Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0235970 | XP_003593782.1 | 100.000 | 314 | 0 | 0 | 1 | 314 | 1 | 314 | 0.0 | 638 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0235970 | sp|Q8L940|PDX13_ARATH | 91.083 | 314 | 23 | 1 | 1 | 314 | 1 | 309 | 0.0 | 585 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0235970 | Q45FF2 | 100.000 | 314 | 0 | 0 | 1 | 314 | 1 | 314 | 0.0 | 638 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0093950 | Msa0235970 | 0.818849 | 1.581760e-52 | -8.615850e-47 |
| Msa0101500 | Msa0235970 | 0.838012 | 3.701382e-57 | -8.615850e-47 |
| Msa0123000 | Msa0235970 | 0.804550 | 2.046738e-49 | -8.615850e-47 |
| Msa0167500 | Msa0235970 | 0.824562 | 7.544938e-54 | -8.615850e-47 |
| Msa0220400 | Msa0235970 | 0.801886 | 7.286140e-49 | -8.615850e-47 |
| Msa0235970 | Msa0274310 | 0.906231 | 1.850658e-80 | -8.615850e-47 |
| Msa0235970 | Msa0552090 | 0.821997 | 2.997771e-53 | -8.615850e-47 |
| Msa0235970 | Msa0564920 | 0.804005 | 2.658994e-49 | -8.615850e-47 |
| Msa0235970 | Msa0606640 | 0.830079 | 3.593536e-55 | -8.615850e-47 |
| Msa0235970 | Msa0618020 | 0.863917 | 1.767520e-64 | -8.615850e-47 |
| Msa0235970 | Msa0657060 | 0.841287 | 5.207059e-58 | -8.615850e-47 |
| Msa0235970 | Msa0686860 | 0.854680 | 1.047476e-61 | -8.615850e-47 |
| Msa0235970 | Msa0701040 | 0.847364 | 1.211893e-59 | -8.615850e-47 |
| Msa0235970 | Msa0713900 | 0.801391 | 9.204936e-49 | -8.615850e-47 |
| Msa0235970 | Msa0922100 | 0.821544 | 3.816730e-53 | -8.615850e-47 |
| Msa0235970 | Msa0994250 | 0.803721 | 3.045008e-49 | -8.615850e-47 |
| Msa0235970 | Msa1221780 | 0.851214 | 1.026708e-60 | -8.615850e-47 |
| Msa0235970 | Msa1254580 | -0.813923 | 2.001780e-51 | -8.615850e-47 |
| Msa0235970 | Msa1333900 | 0.817956 | 2.520256e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0235970 | MtrunA17_Chr2g0284561 | 100.000 | 314 | 0 | 0 | 1 | 314 | 1 | 314 | 0.0 | 638 |
| Msa0235970 | MtrunA17_Chr4g0004581 | 57.616 | 302 | 105 | 4 | 1 | 301 | 1 | 280 | 1.28e-119 | 345 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0235970 | AT5G01410.2 | 91.083 | 314 | 23 | 1 | 1 | 314 | 1 | 309 | 0.0 | 585 |
| Msa0235970 | AT5G01410.1 | 91.083 | 314 | 23 | 1 | 1 | 314 | 1 | 309 | 0.0 | 585 |
| Msa0235970 | AT2G38230.1 | 86.943 | 314 | 36 | 2 | 1 | 314 | 1 | 309 | 0.0 | 554 |
| Msa0235970 | AT3G16050.1 | 62.939 | 313 | 107 | 3 | 2 | 313 | 9 | 313 | 3.64e-144 | 409 |
| Msa0235970 | AT2G38210.1 | 84.146 | 82 | 9 | 1 | 1 | 82 | 1 | 78 | 7.35e-39 | 132 |
Find 92 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACAGTGATCCTGAGATTT+TGG | 0.180703 | 2_2:+8826354 | Msa0235970:CDS |
| CGCTTGCGCCGTCATGGCCT+TGG | 0.264353 | 2_2:+8825697 | Msa0235970:CDS |
| TCGTCATGTGCGTTCTGTTT+TGG | 0.284365 | 2_2:+8826066 | Msa0235970:CDS |
| GACGGAGAATGGGGAGGATT+TGG | 0.292034 | 2_2:-8825588 | None:intergenic |
| CCAGCAGCAAACTGCACAAC+AGG | 0.295714 | 2_2:-8826199 | None:intergenic |
| GGAGGATTTGGTGGTGGTGG+AGG | 0.317871 | 2_2:-8825576 | None:intergenic |
| CCTGTTGTGCAGTTTGCTGC+TGG | 0.331604 | 2_2:+8826199 | Msa0235970:CDS |
| TGGGGAGGATTTGGTGGTGG+TGG | 0.346825 | 2_2:-8825579 | None:intergenic |
| GGTGGTGGTGGAGGTTGTTT+CGG | 0.349577 | 2_2:-8825567 | None:intergenic |
| TGGCAGCACCTTCGCGAATT+CGG | 0.351479 | 2_2:-8825994 | None:intergenic |
| ATGTTGAGAGGTTTGCTAAT+AGG | 0.372798 | 2_2:+8826434 | Msa0235970:CDS |
| CCTTGAGCGCGGATGTCGGC+GGG | 0.383754 | 2_2:-8825728 | None:intergenic |
