Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1229520 | XP_003626769.1 | 98.477 | 197 | 3 | 0 | 1 | 197 | 1 | 197 | 2.79e-137 | 392 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1229520 | sp|Q41000|ATP4_PEA | 83.249 | 197 | 33 | 0 | 1 | 197 | 1 | 197 | 2.01e-121 | 344 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0178860 | Msa1229520 | 0.828277 | 9.832102e-55 | -8.615850e-47 |
| Msa1229520 | Msa1255090 | 0.825967 | 3.511416e-54 | -8.615850e-47 |
| Msa1229520 | Msa1271970 | 0.829512 | 4.937816e-55 | -8.615850e-47 |
| Msa1229520 | Msa1295540 | 0.856450 | 3.191983e-62 | -8.615850e-47 |
| Msa1079730 | Msa1229520 | 0.816837 | 4.501385e-52 | -8.615850e-47 |
| Msa1168040 | Msa1229520 | 0.816881 | 4.399162e-52 | -8.615850e-47 |
| Msa1183100 | Msa1229520 | 0.881287 | 2.720051e-70 | -8.615850e-47 |
| Msa1202770 | Msa1229520 | 0.851567 | 8.161036e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1229520 | MtrunA17_Chr8g0336611 | 98.477 | 197 | 3 | 0 | 1 | 197 | 1 | 197 | 2.57e-141 | 392 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1229520 | AT5G47030.1 | 70.732 | 205 | 50 | 3 | 1 | 197 | 1 | 203 | 4.59e-101 | 290 |
Find 78 sgRNAs with CRISPR-Local
Find 329 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGCTCGATAAATATATTT+TGG | 0.135543 | 8_2:-5240450 | Msa1229520:three_prime_UTR |
| GCCACTGCTTACAAAATATT+TGG | 0.143612 | 8_2:+5240864 | None:intergenic |
| TTGTCGCTGAACTGAGCTTC+TGG | 0.214226 | 8_2:+5240734 | None:intergenic |
| CAATGTCTTGCTCAACTTCC+TGG | 0.279784 | 8_2:+5240485 | None:intergenic |
| CAGTTCAGCGACAACTGATT+TGG | 0.280457 | 8_2:-5240725 | Msa1229520:CDS |
| GTCTTAGGTGGATCAAGATT+GGG | 0.302329 | 8_2:+5242393 | None:intergenic |
| AGTTTGGTGGGAAGAGTAGA+AGG | 0.331246 | 8_2:+5242336 | None:intergenic |
| ATGAAAGCGAGGGGTGTCTT+AGG | 0.331865 | 8_2:+5242378 | None:intergenic |
| TTGTGTTGAAACCGAATTGA+TGG | 0.351479 | 8_2:-5240539 | Msa1229520:three_prime_UTR |
| AACGAAATTGACAGTGAGTT+TGG | 0.358806 | 8_2:+5242320 | None:intergenic |
| CCCATCTGGCCTGTTGTAGC+TGG | 0.367328 | 8_2:+5240964 | None:intergenic |
| CGGCGGAACATGGTGGTTGT+AGG | 0.371476 | 8_2:+5242525 | None:intergenic |
| GCAATTGTTGCAACATGTCC+TGG | 0.384614 | 8_2:+5240934 | None:intergenic |
| CGCTGTTGAGGCTGTTCCAC+TGG | 0.397290 | 8_2:-5240803 | Msa1229520:CDS |
| TGTCTTAGGTGGATCAAGAT+TGG | 0.399583 | 8_2:+5242392 | None:intergenic |
| CTCAACTTCCTGGAGCTAGA+TGG | 0.402775 | 8_2:+5240495 | None:intergenic |
| GTGGGAAGAGTAGAAGGAAT+AGG | 0.422638 | 8_2:+5242342 | None:intergenic |
| TTACACTGAGACAAAATAAC+CGG | 0.422856 | 8_2:+5240595 | None:intergenic |
| GGTTGTAGGGTTAGATCGCT+CGG | 0.425264 | 8_2:+5242539 | None:intergenic |
| AATATATTATTCCATCAATT+CGG | 0.428569 | 8_2:+5240528 | None:intergenic |
| ATTCCTCCTTCGTTGAAGCT+TGG | 0.449450 | 8_2:-5242428 | Msa1229520:CDS |
| GAGAGTGTGAAAGAGAGAAT+AGG | 0.450880 | 8_2:+5242625 | None:intergenic |
| GAGAAAGCTGAAGCTCAGAT+TGG | 0.456466 | 8_2:-5240703 | Msa1229520:CDS |
| TTCTCAATTGTCCGCTAAAG+AGG | 0.456746 | 8_2:-5242286 | Msa1229520:intron |
| TGTCGCTGAACTGAGCTTCT+GGG | 0.464302 | 8_2:+5240735 | None:intergenic |
| GTTATAATCCCAGCTACAAC+AGG | 0.464443 | 8_2:-5240973 | Msa1229520:CDS |
| GCGGACAATTGAGAAGCATA+AGG | 0.477432 | 8_2:+5242294 | None:intergenic |
| ACAATTGCAGAGTTGAAACC+TGG | 0.489060 | 8_2:-5240919 | Msa1229520:CDS |
| AACAACTTCCATCTAGCTCC+AGG | 0.491686 | 8_2:-5240503 | Msa1229520:three_prime_UTR |
| GGAGAAGCGGCGAGTGGCGA+CGG | 0.501137 | 8_2:+5242476 | None:intergenic |
| CCATCTGGCCTGTTGTAGCT+GGG | 0.501802 | 8_2:+5240965 | None:intergenic |
| TGGCGACGGCGCGTGAGAGA+AGG | 0.505897 | 8_2:+5242490 | None:intergenic |
| CCCAGCTACAACAGGCCAGA+TGG | 0.507781 | 8_2:-5240965 | Msa1229520:CDS |
| TGATGCAAGCCTTGTGCAGA+AGG | 0.512823 | 8_2:-5240773 | Msa1229520:CDS |
| GGCGGAACATGGTGGTTGTA+GGG | 0.514248 | 8_2:+5242526 | None:intergenic |
| GTCCTGGGAGAATACCCATC+TGG | 0.526235 | 8_2:+5240950 | None:intergenic |
| CTTGAAGACCCTTCTGCACA+AGG | 0.528902 | 8_2:+5240764 | None:intergenic |
| GGCCAGATGGGTATTCTCCC+AGG | 0.530017 | 8_2:-5240952 | Msa1229520:CDS |
| TATCAGCAACAGAGTTTGCA+TGG | 0.530676 | 8_2:+5240830 | None:intergenic |
| GTGTGAAAGAGAGAATAGGA+TGG | 0.534366 | 8_2:+5242629 | None:intergenic |
| TCTTGAACAATCATGACCCC+AGG | 0.538151 | 8_2:+5240901 | None:intergenic |
| ACGAAGGAGGAATCAGTGAC+GGG | 0.543173 | 8_2:+5242438 | None:intergenic |
| GGCGACGGCGCGTGAGAGAA+GGG | 0.548935 | 8_2:+5242491 | None:intergenic |
| AAAGTTCAACTACAGGACTT+AGG | 0.553646 | 8_2:+5240642 | None:intergenic |
| AGATGTAGCGCGGCGGAACA+TGG | 0.556781 | 8_2:+5242515 | None:intergenic |
| GGGGTCATGATTGTTCAAGA+AGG | 0.558557 | 8_2:-5240898 | Msa1229520:CDS |
