AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1202770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1202770 MtrunA17_Chr8g0373081 97.778 180 4 0 1 180 1 180 3.65e-126 352
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1202770 AT3G51010.1 54.450 191 70 4 3 180 1 187 1.13e-61 189

Find 84 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCCCTTGATTAGGCTTAT+TGG 0.196474 8_1:+56426594 None:intergenic
TCTATGGCTTAAATTTATTT+AGG 0.203158 8_1:-56425061 Msa1202770:exon
GGTGGGTGGCGGTGGGCCGC+TGG 0.220759 8_1:+56427988 None:intergenic
GTTGCGTGCTTTCGTGTTAA+TGG 0.250809 8_1:+56427930 None:intergenic
CTCCCTTGATTAGGCTTATT+GGG 0.266061 8_1:+56426595 None:intergenic
AGACGGTTCAAATTATTAAT+TGG 0.281969 8_1:+56424999 None:intergenic
TGGTTGGTGGTGGGTGGCGG+TGG 0.302438 8_1:+56427980 None:intergenic
CTCTTGATGCTCCCTTGATT+AGG 0.327155 8_1:+56426586 None:intergenic
GTCGTCCAGGGCCTTATGCT+TGG 0.331141 8_1:-56426648 Msa1202770:intron
ATTAGGCTTATTGGGAAGTA+TGG 0.347303 8_1:+56426603 None:intergenic
TTGCGTGCTTTCGTGTTAAT+GGG 0.371163 8_1:+56427931 None:intergenic
TCTTCTTTGCAACCATCTTC+CGG 0.379881 8_1:-56426868 Msa1202770:CDS
GTGGGTGGCGGTGGGCCGCT+GGG 0.381686 8_1:+56427989 None:intergenic
CATATGATGTTAATATAAAC+AGG 0.386772 8_1:+56424833 None:intergenic
GGTTGGTTGGTGGTGGGTGG+CGG 0.389072 8_1:+56427977 None:intergenic
TCGTCCAGGGCCTTATGCTT+GGG 0.393020 8_1:-56426647 Msa1202770:intron
GAGCGACGGTTGGTTGGTGG+TGG 0.396754 8_1:+56427970 None:intergenic
CAAGCTAGCCCGCTTTCGAC+GGG 0.400130 8_1:+56426753 None:intergenic
TAAGAAGGTAGAGCGTAAAA+TGG 0.403135 8_1:-56425158 Msa1202770:CDS
ATGCAAGCTCACCGTGCATA+TGG 0.410402 8_1:+56424795 None:intergenic
GGTGGTTTGCTGCCGGAAGA+TGG 0.417214 8_1:+56426856 None:intergenic
GCTAATATATACCAGTATAA+AGG 0.421466 8_1:+56426528 None:intergenic
GTTTATATTAACATCATATG+TGG 0.425964 8_1:-56424830 Msa1202770:three_prime_UTR
GCTGTGAAAGTGGCTCAAAA+AGG 0.426398 8_1:+56426819 None:intergenic
TCAAGCTAGCCCGCTTTCGA+CGG 0.435563 8_1:+56426752 None:intergenic
TTGTTCTACTTTACTCTGGA+CGG 0.447098 8_1:-56424864 Msa1202770:three_prime_UTR
TTATCAGAAGGTCGTCTCTT+GGG 0.451983 8_1:+56426778 None:intergenic
AAGAGAGTGGGCAGAAAGAC+TGG 0.452985 8_1:-56425119 Msa1202770:CDS
GCTTGGGTTGAACACACAAC+TGG 0.459757 8_1:-56426631 Msa1202770:CDS
CTTCCCAATAAGCCTAATCA+AGG 0.465217 8_1:-56426598 Msa1202770:CDS
AAAACTGACCTGAAAACTGA+TGG 0.466997 8_1:+56427907 None:intergenic
TGATAAACCCCGTCGAAAGC+GGG 0.471130 8_1:-56426761 Msa1202770:CDS
GGTTGGTGGTGGGTGGCGGT+GGG 0.471297 8_1:+56427981 None:intergenic