| AGGCCGACTTTGACGGAGAA+TGG | 0.394093 | 2_2:-8825599 | None:intergenic |
| GGCCGACTTTGACGGAGAAT+GGG | 0.401997 | 2_2:-8825598 | None:intergenic |
| GGCTGAGGTTAGTTGTGGAT+TGG | 0.407923 | 2_2:+8826375 | Msa0235970:CDS |
| GGCCATGACGGCGCAAGCGC+CGG | 0.420801 | 2_2:-8825693 | None:intergenic |
| TTCAGCGATACGAGCTTGTT+CGG | 0.421940 | 2_2:-8825666 | None:intergenic |
| TCCAGTACCAGCTTCACCTT+TGG | 0.422451 | 2_2:-8826026 | None:intergenic |
| TTCACCTTTGGTACGAATCA+TGG | 0.424363 | 2_2:-8826014 | None:intergenic |
| TTGATTTCTTTGATGAGTTG+AGG | 0.426615 | 2_2:-8825773 | None:intergenic |
| TGATTTCTTTGATGAGTTGA+GGG | 0.448026 | 2_2:-8825772 | None:intergenic |
| GCTGAGGTTAGTTGTGGATT+GGG | 0.457039 | 2_2:+8826376 | Msa0235970:CDS |
| CCCCTCACCATGGAAGGATC+TGG | 0.462611 | 2_2:+8825512 | None:intergenic |
| TGTGGCGACACCGGCGGATG+CGG | 0.465593 | 2_2:+8826225 | Msa0235970:CDS |
| ACCAAAGGTGAAGCTGGTAC+TGG | 0.471439 | 2_2:+8826025 | Msa0235970:CDS |
| TCTGGAGTCGTAACCGTCTA+CGG | 0.474266 | 2_2:+8825530 | Msa0235970:CDS |
| GTCTGCATAACAAGATCATA+AGG | 0.475122 | 2_2:-8826157 | None:intergenic |
| GAATGGGGAGGATTTGGTGG+TGG | 0.483771 | 2_2:-8825582 | None:intergenic |
| ATCATCAACGCCGCATCCGC+CGG | 0.489068 | 2_2:-8826235 | None:intergenic |
| GAAATGACCGATACGAGCTT+TGG | 0.495581 | 2_2:-8825822 | None:intergenic |
| ATACGAGCTTTGGCCATGAC+AGG | 0.496509 | 2_2:-8825812 | None:intergenic |
| GCCTTGAGCGCGGATGTCGG+CGG | 0.499487 | 2_2:-8825729 | None:intergenic |
| GGAGAATGGGGAGGATTTGG+TGG | 0.500498 | 2_2:-8825585 | None:intergenic |
| TGTGTTTAAGAGTGGGGATC+CGG | 0.500830 | 2_2:+8826294 | Msa0235970:CDS |
| ATGATGCAGCTTGGTTGTGA+TGG | 0.500907 | 2_2:+8826253 | Msa0235970:CDS |
| CCCGCCGACATCCGCGCTCA+AGG | 0.502035 | 2_2:+8825728 | Msa0235970:CDS |
| GCTCCGCGGCGGTGTCATCA+TGG | 0.504945 | 2_2:+8825631 | Msa0235970:CDS |
| TTGAGCGAGGCCGACTTTGA+CGG | 0.505616 | 2_2:-8825606 | None:intergenic |
| GGTTCTGGTGTGTTTAAGAG+TGG | 0.505931 | 2_2:+8826286 | Msa0235970:CDS |
| AGCCGGCGCTTGCGCCGTCA+TGG | 0.506739 | 2_2:+8825691 | Msa0235970:CDS |
| GGATTGGGCGAAGCTATGGT+TGG | 0.507893 | 2_2:+8826391 | Msa0235970:CDS |
| AGCCACAAACAAAAGGAATA+CGG | 0.508056 | 2_2:-8825946 | None:intergenic |
| AATCGATTCCGAGAGATTCG+AGG | 0.508977 | 2_2:-8825859 | None:intergenic |
| TTCTTTGATGAGTTGAGGGT+CGG | 0.509203 | 2_2:-8825768 | None:intergenic |
| TTGTGGATTGGGCGAAGCTA+TGG | 0.514120 | 2_2:+8826387 | Msa0235970:CDS |
| GTTGTGCAGTTTGCTGCTGG+TGG | 0.515305 | 2_2:+8826202 | Msa0235970:CDS |
| GTTCTGGTGTGTTTAAGAGT+GGG | 0.517289 | 2_2:+8826287 | Msa0235970:CDS |
| GCCGCCTTGAGCGCGGATGT+CGG | 0.518062 | 2_2:-8825732 | None:intergenic |
| TGTGATTGTCTTCATCAGCT+AGG | 0.518201 | 2_2:-8825907 | None:intergenic |
| GCTCGTATCGCTGAAGAAGC+CGG | 0.522227 | 2_2:+8825674 | Msa0235970:CDS |
| CTAACCTCAGCCAAAATCTC+AGG | 0.523396 | 2_2:-8826364 | None:intergenic |
| CGCCGTCACCATCCCTGTCA+TGG | 0.523650 | 2_2:+8825799 | Msa0235970:CDS |
| TTACGACAGCCACAAACAAA+AGG | 0.529847 | 2_2:-8825953 | None:intergenic |
| GAGGAATATGGATGAAGATG+AGG | 0.532603 | 2_2:+8826105 | Msa0235970:CDS |
| TGCTGGTGGTGTGGCGACAC+CGG | 0.534597 | 2_2:+8826216 | Msa0235970:CDS |
| GTTTGTGGCTGTCGTAACCT+TGG | 0.541430 | 2_2:+8825959 | Msa0235970:CDS |
| ATTCGTACCAAAGGTGAAGC+TGG | 0.543654 | 2_2:+8826019 | Msa0235970:CDS |
| GATTGGGCGAAGCTATGGTT+GGG | 0.544098 | 2_2:+8826392 | Msa0235970:CDS |
| GGCCATGACAGGGATGGTGA+CGG | 0.547780 | 2_2:-8825801 | None:intergenic |