| GGAAGAGTAGAAGGAATAGG+AGG | 0.562952 | 8_2:+5242345 | None:intergenic |
| CCAGCTACAACAGGCCAGAT+GGG | 0.564262 | 8_2:-5240964 | Msa1229520:CDS |
| GTTGTAGGGTTAGATCGCTC+GGG | 0.565112 | 8_2:+5242540 | None:intergenic |
| CTTGCATCAATTTGATCCAG+TGG | 0.565593 | 8_2:+5240787 | None:intergenic |
| TTTATTCCAAGCTTCAACGA+AGG | 0.567962 | 8_2:+5242422 | None:intergenic |
| ATTCCAAGCTTCAACGAAGG+AGG | 0.569149 | 8_2:+5242425 | None:intergenic |
| GAAGAAATGAACCTCTTTAG+CGG | 0.579872 | 8_2:+5242275 | None:intergenic |
| AAATTGACAGTGAGTTTGGT+GGG | 0.582688 | 8_2:+5242324 | None:intergenic |
| AAAGCGAGGGGTGTCTTAGG+TGG | 0.584645 | 8_2:+5242381 | None:intergenic |
| GGGTCATGATTGTTCAAGAA+GGG | 0.585450 | 8_2:-5240897 | Msa1229520:CDS |
| AACGAAGGAGGAATCAGTGA+CGG | 0.589978 | 8_2:+5242437 | None:intergenic |
| TAGCTACATCGGTGGAGAAG+CGG | 0.592259 | 8_2:+5242463 | None:intergenic |
| GACGAGATTTGATGAAAGCG+AGG | 0.592477 | 8_2:+5242367 | None:intergenic |
| GAAATTGACAGTGAGTTTGG+TGG | 0.611076 | 8_2:+5242323 | None:intergenic |
| ATCGGTGGAGAAGCGGCGAG+TGG | 0.614140 | 8_2:+5242470 | None:intergenic |
| ACGAGATTTGATGAAAGCGA+GGG | 0.617554 | 8_2:+5242368 | None:intergenic |
| TACACTGAGACAAAATAACC+GGG | 0.620474 | 8_2:+5240596 | None:intergenic |
| CAATTGCAGAGTTGAAACCT+GGG | 0.627022 | 8_2:-5240918 | Msa1229520:CDS |
| CAATTGTTGCAACATGTCCT+GGG | 0.627841 | 8_2:+5240935 | None:intergenic |
| TCTTAGGTGGATCAAGATTG+GGG | 0.630644 | 8_2:+5242394 | None:intergenic |
| TGCTGATATAATCGCTGTTG+AGG | 0.643815 | 8_2:-5240815 | Msa1229520:CDS |
| CACTGAGACAAAATAACCGG+GGG | 0.645820 | 8_2:+5240598 | None:intergenic |
| CGAAGGAGGAATCAGTGACG+GGG | 0.648705 | 8_2:+5242439 | None:intergenic |
| GATGCAAGCCTTGTGCAGAA+GGG | 0.670616 | 8_2:-5240772 | Msa1229520:CDS |
| CGAGATTTGATGAAAGCGAG+GGG | 0.674012 | 8_2:+5242369 | None:intergenic |
| TGTAGCGCGGCGGAACATGG+TGG | 0.700595 | 8_2:+5242518 | None:intergenic |
| ACACTGAGACAAAATAACCG+GGG | 0.711170 | 8_2:+5240597 | None:intergenic |
| AGAGAAGGGAAGATGTAGCG+CGG | 0.716986 | 8_2:+5242505 | None:intergenic |
| GAAGGAGGAATCAGTGACGG+GGG | 0.719279 | 8_2:+5242440 | None:intergenic |
| AATTGCAGAGTTGAAACCTG+GGG | 0.727229 | 8_2:-5240917 | Msa1229520:CDS |
| GAAGGGAAGATGTAGCGCGG+CGG | 0.762683 | 8_2:+5242508 | None:intergenic |
| ACTGAGACAAAATAACCGGG+GGG | 0.790589 | 8_2:+5240599 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAACAATATATAAAAAGA+AGG | + | chr8_2:5241528-5241547 | None:intergenic | 10.0% |
| !!! | CTTTTTATATATTGTTATAA+TGG | - | chr8_2:5241529-5241548 | Msa1229520:intron | 10.0% |
| !! | TATAACAATATATAAAAAGA+AGG | + | chr8_2:5241528-5241547 | None:intergenic | 10.0% |
| !!! | CTTTTTATATATTGTTATAA+TGG | - | chr8_2:5241529-5241548 | Msa1229520:intron | 10.0% |
| !!! | ATTGGTAAATTTTGAAAAAA+AGG | - | chr8_2:5241690-5241709 | Msa1229520:intron | 15.0% |
| !! | AATATATTATTCCATCAATT+CGG | + | chr8_2:5242542-5242561 | None:intergenic | 15.0% |
| !!! | ATTGGTAAATTTTGAAAAAA+AGG | - | chr8_2:5241690-5241709 | Msa1229520:intron | 15.0% |
| !! | AATATATTATTCCATCAATT+CGG | + | chr8_2:5242542-5242561 | None:intergenic | 15.0% |
| !! | CAAATCTGAATGAAAATTTA+GGG | + | chr8_2:5240817-5240836 | None:intergenic | 20.0% |
| !! | ACAAATCTGAATGAAAATTT+AGG | + | chr8_2:5240818-5240837 | None:intergenic | 20.0% |
| !! | TTAAATCTGAATTAGTGAAT+TGG | - | chr8_2:5240979-5240998 | Msa1229520:CDS | 20.0% |
| !!! | AATTGGCATTATTTTGAAAT+TGG | - | chr8_2:5240996-5241015 | Msa1229520:intron | 20.0% |
| !! | TTCTCTATCAATAATGTAAA+TGG | + | chr8_2:5241564-5241583 | None:intergenic | 20.0% |
| !!! | ACCTAATAGAATATTTTACT+AGG | - | chr8_2:5241890-5241909 | Msa1229520:intron | 20.0% |
| !!! | CCTAATAGAATATTTTACTA+GGG | - | chr8_2:5241891-5241910 | Msa1229520:intron | 20.0% |
| !! | TGTCAGTTTAATTATCTATA+TGG | - | chr8_2:5241927-5241946 | Msa1229520:intron | 20.0% |
| !! | AAAAGAAAAAAATAACCACA+GGG | + | chr8_2:5241999-5242018 | None:intergenic | 20.0% |
| !!! | ATGACACAATTTAGTTTTAT+AGG | - | chr8_2:5242063-5242082 | Msa1229520:intron | 20.0% |
| !!! | AAAGCTCGATAAATATATTT+TGG | - | chr8_2:5242617-5242636 | Msa1229520:five_prime_UTR | 20.0% |
| !! | CAAATCTGAATGAAAATTTA+GGG | + | chr8_2:5240817-5240836 | None:intergenic | 20.0% |
| !! | ACAAATCTGAATGAAAATTT+AGG | + | chr8_2:5240818-5240837 | None:intergenic | 20.0% |
| !! | TTAAATCTGAATTAGTGAAT+TGG | - | chr8_2:5240979-5240998 | Msa1229520:CDS | 20.0% |
| !!! | AATTGGCATTATTTTGAAAT+TGG | - | chr8_2:5240996-5241015 | Msa1229520:intron | 20.0% |
| !! | TTCTCTATCAATAATGTAAA+TGG | + | chr8_2:5241564-5241583 | None:intergenic | 20.0% |
