGG - tig0019806:73528-73547 None:intergenic 40.0%
! CCATAATTTTTCCAGTGGGA+GGG - tig0019806:73804-73823 None:intergenic 40.0%
CCTCCCACTGGAAAAATTAT+GGG + tig0019806:73802-73821 Msa1376420:CDS 40.0%
!! AGTATTAACTTGTTGGGACC+TGG + tig0019806:74083-74102 Msa1376420:intron 40.0%
!! GTATTAACTTGTTGGGACCT+GGG + tig0019806:74084-74103 Msa1376420:intron 40.0%
GCTAAGGTTGCAACAATAAG+TGG - tig0019806:74171-74190 None:intergenic 40.0%
GTACAAAGGATACTGTTGCA+TGG + tig0019806:74246-74265 Msa1376420:intron 40.0%
TCCAACATGATTCCTGTTCT+TGG + tig0019806:74285-74304 Msa1376420:intron 40.0%
TCCAAGAACAGGAATCATGT+TGG - tig0019806:74289-74308 None:intergenic 40.0%
TCACAACTGTTTCCAAGAAC+AGG - tig0019806:74300-74319 None:intergenic 40.0%
TGTGACAATGATGTTTACGG+TGG + tig0019806:74315-74334 Msa1376420:intron 40.0%
ATGCACATTGCTAGATGAAC+AGG - tig0019806:74480-74499 None:intergenic 40.0%
TCTAGCAATGTGCATTTACC+TGG + tig0019806:74485-74504 Msa1376420:intron 40.0%
! CACATGAACTGGTTTAGACT+TGG - tig0019806:74570-74589 None:intergenic 40.0%
TATCCCGGTTGACAAAGTAA+CGG - tig0019806:74595-74614 None:intergenic 40.0%
TAGCCACATATGCAAACCAT+TGG + tig0019806:74730-74749 Msa1376420:intron 40.0%
! TCTCCAATGGTTTGCATATG+TGG - tig0019806:74736-74755 None:intergenic 40.0%
! TTTGGAGTTAAAACCCAGAC+TGG - tig0019806:74880-74899 None:intergenic 40.0%
GTACATCATCGTATTCAAGC+CGG + tig0019806:75033-75052 Msa1376420:intron 40.0%
TACATCATCGTATTCAAGCC+GGG + tig0019806:75034-75053 Msa1376420:intron 40.0%
AGACTAGACAGGATAGGATT+AGG + tig0019806:75247-75266 Msa1376420:intron 40.0%
TCTTCTTACAACGGCATCTA+CGG - tig0019806:75367-75386 None:intergenic 40.0%
AGGAGAGTCAGGTTAAAAGA+GGG + tig0019806:75400-75419 Msa1376420:intron 40.0%
!! AACCAGTAGTTTTCTAGTGG+AGG + tig0019806:75635-75654 Msa1376420:intron 40.0%
AACCTCCACTAGAAAACTAC+TGG - tig0019806:75640-75659 None:intergenic 40.0%
GGTGTGGGGTAAAATTTCTA+TGG + tig0019806:75691-75710 Msa1376420:CDS 40.0%
CTGGTTATCAGGATCTTGAA+GGG - tig0019806:75747-75766 None:intergenic 40.0%
AAGTCTTTCACCTCAACTTC+AGG - tig0019806:76137-76156 None:intergenic 40.0%
TAGAATCTCGAAGTCATCGT+AGG + tig0019806:76400-76419 Msa1376420:intron 40.0%
TTGAAAAGATTGTCCAGACC+AGG + tig0019806:76462-76481 Msa1376420:intron 40.0%
TGAAAAGATTGTCCAGACCA+GGG + tig0019806:76463-76482 Msa1376420:intron 40.0%
CCTCAGAGACAGTTGTATAA+TGG - tig0019806:76562-76581 None:intergenic 40.0%
CCATTATACAACTGTCTCTG+AGG + tig0019806:76559-76578 Msa1376420:intron 40.0%
CTCAGTACCTTGAAGTTACA+AGG + tig0019806:76591-76610 Msa1376420:intron 40.0%
GTCTTTCACAGTATTCCAAC+TGG + tig0019806:76665-76684 Msa1376420:intron 40.0%
GGAACTTCAGTTTATCCAGT+TGG - tig0019806:76683-76702 None:intergenic 40.0%