| GCTCAGATCCTCGAATCTCT+CGG | 0.559594 | 2_2:+8825851 | Msa0235970:CDS |
| GTGATTGTCTTCATCAGCTA+GGG | 0.560345 | 2_2:-8825906 | None:intergenic |
| GTTATGCAGACTAAGCAACT+TGG | 0.570305 | 2_2:+8826169 | Msa0235970:CDS |
| GAGTGCACCGTTGCCGTAGA+CGG | 0.571653 | 2_2:-8825543 | None:intergenic |
| GTCGTAACCGTCTACGGCAA+CGG | 0.572232 | 2_2:+8825536 | Msa0235970:CDS |
| TTCTGGTGTGTTTAAGAGTG+GGG | 0.572350 | 2_2:+8826288 | Msa0235970:CDS |
| GCGGCGTTGATGATGCAGCT+TGG | 0.576055 | 2_2:+8826244 | Msa0235970:CDS |
| GAGCAACGCCGCCTTGAGCG+CGG | 0.578549 | 2_2:-8825739 | None:intergenic |
| GACACGCTCCAAGGCCATGA+CGG | 0.586431 | 2_2:-8825705 | None:intergenic |
| GTCATGGCCAAAGCTCGTAT+CGG | 0.604175 | 2_2:+8825815 | Msa0235970:CDS |
| CTCGCTCAAATGCTCCGCGG+CGG | 0.607268 | 2_2:+8825620 | Msa0235970:CDS |
| TGACTGATCATAATGTTGAG+AGG | 0.607276 | 2_2:+8826422 | Msa0235970:CDS |
| GCCGACTTTGACGGAGAATG+GGG | 0.610613 | 2_2:-8825597 | None:intergenic |
| GGGATCCGGCGAAAAGAGCG+AGG | 0.611909 | 2_2:+8826308 | Msa0235970:CDS |
| GCAGTTTGCTGCTGGTGGTG+TGG | 0.612599 | 2_2:+8826207 | Msa0235970:CDS |
| GACTTTGACGGAGAATGGGG+AGG | 0.614803 | 2_2:-8825594 | None:intergenic |
| TACGAGCTTTGGCCATGACA+GGG | 0.619481 | 2_2:-8825811 | None:intergenic |
| AGCTTTGGCCATGACAGGGA+TGG | 0.623887 | 2_2:-8825807 | None:intergenic |
| TCCCCATTCTCCGTCAAAGT+CGG | 0.626781 | 2_2:+8825596 | Msa0235970:CDS |
| GTCGGCGGGGACACGCTCCA+AGG | 0.628734 | 2_2:-8825714 | None:intergenic |
| GCCGACATCCGCGCTCAAGG+CGG | 0.633654 | 2_2:+8825731 | Msa0235970:CDS |
| TACGACTCCAGATCCTTCCA+TGG | 0.634536 | 2_2:-8825519 | None:intergenic |
| GCTGCCATGATTCGTACCAA+AGG | 0.643185 | 2_2:+8826010 | Msa0235970:CDS |
| CGCCGCGGAGCATTTGAGCG+AGG | 0.643339 | 2_2:-8825619 | None:intergenic |
| GCTCTTCGCCGAATTCGCGA+AGG | 0.649209 | 2_2:+8825986 | Msa0235970:CDS |
| TGCAGACTAAGCAACTTGGA+AGG | 0.649819 | 2_2:+8826173 | Msa0235970:CDS |
| CATGACAGGGATGGTGACGG+CGG | 0.652699 | 2_2:-8825798 | None:intergenic |
| TGGTGGTGTGGCGACACCGG+CGG | 0.656866 | 2_2:+8826219 | Msa0235970:CDS |
| CTTGAGCGCGGATGTCGGCG+GGG | 0.673216 | 2_2:-8825727 | None:intergenic |
| GGATCCGGCGAAAAGAGCGA+GGG | 0.694405 | 2_2:+8826309 | Msa0235970:CDS |
| TTCGGCGAAGAGCTTCACCA+AGG | 0.695720 | 2_2:-8825976 | None:intergenic |
| GGCCTCGCTCAAATGCTCCG+CGG | 0.749927 | 2_2:+8825617 | Msa0235970:CDS |
| CGTCCATGATGACACCGCCG+CGG | 0.762873 | 2_2:-8825634 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCACTTTTGCTAAGAAAAT+TGG | + | chr2_2:8826130-8826149 | Msa0235970:CDS | 25.0% |
| !!! | TTCACTTTTGCTAAGAAAAT+TGG | + | chr2_2:8826130-8826149 | Msa0235970:CDS | 25.0% |
| ! | TGATTTCTTTGATGAGTTGA+GGG | - | chr2_2:8825775-8825794 | None:intergenic | 30.0% |
| TTGATTTCTTTGATGAGTTG+AGG | - | chr2_2:8825776-8825795 | None:intergenic | 30.0% | |
| !! | TTCTGTTTTGGGTGATATTA+GGG | + | chr2_2:8826078-8826097 | Msa0235970:CDS | 30.0% |
| !!! | TATTAGGGTTTTGAGGAATA+TGG | + | chr2_2:8826093-8826112 | Msa0235970:CDS | 30.0% |
| ! | TGATTTCTTTGATGAGTTGA+GGG | - | chr2_2:8825775-8825794 | None:intergenic | 30.0% |
| TTGATTTCTTTGATGAGTTG+AGG | - | chr2_2:8825776-8825795 | None:intergenic | 30.0% | |
| !! | TTCTGTTTTGGGTGATATTA+GGG | + | chr2_2:8826078-8826097 | Msa0235970:CDS | 30.0% |
| !!! | TATTAGGGTTTTGAGGAATA+TGG | + | chr2_2:8826093-8826112 | Msa0235970:CDS | 30.0% |
| !! | TTCCGTATTCCTTTTGTTTG+TGG | + | chr2_2:8825944-8825963 | Msa0235970:CDS | 35.0% |
| AGCCACAAACAAAAGGAATA+CGG | - | chr2_2:8825949-8825968 | None:intergenic | 35.0% | |