| !!! | ACCTAATAGAATATTTTACT+AGG | - | chr8_2:5241890-5241909 | Msa1229520:intron | 20.0% |
| !!! | CCTAATAGAATATTTTACTA+GGG | - | chr8_2:5241891-5241910 | Msa1229520:intron | 20.0% |
| !! | TGTCAGTTTAATTATCTATA+TGG | - | chr8_2:5241927-5241946 | Msa1229520:intron | 20.0% |
| !! | AAAAGAAAAAAATAACCACA+GGG | + | chr8_2:5241999-5242018 | None:intergenic | 20.0% |
| !!! | ATGACACAATTTAGTTTTAT+AGG | - | chr8_2:5242063-5242082 | Msa1229520:intron | 20.0% |
| !!! | AAAGCTCGATAAATATATTT+TGG | - | chr8_2:5242617-5242636 | Msa1229520:five_prime_UTR | 20.0% |
| !! | TTGTGAGATTTTAGATGATT+TGG | - | chr8_2:5240890-5240909 | Msa1229520:CDS | 25.0% |
| !!! | TTGGTTTTGATTTGTGTTTT+TGG | - | chr8_2:5240909-5240928 | Msa1229520:CDS | 25.0% |
| !!! | TGGTTTTGATTTGTGTTTTT+GGG | - | chr8_2:5240910-5240929 | Msa1229520:CDS | 25.0% |
| !! | ATTTTTGCAAATTGGTGAAT+TGG | - | chr8_2:5240938-5240957 | Msa1229520:CDS | 25.0% |
| !! | TTTTTGCAAATTGGTGAATT+GGG | - | chr8_2:5240939-5240958 | Msa1229520:CDS | 25.0% |
| ! | TTTCTTGTCAAACTATTAAG+AGG | - | chr8_2:5241300-5241319 | Msa1229520:intron | 25.0% |
| ! | TACATAATTCGAAGGTTTAT+AGG | + | chr8_2:5241462-5241481 | None:intergenic | 25.0% |
| ! | TTGGATAAAAACACTACTAA+AGG | + | chr8_2:5241610-5241629 | None:intergenic | 25.0% |
| !! | CAATCTTTTCATCACTTTAT+TGG | + | chr8_2:5241629-5241648 | None:intergenic | 25.0% |
| ! | CCCTAGTAAAATATTCTATT+AGG | + | chr8_2:5241894-5241913 | None:intergenic | 25.0% |
| ! | AATAAATTAGATCACCAACT+TGG | + | chr8_2:5241954-5241973 | None:intergenic | 25.0% |
| ! | GAAAAGAAAAAAATAACCAC+AGG | + | chr8_2:5242000-5242019 | None:intergenic | 25.0% |
| !!! | TAAATTGTGTCATTTTCCAA+GGG | + | chr8_2:5242056-5242075 | None:intergenic | 25.0% |
| !!! | TTTAGTTTTATAGGTTGATC+TGG | - | chr8_2:5242072-5242091 | Msa1229520:intron | 25.0% |
| ! | AAAAAGTAAAGTTCAACTAC+AGG | + | chr8_2:5242435-5242454 | None:intergenic | 25.0% |
| !! | TTGTGAGATTTTAGATGATT+TGG | - | chr8_2:5240890-5240909 | Msa1229520:CDS | 25.0% |
| !!! | TTGGTTTTGATTTGTGTTTT+TGG | - | chr8_2:5240909-5240928 | Msa1229520:CDS | 25.0% |
| !!! | TGGTTTTGATTTGTGTTTTT+GGG | - | chr8_2:5240910-5240929 | Msa1229520:CDS | 25.0% |
| !! | ATTTTTGCAAATTGGTGAAT+TGG | - | chr8_2:5240938-5240957 | Msa1229520:CDS | 25.0% |
| !! | TTTTTGCAAATTGGTGAATT+GGG | - | chr8_2:5240939-5240958 | Msa1229520:CDS | 25.0% |
| ! | TTTCTTGTCAAACTATTAAG+AGG | - | chr8_2:5241300-5241319 | Msa1229520:intron | 25.0% |
| ! | TACATAATTCGAAGGTTTAT+AGG | + | chr8_2:5241462-5241481 | None:intergenic | 25.0% |
| ! | TTGGATAAAAACACTACTAA+AGG | + | chr8_2:5241610-5241629 | None:intergenic | 25.0% |
| !! | CAATCTTTTCATCACTTTAT+TGG | + | chr8_2:5241629-5241648 | None:intergenic | 25.0% |
| ! | CCCTAGTAAAATATTCTATT+AGG | + | chr8_2:5241894-5241913 | None:intergenic | 25.0% |
| ! | AATAAATTAGATCACCAACT+TGG | + | chr8_2:5241954-5241973 | None:intergenic | 25.0% |
| ! | GAAAAGAAAAAAATAACCAC+AGG | + | chr8_2:5242000-5242019 | None:intergenic | 25.0% |
| !!! | TAAATTGTGTCATTTTCCAA+GGG | + | chr8_2:5242056-5242075 | None:intergenic | 25.0% |
| !!! | TTTAGTTTTATAGGTTGATC+TGG | - | chr8_2:5242072-5242091 | Msa1229520:intron | 25.0% |
| ! | AAAAAGTAAAGTTCAACTAC+AGG | + | chr8_2:5242435-5242454 | None:intergenic | 25.0% |
| !! | GTTCTTGTTATTGTTGTTGA+TGG | - | chr8_2:5240836-5240855 | Msa1229520:CDS | 30.0% |
| AATTGGGATTATTGTGGATT+AGG | - | chr8_2:5240955-5240974 | Msa1229520:CDS | 30.0% | |
| ! | ATTGGGATTATTGTGGATTA+GGG | - | chr8_2:5240956-5240975 | Msa1229520:CDS | 30.0% |
| ! | AGCTACTTTGTGTTTGTTTA+AGG | - | chr8_2:5241079-5241098 | Msa1229520:intron | 30.0% |
| ! | GCTACTTTGTGTTTGTTTAA+GGG | - | chr8_2:5241080-5241099 | Msa1229520:intron | 30.0% |
| AACTCCAATTGTGTAAAAGA+TGG | - | chr8_2:5241168-5241187 | Msa1229520:intron | 30.0% | |
| ! | TCTACCATCTTTTACACAAT+TGG | + | chr8_2:5241175-5241194 | None:intergenic | 30.0% |
| AGGAGAGTAAATCAAATGAA+AGG | - | chr8_2:5241240-5241259 | Msa1229520:intron | 30.0% | |
| GTCAAACTATTAAGAGGATT+TGG | - | chr8_2:5241306-5241325 | Msa1229520:intron | 30.0% | |
| AACTAAAACCCTTTCTTACT+AGG | + | chr8_2:5241406-5241425 | None:intergenic | 30.0% | |
| !! | AGTTGTTGTTAAGTGTCTTT+TGG | - | chr8_2:5241428-5241447 | Msa1229520:intron | 30.0% |
| ! | CGTGATTATATTTTGTACAC+AGG | + | chr8_2:5241499-5241518 | None:intergenic | 30.0% |
| CTACTAGAACATATGTTTCA+TGG | - | chr8_2:5241757-5241776 | Msa1229520:intron | 30.0% | |
| !!! | ATCAACATTTTTTCACAGTG+TGG | + | chr8_2:5241863-5241882 | None:intergenic | 30.0% |
| ACACTGTGAAAAAATGTTGA+TGG | - | chr8_2:5241862-5241881 | Msa1229520:intron | 30.0% | |
| ATTATCTATATGGACCAAGT+TGG | - | chr8_2:5241937-5241956 | Msa1229520:intron | 30.0% | |