! TGCAGTGGTTTTCTATGAAG+CGG + tig0019806:76982-77001 Msa1376420:intron 40.0%
GCAGCATGCTGTTATAGTTA+TGG + tig0019806:77004-77023 Msa1376420:CDS 40.0%
ATGTAACGAGTAACGACTAC+AGG + tig0019806:77412-77431 Msa1376420:intron 40.0%
TATCTAGGTAATGATGCGCT+TGG - tig0019806:77516-77535 None:intergenic 40.0%
CGCATCATTACCTAGATATC+AGG + tig0019806:77518-77537 Msa1376420:intron 40.0%
!! TGCCAGTTTTATGGCTTAGA+TGG + tig0019806:77720-77739 Msa1376420:intron 40.0%
TTGGATGGAAGTTCATCTCA+GGG - tig0019806:77794-77813 None:intergenic 40.0%
TTTGGATGGAAGTTCATCTC+AGG - tig0019806:77795-77814 None:intergenic 40.0%
TGAAATTCTCACCTGGAAGA+AGG - tig0019806:77997-78016 None:intergenic 40.0%
TTGCAGTTGAAATTCTCACC+TGG - tig0019806:78004-78023 None:intergenic 40.0%
! TTGACTGGTCCGAAAGAAAA+TGG + tig0019806:78138-78157 Msa1376420:CDS 40.0%
!! ATTCCTTTTGGTTAGCAGCT+AGG + tig0019806:78260-78279 Msa1376420:intron 40.0%
TTTCCTAGCTGCTAACCAAA+AGG - tig0019806:78266-78285 None:intergenic 40.0%
TAAATCTACTCCAGTGGTAC+CGG - tig0019806:78346-78365 None:intergenic 40.0%
!! CGAATGCGATTCTGGTTTAA+AGG + tig0019806:78411-78430 Msa1376420:intron 40.0%
CTTTATGGGACAGTTAGTGT+GGG + tig0019806:78449-78468 Msa1376420:intron 40.0%
GGAGGAATCAAAAGTGAAGA+TGG - tig0019806:78580-78599 None:intergenic 40.0%
!! AAAAGAGACATCAAGTTGGG+GGG + tig0019806:79037-79056 Msa1376420:intron 40.0%
GACGTGTACACTAACATCAA+CGG - tig0019806:79217-79236 None:intergenic 40.0%
ATAGCATACCTTCTCATCAC+TGG - tig0019806:79241-79260 None:intergenic 40.0%
AGCCATGTTACCTATTTGCT+AGG + tig0019806:79372-79391 Msa1376420:CDS 40.0%
GAAATTCACTCCTGAAACAC+TGG + tig0019806:79394-79413 Msa1376420:CDS 40.0%
AACAACTTGTCCAGTGTTTC+AGG - tig0019806:79407-79426 None:intergenic 40.0%
ATCGATCAAACTAGCTGAAG+GGG - tig0019806:79469-79488 None:intergenic 40.0%
GAATCGATCAAACTAGCTGA+AGG - tig0019806:79471-79490 None:intergenic 40.0%
TACCTTGCACCCAAAATATG+CGG - tig0019806:79593-79612 None:intergenic 40.0%
!! ATTTTGGGTGCAAGGTAAAC+TGG + tig0019806:79596-79615 Msa1376420:three_prime_UTR 40.0%
AAGGTAAACTGGCATTGCTA+GGG + tig0019806:79607-79626 Msa1376420:three_prime_UTR 40.0%
TAACCTCCTTTCAATGTCTC+AGG - tig0019806:79636-79655 None:intergenic 40.0%
ACGATATAAGGTTGCTTCCT+CGG + tig0019806:79656-79675 Msa1376420:three_prime_UTR 40.0%
GAATGCGTCGAAAGATGTTG+AGG - tig0019806:72953-72972 None:intergenic 45.0%
AACATCTTTCGACGCATTCC+AGG + tig0019806:72954-72973 Msa1376420:five_prime_UTR 45.0%
GACGCATTCCAGGTACAAAA+AGG + tig0019806:72964-72983 Msa1376420:intron 45.0%
TCGGACAAAGATTGGCGTTT+AGG + tig0019806:73455-73474 Msa1376420:CDS 45.0%
AGATTGGCGTTTAGGAAGCA+TGG + tig0019806:73463-73482 Msa1376420:CDS 45.0%