| !! | GTTCTGTTTTGGGTGATATT+AGG | + | chr2_2:8826077-8826096 | Msa0235970:CDS | 35.0% |
| GTCTGCATAACAAGATCATA+AGG | - | chr2_2:8826160-8826179 | None:intergenic | 35.0% | |
| ! | TTACAGTGATCCTGAGATTT+TGG | + | chr2_2:8826354-8826373 | Msa0235970:CDS | 35.0% |
| TGACTGATCATAATGTTGAG+AGG | + | chr2_2:8826422-8826441 | Msa0235970:CDS | 35.0% | |
| !! | ATGTTGAGAGGTTTGCTAAT+AGG | + | chr2_2:8826434-8826453 | Msa0235970:CDS | 35.0% |
| !! | TTCCGTATTCCTTTTGTTTG+TGG | + | chr2_2:8825944-8825963 | Msa0235970:CDS | 35.0% |
| AGCCACAAACAAAAGGAATA+CGG | - | chr2_2:8825949-8825968 | None:intergenic | 35.0% | |
| !! | GTTCTGTTTTGGGTGATATT+AGG | + | chr2_2:8826077-8826096 | Msa0235970:CDS | 35.0% |
| GTCTGCATAACAAGATCATA+AGG | - | chr2_2:8826160-8826179 | None:intergenic | 35.0% | |
| ! | TTACAGTGATCCTGAGATTT+TGG | + | chr2_2:8826354-8826373 | Msa0235970:CDS | 35.0% |
| TGACTGATCATAATGTTGAG+AGG | + | chr2_2:8826422-8826441 | Msa0235970:CDS | 35.0% | |
| !! | ATGTTGAGAGGTTTGCTAAT+AGG | + | chr2_2:8826434-8826453 | Msa0235970:CDS | 35.0% |
| ! | TTCTTTGATGAGTTGAGGGT+CGG | - | chr2_2:8825771-8825790 | None:intergenic | 40.0% |
| GTGATTGTCTTCATCAGCTA+GGG | - | chr2_2:8825909-8825928 | None:intergenic | 40.0% | |
| TGTGATTGTCTTCATCAGCT+AGG | - | chr2_2:8825910-8825929 | None:intergenic | 40.0% | |
| TTACGACAGCCACAAACAAA+AGG | - | chr2_2:8825956-8825975 | None:intergenic | 40.0% | |
| TTCACCTTTGGTACGAATCA+TGG | - | chr2_2:8826017-8826036 | None:intergenic | 40.0% | |
| ! | TGGGTGATATTAGGGTTTTG+AGG | + | chr2_2:8826086-8826105 | Msa0235970:CDS | 40.0% |
| GAGGAATATGGATGAAGATG+AGG | + | chr2_2:8826105-8826124 | Msa0235970:CDS | 40.0% | |
| GTTATGCAGACTAAGCAACT+TGG | + | chr2_2:8826169-8826188 | Msa0235970:CDS | 40.0% | |
| !! | GGTTGTGATGGTGTTTTTGT+TGG | + | chr2_2:8826265-8826284 | Msa0235970:CDS | 40.0% |
| !!! | GATGGTGTTTTTGTTGGTTC+TGG | + | chr2_2:8826271-8826290 | Msa0235970:CDS | 40.0% |
| GTTCTGGTGTGTTTAAGAGT+GGG | + | chr2_2:8826287-8826306 | Msa0235970:CDS | 40.0% | |
| TTCTGGTGTGTTTAAGAGTG+GGG | + | chr2_2:8826288-8826307 | Msa0235970:CDS | 40.0% | |
| !!! | ATTTTGGCTGAGGTTAGTTG+TGG | + | chr2_2:8826370-8826389 | Msa0235970:CDS | 40.0% |
| ! | TTCTTTGATGAGTTGAGGGT+CGG | - | chr2_2:8825771-8825790 | None:intergenic | 40.0% |
| GTGATTGTCTTCATCAGCTA+GGG | - | chr2_2:8825909-8825928 | None:intergenic | 40.0% | |
| TGTGATTGTCTTCATCAGCT+AGG | - | chr2_2:8825910-8825929 | None:intergenic | 40.0% | |
| TTACGACAGCCACAAACAAA+AGG | - | chr2_2:8825956-8825975 | None:intergenic | 40.0% | |
| TTCACCTTTGGTACGAATCA+TGG | - | chr2_2:8826017-8826036 | None:intergenic | 40.0% | |
| ! | TGGGTGATATTAGGGTTTTG+AGG | + | chr2_2:8826086-8826105 | Msa0235970:CDS | 40.0% |
| GAGGAATATGGATGAAGATG+AGG | + | chr2_2:8826105-8826124 | Msa0235970:CDS | 40.0% | |
| GTTATGCAGACTAAGCAACT+TGG | + | chr2_2:8826169-8826188 | Msa0235970:CDS | 40.0% | |
| !! | GGTTGTGATGGTGTTTTTGT+TGG | + | chr2_2:8826265-8826284 | Msa0235970:CDS | 40.0% |
| !!! | GATGGTGTTTTTGTTGGTTC+TGG | + | chr2_2:8826271-8826290 | Msa0235970:CDS | 40.0% |
| GTTCTGGTGTGTTTAAGAGT+GGG | + | chr2_2:8826287-8826306 | Msa0235970:CDS | 40.0% | |
| TTCTGGTGTGTTTAAGAGTG+GGG | + | chr2_2:8826288-8826307 | Msa0235970:CDS | 40.0% | |
| !!! | ATTTTGGCTGAGGTTAGTTG+TGG | + | chr2_2:8826370-8826389 | Msa0235970:CDS | 40.0% |
| ! | TTCAGCGATACGAGCTTGTT+CGG | - | chr2_2:8825669-8825688 | None:intergenic | 45.0% |