GTGTGTTCAACCCAAGCATA+AGG 0.483354 8_1:+56426637 None:intergenic
TGTTCTACTTTACTCTGGAC+GGG 0.484769 8_1:-56424863 Msa1202770:three_prime_UTR
GCAGCGCCGTGCCTTTATAC+TGG 0.484793 8_1:-56426539 Msa1202770:intron
TTTATCAGAAGGTCGTCTCT+TGG 0.486620 8_1:+56426777 None:intergenic
GGAGAGCGACGGTTGGTTGG+TGG 0.499459 8_1:+56427967 None:intergenic
GGCATTAACAATTGCAAATG+AGG 0.499920 8_1:+56425037 None:intergenic
AGCGACGGTTGGTTGGTGGT+GGG 0.500113 8_1:+56427971 None:intergenic
TCATTTGCAATTGTTAATGC+CGG 0.509743 8_1:-56425035 Msa1202770:three_prime_UTR
TTTCGACGGGGTTTATCAGA+AGG 0.512993 8_1:+56426766 None:intergenic
AGATTCGGAAGAGGAGTCCT+CGG 0.513910 8_1:-56426973 Msa1202770:CDS
GCGGAAGAAGAACGTTAAGA+AGG 0.519807 8_1:-56425173 Msa1202770:CDS
GAATTGGGGTGGTTTGCTGC+CGG 0.523920 8_1:+56426849 None:intergenic
TGATCTCACTCTCGTCGTCA+AGG 0.527754 8_1:-56426933 Msa1202770:CDS
CTCACTCTCGTCGTCAAGGA+CGG 0.532447 8_1:-56426929 Msa1202770:CDS
TGTAGGCGGAAAAGAAGAAA+AGG 0.538675 8_1:-56425219 Msa1202770:intron
TTTATATTAACATCATATGT+GGG 0.541890 8_1:-56424829 Msa1202770:three_prime_UTR
AGAGGAGAGCGACGGTTGGT+TGG 0.548202 8_1:+56427964 None:intergenic
GACGGTTGGTTGGTGGTGGG+TGG 0.557346 8_1:+56427974 None:intergenic
TGTTGCTGTGAGAAAGAAGA+AGG 0.560710 8_1:+56428016 None:intergenic
TGTCTGTCAAGCTGTGAAAG+TGG 0.568033 8_1:+56426809 None:intergenic
GTAAAATGGCTGCAGTTGCA+AGG 0.569157 8_1:-56425144 Msa1202770:CDS
GAGGAGAGGAGAGCGACGGT+TGG 0.573324 8_1:+56427960 None:intergenic
CTGATAAACCCCGTCGAAAG+CGG 0.575794 8_1:-56426762 Msa1202770:CDS
TAAAATGGCTGCAGTTGCAA+GGG 0.587269 8_1:-56425143 Msa1202770:CDS
GGTTGCAAAGAAGAATGAAA+CGG 0.590402 8_1:+56426877 None:intergenic
GATTCGGAAGAGGAGTCCTC+GGG 0.593998 8_1:-56426972 Msa1202770:CDS
GGTTGAATTGCAGCGCCTTG+AGG 0.594805 8_1:-56425098 Msa1202770:CDS
AGTTGCAAGGGAAAGAGAGT+GGG 0.599831 8_1:-56425131 Msa1202770:CDS
AAACTGACCTGAAAACTGAT+GGG 0.600952 8_1:+56427908 None:intergenic
TCGTGTTAATGGGCTGAGAG+AGG 0.602161 8_1:+56427941 None:intergenic
GAAGATATAGTATGTGTAGA+CGG 0.603025 8_1:+56424982 None:intergenic
CTCAGATGCAAGAGGCTAAG+CGG 0.604543 8_1:-56425192 Msa1202770:CDS
CAGTTGCAAGGGAAAGAGAG+TGG 0.605780 8_1:-56425132 Msa1202770:CDS
ACGACGAGAGTGAGATCAGA+GGG 0.612151 8_1:+56426938 None:intergenic
TTTAGATCTGTCCATATGCA+CGG 0.618218 8_1:-56424806 Msa1202770:three_prime_UTR
TCTTCTTTCTCACAGCAACA+CGG 0.624449 8_1:-56428013 Msa1202770:five_prime_UTR
GAGAGAGGAGAGGAGAGCGA+CGG 0.630646 8_1:+56427956 None:intergenic
TTCCCAATAAGCCTAATCAA+GGG 0.632102 8_1:-56426597 Msa1202770:CDS
