Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1255090 | XP_024628404.1 | 97.778 | 180 | 4 | 0 | 1 | 180 | 1 | 180 | 3.97e-122 | 352 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1255090 | G7LDZ5 | 97.778 | 180 | 4 | 0 | 1 | 180 | 1 | 180 | 1.90e-122 | 352 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1229520 | Msa1255090 | 0.825967 | 3.511416e-54 | -8.615850e-47 |
| Msa1255090 | Msa1295540 | 0.879236 | 1.469556e-69 | -8.615850e-47 |
| Msa1202770 | Msa1255090 | 0.885140 | 1.050810e-71 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1255090 | MtrunA17_Chr8g0373081 | 97.778 | 180 | 4 | 0 | 1 | 180 | 1 | 180 | 3.65e-126 | 352 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1255090 | AT3G51010.1 | 54.450 | 191 | 70 | 4 | 3 | 180 | 1 | 187 | 1.13e-61 | 189 |
Find 84 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCCCTTGATTAGGCTTAT+TGG | 0.196474 | 8_2:+53487511 | None:intergenic |
| TCTATGGCTTAAATTTATTT+AGG | 0.203158 | 8_2:-53485977 | Msa1255090:exon |
| GGTGGGTGGCGGTGGGCCGC+TGG | 0.220759 | 8_2:+53488905 | None:intergenic |
| CTCCCTTGATTAGGCTTATT+GGG | 0.266061 | 8_2:+53487512 | None:intergenic |
| AGACGGTTCAAATTATTAAT+TGG | 0.281969 | 8_2:+53485915 | None:intergenic |
| TTGCGTGCTTTCGTGTTAAT+TGG | 0.284372 | 8_2:+53488848 | None:intergenic |
| TGGTTGGTGGTGGGTGGCGG+TGG | 0.302438 | 8_2:+53488897 | None:intergenic |
| CTCTTGATGCTCCCTTGATT+AGG | 0.327155 | 8_2:+53487503 | None:intergenic |
| GTCGTCCAGGGCCTTATGCT+TGG | 0.331141 | 8_2:-53487565 | Msa1255090:intron |
| ATTAGGCTTATTGGGAAGTA+TGG | 0.347303 | 8_2:+53487520 | None:intergenic |
| TCTTCTTTGCAACCATCTTC+CGG | 0.379881 | 8_2:-53487785 | Msa1255090:CDS |
| GTGGGTGGCGGTGGGCCGCT+GGG | 0.381686 | 8_2:+53488906 | None:intergenic |
| CATGTGATGTTAATATAAAC+AGG | 0.384333 | 8_2:+53485745 | None:intergenic |
| GGTTGGTTGGTGGTGGGTGG+CGG | 0.389072 | 8_2:+53488894 | None:intergenic |
| TCGTCCAGGGCCTTATGCTT+GGG | 0.393020 | 8_2:-53487564 | Msa1255090:intron |
| GAGCGACGGTTGGTTGGTGG+TGG | 0.396754 | 8_2:+53488887 | None:intergenic |
| CAAGCTAGCCCGCTTTCGAC+GGG | 0.400130 | 8_2:+53487670 | None:intergenic |
| TAAGAAGGTAGAGCGTAAAA+TGG | 0.403135 | 8_2:-53486074 | Msa1255090:CDS |
| ATGCAAGCTCACCGTGCATA+TGG | 0.410402 | 8_2:+53485707 | None:intergenic |
| GGTGGTTTGCTGCCGGAAGA+TGG | 0.417214 | 8_2:+53487773 | None:intergenic |
| GCTAATATATACCAGTATAA+AGG | 0.421466 | 8_2:+53487445 | None:intergenic |
| GCTGTGAAAGTGGCTCAAAA+AGG | 0.426398 | 8_2:+53487736 | None:intergenic |
| TCAAGCTAGCCCGCTTTCGA+CGG | 0.435563 | 8_2:+53487669 | None:intergenic |
| TTATCAGAAGGTCGTCTCTT+GGG | 0.451983 | 8_2:+53487695 | None:intergenic |
| AAGAGAGTGGGCAGAAAGAC+TGG | 0.452985 | 8_2:-53486035 | Msa1255090:CDS |
| GCTTGGGTTGAACACACAAC+TGG | 0.459757 | 8_2:-53487548 | Msa1255090:CDS |
| CTTCCCAATAAGCCTAATCA+AGG | 0.465217 | 8_2:-53487515 | Msa1255090:CDS |
| AAAACTGACCTGAAAACTGA+TGG | 0.466997 | 8_2:+53488824 | None:intergenic |
| TGATAAACCCCGTCGAAAGC+GGG | 0.471130 | 8_2:-53487678 | Msa1255090:CDS |
| GGTTGGTGGTGGGTGGCGGT+GGG | 0.471297 | 8_2:+53488898 | None:intergenic |
| TTGTTCTACCTTACTCTGGA+CGG | 0.482298 | 8_2:-53485776 | Msa1255090:three_prime_UTR |
| GTGTGTTCAACCCAAGCATA+AGG | 0.483354 | 8_2:+53487554 | None:intergenic |
| GCAGCGCCGTGCCTTTATAC+TGG | 0.484793 | 8_2:-53487456 | Msa1255090:intron |
| TTTAACACCCGTCCAGAGTA+AGG | 0.485094 | 8_2:+53485768 | None:intergenic |
| TTTATCAGAAGGTCGTCTCT+TGG | 0.486620 | 8_2:+53487694 | None:intergenic |
| TGTTCTACCTTACTCTGGAC+GGG | 0.498250 | 8_2:-53485775 | Msa1255090:three_prime_UTR |