| GAAATGACCGATACGAGCTT+TGG | - | chr2_2:8825825-8825844 | None:intergenic | 45.0% | |
| ! | AATCGATTCCGAGAGATTCG+AGG | - | chr2_2:8825862-8825881 | None:intergenic | 45.0% |
| ATTCGTACCAAAGGTGAAGC+TGG | + | chr2_2:8826019-8826038 | Msa0235970:CDS | 45.0% | |
| ! | TCGTCATGTGCGTTCTGTTT+TGG | + | chr2_2:8826066-8826085 | Msa0235970:CDS | 45.0% |
| ! | CGTCATGTGCGTTCTGTTTT+GGG | + | chr2_2:8826067-8826086 | Msa0235970:CDS | 45.0% |
| TGCAGACTAAGCAACTTGGA+AGG | + | chr2_2:8826173-8826192 | Msa0235970:CDS | 45.0% | |
| ATGATGCAGCTTGGTTGTGA+TGG | + | chr2_2:8826253-8826272 | Msa0235970:CDS | 45.0% | |
| ! | GGTTCTGGTGTGTTTAAGAG+TGG | + | chr2_2:8826286-8826305 | Msa0235970:CDS | 45.0% |
| TGTGTTTAAGAGTGGGGATC+CGG | + | chr2_2:8826294-8826313 | Msa0235970:CDS | 45.0% | |
| !!! | TGATCCTGAGATTTTGGCTG+AGG | + | chr2_2:8826360-8826379 | Msa0235970:CDS | 45.0% |
| CTAACCTCAGCCAAAATCTC+AGG | - | chr2_2:8826367-8826386 | None:intergenic | 45.0% | |
| ! | GCTGAGGTTAGTTGTGGATT+GGG | + | chr2_2:8826376-8826395 | Msa0235970:CDS | 45.0% |
| ! | TTCAGCGATACGAGCTTGTT+CGG | - | chr2_2:8825669-8825688 | None:intergenic | 45.0% |
| GAAATGACCGATACGAGCTT+TGG | - | chr2_2:8825825-8825844 | None:intergenic | 45.0% | |
| ! | AATCGATTCCGAGAGATTCG+AGG | - | chr2_2:8825862-8825881 | None:intergenic | 45.0% |
| ATTCGTACCAAAGGTGAAGC+TGG | + | chr2_2:8826019-8826038 | Msa0235970:CDS | 45.0% | |
| ! | TCGTCATGTGCGTTCTGTTT+TGG | + | chr2_2:8826066-8826085 | Msa0235970:CDS | 45.0% |
| ! | CGTCATGTGCGTTCTGTTTT+GGG | + | chr2_2:8826067-8826086 | Msa0235970:CDS | 45.0% |
| TGCAGACTAAGCAACTTGGA+AGG | + | chr2_2:8826173-8826192 | Msa0235970:CDS | 45.0% | |
| ATGATGCAGCTTGGTTGTGA+TGG | + | chr2_2:8826253-8826272 | Msa0235970:CDS | 45.0% | |
| ! | GGTTCTGGTGTGTTTAAGAG+TGG | + | chr2_2:8826286-8826305 | Msa0235970:CDS | 45.0% |
| TGTGTTTAAGAGTGGGGATC+CGG | + | chr2_2:8826294-8826313 | Msa0235970:CDS | 45.0% | |
| !!! | TGATCCTGAGATTTTGGCTG+AGG | + | chr2_2:8826360-8826379 | Msa0235970:CDS | 45.0% |
| CTAACCTCAGCCAAAATCTC+AGG | - | chr2_2:8826367-8826386 | None:intergenic | 45.0% | |
| ! | GCTGAGGTTAGTTGTGGATT+GGG | + | chr2_2:8826376-8826395 | Msa0235970:CDS | 45.0% |
| ! | TCTGGAGTCGTAACCGTCTA+CGG | + | chr2_2:8825530-8825549 | Msa0235970:CDS | 50.0% |
| TCCCCATTCTCCGTCAAAGT+CGG | + | chr2_2:8825596-8825615 | Msa0235970:CDS | 50.0% | |
| ! | TACGAGCTTTGGCCATGACA+GGG | - | chr2_2:8825814-8825833 | None:intergenic | 50.0% |
| ! | ATACGAGCTTTGGCCATGAC+AGG | - | chr2_2:8825815-8825834 | None:intergenic | 50.0% |
| GTCATGGCCAAAGCTCGTAT+CGG | + | chr2_2:8825815-8825834 | Msa0235970:CDS | 50.0% | |
| GCTCAGATCCTCGAATCTCT+CGG | + | chr2_2:8825851-8825870 | Msa0235970:CDS | 50.0% | |
| GTTTGTGGCTGTCGTAACCT+TGG | + | chr2_2:8825959-8825978 | Msa0235970:CDS | 50.0% | |
| GCTGCCATGATTCGTACCAA+AGG | + | chr2_2:8826010-8826029 | Msa0235970:CDS | 50.0% | |
| ACCAAAGGTGAAGCTGGTAC+TGG | + | chr2_2:8826025-8826044 | Msa0235970:CDS | 50.0% | |
| TCCAGTACCAGCTTCACCTT+TGG | - | chr2_2:8826029-8826048 | None:intergenic | 50.0% | |
| ! | GGCTGAGGTTAGTTGTGGAT+TGG | + | chr2_2:8826375-8826394 | Msa0235970:CDS | 50.0% |
| !! | TTGTGGATTGGGCGAAGCTA+TGG | + | chr2_2:8826387-8826406 | Msa0235970:CDS | 50.0% |
| GATTGGGCGAAGCTATGGTT+GGG | + | chr2_2:8826392-8826411 | Msa0235970:CDS | 50.0% | |
| ! | TCTGGAGTCGTAACCGTCTA+CGG | + | chr2_2:8825530-8825549 | Msa0235970:CDS | 50.0% |
| TCCCCATTCTCCGTCAAAGT+CGG | + | chr2_2:8825596-8825615 | Msa0235970:CDS | 50.0% | |