CTAATCAAGGGAGCATCAAG+AGG 0.644871 8_1:-56426585 Msa1202770:CDS
TATATACCAGTATAAAGGCA+CGG 0.647751 8_1:+56426533 None:intergenic
AAGGAAAGCTCAGATGCAAG+AGG 0.649661 8_1:-56425200 Msa1202770:CDS
AAGCTAGCCCGCTTTCGACG+GGG 0.650879 8_1:+56426754 None:intergenic
AGAATGAAACGGCAATGTGG+AGG 0.653637 8_1:+56426888 None:intergenic
AAGGGAAGAAGGAATTGGGG+TGG 0.654054 8_1:+56426838 None:intergenic
ATCAAGGGAGCATCAAGAGG+AGG 0.654645 8_1:-56426582 Msa1202770:CDS
GGAATGAGAAGAAACGCATG+AGG 0.662356 8_1:-56426561 Msa1202770:CDS
AGAAGAATGAAACGGCAATG+TGG 0.685252 8_1:+56426885 None:intergenic
GACGACGAGAGTGAGATCAG+AGG 0.687668 8_1:+56426937 None:intergenic
TTAATGGGCTGAGAGAGGAG+AGG 0.693145 8_1:+56427946 None:intergenic
TCACAGCAACACGGACCCAG+CGG 0.694597 8_1:-56428004 Msa1202770:five_prime_UTR
GAGGGCGTAAAACATTCCCG+AGG 0.745952 8_1:+56426956 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATAAAATGAAATTAAG+TGG + chr8_1:56426343-56426362 None:intergenic 10.0%
!!! TTAATTTCATTTTATATATC+AGG - chr8_1:56426344-56426363 Msa1202770:intron 10.0%
!!! TTCATTTTTTTAAAAAGAAT+AGG + chr8_1:56427461-56427480 None:intergenic 10.0%
!! TATCAATATAAAATCAACAA+AGG + chr8_1:56425134-56425153 None:intergenic 15.0%
!! AATGTAATTAATTGTTTGTT+AGG - chr8_1:56425526-56425545 Msa1202770:intron 15.0%
!! TAAATTATACATAGAAGTTT+AGG - chr8_1:56426671-56426690 Msa1202770:intron 15.0%
!! TATTTAACATAAACTAATCT+TGG - chr8_1:56426813-56426832 Msa1202770:CDS 15.0%
!! AATGAACATACAATTATATT+AGG + chr8_1:56427592-56427611 None:intergenic 15.0%
!! TAATATAATTGTATGTTCAT+TGG - chr8_1:56427591-56427610 Msa1202770:intron 15.0%
!! AATATAATTGTATGTTCATT+GGG - chr8_1:56427592-56427611 Msa1202770:intron 15.0%
!! TTTATATTAACATCATATGT+GGG - chr8_1:56428017-56428036 Msa1202770:five_prime_UTR 15.0%
!! TTATGAAGAATAATTGAATC+AGG - chr8_1:56425097-56425116 Msa1202770:CDS 20.0%
!! CTCTCACAAAAAAAAAAAAA+AGG + chr8_1:56425339-56425358 None:intergenic 20.0%
!!! TGAGTTGATTATAAAAAACA+AGG + chr8_1:56425765-56425784 None:intergenic 20.0%
!! TCAGAGAAAAATTTGTATAT+TGG - chr8_1:56425821-56425840 Msa1202770:intron 20.0%
!! TATGAGTTTCATTTAAATCT+TGG + chr8_1:56427082-56427101 None:intergenic 20.0%
!!! TTTCTATTTTGTGGTTATTA+TGG + chr8_1:56427164-56427183 None:intergenic 20.0%
!!! ACTTTCTTATTTCTATTTTG+TGG + chr8_1:56427173-56427192 None:intergenic 20.0%
!! AAAAAATGAAAGTTTCTCTA+TGG - chr8_1:56427471-56427490 Msa1202770:intron 20.0%
!!! AATTCTTCTATAAGGAATTT+TGG + chr8_1:56427504-56427523 None:intergenic 20.0%