| GGAGAGCGACGGTTGGTTGG+TGG | 0.499459 | 8_2:+53488884 | None:intergenic |
| GGCATTAACAATTGCAAATG+AGG | 0.499920 | 8_2:+53485953 | None:intergenic |
| AGCGACGGTTGGTTGGTGGT+GGG | 0.500113 | 8_2:+53488888 | None:intergenic |
| TCATTTGCAATTGTTAATGC+CGG | 0.509743 | 8_2:-53485951 | Msa1255090:three_prime_UTR |
| TTTCGACGGGGTTTATCAGA+AGG | 0.512993 | 8_2:+53487683 | None:intergenic |
| AGATTCGGAAGAGGAGTCCT+CGG | 0.513910 | 8_2:-53487890 | Msa1255090:CDS |
| GCGGAAGAAGAACGTTAAGA+AGG | 0.519807 | 8_2:-53486089 | Msa1255090:CDS |
| GAATTGGGGTGGTTTGCTGC+CGG | 0.523920 | 8_2:+53487766 | None:intergenic |
| GTTTATATTAACATCACATG+TGG | 0.524336 | 8_2:-53485742 | Msa1255090:three_prime_UTR |
| TGATCTCACTCTCGTCGTCA+AGG | 0.527754 | 8_2:-53487850 | Msa1255090:CDS |
| CTCACTCTCGTCGTCAAGGA+CGG | 0.532447 | 8_2:-53487846 | Msa1255090:CDS |
| TGTAGGCGGAAAAGAAGAAA+AGG | 0.538675 | 8_2:-53486135 | Msa1255090:intron |
| AGAGGAGAGCGACGGTTGGT+TGG | 0.548202 | 8_2:+53488881 | None:intergenic |
| GACGGTTGGTTGGTGGTGGG+TGG | 0.557346 | 8_2:+53488891 | None:intergenic |
| TGTTGCTGTGAGAAAGAAGA+AGG | 0.560710 | 8_2:+53488933 | None:intergenic |
| TGTCTGTCAAGCTGTGAAAG+TGG | 0.568033 | 8_2:+53487726 | None:intergenic |
| TCGTGTTAATTGGCTGAGAG+AGG | 0.568221 | 8_2:+53488858 | None:intergenic |
| GTAAAATGGCTGCAGTTGCA+AGG | 0.569157 | 8_2:-53486060 | Msa1255090:CDS |
| GAGGAGAGGAGAGCGACGGT+TGG | 0.573324 | 8_2:+53488877 | None:intergenic |
| CTGATAAACCCCGTCGAAAG+CGG | 0.575794 | 8_2:-53487679 | Msa1255090:CDS |
| TAAAATGGCTGCAGTTGCAA+GGG | 0.587269 | 8_2:-53486059 | Msa1255090:CDS |
| TTTATATTAACATCACATGT+GGG | 0.590037 | 8_2:-53485741 | Msa1255090:three_prime_UTR |
| GGTTGCAAAGAAGAATGAAA+CGG | 0.590402 | 8_2:+53487794 | None:intergenic |
| GATTCGGAAGAGGAGTCCTC+GGG | 0.593998 | 8_2:-53487889 | Msa1255090:CDS |
| GGTTGAATTGCAGCGCCTTG+AGG | 0.594805 | 8_2:-53486014 | Msa1255090:CDS |
| AGTTGCAAGGGAAAGAGAGT+GGG | 0.599831 | 8_2:-53486047 | Msa1255090:CDS |
| AAACTGACCTGAAAACTGAT+GGG | 0.600952 | 8_2:+53488825 | None:intergenic |
| GAAGATATAGTATGTGTAGA+CGG | 0.603025 | 8_2:+53485898 | None:intergenic |
| CTCAGATGCAAGAGGCTAAG+CGG | 0.604543 | 8_2:-53486108 | Msa1255090:CDS |
| CAGTTGCAAGGGAAAGAGAG+TGG | 0.605780 | 8_2:-53486048 | Msa1255090:CDS |
| ACGACGAGAGTGAGATCAGA+GGG | 0.612151 | 8_2:+53487855 | None:intergenic |
| TTTAGATCTGTCCATATGCA+CGG | 0.618218 | 8_2:-53485718 | Msa1255090:three_prime_UTR |
| TCTTCTTTCTCACAGCAACA+CGG | 0.624449 | 8_2:-53488930 | Msa1255090:five_prime_UTR |
| GAGAGAGGAGAGGAGAGCGA+CGG | 0.630646 | 8_2:+53488873 | None:intergenic |
| TTCCCAATAAGCCTAATCAA+GGG | 0.632102 | 8_2:-53487514 | Msa1255090:CDS |
| CTAATCAAGGGAGCATCAAG+AGG | 0.644871 | 8_2:-53487502 | Msa1255090:CDS |
| TATATACCAGTATAAAGGCA+CGG | 0.647751 | 8_2:+53487450 | None:intergenic |
| AAGGAAAGCTCAGATGCAAG+AGG | 0.649661 | 8_2:-53486116 | Msa1255090:CDS |
| AAGCTAGCCCGCTTTCGACG+GGG | 0.650879 | 8_2:+53487671 | None:intergenic |
| AGAATGAAACGGCAATGTGG+AGG | 0.653637 | 8_2:+53487805 | None:intergenic |
| AAGGGAAGAAGGAATTGGGG+TGG | 0.654054 | 8_2:+53487755 | None:intergenic |
| ATCAAGGGAGCATCAAGAGG+AGG | 0.654645 | 8_2:-53487499 | Msa1255090:CDS |
| GGAATGAGAAGAAACGCATG+AGG | 0.662356 | 8_2:-53487478 | Msa1255090:CDS |
| TTAATTGGCTGAGAGAGGAG+AGG | 0.669803 | 8_2:+53488863 | None:intergenic |
| AGAAGAATGAAACGGCAATG+TGG | 0.685252 | 8_2:+53487802 | None:intergenic |
| GACGACGAGAGTGAGATCAG+AGG | 0.687668 | 8_2:+53487854 | None:intergenic |
| TCACAGCAACACGGACCCAG+CGG | 0.694597 | 8_2:-53488921 | Msa1255090:five_prime_UTR |