| !!! | CTAAATTGTGTCATTTTCCA+AGG | + | chr8_2:5242057-5242076 | None:intergenic | 30.0% |
| ! | ACCAAATATTTTGTAAGCAG+TGG | - | chr8_2:5242202-5242221 | Msa1229520:intron | 30.0% |
| TTACACTGAGACAAAATAAC+CGG | + | chr8_2:5242475-5242494 | None:intergenic | 30.0% | |
| TTGTGAAATTGTAAGCAATG+TGG | + | chr8_2:5240418-5240437 | None:intergenic | 30.0% | |
| !! | GTTCTTGTTATTGTTGTTGA+TGG | - | chr8_2:5240836-5240855 | Msa1229520:CDS | 30.0% |
| AATTGGGATTATTGTGGATT+AGG | - | chr8_2:5240955-5240974 | Msa1229520:CDS | 30.0% | |
| ! | ATTGGGATTATTGTGGATTA+GGG | - | chr8_2:5240956-5240975 | Msa1229520:CDS | 30.0% |
| ! | AGCTACTTTGTGTTTGTTTA+AGG | - | chr8_2:5241079-5241098 | Msa1229520:intron | 30.0% |
| ! | GCTACTTTGTGTTTGTTTAA+GGG | - | chr8_2:5241080-5241099 | Msa1229520:intron | 30.0% |
| AACTCCAATTGTGTAAAAGA+TGG | - | chr8_2:5241168-5241187 | Msa1229520:intron | 30.0% | |
| ! | TCTACCATCTTTTACACAAT+TGG | + | chr8_2:5241175-5241194 | None:intergenic | 30.0% |
| AGGAGAGTAAATCAAATGAA+AGG | - | chr8_2:5241240-5241259 | Msa1229520:intron | 30.0% | |
| GTCAAACTATTAAGAGGATT+TGG | - | chr8_2:5241306-5241325 | Msa1229520:intron | 30.0% | |
| AACTAAAACCCTTTCTTACT+AGG | + | chr8_2:5241406-5241425 | None:intergenic | 30.0% | |
| !! | AGTTGTTGTTAAGTGTCTTT+TGG | - | chr8_2:5241428-5241447 | Msa1229520:intron | 30.0% |
| ! | CGTGATTATATTTTGTACAC+AGG | + | chr8_2:5241499-5241518 | None:intergenic | 30.0% |
| CTACTAGAACATATGTTTCA+TGG | - | chr8_2:5241757-5241776 | Msa1229520:intron | 30.0% | |
| !!! | ATCAACATTTTTTCACAGTG+TGG | + | chr8_2:5241863-5241882 | None:intergenic | 30.0% |
| ACACTGTGAAAAAATGTTGA+TGG | - | chr8_2:5241862-5241881 | Msa1229520:intron | 30.0% | |
| ATTATCTATATGGACCAAGT+TGG | - | chr8_2:5241937-5241956 | Msa1229520:intron | 30.0% | |
| !!! | CTAAATTGTGTCATTTTCCA+AGG | + | chr8_2:5242057-5242076 | None:intergenic | 30.0% |
| ! | ACCAAATATTTTGTAAGCAG+TGG | - | chr8_2:5242202-5242221 | Msa1229520:intron | 30.0% |
| TTACACTGAGACAAAATAAC+CGG | + | chr8_2:5242475-5242494 | None:intergenic | 30.0% | |
| TTTATTCCAAGCTTCAACGA+AGG | + | chr8_2:5240648-5240667 | None:intergenic | 35.0% | |
| AAATTGACAGTGAGTTTGGT+GGG | + | chr8_2:5240746-5240765 | None:intergenic | 35.0% | |
| AACGAAATTGACAGTGAGTT+TGG | + | chr8_2:5240750-5240769 | None:intergenic | 35.0% | |
| GAAGAAATGAACCTCTTTAG+CGG | + | chr8_2:5240795-5240814 | None:intergenic | 35.0% | |
| TTGGTGAATTGGGATTATTG+TGG | - | chr8_2:5240949-5240968 | Msa1229520:CDS | 35.0% | |
| AGATGGTAGAGTTTCATCAT+AGG | - | chr8_2:5241185-5241204 | Msa1229520:intron | 35.0% | |
| GATGGTAGAGTTTCATCATA+GGG | - | chr8_2:5241186-5241205 | Msa1229520:intron | 35.0% | |
| ATGGTAGAGTTTCATCATAG+GGG | - | chr8_2:5241187-5241206 | Msa1229520:intron | 35.0% | |
| ! | AAAGGTACACCAATAGTTAG+TGG | - | chr8_2:5241258-5241277 | Msa1229520:intron | 35.0% |
| TGGACAGATACATAATTCGA+AGG | + | chr8_2:5241470-5241489 | None:intergenic | 35.0% | |
| ! | ATTTTGTACACAGGTTGTAG+TGG | + | chr8_2:5241490-5241509 | None:intergenic | 35.0% |
| ATTACTGCTAGAACATGCAT+TGG | - | chr8_2:5241672-5241691 | Msa1229520:intron | 35.0% | |
| ! | AGTAGTCGCTTCTTTTATCA+TGG | + | chr8_2:5241742-5241761 | None:intergenic | 35.0% |
| ATGTTTCATGGCACACTATT+TGG | - | chr8_2:5241769-5241788 | Msa1229520:intron | 35.0% | |
| AATCGTACAAATCTGTGTGA+TGG | - | chr8_2:5241808-5241827 | Msa1229520:intron | 35.0% | |
| ATGGTCATTCTTAATCCTTG+TGG | - | chr8_2:5241827-5241846 | Msa1229520:intron | 35.0% | |
| !!! | TTTTTTCACAGTGTGGTTCA+TGG | + | chr8_2:5241856-5241875 | None:intergenic | 35.0% |
| AAAAAAATAACCACAGGGCA+GGG | + | chr8_2:5241994-5242013 | None:intergenic | 35.0% | |
| TTCCTTAATTCTTCTTCCCT+TGG | - | chr8_2:5242037-5242056 | Msa1229520:intron | 35.0% | |
| TTCCAAGGGAAGAAGAATTA+AGG | + | chr8_2:5242042-5242061 | None:intergenic | 35.0% | |
| GCCACTGCTTACAAAATATT+TGG | + | chr8_2:5242206-5242225 | None:intergenic | 35.0% | |
| AAAGTTCAACTACAGGACTT+AGG | + | chr8_2:5242428-5242447 | None:intergenic | 35.0% | |
| TACACTGAGACAAAATAACC+GGG | + | chr8_2:5242474-5242493 | None:intergenic | 35.0% | |
| TTGTGTTGAAACCGAATTGA+TGG | - | chr8_2:5242528-5242547 | Msa1229520:exon | 35.0% | |
| TTTATTCCAAGCTTCAACGA+AGG | + | chr8_2:5240648-5240667 | None:intergenic | 35.0% | |
| AAATTGACAGTGAGTTTGGT+GGG | + | chr8_2:5240746-5240765 | None:intergenic | 35.0% | |
| AACGAAATTGACAGTGAGTT+TGG | + | chr8_2:5240750-5240769 | None:intergenic | 35.0% | |
| GAAGAAATGAACCTCTTTAG+CGG | + | chr8_2:5240795-5240814 | None:intergenic | 35.0% | |
| TTGGTGAATTGGGATTATTG+TGG | - | chr8_2:5240949-5240968 | Msa1229520:CDS | 35.0% | |
| AGATGGTAGAGTTTCATCAT+AGG | - | chr8_2:5241185-5241204 | Msa1229520:intron | 35.0% | |