! GATTGGCGTTTAGGAAGCAT+GGG + tig0019806:73464-73483 Msa1376420:CDS 45.0%
GGTGATATGCAGATATTGCC+CGG + tig0019806:73485-73504 Msa1376420:CDS 45.0%
GTGATATGCAGATATTGCCC+GGG + tig0019806:73486-73505 Msa1376420:CDS 45.0%
CTGAAGAACTGCTTTGTGGA+GGG - tig0019806:73601-73620 None:intergenic 45.0%
TCATCGGTGTATTCTCTTGC+AGG - tig0019806:73683-73702 None:intergenic 45.0%
ACGCGATGCAATCTCTTCAT+CGG - tig0019806:73699-73718 None:intergenic 45.0%
TGCATCGCGTGTTGTGATTA+AGG + tig0019806:73709-73728 Msa1376420:CDS 45.0%
!!! GGATATTTTGACCTCACCAC+CGG + tig0019806:73730-73749 Msa1376420:CDS 45.0%
!!! TTTTGAAACAACCGGTGGTG+AGG - tig0019806:73744-73763 None:intergenic 45.0%
!! GCTTTCATGTTTTTGTCGCC+TGG + tig0019806:73776-73795 Msa1376420:CDS 45.0%
CCCTCCCACTGGAAAAATTA+TGG + tig0019806:73801-73820 Msa1376420:CDS 45.0%
! CCCATAATTTTTCCAGTGGG+AGG - tig0019806:73805-73824 None:intergenic 45.0%
! CAGTTATCGCCTTATCGGTT+TGG + tig0019806:73893-73912 Msa1376420:intron 45.0%
TGAAATTCCCAAAGTCTCCC+AGG - tig0019806:74104-74123 None:intergenic 45.0%
CTTTATGGCAGGGTCATGAA+GGG + tig0019806:74519-74538 Msa1376420:intron 45.0%
AAGTAACGGCTCACATGAAC+TGG - tig0019806:74581-74600 None:intergenic 45.0%
! TGAGCCGTTACTTTGTCAAC+CGG + tig0019806:74588-74607 Msa1376420:CDS 45.0%
!! CAAAACAAGGGCATCTCCAA+TGG - tig0019806:74749-74768 None:intergenic 45.0%
!!! GAGATGCCCTTGTTTTGCTT+TGG + tig0019806:74752-74771 Msa1376420:intron 45.0%
ACTTCTCCATTTCAACCACC+CGG - tig0019806:75055-75074 None:intergenic 45.0%
!! TTGAAATGGAGAAGTGCCTC+AGG + tig0019806:75060-75079 Msa1376420:intron 45.0%
CTTATCGCACAAAACACCTG+AGG - tig0019806:75079-75098 None:intergenic 45.0%
ACCGGCAATGTTGTATGGTA+CGG + tig0019806:75146-75165 Msa1376420:intron 45.0%
TCCGTACCATACAACATTGC+CGG - tig0019806:75150-75169 None:intergenic 45.0%
TGTTGTATGGTACGGAGTGT+TGG + tig0019806:75154-75173 Msa1376420:intron 45.0%
! GTTGTATGGTACGGAGTGTT+GGG + tig0019806:75155-75174 Msa1376420:intron 45.0%
CGCTTACTTTACTCTCGTGT+TGG - tig0019806:75191-75210 None:intergenic 45.0%
CGAGAGTAAAGTAAGCGTAG+CGG + tig0019806:75194-75213 Msa1376420:intron 45.0%
GATGAGTGGTAAGACTAGAC+AGG + tig0019806:75236-75255 Msa1376420:intron 45.0%
GTGGTAAGACTAGACAGGAT+AGG + tig0019806:75241-75260 Msa1376420:intron 45.0%
TGACACCATTAGAGAGAGAG+TGG + tig0019806:75272-75291 Msa1376420:intron 45.0%
GACACCATTAGAGAGAGAGT+GGG + tig0019806:75273-75292 Msa1376420:intron 45.0%
ACACCATTAGAGAGAGAGTG+GGG + tig0019806:75274-75293 Msa1376420:intron 45.0%
CTTCTTACAACGGCATCTAC+GGG - tig0019806:75366-75385 None:intergenic 45.0%
AGATCAAATGGAGGAGAGTC+AGG + tig0019806:75389-75408 Msa1376420:intron 45.0%
GAGGAGAGTCAGGTTAAAAG+AGG + tig0019806:75399-75418 Msa1376420:intron 45.0%