| ! | TACGAGCTTTGGCCATGACA+GGG | - | chr2_2:8825814-8825833 | None:intergenic | 50.0% |
| ! | ATACGAGCTTTGGCCATGAC+AGG | - | chr2_2:8825815-8825834 | None:intergenic | 50.0% |
| GTCATGGCCAAAGCTCGTAT+CGG | + | chr2_2:8825815-8825834 | Msa0235970:CDS | 50.0% | |
| GCTCAGATCCTCGAATCTCT+CGG | + | chr2_2:8825851-8825870 | Msa0235970:CDS | 50.0% | |
| GTTTGTGGCTGTCGTAACCT+TGG | + | chr2_2:8825959-8825978 | Msa0235970:CDS | 50.0% | |
| GCTGCCATGATTCGTACCAA+AGG | + | chr2_2:8826010-8826029 | Msa0235970:CDS | 50.0% | |
| ACCAAAGGTGAAGCTGGTAC+TGG | + | chr2_2:8826025-8826044 | Msa0235970:CDS | 50.0% | |
| TCCAGTACCAGCTTCACCTT+TGG | - | chr2_2:8826029-8826048 | None:intergenic | 50.0% | |
| ! | GGCTGAGGTTAGTTGTGGAT+TGG | + | chr2_2:8826375-8826394 | Msa0235970:CDS | 50.0% |
| !! | TTGTGGATTGGGCGAAGCTA+TGG | + | chr2_2:8826387-8826406 | Msa0235970:CDS | 50.0% |
| GATTGGGCGAAGCTATGGTT+GGG | + | chr2_2:8826392-8826411 | Msa0235970:CDS | 50.0% | |
| GTCGTAACCGTCTACGGCAA+CGG | + | chr2_2:8825536-8825555 | Msa0235970:CDS | 55.0% | |
| !! | GGTGGTGGTGGAGGTTGTTT+CGG | - | chr2_2:8825570-8825589 | None:intergenic | 55.0% |
| !! | GAATGGGGAGGATTTGGTGG+TGG | - | chr2_2:8825585-8825604 | None:intergenic | 55.0% |
| GGAGAATGGGGAGGATTTGG+TGG | - | chr2_2:8825588-8825607 | None:intergenic | 55.0% | |
| GACGGAGAATGGGGAGGATT+TGG | - | chr2_2:8825591-8825610 | None:intergenic | 55.0% | |
| GACTTTGACGGAGAATGGGG+AGG | - | chr2_2:8825597-8825616 | None:intergenic | 55.0% | |
| ! | GCCGACTTTGACGGAGAATG+GGG | - | chr2_2:8825600-8825619 | None:intergenic | 55.0% |
| ! | GGCCGACTTTGACGGAGAAT+GGG | - | chr2_2:8825601-8825620 | None:intergenic | 55.0% |
| ! | AGGCCGACTTTGACGGAGAA+TGG | - | chr2_2:8825602-8825621 | None:intergenic | 55.0% |
| ! | TTGAGCGAGGCCGACTTTGA+CGG | - | chr2_2:8825609-8825628 | None:intergenic | 55.0% |
| GCTCGTATCGCTGAAGAAGC+CGG | + | chr2_2:8825674-8825693 | Msa0235970:CDS | 55.0% | |
| ! | AGCTTTGGCCATGACAGGGA+TGG | - | chr2_2:8825810-8825829 | None:intergenic | 55.0% |
| TTCGGCGAAGAGCTTCACCA+AGG | - | chr2_2:8825979-8825998 | None:intergenic | 55.0% | |
| TGGCAGCACCTTCGCGAATT+CGG | - | chr2_2:8825997-8826016 | None:intergenic | 55.0% | |
| CCAGCAGCAAACTGCACAAC+AGG | - | chr2_2:8826202-8826221 | None:intergenic | 55.0% | |
| !! | CCTGTTGTGCAGTTTGCTGC+TGG | + | chr2_2:8826199-8826218 | Msa0235970:CDS | 55.0% |
| !! | GTTGTGCAGTTTGCTGCTGG+TGG | + | chr2_2:8826202-8826221 | Msa0235970:CDS | 55.0% |
| GGATTGGGCGAAGCTATGGT+TGG | + | chr2_2:8826391-8826410 | Msa0235970:CDS | 55.0% | |
| GTCGTAACCGTCTACGGCAA+CGG | + | chr2_2:8825536-8825555 | Msa0235970:CDS | 55.0% | |
| !! | GGTGGTGGTGGAGGTTGTTT+CGG | - | chr2_2:8825570-8825589 | None:intergenic | 55.0% |
| !! | GAATGGGGAGGATTTGGTGG+TGG | - | chr2_2:8825585-8825604 | None:intergenic | 55.0% |
| GGAGAATGGGGAGGATTTGG+TGG | - | chr2_2:8825588-8825607 | None:intergenic | 55.0% | |
| GACGGAGAATGGGGAGGATT+TGG | - | chr2_2:8825591-8825610 | None:intergenic | 55.0% | |
| GACTTTGACGGAGAATGGGG+AGG | - | chr2_2:8825597-8825616 | None:intergenic | 55.0% | |
| ! | GCCGACTTTGACGGAGAATG+GGG | - | chr2_2:8825600-8825619 | None:intergenic | 55.0% |
| ! | GGCCGACTTTGACGGAGAAT+GGG | - | chr2_2:8825601-8825620 | None:intergenic | 55.0% |
| ! | AGGCCGACTTTGACGGAGAA+TGG | - | chr2_2:8825602-8825621 | None:intergenic | 55.0% |
| ! | TTGAGCGAGGCCGACTTTGA+CGG | - | chr2_2:8825609-8825628 | None:intergenic | 55.0% |
| GCTCGTATCGCTGAAGAAGC+CGG | + | chr2_2:8825674-8825693 | Msa0235970:CDS | 55.0% | |