| GATGGTAGAGTTTCATCATA+GGG | - | chr8_2:5241186-5241205 | Msa1229520:intron | 35.0% | |
| ATGGTAGAGTTTCATCATAG+GGG | - | chr8_2:5241187-5241206 | Msa1229520:intron | 35.0% | |
| ! | AAAGGTACACCAATAGTTAG+TGG | - | chr8_2:5241258-5241277 | Msa1229520:intron | 35.0% |
| TGGACAGATACATAATTCGA+AGG | + | chr8_2:5241470-5241489 | None:intergenic | 35.0% | |
| ! | ATTTTGTACACAGGTTGTAG+TGG | + | chr8_2:5241490-5241509 | None:intergenic | 35.0% |
| ATTACTGCTAGAACATGCAT+TGG | - | chr8_2:5241672-5241691 | Msa1229520:intron | 35.0% | |
| ! | AGTAGTCGCTTCTTTTATCA+TGG | + | chr8_2:5241742-5241761 | None:intergenic | 35.0% |
| ATGTTTCATGGCACACTATT+TGG | - | chr8_2:5241769-5241788 | Msa1229520:intron | 35.0% | |
| AATCGTACAAATCTGTGTGA+TGG | - | chr8_2:5241808-5241827 | Msa1229520:intron | 35.0% | |
| ATGGTCATTCTTAATCCTTG+TGG | - | chr8_2:5241827-5241846 | Msa1229520:intron | 35.0% | |
| !!! | TTTTTTCACAGTGTGGTTCA+TGG | + | chr8_2:5241856-5241875 | None:intergenic | 35.0% |
| AAAAAAATAACCACAGGGCA+GGG | + | chr8_2:5241994-5242013 | None:intergenic | 35.0% | |
| TTCCTTAATTCTTCTTCCCT+TGG | - | chr8_2:5242037-5242056 | Msa1229520:intron | 35.0% | |
| TTCCAAGGGAAGAAGAATTA+AGG | + | chr8_2:5242042-5242061 | None:intergenic | 35.0% | |
| GCCACTGCTTACAAAATATT+TGG | + | chr8_2:5242206-5242225 | None:intergenic | 35.0% | |
| AAAGTTCAACTACAGGACTT+AGG | + | chr8_2:5242428-5242447 | None:intergenic | 35.0% | |
| TACACTGAGACAAAATAACC+GGG | + | chr8_2:5242474-5242493 | None:intergenic | 35.0% | |
| TTGTGTTGAAACCGAATTGA+TGG | - | chr8_2:5242528-5242547 | Msa1229520:exon | 35.0% | |
| GTGTGAAAGAGAGAATAGGA+TGG | + | chr8_2:5240441-5240460 | None:intergenic | 40.0% | |
| ! | GAGAGTGTGAAAGAGAGAAT+AGG | + | chr8_2:5240445-5240464 | None:intergenic | 40.0% |
| TCTTAGGTGGATCAAGATTG+GGG | + | chr8_2:5240676-5240695 | None:intergenic | 40.0% | |
| GTCTTAGGTGGATCAAGATT+GGG | + | chr8_2:5240677-5240696 | None:intergenic | 40.0% | |
| TGTCTTAGGTGGATCAAGAT+TGG | + | chr8_2:5240678-5240697 | None:intergenic | 40.0% | |
| ACGAGATTTGATGAAAGCGA+GGG | + | chr8_2:5240702-5240721 | None:intergenic | 40.0% | |
| GAAATTGACAGTGAGTTTGG+TGG | + | chr8_2:5240747-5240766 | None:intergenic | 40.0% | |
| TTCTCAATTGTCCGCTAAAG+AGG | - | chr8_2:5240781-5240800 | Msa1229520:CDS | 40.0% | |
| ! | GGGTCTGCATTTTTGCAAAT+TGG | - | chr8_2:5240930-5240949 | Msa1229520:CDS | 40.0% |
| TGGTAGAGTTTCATCATAGG+GGG | - | chr8_2:5241188-5241207 | Msa1229520:intron | 40.0% | |
| TTGACCACACCTAGTAAGAA+AGG | - | chr8_2:5241394-5241413 | Msa1229520:intron | 40.0% | |
| TGACCACACCTAGTAAGAAA+GGG | - | chr8_2:5241395-5241414 | Msa1229520:intron | 40.0% | |
| AAACCCTTTCTTACTAGGTG+TGG | + | chr8_2:5241401-5241420 | None:intergenic | 40.0% | |
| TTTCATGGCACACTATTTGG+AGG | - | chr8_2:5241772-5241791 | Msa1229520:intron | 40.0% | |
| AGATTTGTACGATTGCTGCA+TGG | + | chr8_2:5241802-5241821 | None:intergenic | 40.0% | |
| GAAAAAAATAACCACAGGGC+AGG | + | chr8_2:5241995-5242014 | None:intergenic | 40.0% | |
| GTTATAATCCCAGCTACAAC+AGG | - | chr8_2:5242094-5242113 | Msa1229520:intron | 40.0% | |
| CAATTGTTGCAACATGTCCT+GGG | + | chr8_2:5242135-5242154 | None:intergenic | 40.0% | |
| ACAATTGCAGAGTTGAAACC+TGG | - | chr8_2:5242148-5242167 | Msa1229520:intron | 40.0% | |
| CAATTGCAGAGTTGAAACCT+GGG | - | chr8_2:5242149-5242168 | Msa1229520:intron | 40.0% | |
| AATTGCAGAGTTGAAACCTG+GGG | - | chr8_2:5242150-5242169 | Msa1229520:intron | 40.0% | |
| GGGTCATGATTGTTCAAGAA+GGG | - | chr8_2:5242170-5242189 | Msa1229520:intron | 40.0% | |
| TATCAGCAACAGAGTTTGCA+TGG | + | chr8_2:5242240-5242259 | None:intergenic | 40.0% | |
| TGCTGATATAATCGCTGTTG+AGG | - | chr8_2:5242252-5242271 | Msa1229520:intron | 40.0% | |
| CTTGCATCAATTTGATCCAG+TGG | + | chr8_2:5242283-5242302 | None:intergenic | 40.0% | |
| ! | TTGAGTTGTTTATTTCCCCC+CGG | - | chr8_2:5242453-5242472 | Msa1229520:CDS | 40.0% |
| ACACTGAGACAAAATAACCG+GGG | + | chr8_2:5242473-5242492 | None:intergenic | 40.0% | |
| GTGTGAAAGAGAGAATAGGA+TGG | + | chr8_2:5240441-5240460 | None:intergenic | 40.0% | |
| ! | GAGAGTGTGAAAGAGAGAAT+AGG | + | chr8_2:5240445-5240464 | None:intergenic | 40.0% |
| TCTTAGGTGGATCAAGATTG+GGG | + | chr8_2:5240676-5240695 | None:intergenic | 40.0% | |
| GTCTTAGGTGGATCAAGATT+GGG | + | chr8_2:5240677-5240696 | None:intergenic | 40.0% | |
| TGTCTTAGGTGGATCAAGAT+TGG | + | chr8_2:5240678-5240697 | None:intergenic | 40.0% | |
| ACGAGATTTGATGAAAGCGA+GGG | + | chr8_2:5240702-5240721 | None:intergenic | 40.0% | |
| GAAATTGACAGTGAGTTTGG+TGG | + | chr8_2:5240747-5240766 | None:intergenic | 40.0% | |