AGTCAGGTTAAAAGAGGGTG+AGG + tig0019806:75405-75424 Msa1376420:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - tig0019806:75545-75564 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - tig0019806:75546-75565 None:intergenic 45.0%
ACCTGCAAACGACATGACTA+CGG - tig0019806:75671-75690 None:intergenic 45.0%
! CTATGGTTGATGCAGAGAGA+CGG + tig0019806:75708-75727 Msa1376420:CDS 45.0%
TGATGCAGAGAGACGGATAT+TGG + tig0019806:75715-75734 Msa1376420:CDS 45.0%
GCTGGTTATCAGGATCTTGA+AGG - tig0019806:75748-75767 None:intergenic 45.0%
TCGCATGTTACCTGAAGTTG+AGG + tig0019806:76124-76143 Msa1376420:CDS 45.0%
! AGACTTTAGAAAGGGTGCAC+AGG + tig0019806:76151-76170 Msa1376420:CDS 45.0%
AAAATGTTGCAACCCTGGTC+TGG - tig0019806:76478-76497 None:intergenic 45.0%
AAAATTTCGGGCTTACTGCC+AGG + tig0019806:77046-77065 Msa1376420:CDS 45.0%
GCAACATCGACCTGATATCT+AGG - tig0019806:77531-77550 None:intergenic 45.0%
ATATCAGGTCGATGTTGCGT+AGG + tig0019806:77533-77552 Msa1376420:intron 45.0%
AGAGTTCCTTGCAACGATTC+AGG + tig0019806:77589-77608 Msa1376420:intron 45.0%
AGAAGTCCTGAATCGTTGCA+AGG - tig0019806:77598-77617 None:intergenic 45.0%
CTTAATACCACAGCCTGGTT+TGG + tig0019806:77932-77951 Msa1376420:intron 45.0%
TTACTTGCCAACCTTCTTCC+AGG + tig0019806:77983-78002 Msa1376420:CDS 45.0%
ATTCTCACCTGGAAGAAGGT+TGG - tig0019806:77993-78012 None:intergenic 45.0%
ATCCTGGTGGAATTGCAAAC+TGG + tig0019806:78102-78121 Msa1376420:CDS 45.0%
TCTTTCGGACCAGTCAACAT+GGG - tig0019806:78135-78154 None:intergenic 45.0%
TTCTTTCGGACCAGTCAACA+TGG - tig0019806:78136-78155 None:intergenic 45.0%
! TAGAAACACAAGTCTGGGAC+CGG + tig0019806:78324-78343 Msa1376420:intron 45.0%
GCTTTATGGGACAGTTAGTG+TGG + tig0019806:78448-78467 Msa1376420:intron 45.0%
!! AAAGAGACATCAAGTTGGGG+GGG + tig0019806:79038-79057 Msa1376420:intron 45.0%
TGAATCCCATTCCACAAGCA+AGG - tig0019806:79350-79369 None:intergenic 45.0%
!!! GTTGCTTTTGGCCTCCATAT+TGG + tig0019806:79507-79526 Msa1376420:three_prime_UTR 45.0%
CAAGGTAAACTGGCATTGCT+AGG + tig0019806:79606-79625 Msa1376420:three_prime_UTR 45.0%
CGATATAAGGTTGCTTCCTC+GGG + tig0019806:79657-79676 Msa1376420:three_prime_UTR 45.0%
GATATAAGGTTGCTTCCTCG+GGG + tig0019806:79658-79677 Msa1376420:three_prime_UTR 45.0%
!! AAAAAAAAAAAAATTGAAAT+TGG - tig0019806:73124-73143 None:intergenic 5.0%
!!! TCAATTTTTTTAAAAAAAAT+TGG + tig0019806:76497-76516 Msa1376420:intron 5.0%
!!! CAATTTTTTTAAAAAAAATT+GGG + tig0019806:76498-76517 Msa1376420:intron 5.0%
!!! AATTTTTTTAAAAAAAATTG+GGG + tig0019806:76499-76518 Msa1376420:intron 5.0%
!!! AATATGAATTTTTATATTTT+TGG + tig0019806:78715-78734 Msa1376420:intron 5.0%
TTGGCTTCTTCATGGGAGGA+CGG - tig0019806:73520-73539 None:intergenic 50.0%