| GAGGGCGTAAAACATTCCCG+AGG | 0.745952 | 8_2:+53487873 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATAAAATGAAATTAAG+TGG | + | chr8_2:53487255-53487274 | None:intergenic | 10.0% |
| !!! | TTAATTTCATTTTATATATC+AGG | - | chr8_2:53487256-53487275 | Msa1255090:intron | 10.0% |
| !!! | TCATTTTTTTTAAAAAGAAT+AGG | + | chr8_2:53488373-53488392 | None:intergenic | 10.0% |
| !! | TATCAATATAAAATCAACAA+AGG | + | chr8_2:53486046-53486065 | None:intergenic | 15.0% |
| !! | AATGTAATTAATTGTTTGTT+AGG | - | chr8_2:53486438-53486457 | Msa1255090:intron | 15.0% |
| !! | TAAATTATACATAGAAGTTT+AGG | - | chr8_2:53487583-53487602 | Msa1255090:intron | 15.0% |
| !! | TATTTAACATAAACTAATCT+TGG | - | chr8_2:53487725-53487744 | Msa1255090:CDS | 15.0% |
| !!! | AATTTTTCTATAAGGAATTT+TGG | + | chr8_2:53488417-53488436 | None:intergenic | 15.0% |
| !!! | AAAGTTCAAATTTTTCTATA+AGG | + | chr8_2:53488425-53488444 | None:intergenic | 15.0% |
| !! | TTATAGAAAAATTTGAACTT+TGG | - | chr8_2:53488424-53488443 | Msa1255090:intron | 15.0% |
| !! | AATGAACATACAATTATATT+AGG | + | chr8_2:53488505-53488524 | None:intergenic | 15.0% |
| !! | TAATATAATTGTATGTTCAT+TGG | - | chr8_2:53488504-53488523 | Msa1255090:intron | 15.0% |
| !! | AATATAATTGTATGTTCATT+GGG | - | chr8_2:53488505-53488524 | Msa1255090:intron | 15.0% |
| !! | TTATGAAGAATAATTGAATC+AGG | - | chr8_2:53486009-53486028 | Msa1255090:CDS | 20.0% |
| !! | CTCTCACAAAAAAAAAAAAA+AGG | + | chr8_2:53486251-53486270 | None:intergenic | 20.0% |
| !!! | TGAGTTGATTATAAAAAACA+AGG | + | chr8_2:53486677-53486696 | None:intergenic | 20.0% |
| !! | TCAGAGAAAAATTTGTATAT+TGG | - | chr8_2:53486733-53486752 | Msa1255090:intron | 20.0% |
| !! | TATGAGTTTCATTTAAATCT+TGG | + | chr8_2:53487994-53488013 | None:intergenic | 20.0% |
| !! | TATACCTTAAACATACATAT+AGG | + | chr8_2:53488126-53488145 | None:intergenic | 20.0% |
| !! | TCTATGGCTTAAATTTATTT+AGG | - | chr8_2:53488698-53488717 | Msa1255090:intron | 20.0% |
| !! | TTTATATTAACATCACATGT+GGG | - | chr8_2:53488934-53488953 | Msa1255090:five_prime_UTR | 20.0% |
| !!! | TGAAATTGATTTTAGCCTTT+AGG | - | chr8_2:53485965-53485984 | Msa1255090:three_prime_UTR | 25.0% |
| !! | AAAATAAGGCATTTATGAGT+TGG | - | chr8_2:53486344-53486363 | Msa1255090:intron | 25.0% |
| ! | GCTGAAAAACTAAATGTAAT+TGG | - | chr8_2:53486589-53486608 | Msa1255090:intron | 25.0% |
| ! | AGCTGAAAAAACTATTGAAT+CGG | - | chr8_2:53486626-53486645 | Msa1255090:intron | 25.0% |
| !!! | TCATACATTTTTAGTTCGTT+AGG | - | chr8_2:53486694-53486713 | Msa1255090:intron | 25.0% |
| ! | GCTAATATATACCAGTATAA+AGG | + | chr8_2:53487233-53487252 | None:intergenic | 25.0% |
| ! | CTTTGTGAATATTGTTTACT+AGG | - | chr8_2:53487359-53487378 | Msa1255090:intron | 25.0% |
| ! | TTCATGGAGTATAAACTATA+AGG | - | chr8_2:53487395-53487414 | Msa1255090:intron | 25.0% |
| ! | TCACAAAAGTTGTCAAAAAA+TGG | - | chr8_2:53487676-53487695 | Msa1255090:CDS | 25.0% |
| ! | ATACTTATGAACGATAGATA+AGG | - | chr8_2:53487843-53487862 | Msa1255090:CDS | 25.0% |
| ! | GGTTATTATAGCTATAAGTA+TGG | + | chr8_2:53488064-53488083 | None:intergenic | 25.0% |
| !! | ACGTTCAAATTTCTATTTTG+TGG | + | chr8_2:53488085-53488104 | None:intergenic | 25.0% |
| ! | TTGACCTATATGTATGTTTA+AGG | - | chr8_2:53488119-53488138 | Msa1255090:intron | 25.0% |
| ! | AATACTATCATATCAGTATG+TGG | - | chr8_2:53488145-53488164 | Msa1255090:intron | 25.0% |
| !! | TGTTATTCTAGCTATGTATT+AGG | - | chr8_2:53488304-53488323 | Msa1255090:intron | 25.0% |
| !! | GTTATTCTAGCTATGTATTA+GGG | - | chr8_2:53488305-53488324 | Msa1255090:intron | 25.0% |
| !! | AATAGGACATGTATTTTGTT+AGG | + | chr8_2:53488356-53488375 | None:intergenic | 25.0% |
| ! | AAAAAATGAAAGTTTCTCTG+TGG | - | chr8_2:53488384-53488403 | Msa1255090:intron | 25.0% |