!! AAAGTTCAAATTCTTCTATA+AGG + chr8_1:56427512-56427531 None:intergenic 20.0%
!! TTATAGAAGAATTTGAACTT+TGG - chr8_1:56427511-56427530 Msa1202770:intron 20.0%
!! TCTATGGCTTAAATTTATTT+AGG - chr8_1:56427785-56427804 Msa1202770:intron 20.0%
!! CATATGATGTTAATATAAAC+AGG + chr8_1:56428016-56428035 None:intergenic 20.0%
!! GTTTATATTAACATCATATG+TGG - chr8_1:56428016-56428035 Msa1202770:five_prime_UTR 20.0%
!!! TGAAATTGATTTTAGCCTTT+AGG - chr8_1:56425053-56425072 Msa1202770:exon 25.0%
!! AAAATAAGGCATTTATGAGT+TGG - chr8_1:56425432-56425451 Msa1202770:intron 25.0%
! GCTGAAAAACTAAATGTAAT+TGG - chr8_1:56425677-56425696 Msa1202770:intron 25.0%
! AGCTGAAAAAACTATTGAAT+CGG - chr8_1:56425714-56425733 Msa1202770:intron 25.0%
!!! TCATACATTTTTAGTTCGTT+AGG - chr8_1:56425782-56425801 Msa1202770:intron 25.0%
! GCTAATATATACCAGTATAA+AGG + chr8_1:56426321-56426340 None:intergenic 25.0%
! CTTTGTGAATATTGTTTACT+AGG - chr8_1:56426447-56426466 Msa1202770:intron 25.0%
! TTCATGGAGTATAAACTATA+AGG - chr8_1:56426483-56426502 Msa1202770:intron 25.0%
! TCACAAAAGTTGTCAAAAAA+TGG - chr8_1:56426764-56426783 Msa1202770:CDS 25.0%
! TTGACCTATATGTATGTTTA+AGG - chr8_1:56427207-56427226 Msa1202770:intron 25.0%
! GATACCTTAAACATACATAT+AGG + chr8_1:56427214-56427233 None:intergenic 25.0%
!! TGTTATTCTAGCTATGTATT+AGG - chr8_1:56427392-56427411 Msa1202770:intron 25.0%
!! GTTATTCTAGCTATGTATTA+GGG - chr8_1:56427393-56427412 Msa1202770:intron 25.0%
!! AATAGGACATGTATTTTGTT+AGG + chr8_1:56427444-56427463 None:intergenic 25.0%
! AGACGGTTCAAATTATTAAT+TGG + chr8_1:56427850-56427869 None:intergenic 25.0%
!! TTTTATGTTGTCTGATGATT+GGG - chr8_1:56427893-56427912 Msa1202770:intron 25.0%
! GTAGAACAAAAACAAAAGTA+AGG + chr8_1:56427971-56427990 None:intergenic 25.0%
GTAGTGAAAGTAATTGAATC+AGG - chr8_1:56424989-56425008 Msa1202770:three_prime_UTR 30.0%
TTTCAGTAACGAAAACCTAA+AGG + chr8_1:56425071-56425090 None:intergenic 30.0%
!! ATATTGATAGTGTAGTAACC+CGG - chr8_1:56425145-56425164 Msa1202770:CDS 30.0%
TCCAGAATATATGATCCATT+TGG - chr8_1:56425360-56425379 Msa1202770:intron 30.0%
CCAGAATATATGATCCATTT+GGG - chr8_1:56425361-56425380 Msa1202770:intron 30.0%
! AGGAAGTTGAGTAATTTTCA+CGG - chr8_1:56425397-56425416 Msa1202770:intron 30.0%
! TTATGAGTTGGATATTCCAA+CGG - chr8_1:56425444-56425463 Msa1202770:intron 30.0%
TGATTTGAGCTTAAGGTTAA+CGG + chr8_1:56425578-56425597 None:intergenic 30.0%
!! TCTCAATTGATTTGAGCTTA+AGG + chr8_1:56425585-56425604 None:intergenic 30.0%
TATAATTGATGCAGCAGAAT+CGG - chr8_1:56425641-56425660 Msa1202770:intron 30.0%