!! CACATTGGCTTCTTCATGGG+AGG - tig0019806:73524-73543 None:intergenic 50.0%
CTCCCATGAAGAAGCCAATG+TGG + tig0019806:73522-73541 Msa1376420:CDS 50.0%
GCTGAAGAACTGCTTTGTGG+AGG - tig0019806:73602-73621 None:intergenic 50.0%
CAGGCTGAAGAACTGCTTTG+TGG - tig0019806:73605-73624 None:intergenic 50.0%
! TCTCTTCTAGAGGGTGCAAG+CGG + tig0019806:73633-73652 Msa1376420:CDS 50.0%
! GGTGCAAGCGGTTTTCTGAT+TGG + tig0019806:73645-73664 Msa1376420:CDS 50.0%
TATTCTCTTGCAGGAGCAGG+TGG - tig0019806:73674-73693 None:intergenic 50.0%
GTGTATTCTCTTGCAGGAGC+AGG - tig0019806:73677-73696 None:intergenic 50.0%
CCTTCATGACCCTGCCATAA+AGG - tig0019806:74521-74540 None:intergenic 50.0%
CCTTTATGGCAGGGTCATGA+AGG + tig0019806:74518-74537 Msa1376420:intron 50.0%
! GAGCCGTTACTTTGTCAACC+GGG + tig0019806:74589-74608 Msa1376420:CDS 50.0%
TAACCTCATCTGGTCCAGTC+TGG + tig0019806:74863-74882 Msa1376420:intron 50.0%
AACCTCATCTGGTCCAGTCT+GGG + tig0019806:74864-74883 Msa1376420:intron 50.0%
ATCATCGTATTCAAGCCGGG+TGG + tig0019806:75037-75056 Msa1376420:intron 50.0%
TTCAAGCCGGGTGGTTGAAA+TGG + tig0019806:75046-75065 Msa1376420:intron 50.0%
GTCAGACCGGCAATGTTGTA+TGG + tig0019806:75141-75160 Msa1376420:intron 50.0%
! AAGTAAGCGTAGCGGAGATG+AGG + tig0019806:75202-75221 Msa1376420:intron 50.0%
AGGATGTTGCGTTGGATGAG+TGG + tig0019806:75222-75241 Msa1376420:intron 50.0%
CACCATTAGAGAGAGAGTGG+GGG + tig0019806:75275-75294 Msa1376420:intron 50.0%
TACCCCCACTCTCTCTCTAA+TGG - tig0019806:75280-75299 None:intergenic 50.0%
CTTATCCCACTAAGTGGGGT+CGG - tig0019806:75541-75560 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - tig0019806:75547-75566 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG + tig0019806:75544-75563 Msa1376420:intron 50.0%
CCTGCAAACGACATGACTAC+GGG - tig0019806:75670-75689 None:intergenic 50.0%
! GTAGTCATGTCGTTTGCAGG+TGG + tig0019806:75670-75689 Msa1376420:intron 50.0%
! ATGTCGTTTGCAGGTGGTGT+GGG + tig0019806:75676-75695 Msa1376420:intron 50.0%
TTTAAGGATCCTGGTCCGCA+TGG + tig0019806:76083-76102 Msa1376420:CDS 50.0%
TTAAGGATCCTGGTCCGCAT+GGG + tig0019806:76084-76103 Msa1376420:CDS 50.0%
TGTCCATGCTGAAGCCATGT+TGG + tig0019806:76176-76195 Msa1376420:intron 50.0%
TCTCCAACATGGCTTCAGCA+TGG - tig0019806:76182-76201 None:intergenic 50.0%
!! AATACCACAGCCTGGTTTGG+AGG + tig0019806:77935-77954 Msa1376420:intron 50.0%
!! ATACCACAGCCTGGTTTGGA+GGG + tig0019806:77936-77955 Msa1376420:intron 50.0%
CAATTCTTCCCCTCCAAACC+AGG - tig0019806:77948-77967 None:intergenic 50.0%
GACCAGTTTGCAATTCCACC+AGG - tig0019806:78107-78126 None:intergenic 50.0%
GGTCAGTAACCCATGTTGAC+TGG + tig0019806:78123-78142 Msa1376420:CDS 50.0%