| ! | AGACGGTTCAAATTATTAAT+TGG | + | chr8_2:53488763-53488782 | None:intergenic | 25.0% |
| !! | TTTTATGTTGTCTGATGATT+GGG | - | chr8_2:53488806-53488825 | Msa1255090:intron | 25.0% |
| ! | CATGTGATGTTAATATAAAC+AGG | + | chr8_2:53488933-53488952 | None:intergenic | 25.0% |
| ! | GTTTATATTAACATCACATG+TGG | - | chr8_2:53488933-53488952 | Msa1255090:five_prime_UTR | 25.0% |
| GTAGTGAAAGTAATTGAATC+AGG | - | chr8_2:53485901-53485920 | Msa1255090:three_prime_UTR | 30.0% | |
| TTTCAGTAACGAAAACCTAA+AGG | + | chr8_2:53485983-53486002 | None:intergenic | 30.0% | |
| !! | ATATTGATAGTGTAGTAACC+CGG | - | chr8_2:53486057-53486076 | Msa1255090:CDS | 30.0% |
| TCCAGAATATATGATCCATT+TGG | - | chr8_2:53486272-53486291 | Msa1255090:intron | 30.0% | |
| CCAGAATATATGATCCATTT+GGG | - | chr8_2:53486273-53486292 | Msa1255090:intron | 30.0% | |
| ! | AGGAAGTTGAGTAATTTTCA+CGG | - | chr8_2:53486309-53486328 | Msa1255090:intron | 30.0% |
| ! | TTATGAGTTGGATATTCCAA+CGG | - | chr8_2:53486356-53486375 | Msa1255090:intron | 30.0% |
| TGATTTGAGCTTAAGGTTAA+CGG | + | chr8_2:53486490-53486509 | None:intergenic | 30.0% | |
| !! | TCTCAATTGATTTGAGCTTA+AGG | + | chr8_2:53486497-53486516 | None:intergenic | 30.0% |
| TATAATTGATGCAGCAGAAT+CGG | - | chr8_2:53486553-53486572 | Msa1255090:intron | 30.0% | |
| !! | TTGTATATTGGTGATGTTGT+AGG | - | chr8_2:53486745-53486764 | Msa1255090:intron | 30.0% |
| TATATACCAGTATAAAGGCA+CGG | + | chr8_2:53487228-53487247 | None:intergenic | 30.0% | |
| AGGAAACATATCATCTTTCA+TGG | - | chr8_2:53487379-53487398 | Msa1255090:intron | 30.0% | |
| ATACATAGAAGTTTAGGTAG+TGG | - | chr8_2:53487589-53487608 | Msa1255090:intron | 30.0% | |
| CAATAGAAAGAGAAAGTAGA+AGG | - | chr8_2:53487626-53487645 | Msa1255090:intron | 30.0% | |
| ATAACAGCAAAGAAAACATG+AGG | + | chr8_2:53487792-53487811 | None:intergenic | 30.0% | |
| AAGTGTCAACTAAAGCTAAA+AGG | - | chr8_2:53488206-53488225 | Msa1255090:intron | 30.0% | |
| ATGTTTATCCAAAGACCATT+TGG | + | chr8_2:53488461-53488480 | None:intergenic | 30.0% | |
| GATAAACATAACTGTGATCA+TGG | - | chr8_2:53488472-53488491 | Msa1255090:intron | 30.0% | |
| TCATTTGCAATTGTTAATGC+CGG | - | chr8_2:53488724-53488743 | Msa1255090:intron | 30.0% | |
| GAAGATATAGTATGTGTAGA+CGG | + | chr8_2:53488780-53488799 | None:intergenic | 30.0% | |
| ! | GTTTTATGTTGTCTGATGAT+TGG | - | chr8_2:53488805-53488824 | Msa1255090:intron | 30.0% |
| ! | GTAATTTTTCTCTTAGCACT+AGG | - | chr8_2:53488847-53488866 | Msa1255090:five_prime_UTR | 30.0% |
| GTAGAACAAAAACAAAAGCA+AGG | + | chr8_2:53488888-53488907 | None:intergenic | 30.0% | |
| AAACTGACCTGAAAACTGAT+GGG | + | chr8_2:53485853-53485872 | None:intergenic | 35.0% | |
| AAAACTGACCTGAAAACTGA+TGG | + | chr8_2:53485854-53485873 | None:intergenic | 35.0% | |
| !! | TATTGATAGTGTAGTAACCC+GGG | - | chr8_2:53486058-53486077 | Msa1255090:CDS | 35.0% |
| ATACCAAGTGAACATGTCTA+GGG | - | chr8_2:53486129-53486148 | Msa1255090:CDS | 35.0% | |
| !! | AAGCATCGACTTCTCAAATT+TGG | + | chr8_2:53486181-53486200 | None:intergenic | 35.0% |
| CCCAAATGGATCATATATTC+TGG | + | chr8_2:53486276-53486295 | None:intergenic | 35.0% | |
| TATATGATCCATTTGGGTGA+AGG | - | chr8_2:53486279-53486298 | Msa1255090:intron | 35.0% | |
| TATATCATCCTTCACCCAAA+TGG | + | chr8_2:53486290-53486309 | None:intergenic | 35.0% | |
| ATTTGGGTGAAGGATGATAT+AGG | - | chr8_2:53486289-53486308 | Msa1255090:intron | 35.0% | |
| ! | AGTAATTTTCACGGCTTCAA+AGG | - | chr8_2:53486318-53486337 | Msa1255090:intron | 35.0% |
| ! | GTAATTTTCACGGCTTCAAA+GGG | - | chr8_2:53486319-53486338 | Msa1255090:intron | 35.0% |