| TTCTCAATTGTCCGCTAAAG+AGG | - | chr8_2:5240781-5240800 | Msa1229520:CDS | 40.0% | |
| ! | GGGTCTGCATTTTTGCAAAT+TGG | - | chr8_2:5240930-5240949 | Msa1229520:CDS | 40.0% |
| TGGTAGAGTTTCATCATAGG+GGG | - | chr8_2:5241188-5241207 | Msa1229520:intron | 40.0% | |
| TTGACCACACCTAGTAAGAA+AGG | - | chr8_2:5241394-5241413 | Msa1229520:intron | 40.0% | |
| TGACCACACCTAGTAAGAAA+GGG | - | chr8_2:5241395-5241414 | Msa1229520:intron | 40.0% | |
| AAACCCTTTCTTACTAGGTG+TGG | + | chr8_2:5241401-5241420 | None:intergenic | 40.0% | |
| TTTCATGGCACACTATTTGG+AGG | - | chr8_2:5241772-5241791 | Msa1229520:intron | 40.0% | |
| AGATTTGTACGATTGCTGCA+TGG | + | chr8_2:5241802-5241821 | None:intergenic | 40.0% | |
| GAAAAAAATAACCACAGGGC+AGG | + | chr8_2:5241995-5242014 | None:intergenic | 40.0% | |
| GTTATAATCCCAGCTACAAC+AGG | - | chr8_2:5242094-5242113 | Msa1229520:intron | 40.0% | |
| CAATTGTTGCAACATGTCCT+GGG | + | chr8_2:5242135-5242154 | None:intergenic | 40.0% | |
| ACAATTGCAGAGTTGAAACC+TGG | - | chr8_2:5242148-5242167 | Msa1229520:intron | 40.0% | |
| CAATTGCAGAGTTGAAACCT+GGG | - | chr8_2:5242149-5242168 | Msa1229520:intron | 40.0% | |
| AATTGCAGAGTTGAAACCTG+GGG | - | chr8_2:5242150-5242169 | Msa1229520:intron | 40.0% | |
| GGGTCATGATTGTTCAAGAA+GGG | - | chr8_2:5242170-5242189 | Msa1229520:intron | 40.0% | |
| TATCAGCAACAGAGTTTGCA+TGG | + | chr8_2:5242240-5242259 | None:intergenic | 40.0% | |
| TGCTGATATAATCGCTGTTG+AGG | - | chr8_2:5242252-5242271 | Msa1229520:intron | 40.0% | |
| CTTGCATCAATTTGATCCAG+TGG | + | chr8_2:5242283-5242302 | None:intergenic | 40.0% | |
| ! | TTGAGTTGTTTATTTCCCCC+CGG | - | chr8_2:5242453-5242472 | Msa1229520:CDS | 40.0% |
| ACACTGAGACAAAATAACCG+GGG | + | chr8_2:5242473-5242492 | None:intergenic | 40.0% | |
| AACGAAGGAGGAATCAGTGA+CGG | + | chr8_2:5240633-5240652 | None:intergenic | 45.0% | |
| ATTCCTCCTTCGTTGAAGCT+TGG | - | chr8_2:5240639-5240658 | Msa1229520:three_prime_UTR | 45.0% | |
| ATTCCAAGCTTCAACGAAGG+AGG | + | chr8_2:5240645-5240664 | None:intergenic | 45.0% | |
| CGAGATTTGATGAAAGCGAG+GGG | + | chr8_2:5240701-5240720 | None:intergenic | 45.0% | |
| GACGAGATTTGATGAAAGCG+AGG | + | chr8_2:5240703-5240722 | None:intergenic | 45.0% | |
| GGAAGAGTAGAAGGAATAGG+AGG | + | chr8_2:5240725-5240744 | None:intergenic | 45.0% | |
| GTGGGAAGAGTAGAAGGAAT+AGG | + | chr8_2:5240728-5240747 | None:intergenic | 45.0% | |
| ! | AGTTTGGTGGGAAGAGTAGA+AGG | + | chr8_2:5240734-5240753 | None:intergenic | 45.0% |
| ! | GCGGACAATTGAGAAGCATA+AGG | + | chr8_2:5240776-5240795 | None:intergenic | 45.0% |
| GTTTCATCATAGGGGGTTTG+TGG | - | chr8_2:5241195-5241214 | Msa1229520:intron | 45.0% | |
| !! | AAGACCCACAAGTATCGACA+AGG | - | chr8_2:5241220-5241239 | Msa1229520:intron | 45.0% |
| CTCTCCTTGTCGATACTTGT+GGG | + | chr8_2:5241227-5241246 | None:intergenic | 45.0% | |
| ACTCTCCTTGTCGATACTTG+TGG | + | chr8_2:5241228-5241247 | None:intergenic | 45.0% | |
| CTCTCTGAGCCACTAACTAT+TGG | + | chr8_2:5241270-5241289 | None:intergenic | 45.0% | |
| TGGATATAAGCAGTCTCAGC+AGG | - | chr8_2:5241326-5241345 | Msa1229520:intron | 45.0% | |
| CTAGGTGTGGTCAACTACAT+GGG | + | chr8_2:5241388-5241407 | None:intergenic | 45.0% | |
| ACTAGGTGTGGTCAACTACA+TGG | + | chr8_2:5241389-5241408 | None:intergenic | 45.0% | |
| TGTGGTTCATGGATTCCACA+AGG | + | chr8_2:5241845-5241864 | None:intergenic | 45.0% | |
| GCAATTGTTGCAACATGTCC+TGG | + | chr8_2:5242136-5242155 | None:intergenic | 45.0% | |
| TCTTGAACAATCATGACCCC+AGG | + | chr8_2:5242169-5242188 | None:intergenic | 45.0% | |
| GGGGTCATGATTGTTCAAGA+AGG | - | chr8_2:5242169-5242188 | Msa1229520:intron | 45.0% | |
| CAGTTCAGCGACAACTGATT+TGG | - | chr8_2:5242342-5242361 | Msa1229520:CDS | 45.0% | |
| GAGAAAGCTGAAGCTCAGAT+TGG | - | chr8_2:5242364-5242383 | Msa1229520:CDS | 45.0% | |
| ACTGAGACAAAATAACCGGG+GGG | + | chr8_2:5242471-5242490 | None:intergenic | 45.0% | |
| CACTGAGACAAAATAACCGG+GGG | + | chr8_2:5242472-5242491 | None:intergenic | 45.0% | |
| ! | AACAACTTCCATCTAGCTCC+AGG | - | chr8_2:5242564-5242583 | Msa1229520:five_prime_UTR | 45.0% |
| CAATGTCTTGCTCAACTTCC+TGG | + | chr8_2:5242585-5242604 | None:intergenic | 45.0% | |
| AACGAAGGAGGAATCAGTGA+CGG | + | chr8_2:5240633-5240652 | None:intergenic | 45.0% | |
| ATTCCTCCTTCGTTGAAGCT+TGG | - | chr8_2:5240639-5240658 | Msa1229520:three_prime_UTR | 45.0% | |
| ATTCCAAGCTTCAACGAAGG+AGG | + | chr8_2:5240645-5240664 | None:intergenic | 45.0% | |
| CGAGATTTGATGAAAGCGAG+GGG | + | chr8_2:5240701-5240720 | None:intergenic | 45.0% | |
| GACGAGATTTGATGAAAGCG+AGG | + | chr8_2:5240703-5240722 | None:intergenic | 45.0% | |
| GGAAGAGTAGAAGGAATAGG+AGG | + | chr8_2:5240725-5240744 | None:intergenic | 45.0% | |