AGCTGAAGCGAATGCGATTC+TGG + tig0019806:78403-78422 Msa1376420:intron 50.0%
ACACGTCACCAGTGATGAGA+AGG + tig0019806:79230-79249 Msa1376420:CDS 50.0%
!! TGCAAAGTTGGCCTTGCTTG+TGG + tig0019806:79336-79355 Msa1376420:CDS 50.0%
!! AGTTGGCCTTGCTTGTGGAA+TGG + tig0019806:79341-79360 Msa1376420:CDS 50.0%
!! GTTGGCCTTGCTTGTGGAAT+GGG + tig0019806:79342-79361 Msa1376420:CDS 50.0%
CTGAAGGGGATTCAAGTCCA+AGG - tig0019806:79455-79474 None:intergenic 50.0%
TTGCACCCAAAATATGCGGC+CGG - tig0019806:79589-79608 None:intergenic 50.0%
GTAAACTGGCATTGCTAGGG+TGG + tig0019806:79610-79629 Msa1376420:three_prime_UTR 50.0%
TGGCCTGAGACATTGAAAGG+AGG + tig0019806:79630-79649 Msa1376420:three_prime_UTR 50.0%
TGCAGATATTGCCCGGGTCT+CGG + tig0019806:73492-73511 Msa1376420:CDS 55.0%
! TTTTCCAGTGGGAGGGAACC+AGG - tig0019806:73797-73816 None:intergenic 55.0%
TGTTGGGACCTGGGAGACTT+TGG + tig0019806:74093-74112 Msa1376420:intron 55.0%
GTTGGGACCTGGGAGACTTT+GGG + tig0019806:74094-74113 Msa1376420:intron 55.0%
GTCAACCGGGATATACGCAG+TGG + tig0019806:74602-74621 Msa1376420:CDS 55.0%
AACCCAGACTGGACCAGATG+AGG - tig0019806:74869-74888 None:intergenic 55.0%
CTATCGGACAGCAGTCAGAC+CGG + tig0019806:75128-75147 Msa1376420:intron 55.0%
!! GTATGGTACGGAGTGTTGGG+CGG + tig0019806:75158-75177 Msa1376420:intron 55.0%
CGGAGATGAGGATGTTGCGT+TGG + tig0019806:75214-75233 Msa1376420:intron 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - tig0019806:75533-75552 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + tig0019806:75532-75551 Msa1376420:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG + tig0019806:75533-75552 Msa1376420:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + tig0019806:75539-75558 Msa1376420:intron 55.0%
! CCCGTAGTCATGTCGTTTGC+AGG + tig0019806:75667-75686 Msa1376420:intron 55.0%
! CATGTCGTTTGCAGGTGGTG+TGG + tig0019806:75675-75694 Msa1376420:intron 55.0%
! TGTCGTTTGCAGGTGGTGTG+GGG + tig0019806:75677-75696 Msa1376420:intron 55.0%
ATCCTGGTCCGCATGGGAAT+GGG + tig0019806:76090-76109 Msa1376420:CDS 55.0%
GAGTACCTCCCATTCCCATG+CGG - tig0019806:76101-76120 None:intergenic 55.0%
! CACTTGAGGTGCTAGCTCAG+TGG - tig0019806:76628-76647 None:intergenic 55.0%
!! TACCACAGCCTGGTTTGGAG+GGG + tig0019806:77937-77956 Msa1376420:intron 55.0%
GGACAGTTAGTGTGGGACTC+TGG + tig0019806:78456-78475 Msa1376420:intron 55.0%
!! GGCCGCATATTTTGGGTGCA+AGG + tig0019806:79588-79607 Msa1376420:three_prime_UTR 55.0%
GGGTGGCCTGAGACATTGAA+AGG + tig0019806:79627-79646 Msa1376420:three_prime_UTR 55.0%
GTTGCTTCCTCGGGGATTGT+TGG + tig0019806:79666-79685 Msa1376420:three_prime_UTR 55.0%
CAGTCATCCAACAATCCCCG+AGG - tig0019806:79676-79695 None:intergenic 55.0%