| GGCTTCAAAGGGTAAAAATA+AGG | - | chr8_2:53486330-53486349 | Msa1255090:intron | 35.0% | |
| TTCATCATGATACTAACCGT+TGG | + | chr8_2:53486375-53486394 | None:intergenic | 35.0% | |
| GATGAATTAGTTGAGAGACT+TGG | - | chr8_2:53486389-53486408 | Msa1255090:intron | 35.0% | |
| TGGTCAAGTTCTATGTAAAG+TGG | - | chr8_2:53486409-53486428 | Msa1255090:intron | 35.0% | |
| ! | AATATTTTTCTCCTTCGTCC+AGG | - | chr8_2:53486463-53486482 | Msa1255090:intron | 35.0% |
| TGAATCGGTGTAGATTACTA+TGG | - | chr8_2:53486641-53486660 | Msa1255090:intron | 35.0% | |
| GTGTAGATTACTATGGTGAA+TGG | - | chr8_2:53486648-53486667 | Msa1255090:intron | 35.0% | |
| TGCACGAGAAAAATGAGATT+CGG | - | chr8_2:53486770-53486789 | Msa1255090:intron | 35.0% | |
| AGAAAAATGAGATTCGGAAG+AGG | - | chr8_2:53486776-53486795 | Msa1255090:intron | 35.0% | |
| GGTTGCAAAGAAGAATGAAA+CGG | + | chr8_2:53486884-53486903 | None:intergenic | 35.0% | |
| AAAAAGGGAAGAAGGAATTG+GGG | + | chr8_2:53486926-53486945 | None:intergenic | 35.0% | |
| CAAAAAGGGAAGAAGGAATT+GGG | + | chr8_2:53486927-53486946 | None:intergenic | 35.0% | |
| TCAAAAAGGGAAGAAGGAAT+TGG | + | chr8_2:53486928-53486947 | None:intergenic | 35.0% | |
| ATTAGGCTTATTGGGAAGTA+TGG | + | chr8_2:53487158-53487177 | None:intergenic | 35.0% | |
| TTCCCAATAAGCCTAATCAA+GGG | - | chr8_2:53487161-53487180 | Msa1255090:intron | 35.0% | |
| GACTCACACATGTAAATCAA+AGG | + | chr8_2:53487311-53487330 | None:intergenic | 35.0% | |
| ! | AACTATAAGGTGCTTGAGTT+TGG | - | chr8_2:53487408-53487427 | Msa1255090:intron | 35.0% |
| CAACAAGTTGTCACAAGAAA+GGG | + | chr8_2:53487557-53487576 | None:intergenic | 35.0% | |
| AATCTTGGACCATCTGTATT+GGG | + | chr8_2:53487979-53487998 | None:intergenic | 35.0% | |
| AAATCTTGGACCATCTGTAT+TGG | + | chr8_2:53487980-53487999 | None:intergenic | 35.0% | |
| ! | ATTCTAGCTATGTATTAGGG+AGG | - | chr8_2:53488308-53488327 | Msa1255090:intron | 35.0% |
| TTGGTTGTATATCAGCCAAA+TGG | - | chr8_2:53488443-53488462 | Msa1255090:intron | 35.0% | |
| TATATCAGCCAAATGGTCTT+TGG | - | chr8_2:53488450-53488469 | Msa1255090:intron | 35.0% | |
| !!! | TTGGGAACTTTTTTGCATGT+AGG | - | chr8_2:53488523-53488542 | Msa1255090:intron | 35.0% |
| TAAGAAGGTAGAGCGTAAAA+TGG | - | chr8_2:53488601-53488620 | Msa1255090:intron | 35.0% | |
| !! | ACTTTTTCTTCTCTTCCTCA+AGG | + | chr8_2:53488679-53488698 | None:intergenic | 35.0% |
| GGAAGAGAAGAAAAAGTCTA+TGG | - | chr8_2:53488682-53488701 | Msa1255090:intron | 35.0% | |
| GGCATTAACAATTGCAAATG+AGG | + | chr8_2:53488725-53488744 | None:intergenic | 35.0% | |
| ! | TTAATGCCGGTCAAGTTTTT+GGG | - | chr8_2:53488737-53488756 | Msa1255090:intron | 35.0% |
| GAACAAAAACAAAAGCAAGG+CGG | + | chr8_2:53488885-53488904 | None:intergenic | 35.0% | |
| ! | GTTTTTGTTCTACCTTACTC+TGG | - | chr8_2:53488895-53488914 | Msa1255090:five_prime_UTR | 35.0% |
| TTTAGATCTGTCCATATGCA+CGG | - | chr8_2:53488957-53488976 | Msa1255090:five_prime_UTR | 35.0% | |
| TGTTGCTGTGAGAAAGAAGA+AGG | + | chr8_2:53485745-53485764 | None:intergenic | 40.0% | |
| TCTTCTTTCTCACAGCAACA+CGG | - | chr8_2:53485745-53485764 | Msa1255090:three_prime_UTR | 40.0% | |
| TTGCGTGCTTTCGTGTTAAT+TGG | + | chr8_2:53485830-53485849 | None:intergenic | 40.0% | |
| TCTTCGCATATTTCATAGCC+CGG | + | chr8_2:53486079-53486098 | None:intergenic | 40.0% | |
| CTAGACATGTTCACTTGGTA+TGG | + | chr8_2:53486130-53486149 | None:intergenic | 40.0% | |
| CATACCAAGTGAACATGTCT+AGG | - | chr8_2:53486128-53486147 | Msa1255090:CDS | 40.0% | |
| TCTATCACTCCATTAGACAG+TGG | + | chr8_2:53486208-53486227 | None:intergenic | 40.0% | |
| AGAAGAATGAAACGGCAATG+TGG | + | chr8_2:53486876-53486895 | None:intergenic | 40.0% | |