| GTGGGAAGAGTAGAAGGAAT+AGG | + | chr8_2:5240728-5240747 | None:intergenic | 45.0% | |
| ! | AGTTTGGTGGGAAGAGTAGA+AGG | + | chr8_2:5240734-5240753 | None:intergenic | 45.0% |
| ! | GCGGACAATTGAGAAGCATA+AGG | + | chr8_2:5240776-5240795 | None:intergenic | 45.0% |
| GTTTCATCATAGGGGGTTTG+TGG | - | chr8_2:5241195-5241214 | Msa1229520:intron | 45.0% | |
| !! | AAGACCCACAAGTATCGACA+AGG | - | chr8_2:5241220-5241239 | Msa1229520:intron | 45.0% |
| CTCTCCTTGTCGATACTTGT+GGG | + | chr8_2:5241227-5241246 | None:intergenic | 45.0% | |
| ACTCTCCTTGTCGATACTTG+TGG | + | chr8_2:5241228-5241247 | None:intergenic | 45.0% | |
| CTCTCTGAGCCACTAACTAT+TGG | + | chr8_2:5241270-5241289 | None:intergenic | 45.0% | |
| TGGATATAAGCAGTCTCAGC+AGG | - | chr8_2:5241326-5241345 | Msa1229520:intron | 45.0% | |
| CTAGGTGTGGTCAACTACAT+GGG | + | chr8_2:5241388-5241407 | None:intergenic | 45.0% | |
| ACTAGGTGTGGTCAACTACA+TGG | + | chr8_2:5241389-5241408 | None:intergenic | 45.0% | |
| TGTGGTTCATGGATTCCACA+AGG | + | chr8_2:5241845-5241864 | None:intergenic | 45.0% | |
| GCAATTGTTGCAACATGTCC+TGG | + | chr8_2:5242136-5242155 | None:intergenic | 45.0% | |
| TCTTGAACAATCATGACCCC+AGG | + | chr8_2:5242169-5242188 | None:intergenic | 45.0% | |
| GGGGTCATGATTGTTCAAGA+AGG | - | chr8_2:5242169-5242188 | Msa1229520:intron | 45.0% | |
| CAGTTCAGCGACAACTGATT+TGG | - | chr8_2:5242342-5242361 | Msa1229520:CDS | 45.0% | |
| GAGAAAGCTGAAGCTCAGAT+TGG | - | chr8_2:5242364-5242383 | Msa1229520:CDS | 45.0% | |
| ACTGAGACAAAATAACCGGG+GGG | + | chr8_2:5242471-5242490 | None:intergenic | 45.0% | |
| CACTGAGACAAAATAACCGG+GGG | + | chr8_2:5242472-5242491 | None:intergenic | 45.0% | |
| ! | AACAACTTCCATCTAGCTCC+AGG | - | chr8_2:5242564-5242583 | Msa1229520:five_prime_UTR | 45.0% |
| CAATGTCTTGCTCAACTTCC+TGG | + | chr8_2:5242585-5242604 | None:intergenic | 45.0% | |
| GTTGTAGGGTTAGATCGCTC+GGG | + | chr8_2:5240530-5240549 | None:intergenic | 50.0% | |
| GGTTGTAGGGTTAGATCGCT+CGG | + | chr8_2:5240531-5240550 | None:intergenic | 50.0% | |
| AGAGAAGGGAAGATGTAGCG+CGG | + | chr8_2:5240565-5240584 | None:intergenic | 50.0% | |
| TAGCTACATCGGTGGAGAAG+CGG | + | chr8_2:5240607-5240626 | None:intergenic | 50.0% | |
| ACGAAGGAGGAATCAGTGAC+GGG | + | chr8_2:5240632-5240651 | None:intergenic | 50.0% | |
| !! | ATGAAAGCGAGGGGTGTCTT+AGG | + | chr8_2:5240692-5240711 | None:intergenic | 50.0% |
| GTCTCAGCAGGCATGATTCA+TGG | - | chr8_2:5241338-5241357 | Msa1229520:intron | 50.0% | |
| CAGCAGGCATGATTCATGGT+AGG | - | chr8_2:5241342-5241361 | Msa1229520:intron | 50.0% | |
| ! | TGATGCAAGCCTTGTGCAGA+AGG | - | chr8_2:5242294-5242313 | Msa1229520:CDS | 50.0% |
| ! | GATGCAAGCCTTGTGCAGAA+GGG | - | chr8_2:5242295-5242314 | Msa1229520:CDS | 50.0% |
| CTTGAAGACCCTTCTGCACA+AGG | + | chr8_2:5242306-5242325 | None:intergenic | 50.0% | |
| TGTCGCTGAACTGAGCTTCT+GGG | + | chr8_2:5242335-5242354 | None:intergenic | 50.0% | |
| TTGTCGCTGAACTGAGCTTC+TGG | + | chr8_2:5242336-5242355 | None:intergenic | 50.0% | |
| CTCAACTTCCTGGAGCTAGA+TGG | + | chr8_2:5242575-5242594 | None:intergenic | 50.0% | |
| GTTGTAGGGTTAGATCGCTC+GGG | + | chr8_2:5240530-5240549 | None:intergenic | 50.0% | |
| GGTTGTAGGGTTAGATCGCT+CGG | + | chr8_2:5240531-5240550 | None:intergenic | 50.0% | |
| AGAGAAGGGAAGATGTAGCG+CGG | + | chr8_2:5240565-5240584 | None:intergenic | 50.0% | |
| TAGCTACATCGGTGGAGAAG+CGG | + | chr8_2:5240607-5240626 | None:intergenic | 50.0% | |
| ACGAAGGAGGAATCAGTGAC+GGG | + | chr8_2:5240632-5240651 | None:intergenic | 50.0% | |
| !! | ATGAAAGCGAGGGGTGTCTT+AGG | + | chr8_2:5240692-5240711 | None:intergenic | 50.0% |
| GTCTCAGCAGGCATGATTCA+TGG | - | chr8_2:5241338-5241357 | Msa1229520:intron | 50.0% | |
| CAGCAGGCATGATTCATGGT+AGG | - | chr8_2:5241342-5241361 | Msa1229520:intron | 50.0% | |
| ! | TGATGCAAGCCTTGTGCAGA+AGG | - | chr8_2:5242294-5242313 | Msa1229520:CDS | 50.0% |
| ! | GATGCAAGCCTTGTGCAGAA+GGG | - | chr8_2:5242295-5242314 | Msa1229520:CDS | 50.0% |
| CTTGAAGACCCTTCTGCACA+AGG | + | chr8_2:5242306-5242325 | None:intergenic | 50.0% | |
| TGTCGCTGAACTGAGCTTCT+GGG | + | chr8_2:5242335-5242354 | None:intergenic | 50.0% | |
| TTGTCGCTGAACTGAGCTTC+TGG | + | chr8_2:5242336-5242355 | None:intergenic | 50.0% | |
| CTCAACTTCCTGGAGCTAGA+TGG | + | chr8_2:5242575-5242594 | None:intergenic | 50.0% | |
| GGCGGAACATGGTGGTTGTA+GGG | + | chr8_2:5240544-5240563 | None:intergenic | 55.0% | |
| ! | AGTGACGGGGGTAGCTACAT+CGG | + | chr8_2:5240618-5240637 | None:intergenic | 55.0% |
| GAAGGAGGAATCAGTGACGG+GGG | + | chr8_2:5240630-5240649 | None:intergenic | 55.0% | |
| CGAAGGAGGAATCAGTGACG+GGG | + | chr8_2:5240631-5240650 | None:intergenic | 55.0% | |