CCTGGCCACTGCGTATATCC+CGG - tig0019806:74610-74629 None:intergenic 60.0%
GATCCTGGTCCGCATGGGAA+TGG + tig0019806:76089-76108 Msa1376420:CDS 60.0%
TTCCCCTCCAAACCAGGCTG+TGG - tig0019806:77942-77961 None:intergenic 60.0%
! AAGTCTGGGACCGGTACCAC+TGG + tig0019806:78333-78352 Msa1376420:intron 60.0%
GTTGAGGCTTGATCGCCTGC+CGG + tig0019806:79567-79586 Msa1376420:three_prime_UTR 60.0%
! GCCTGCCGGCCGCATATTTT+GGG + tig0019806:79581-79600 Msa1376420:three_prime_UTR 60.0%
ACCCAAAATATGCGGCCGGC+AGG - tig0019806:79585-79604 None:intergenic 60.0%
CCGGGATATACGCAGTGGCC+AGG + tig0019806:74607-74626 Msa1376420:CDS 65.0%
CTCCCATTCCCATGCGGACC+AGG - tig0019806:76095-76114 None:intergenic 65.0%
CTGGTCCGCATGGGAATGGG+AGG + tig0019806:76093-76112 Msa1376420:CDS 65.0%
! CGCCTGCCGGCCGCATATTT+TGG + tig0019806:79580-79599 Msa1376420:three_prime_UTR 65.0%
GTCGCCTGGTTCCCTCCCAC+TGG + tig0019806:73790-73809 Msa1376420:CDS 70.0%
! GGAGGACGGTGCCGAGACCC+GGG - tig0019806:73506-73525 None:intergenic 75.0%
! GGGAGGACGGTGCCGAGACC+CGG - tig0019806:73507-73526 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0019806 gene 72665 79941 72665 ID=Msa1376420;Name=Msa1376420
tig0019806 mRNA 72665 79941 72665 ID=Msa1376420-mRNA-1;Parent=Msa1376420;Name=Msa1376420-mRNA-1;_AED=0.10;_eAED=0.10;_QI=392|1|1|1|0.81|0.75|12|478|396
tig0019806 exon 72665 72742 72665 ID=Msa1376420-mRNA-1:exon:5105;Parent=Msa1376420-mRNA-1
tig0019806 exon 72763 72975 72763 ID=Msa1376420-mRNA-1:exon:5106;Parent=Msa1376420-mRNA-1
tig0019806 exon 73348 73838 73348 ID=Msa1376420-mRNA-1:exon:5107;Parent=Msa1376420-mRNA-1
tig0019806 exon 74530 74628 74530 ID=Msa1376420-mRNA-1:exon:5108;Parent=Msa1376420-mRNA-1
tig0019806 exon 75689 75789 75689 ID=Msa1376420-mRNA-1:exon:5109;Parent=Msa1376420-mRNA-1
tig0019806 exon 75886 75957 75886 ID=Msa1376420-mRNA-1:exon:5110;Parent=Msa1376420-mRNA-1
tig0019806 exon 76082 76172 76082 ID=Msa1376420-mRNA-1:exon:5111;Parent=Msa1376420-mRNA-1
tig0019806 exon 76987 77067 76987 ID=Msa1376420-mRNA-1:exon:5112;Parent=Msa1376420-mRNA-1
tig0019806 exon 77945 78004 77945 ID=Msa1376420-mRNA-1:exon:5113;Parent=Msa1376420-mRNA-1
tig0019806 exon 78095 78217 78095 ID=Msa1376420-mRNA-1:exon:5114;Parent=Msa1376420-mRNA-1
tig0019806 exon 79213 79251 79213 ID=Msa1376420-mRNA-1:exon:5115;Parent=Msa1376420-mRNA-1
tig0019806 exon 79329 79941 79329 ID=Msa1376420-mRNA-1:exon:5116;Parent=Msa1376420-mRNA-1
tig0019806 five_prime_UTR 72665 72742 72665 ID=Msa1376420-mRNA-1:five_prime_utr;Parent=Msa1376420-mRNA-1
tig0019806 five_prime_UTR 72763 72975 72763 ID=Msa1376420-mRNA-1:five_prime_utr;Parent=Msa1376420-mRNA-1
tig0019806 five_prime_UTR 73348 73448 73348 ID=Msa1376420-mRNA-1:five_prime_utr;Parent=Msa1376420-mRNA-1