| TCTTCTTTGCAACCATCTTC+CGG | - | chr8_2:53486890-53486909 | Msa1255090:intron | 40.0% | |
| CTGTGAAAGTGGCTCAAAAA+GGG | + | chr8_2:53486941-53486960 | None:intergenic | 40.0% | |
| TTATCAGAAGGTCGTCTCTT+GGG | + | chr8_2:53486983-53487002 | None:intergenic | 40.0% | |
| TTTATCAGAAGGTCGTCTCT+TGG | + | chr8_2:53486984-53487003 | None:intergenic | 40.0% | |
| TTATGATGAACTTGTCGTCC+AGG | - | chr8_2:53487097-53487116 | Msa1255090:intron | 40.0% | |
| TATGATGAACTTGTCGTCCA+GGG | - | chr8_2:53487098-53487117 | Msa1255090:intron | 40.0% | |
| CTTCCCAATAAGCCTAATCA+AGG | - | chr8_2:53487160-53487179 | Msa1255090:intron | 40.0% | |
| CTCCCTTGATTAGGCTTATT+GGG | + | chr8_2:53487166-53487185 | None:intergenic | 40.0% | |
| !! | TTTGGAACAAAGGTGTTGTC+TGG | - | chr8_2:53487426-53487445 | Msa1255090:intron | 40.0% |
| CCAACAAGTTGTCACAAGAA+AGG | + | chr8_2:53487558-53487577 | None:intergenic | 40.0% | |
| CCTTTCTTGTGACAACTTGT+TGG | - | chr8_2:53487555-53487574 | Msa1255090:CDS | 40.0% | |
| !! | GTTATGAGAGAGCATCAAGA+TGG | + | chr8_2:53487751-53487770 | None:intergenic | 40.0% |
| !! | CACAGTGAAAGCATCTTTAG+AGG | - | chr8_2:53487879-53487898 | Msa1255090:CDS | 40.0% |
| !! | GGGTAATGGAGTTAGGTTTA+TGG | + | chr8_2:53487959-53487978 | None:intergenic | 40.0% |
| !! | CTGTATTGGGTAATGGAGTT+AGG | + | chr8_2:53487966-53487985 | None:intergenic | 40.0% |
| ACTCCATTACCCAATACAGA+TGG | - | chr8_2:53487967-53487986 | Msa1255090:intron | 40.0% | |
| ACAGCCAATTATTTGCCAGA+GGG | + | chr8_2:53488185-53488204 | None:intergenic | 40.0% | |
| !!! | GGAACTTTTTTGCATGTAGG+CGG | - | chr8_2:53488526-53488545 | Msa1255090:intron | 40.0% |
| TGTAGGCGGAAAAGAAGAAA+AGG | - | chr8_2:53488540-53488559 | Msa1255090:intron | 40.0% | |
| TAAAATGGCTGCAGTTGCAA+GGG | - | chr8_2:53488616-53488635 | Msa1255090:intron | 40.0% | |
| ! | GTTAATGCCGGTCAAGTTTT+TGG | - | chr8_2:53488736-53488755 | Msa1255090:intron | 40.0% |
| AATTGGCCCAAAAACTTGAC+CGG | + | chr8_2:53488746-53488765 | None:intergenic | 40.0% | |
| TTGTTCTACCTTACTCTGGA+CGG | - | chr8_2:53488899-53488918 | Msa1255090:five_prime_UTR | 40.0% | |
| TTAATTGGCTGAGAGAGGAG+AGG | + | chr8_2:53485815-53485834 | None:intergenic | 45.0% | |
| TCGTGTTAATTGGCTGAGAG+AGG | + | chr8_2:53485820-53485839 | None:intergenic | 45.0% | |
| CTTCGCATATTTCATAGCCC+GGG | + | chr8_2:53486078-53486097 | None:intergenic | 45.0% | |
| TGCTTTCTGCCACTGTCTAA+TGG | - | chr8_2:53486196-53486215 | Msa1255090:intron | 45.0% | |
| AGAATGAAACGGCAATGTGG+AGG | + | chr8_2:53486873-53486892 | None:intergenic | 45.0% | |
| AGTGGCTCAAAAAGGGAAGA+AGG | + | chr8_2:53486934-53486953 | None:intergenic | 45.0% | |
| GCTGTGAAAGTGGCTCAAAA+AGG | + | chr8_2:53486942-53486961 | None:intergenic | 45.0% | |
| TGTCTGTCAAGCTGTGAAAG+TGG | + | chr8_2:53486952-53486971 | None:intergenic | 45.0% | |
| TTTCGACGGGGTTTATCAGA+AGG | + | chr8_2:53486995-53487014 | None:intergenic | 45.0% | |
| GTGTGTTCAACCCAAGCATA+AGG | + | chr8_2:53487124-53487143 | None:intergenic | 45.0% | |
| GCTCCCTTGATTAGGCTTAT+TGG | + | chr8_2:53487167-53487186 | None:intergenic | 45.0% | |
| CTCTTGATGCTCCCTTGATT+AGG | + | chr8_2:53487175-53487194 | None:intergenic | 45.0% | |
| !! | CTAATCAAGGGAGCATCAAG+AGG | - | chr8_2:53487173-53487192 | Msa1255090:intron | 45.0% |
| GGAATGAGAAGAAACGCATG+AGG | - | chr8_2:53487197-53487216 | Msa1255090:intron | 45.0% | |
| ! | GGTGCTTGAGTTTGGAACAA+AGG | - | chr8_2:53487416-53487435 | Msa1255090:intron | 45.0% |
| !! | AACAAAGGTGTTGTCTGGAG+TGG | - | chr8_2:53487431-53487450 | Msa1255090:intron | 45.0% |
| GGACCATCTGTATTGGGTAA+TGG | + | chr8_2:53487973-53487992 | None:intergenic | 45.0% | |