| ! | AGCTTTGGCCATGACAGGGA+TGG | - | chr2_2:8825810-8825829 | None:intergenic | 55.0% |
| TTCGGCGAAGAGCTTCACCA+AGG | - | chr2_2:8825979-8825998 | None:intergenic | 55.0% | |
| TGGCAGCACCTTCGCGAATT+CGG | - | chr2_2:8825997-8826016 | None:intergenic | 55.0% | |
| CCAGCAGCAAACTGCACAAC+AGG | - | chr2_2:8826202-8826221 | None:intergenic | 55.0% | |
| !! | CCTGTTGTGCAGTTTGCTGC+TGG | + | chr2_2:8826199-8826218 | Msa0235970:CDS | 55.0% |
| !! | GTTGTGCAGTTTGCTGCTGG+TGG | + | chr2_2:8826202-8826221 | Msa0235970:CDS | 55.0% |
| GGATTGGGCGAAGCTATGGT+TGG | + | chr2_2:8826391-8826410 | Msa0235970:CDS | 55.0% | |
| GAGTGCACCGTTGCCGTAGA+CGG | - | chr2_2:8825546-8825565 | None:intergenic | 60.0% | |
| !! | GGAGGATTTGGTGGTGGTGG+AGG | - | chr2_2:8825579-8825598 | None:intergenic | 60.0% |
| !! | TGGGGAGGATTTGGTGGTGG+TGG | - | chr2_2:8825582-8825601 | None:intergenic | 60.0% |
| GACACGCTCCAAGGCCATGA+CGG | - | chr2_2:8825708-8825727 | None:intergenic | 60.0% | |
| !! | CATGACAGGGATGGTGACGG+CGG | - | chr2_2:8825801-8825820 | None:intergenic | 60.0% |
| GGCCATGACAGGGATGGTGA+CGG | - | chr2_2:8825804-8825823 | None:intergenic | 60.0% | |
| GCTCTTCGCCGAATTCGCGA+AGG | + | chr2_2:8825986-8826005 | Msa0235970:CDS | 60.0% | |
| !! | GCAGTTTGCTGCTGGTGGTG+TGG | + | chr2_2:8826207-8826226 | Msa0235970:CDS | 60.0% |
| ATCATCAACGCCGCATCCGC+CGG | - | chr2_2:8826238-8826257 | None:intergenic | 60.0% | |
| !! | GCGGCGTTGATGATGCAGCT+TGG | + | chr2_2:8826244-8826263 | Msa0235970:CDS | 60.0% |
| GGATCCGGCGAAAAGAGCGA+GGG | + | chr2_2:8826309-8826328 | Msa0235970:CDS | 60.0% | |
| ! | ATCGCCCTCGCTCTTTTCGC+CGG | - | chr2_2:8826316-8826335 | None:intergenic | 60.0% |
| GAGTGCACCGTTGCCGTAGA+CGG | - | chr2_2:8825546-8825565 | None:intergenic | 60.0% | |
| !! | GGAGGATTTGGTGGTGGTGG+AGG | - | chr2_2:8825579-8825598 | None:intergenic | 60.0% |
| !! | TGGGGAGGATTTGGTGGTGG+TGG | - | chr2_2:8825582-8825601 | None:intergenic | 60.0% |
| GACACGCTCCAAGGCCATGA+CGG | - | chr2_2:8825708-8825727 | None:intergenic | 60.0% | |
| !! | CATGACAGGGATGGTGACGG+CGG | - | chr2_2:8825801-8825820 | None:intergenic | 60.0% |
| GGCCATGACAGGGATGGTGA+CGG | - | chr2_2:8825804-8825823 | None:intergenic | 60.0% | |
| GCTCTTCGCCGAATTCGCGA+AGG | + | chr2_2:8825986-8826005 | Msa0235970:CDS | 60.0% | |
| !! | GCAGTTTGCTGCTGGTGGTG+TGG | + | chr2_2:8826207-8826226 | Msa0235970:CDS | 60.0% |
| ATCATCAACGCCGCATCCGC+CGG | - | chr2_2:8826238-8826257 | None:intergenic | 60.0% | |
| !! | GCGGCGTTGATGATGCAGCT+TGG | + | chr2_2:8826244-8826263 | Msa0235970:CDS | 60.0% |
| GGATCCGGCGAAAAGAGCGA+GGG | + | chr2_2:8826309-8826328 | Msa0235970:CDS | 60.0% | |
| ! | ATCGCCCTCGCTCTTTTCGC+CGG | - | chr2_2:8826316-8826335 | None:intergenic | 60.0% |
| GGCCTCGCTCAAATGCTCCG+CGG | + | chr2_2:8825617-8825636 | Msa0235970:CDS | 65.0% | |
| CTCGCTCAAATGCTCCGCGG+CGG | + | chr2_2:8825620-8825639 | Msa0235970:CDS | 65.0% | |
| CGTCCATGATGACACCGCCG+CGG | - | chr2_2:8825637-8825656 | None:intergenic | 65.0% | |
| CGCCGTCACCATCCCTGTCA+TGG | + | chr2_2:8825799-8825818 | Msa0235970:CDS | 65.0% | |
| ! | TGCTGGTGGTGTGGCGACAC+CGG | + | chr2_2:8826216-8826235 | Msa0235970:CDS | 65.0% |
| GGGATCCGGCGAAAAGAGCG+AGG | + | chr2_2:8826308-8826327 | Msa0235970:CDS | 65.0% | |
| GGCCTCGCTCAAATGCTCCG+CGG | + | chr2_2:8825617-8825636 | Msa0235970:CDS | 65.0% | |
| CTCGCTCAAATGCTCCGCGG+CGG | + | chr2_2:8825620-8825639 | Msa0235970:CDS | 65.0% | |