tig0019806 CDS 73449 73838 73449 ID=Msa1376420-mRNA-1:cds;Parent=Msa1376420-mRNA-1
tig0019806 CDS 74530 74628 74530 ID=Msa1376420-mRNA-1:cds;Parent=Msa1376420-mRNA-1
tig0019806 CDS 75689 75789 75689 ID=Msa1376420-mRNA-1:cds;Parent=Msa1376420-mRNA-1
tig0019806 CDS 75886 75957 75886 ID=Msa1376420-mRNA-1:cds;Parent=Msa1376420-mRNA-1
tig0019806 CDS 76082 76172 76082 ID=Msa1376420-mRNA-1:cds;Parent=Msa1376420-mRNA-1
tig0019806 CDS 76987 77067 76987 ID=Msa1376420-mRNA-1:cds;Parent=Msa1376420-mRNA-1
tig0019806 CDS 77945 78004 77945 ID=Msa1376420-mRNA-1:cds;Parent=Msa1376420-mRNA-1
tig0019806 CDS 78095 78217 78095 ID=Msa1376420-mRNA-1:cds;Parent=Msa1376420-mRNA-1
tig0019806 CDS 79213 79251 79213 ID=Msa1376420-mRNA-1:cds;Parent=Msa1376420-mRNA-1
tig0019806 CDS 79329 79463 79329 ID=Msa1376420-mRNA-1:cds;Parent=Msa1376420-mRNA-1
tig0019806 three_prime_UTR 79464 79941 79464 ID=Msa1376420-mRNA-1:three_prime_utr;Parent=Msa1376420-mRNA-1
Gene Sequence

>Msa1376420

ATGAAGTCGGACAAAGATTGGCGTTTAGGAAGCATGGGTGATATGCAGATATTGCCCGGGTCTCGGCACCGTCCTCCCATGAAGAAGCCAATGTGGATTATTGTCTTAGTGTTATTTGTATGCGTATTTCTAATAATTGCTTACATGTACCCTCCACAAAGCAGTTCTTCAGCCTGTTACATCTTCTCTTCTAGAGGGTGCAAGCGGTTTTCTGATTGGCTTCCACCTGCTCCTGCAAGAGAATACACCGATGAAGAGATTGCATCGCGTGTTGTGATTAAGGATATTTTGACCTCACCACCGGTTGTTTCAAAAAAATCAAAGATTGCTTTCATGTTTTTGTCGCCTGGTTCCCTCCCACTGGAAAAATTATGGGACAACTTTTTCCAAGGTCATGAAGGGAAGTTCTCAGTTTATGTGCATGCATCCAAGTCTAAACCAGTTCATGTGAGCCGTTACTTTGTCAACCGGGATATACGCAGTGGCCAGGTGGTGTGGGGTAAAATTTCTATGGTTGATGCAGAGAGACGGATATTGGCGACTGCCCTTCAAGATCCTGATAACCAGCACTTTGTTTTACTTTCTGATAGCTGTGTGCCTCTATATCATTTTGACTATATTTACAACTATTTGATGCATACAAATATCAGCTATGTTGACTGCTTTAAGGATCCTGGTCCGCATGGGAATGGGAGGTACTCAGATCGCATGTTACCTGAAGTTGAGGTGAAAGACTTTAGAAAGGGTGCACAGTGGTTTTCTATGAAGCGGCAGCATGCTGTTATAGTTATGGCCGATTACCTGTATTACTCAAAATTTCGGGCTTACTGCCAGCCTGGTTTGGAGGGGAAGAATTGCATTGCTGATGAGCATTACTTGCCAACCTTCTTCCAGATTGTTGATCCTGGTGGAATTGCAAACTGGTCAGTAACCCATGTTGACTGGTCCGAAAGAAAATGGCATCCAAAATCATATAGGGCTCATGATGTTACATACGAGCTTTTGAAGAATATCACGTCCGTTGATGTTAGTGTACACGTCACCAGTGATGAGAAGAAAGAAGTGCAAAGTTGGCCTTGCTTGTGGAATGGGATTCAGAAGCCATGTTACCTATTTGCTAGGAAATTCACTCCTGAAACACTGGACAAGTTGTTGCATCTATTTTCCAATTATTCAACACCTTGGACTTGA
Protein sequence

>Msa1376420

MKSDKDWRLGSMGDMQILPGSRHRPPMKKPMWIIVLVLFVCVFLIIAYMYPPQSSSSACYIFSSRGCKRFSDWLPPAPAREYTDEEIASRVVIKDILTSPPVVSKKSKIAFMFLSPGSLPLEKLWDNFFQGHEGKFSVYVHASKSKPVHVSRYFVNRDIRSGQVVWGKISMVDAERRILATALQDPDNQHFVLLSDSCVPLYHFDYIYNYLMHTNISYVDCFKDPGPHGNGRYSDRMLPEVEVKDFRKGAQWFSMKRQHAVIVMADYLYYSKFRAYCQPGLEGKNCIADEHYLPTFFQIVDPGGIANWSVTHVDWSERKWHPKSYRAHDVTYELLKNITSVDVSVHVTSDEKKEVQSWPCLWNGIQKPCYLFARKFTPETLDKLLHLFSNYSTPWT*