| ATTTGAACGTGACAGCTGAG+AGG | - | chr8_2:53488095-53488114 | Msa1255090:intron | 45.0% | |
| TTTGAACGTGACAGCTGAGA+GGG | - | chr8_2:53488096-53488115 | Msa1255090:intron | 45.0% | |
| AGCCAATTATTTGCCAGAGG+GGG | + | chr8_2:53488183-53488202 | None:intergenic | 45.0% | |
| CAGCCAATTATTTGCCAGAG+GGG | + | chr8_2:53488184-53488203 | None:intergenic | 45.0% | |
| GACAGCCAATTATTTGCCAG+AGG | + | chr8_2:53488186-53488205 | None:intergenic | 45.0% | |
| TACAACTTCACAATGCGCTG+AGG | - | chr8_2:53488238-53488257 | Msa1255090:intron | 45.0% | |
| GCGCTGAGGCTAAATTGATT+TGG | - | chr8_2:53488252-53488271 | Msa1255090:intron | 45.0% | |
| AGCAGCAGCTGACAGATAAA+TGG | + | chr8_2:53488284-53488303 | None:intergenic | 45.0% | |
| AAGGAAAGCTCAGATGCAAG+AGG | - | chr8_2:53488559-53488578 | Msa1255090:intron | 45.0% | |
| GCGGAAGAAGAACGTTAAGA+AGG | - | chr8_2:53488586-53488605 | Msa1255090:intron | 45.0% | |
| GTAAAATGGCTGCAGTTGCA+AGG | - | chr8_2:53488615-53488634 | Msa1255090:intron | 45.0% | |
| AGTTGCAAGGGAAAGAGAGT+GGG | - | chr8_2:53488628-53488647 | Msa1255090:intron | 45.0% | |
| TGTTCTACCTTACTCTGGAC+GGG | - | chr8_2:53488900-53488919 | Msa1255090:five_prime_UTR | 45.0% | |
| TTTAACACCCGTCCAGAGTA+AGG | + | chr8_2:53488910-53488929 | None:intergenic | 45.0% | |
| ! | CACGCAACCCATCAGTTTTC+AGG | - | chr8_2:53485843-53485862 | Msa1255090:three_prime_UTR | 50.0% |
| CGTCCCTAGACATGTTCACT+TGG | + | chr8_2:53486135-53486154 | None:intergenic | 50.0% | |
| ! | GAGCTTAAGGTTAACGGACC+TGG | + | chr8_2:53486484-53486503 | None:intergenic | 50.0% |
| AGATTCGGAAGAGGAGTCCT+CGG | - | chr8_2:53486785-53486804 | Msa1255090:intron | 50.0% | |
| ACGACGAGAGTGAGATCAGA+GGG | + | chr8_2:53486823-53486842 | None:intergenic | 50.0% | |
| TGATCTCACTCTCGTCGTCA+AGG | - | chr8_2:53486825-53486844 | Msa1255090:intron | 50.0% | |
| AAGGGAAGAAGGAATTGGGG+TGG | + | chr8_2:53486923-53486942 | None:intergenic | 50.0% | |
| CTGATAAACCCCGTCGAAAG+CGG | - | chr8_2:53486996-53487015 | Msa1255090:intron | 50.0% | |
| TGATAAACCCCGTCGAAAGC+GGG | - | chr8_2:53486997-53487016 | Msa1255090:intron | 50.0% | |
| !! | GCTTGGGTTGAACACACAAC+TGG | - | chr8_2:53487127-53487146 | Msa1255090:intron | 50.0% |
| !! | ATCAAGGGAGCATCAAGAGG+AGG | - | chr8_2:53487176-53487195 | Msa1255090:intron | 50.0% |
| TGCCCCCTCTGGCAAATAAT+TGG | - | chr8_2:53488178-53488197 | Msa1255090:intron | 50.0% | |
| CTCAGATGCAAGAGGCTAAG+CGG | - | chr8_2:53488567-53488586 | Msa1255090:intron | 50.0% | |
| CAGTTGCAAGGGAAAGAGAG+TGG | - | chr8_2:53488627-53488646 | Msa1255090:intron | 50.0% | |
| AAGAGAGTGGGCAGAAAGAC+TGG | - | chr8_2:53488640-53488659 | Msa1255090:intron | 50.0% | |
| ATGCAAGCTCACCGTGCATA+TGG | + | chr8_2:53488971-53488990 | None:intergenic | 50.0% | |
| ! | AGGTTAACGGACCTGGACGA+AGG | + | chr8_2:53486477-53486496 | None:intergenic | 55.0% |
| GATTCGGAAGAGGAGTCCTC+GGG | - | chr8_2:53486786-53486805 | Msa1255090:intron | 55.0% | |
| ! | GAGGGCGTAAAACATTCCCG+AGG | + | chr8_2:53486805-53486824 | None:intergenic | 55.0% |
| GACGACGAGAGTGAGATCAG+AGG | + | chr8_2:53486824-53486843 | None:intergenic | 55.0% | |
| CTCACTCTCGTCGTCAAGGA+CGG | - | chr8_2:53486829-53486848 | Msa1255090:intron | 55.0% | |
| !! | GAATTGGGGTGGTTTGCTGC+CGG | + | chr8_2:53486912-53486931 | None:intergenic | 55.0% |
| TCAAGCTAGCCCGCTTTCGA+CGG | + | chr8_2:53487009-53487028 | None:intergenic | 55.0% | |
| AAGCAACGCAACGCACCAGA+GGG | + | chr8_2:53487034-53487053 | None:intergenic | 55.0% | |
| ! | TCGTCCAGGGCCTTATGCTT+GGG | - | chr8_2:53487111-53487130 | Msa1255090:intron | 55.0% |