| CGTCCATGATGACACCGCCG+CGG | - | chr2_2:8825637-8825656 | None:intergenic | 65.0% | |
| CGCCGTCACCATCCCTGTCA+TGG | + | chr2_2:8825799-8825818 | Msa0235970:CDS | 65.0% | |
| ! | TGCTGGTGGTGTGGCGACAC+CGG | + | chr2_2:8826216-8826235 | Msa0235970:CDS | 65.0% |
| GGGATCCGGCGAAAAGAGCG+AGG | + | chr2_2:8826308-8826327 | Msa0235970:CDS | 65.0% | |
| ! | CGCCGCGGAGCATTTGAGCG+AGG | - | chr2_2:8825622-8825641 | None:intergenic | 70.0% |
| !! | GCTCCGCGGCGGTGTCATCA+TGG | + | chr2_2:8825631-8825650 | Msa0235970:CDS | 70.0% |
| CGCTTGCGCCGTCATGGCCT+TGG | + | chr2_2:8825697-8825716 | Msa0235970:CDS | 70.0% | |
| CTTGAGCGCGGATGTCGGCG+GGG | - | chr2_2:8825730-8825749 | None:intergenic | 70.0% | |
| CCTTGAGCGCGGATGTCGGC+GGG | - | chr2_2:8825731-8825750 | None:intergenic | 70.0% | |
| GCCTTGAGCGCGGATGTCGG+CGG | - | chr2_2:8825732-8825751 | None:intergenic | 70.0% | |
| GCCGACATCCGCGCTCAAGG+CGG | + | chr2_2:8825731-8825750 | Msa0235970:CDS | 70.0% | |
| GCCGCCTTGAGCGCGGATGT+CGG | - | chr2_2:8825735-8825754 | None:intergenic | 70.0% | |
| GAGCAACGCCGCCTTGAGCG+CGG | - | chr2_2:8825742-8825761 | None:intergenic | 70.0% | |
| ! | TGGTGGTGTGGCGACACCGG+CGG | + | chr2_2:8826219-8826238 | Msa0235970:CDS | 70.0% |
| TGTGGCGACACCGGCGGATG+CGG | + | chr2_2:8826225-8826244 | Msa0235970:CDS | 70.0% | |
| ! | CGCCGCGGAGCATTTGAGCG+AGG | - | chr2_2:8825622-8825641 | None:intergenic | 70.0% |
| !! | GCTCCGCGGCGGTGTCATCA+TGG | + | chr2_2:8825631-8825650 | Msa0235970:CDS | 70.0% |
| CGCTTGCGCCGTCATGGCCT+TGG | + | chr2_2:8825697-8825716 | Msa0235970:CDS | 70.0% | |
| CTTGAGCGCGGATGTCGGCG+GGG | - | chr2_2:8825730-8825749 | None:intergenic | 70.0% | |
| CCTTGAGCGCGGATGTCGGC+GGG | - | chr2_2:8825731-8825750 | None:intergenic | 70.0% | |
| GCCTTGAGCGCGGATGTCGG+CGG | - | chr2_2:8825732-8825751 | None:intergenic | 70.0% | |
| GCCGACATCCGCGCTCAAGG+CGG | + | chr2_2:8825731-8825750 | Msa0235970:CDS | 70.0% | |
| GCCGCCTTGAGCGCGGATGT+CGG | - | chr2_2:8825735-8825754 | None:intergenic | 70.0% | |
| GAGCAACGCCGCCTTGAGCG+CGG | - | chr2_2:8825742-8825761 | None:intergenic | 70.0% | |
| ! | TGGTGGTGTGGCGACACCGG+CGG | + | chr2_2:8826219-8826238 | Msa0235970:CDS | 70.0% |
| TGTGGCGACACCGGCGGATG+CGG | + | chr2_2:8826225-8826244 | Msa0235970:CDS | 70.0% | |
| AGCCGGCGCTTGCGCCGTCA+TGG | + | chr2_2:8825691-8825710 | Msa0235970:CDS | 75.0% | |
| GGCCATGACGGCGCAAGCGC+CGG | - | chr2_2:8825696-8825715 | None:intergenic | 75.0% | |
| GTCGGCGGGGACACGCTCCA+AGG | - | chr2_2:8825717-8825736 | None:intergenic | 75.0% | |
| CCCGCCGACATCCGCGCTCA+AGG | + | chr2_2:8825728-8825747 | Msa0235970:CDS | 75.0% | |
| AGCCGGCGCTTGCGCCGTCA+TGG | + | chr2_2:8825691-8825710 | Msa0235970:CDS | 75.0% | |
| GGCCATGACGGCGCAAGCGC+CGG | - | chr2_2:8825696-8825715 | None:intergenic | 75.0% | |
| GTCGGCGGGGACACGCTCCA+AGG | - | chr2_2:8825717-8825736 | None:intergenic | 75.0% | |
| CCCGCCGACATCCGCGCTCA+AGG | + | chr2_2:8825728-8825747 | Msa0235970:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 8825521 | 8826465 | 8825521 | ID=Msa0235970;Name=Msa0235970 |
| chr2_2 | mRNA | 8825521 | 8826465 | 8825521 | ID=Msa0235970-mRNA-1;Parent=Msa0235970;Name=Msa0235970-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|314 |
| chr2_2 | exon | 8825521 | 8826465 | 8825521 | ID=Msa0235970-mRNA-1:exon:3807;Parent=Msa0235970-mRNA-1 |
| chr2_2 | CDS | 8825521 | 8826465 | 8825521 | ID=Msa0235970-mRNA-1:cds;Parent=Msa0235970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