| !! | AAAGCGAGGGGTGTCTTAGG+TGG | + | chr8_2:5240689-5240708 | None:intergenic | 55.0% |
| CCATCTGGCCTGTTGTAGCT+GGG | + | chr8_2:5242105-5242124 | None:intergenic | 55.0% | |
| CCAGCTACAACAGGCCAGAT+GGG | - | chr8_2:5242103-5242122 | Msa1229520:intron | 55.0% | |
| GTCCTGGGAGAATACCCATC+TGG | + | chr8_2:5242120-5242139 | None:intergenic | 55.0% | |
| GGCGGAACATGGTGGTTGTA+GGG | + | chr8_2:5240544-5240563 | None:intergenic | 55.0% | |
| ! | AGTGACGGGGGTAGCTACAT+CGG | + | chr8_2:5240618-5240637 | None:intergenic | 55.0% |
| GAAGGAGGAATCAGTGACGG+GGG | + | chr8_2:5240630-5240649 | None:intergenic | 55.0% | |
| CGAAGGAGGAATCAGTGACG+GGG | + | chr8_2:5240631-5240650 | None:intergenic | 55.0% | |
| !! | AAAGCGAGGGGTGTCTTAGG+TGG | + | chr8_2:5240689-5240708 | None:intergenic | 55.0% |
| CCATCTGGCCTGTTGTAGCT+GGG | + | chr8_2:5242105-5242124 | None:intergenic | 55.0% | |
| CCAGCTACAACAGGCCAGAT+GGG | - | chr8_2:5242103-5242122 | Msa1229520:intron | 55.0% | |
| GTCCTGGGAGAATACCCATC+TGG | + | chr8_2:5242120-5242139 | None:intergenic | 55.0% | |
| CGGCGGAACATGGTGGTTGT+AGG | + | chr8_2:5240545-5240564 | None:intergenic | 60.0% | |
| AGATGTAGCGCGGCGGAACA+TGG | + | chr8_2:5240555-5240574 | None:intergenic | 60.0% | |
| GAAGGGAAGATGTAGCGCGG+CGG | + | chr8_2:5240562-5240581 | None:intergenic | 60.0% | |
| CCCAGCTACAACAGGCCAGA+TGG | - | chr8_2:5242102-5242121 | Msa1229520:intron | 60.0% | |
| CCCATCTGGCCTGTTGTAGC+TGG | + | chr8_2:5242106-5242125 | None:intergenic | 60.0% | |
| GGCCAGATGGGTATTCTCCC+AGG | - | chr8_2:5242115-5242134 | Msa1229520:intron | 60.0% | |
| CGCTGTTGAGGCTGTTCCAC+TGG | - | chr8_2:5242264-5242283 | Msa1229520:intron | 60.0% | |
| CGGCGGAACATGGTGGTTGT+AGG | + | chr8_2:5240545-5240564 | None:intergenic | 60.0% | |
| AGATGTAGCGCGGCGGAACA+TGG | + | chr8_2:5240555-5240574 | None:intergenic | 60.0% | |
| GAAGGGAAGATGTAGCGCGG+CGG | + | chr8_2:5240562-5240581 | None:intergenic | 60.0% | |
| CCCAGCTACAACAGGCCAGA+TGG | - | chr8_2:5242102-5242121 | Msa1229520:intron | 60.0% | |
| CCCATCTGGCCTGTTGTAGC+TGG | + | chr8_2:5242106-5242125 | None:intergenic | 60.0% | |
| GGCCAGATGGGTATTCTCCC+AGG | - | chr8_2:5242115-5242134 | Msa1229520:intron | 60.0% | |
| CGCTGTTGAGGCTGTTCCAC+TGG | - | chr8_2:5242264-5242283 | Msa1229520:intron | 60.0% | |
| GATCGCTCGGGCTCGCAAGT+CGG | + | chr8_2:5240518-5240537 | None:intergenic | 65.0% | |
| TGTAGCGCGGCGGAACATGG+TGG | + | chr8_2:5240552-5240571 | None:intergenic | 65.0% | |
| ATCGGTGGAGAAGCGGCGAG+TGG | + | chr8_2:5240600-5240619 | None:intergenic | 65.0% | |
| GACGGGGGTAGCTACATCGG+TGG | + | chr8_2:5240615-5240634 | None:intergenic | 65.0% | |
| GCTGCTATCTCCCTGCCCTG+TGG | - | chr8_2:5241981-5242000 | Msa1229520:intron | 65.0% | |
| GATCGCTCGGGCTCGCAAGT+CGG | + | chr8_2:5240518-5240537 | None:intergenic | 65.0% | |
| TGTAGCGCGGCGGAACATGG+TGG | + | chr8_2:5240552-5240571 | None:intergenic | 65.0% | |
| ATCGGTGGAGAAGCGGCGAG+TGG | + | chr8_2:5240600-5240619 | None:intergenic | 65.0% | |
| GACGGGGGTAGCTACATCGG+TGG | + | chr8_2:5240615-5240634 | None:intergenic | 65.0% | |
| GCTGCTATCTCCCTGCCCTG+TGG | - | chr8_2:5241981-5242000 | Msa1229520:intron | 65.0% | |
| GGCGACGGCGCGTGAGAGAA+GGG | + | chr8_2:5240579-5240598 | None:intergenic | 70.0% | |
| TGGCGACGGCGCGTGAGAGA+AGG | + | chr8_2:5240580-5240599 | None:intergenic | 70.0% | |
| GGAGAAGCGGCGAGTGGCGA+CGG | + | chr8_2:5240594-5240613 | None:intergenic | 70.0% | |
| GGCGACGGCGCGTGAGAGAA+GGG | + | chr8_2:5240579-5240598 | None:intergenic | 70.0% | |
| TGGCGACGGCGCGTGAGAGA+AGG | + | chr8_2:5240580-5240599 | None:intergenic | 70.0% | |
| GGAGAAGCGGCGAGTGGCGA+CGG | + | chr8_2:5240594-5240613 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 5240417 | 5242672 | 5240417 | ID=Msa1229520;Name=Msa1229520 |
| chr8_2 | mRNA | 5240417 | 5242672 | 5240417 | ID=Msa1229520-mRNA-1;Parent=Msa1229520;Name=Msa1229520-mRNA-1;_AED=0.00;_eAED=0.00;_QI=137|1|1|1|1|1|2|243|197 |
| chr8_2 | exon | 5240417 | 5241004 | 5240417 | ID=Msa1229520-mRNA-1:exon:1797;Parent=Msa1229520-mRNA-1 |
| chr8_2 | exon | 5242287 | 5242672 | 5242287 | ID=Msa1229520-mRNA-1:exon:1796;Parent=Msa1229520-mRNA-1 |
| chr8_2 | five_prime_UTR | 5242536 | 5242672 | 5242536 | ID=Msa1229520-mRNA-1:five_prime_utr;Parent=Msa1229520-mRNA-1 |
| chr8_2 | CDS | 5242287 | 5242535 | 5242287 | ID=Msa1229520-mRNA-1:cds;Parent=Msa1229520-mRNA-1 |
| chr8_2 | CDS | 5240660 | 5241004 | 5240660 | ID=Msa1229520-mRNA-1:cds;Parent=Msa1229520-mRNA-1 |
| chr8_2 | three_prime_UTR | 5240417 | 5240659 | 5240417 | ID=Msa1229520-mRNA-1:three_prime_utr;Parent=Msa1229520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