| TCAACCCAAGCATAAGGCCC+TGG | + | chr8_2:53487118-53487137 | None:intergenic | 55.0% | |
| TGCCAGAGGGGGCAGTAATA+CGG | + | chr8_2:53488172-53488191 | None:intergenic | 55.0% | |
| GGTTGAATTGCAGCGCCTTG+AGG | - | chr8_2:53488661-53488680 | Msa1255090:intron | 55.0% | |
| TCACAGCAACACGGACCCAG+CGG | - | chr8_2:53485754-53485773 | Msa1255090:three_prime_UTR | 60.0% | |
| !! | AGCGACGGTTGGTTGGTGGT+GGG | + | chr8_2:53485790-53485809 | None:intergenic | 60.0% |
| AGAGGAGAGCGACGGTTGGT+TGG | + | chr8_2:53485797-53485816 | None:intergenic | 60.0% | |
| GAGAGAGGAGAGGAGAGCGA+CGG | + | chr8_2:53485805-53485824 | None:intergenic | 60.0% | |
| !! | GGTGGTTTGCTGCCGGAAGA+TGG | + | chr8_2:53486905-53486924 | None:intergenic | 60.0% |
| AAGCTAGCCCGCTTTCGACG+GGG | + | chr8_2:53487007-53487026 | None:intergenic | 60.0% | |
| CAAGCTAGCCCGCTTTCGAC+GGG | + | chr8_2:53487008-53487027 | None:intergenic | 60.0% | |
| GAAGCAACGCAACGCACCAG+AGG | + | chr8_2:53487035-53487054 | None:intergenic | 60.0% | |
| ! | GTCGTCCAGGGCCTTATGCT+TGG | - | chr8_2:53487110-53487129 | Msa1255090:intron | 60.0% |
| GCAGCGCCGTGCCTTTATAC+TGG | - | chr8_2:53487219-53487238 | Msa1255090:intron | 60.0% | |
| GTCCGTATTACTGCCCCCTC+TGG | - | chr8_2:53488167-53488186 | Msa1255090:intron | 60.0% | |
| !! | GGTTGGTTGGTGGTGGGTGG+CGG | + | chr8_2:53485784-53485803 | None:intergenic | 65.0% |
| !! | GACGGTTGGTTGGTGGTGGG+TGG | + | chr8_2:53485787-53485806 | None:intergenic | 65.0% |
| !! | GAGCGACGGTTGGTTGGTGG+TGG | + | chr8_2:53485791-53485810 | None:intergenic | 65.0% |
| ! | GGAGAGCGACGGTTGGTTGG+TGG | + | chr8_2:53485794-53485813 | None:intergenic | 65.0% |
| GAGGAGAGGAGAGCGACGGT+TGG | + | chr8_2:53485801-53485820 | None:intergenic | 65.0% | |
| !! | CGGGCTAGCTTGAGACCCTC+TGG | - | chr8_2:53487016-53487035 | Msa1255090:intron | 65.0% |
| !! | GGTTGGTGGTGGGTGGCGGT+GGG | + | chr8_2:53485780-53485799 | None:intergenic | 70.0% |
| !! | TGGTTGGTGGTGGGTGGCGG+TGG | + | chr8_2:53485781-53485800 | None:intergenic | 70.0% |
| !! | GTGGGTGGCGGTGGGCCGCT+GGG | + | chr8_2:53485772-53485791 | None:intergenic | 80.0% |
| !! | GGTGGGTGGCGGTGGGCCGC+TGG | + | chr8_2:53485773-53485792 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 53485702 | 53488995 | 53485702 | ID=Msa1255090;Name=Msa1255090 |
| chr8_2 | mRNA | 53485702 | 53488995 | 53485702 | ID=Msa1255090-mRNA-1;Parent=Msa1255090;Name=Msa1255090-mRNA-1;_AED=0.04;_eAED=0.04;_QI=178|1|1|1|0.66|0.5|4|286|180 |
| chr8_2 | exon | 53485702 | 53486152 | 53485702 | ID=Msa1255090-mRNA-1:exon:16536;Parent=Msa1255090-mRNA-1 |
| chr8_2 | exon | 53487457 | 53487578 | 53487457 | ID=Msa1255090-mRNA-1:exon:16535;Parent=Msa1255090-mRNA-1 |
| chr8_2 | exon | 53487660 | 53487930 | 53487660 | ID=Msa1255090-mRNA-1:exon:16534;Parent=Msa1255090-mRNA-1 |
| chr8_2 | exon | 53488833 | 53488995 | 53488833 | ID=Msa1255090-mRNA-1:exon:16533;Parent=Msa1255090-mRNA-1 |
| chr8_2 | five_prime_UTR | 53488833 | 53488995 | 53488833 | ID=Msa1255090-mRNA-1:five_prime_utr;Parent=Msa1255090-mRNA-1 |
| chr8_2 | five_prime_UTR | 53487916 | 53487930 | 53487916 | ID=Msa1255090-mRNA-1:five_prime_utr;Parent=Msa1255090-mRNA-1 |
| chr8_2 | CDS | 53487660 | 53487915 | 53487660 | ID=Msa1255090-mRNA-1:cds;Parent=Msa1255090-mRNA-1 |
| chr8_2 | CDS | 53487457 | 53487578 | 53487457 | ID=Msa1255090-mRNA-1:cds;Parent=Msa1255090-mRNA-1 |
| chr8_2 | CDS | 53485988 | 53486152 | 53485988 | ID=Msa1255090-mRNA-1:cds;Parent=Msa1255090-mRNA-1 |
| chr8_2 | three_prime_UTR | 53485702 | 53485987 | 53485702 | ID=Msa1255090-mRNA-1:three_prime_utr;Parent=Msa1255090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