!! TTGTATATTGGTGATGTTGT+AGG - chr8_1:56425833-56425852 Msa1202770:intron 30.0%
TATATACCAGTATAAAGGCA+CGG + chr8_1:56426316-56426335 None:intergenic 30.0%
AGGAAACATATCATCTTTCA+TGG - chr8_1:56426467-56426486 Msa1202770:intron 30.0%
ATACATAGAAGTTTAGGTAG+TGG - chr8_1:56426677-56426696 Msa1202770:intron 30.0%
CAATAGAAAGAGAAAGTAGA+AGG - chr8_1:56426714-56426733 Msa1202770:intron 30.0%
ATAACAGCAAAGAAAACATG+AGG + chr8_1:56426880-56426899 None:intergenic 30.0%
ATACTTGTGAACGATAGATA+AGG - chr8_1:56426931-56426950 Msa1202770:CDS 30.0%
GGTTATTATGGCTATAAGTA+TGG + chr8_1:56427152-56427171 None:intergenic 30.0%
ATGTTTATCCAAAGACCATT+TGG + chr8_1:56427548-56427567 None:intergenic 30.0%
GATAAACATAACTGTGATCA+TGG - chr8_1:56427559-56427578 Msa1202770:intron 30.0%
TCATTTGCAATTGTTAATGC+CGG - chr8_1:56427811-56427830 Msa1202770:intron 30.0%
GAAGATATAGTATGTGTAGA+CGG + chr8_1:56427867-56427886 None:intergenic 30.0%
! GTTTTATGTTGTCTGATGAT+TGG - chr8_1:56427892-56427911 Msa1202770:intron 30.0%
GAACAAAAACAAAAGTAAGG+CGG + chr8_1:56427968-56427987 None:intergenic 30.0%
! GTTTTTGTTCTACTTTACTC+TGG - chr8_1:56427978-56427997 Msa1202770:five_prime_UTR 30.0%
AAACTGACCTGAAAACTGAT+GGG + chr8_1:56424941-56424960 None:intergenic 35.0%
AAAACTGACCTGAAAACTGA+TGG + chr8_1:56424942-56424961 None:intergenic 35.0%
!! TATTGATAGTGTAGTAACCC+GGG - chr8_1:56425146-56425165 Msa1202770:CDS 35.0%
ATACCAAGTGAACATGTCTA+GGG - chr8_1:56425217-56425236 Msa1202770:CDS 35.0%
!! AAGCATCGACTTCTCAAATT+TGG + chr8_1:56425269-56425288 None:intergenic 35.0%
CCCAAATGGATCATATATTC+TGG + chr8_1:56425364-56425383 None:intergenic 35.0%
TATATGATCCATTTGGGTGA+AGG - chr8_1:56425367-56425386 Msa1202770:intron 35.0%
TATATCATCCTTCACCCAAA+TGG + chr8_1:56425378-56425397 None:intergenic 35.0%
ATTTGGGTGAAGGATGATAT+AGG - chr8_1:56425377-56425396 Msa1202770:intron 35.0%
! AGTAATTTTCACGGCTTCAA+AGG - chr8_1:56425406-56425425 Msa1202770:intron 35.0%
! GTAATTTTCACGGCTTCAAA+GGG - chr8_1:56425407-56425426 Msa1202770:intron 35.0%
GGCTTCAAAGGGTAAAAATA+AGG - chr8_1:56425418-56425437 Msa1202770:intron 35.0%
TTCATCATGATACTAACCGT+TGG + chr8_1:56425463-56425482 None:intergenic 35.0%
GATGAATTAGTTGAGAGACT+TGG - chr8_1:56425477-56425496 Msa1202770:intron 35.0%
TGGTCAAGTTCTATGTAAAG+TGG - chr8_1:56425497-56425516 Msa1202770:intron 35.0%
! AATATTTTTCTCCTTCGTCC+AGG - chr8_1:56425551-56425570 Msa1202770:intron 35.0%
TGAATCGGTGTAGATTACTA+TGG - chr8_1:56425729-56425748 Msa1202770:intron 35.0%
GTGTAGATTACTATGGTGAA+TGG - chr8_1:56425736-56425755 Msa1202770:intron 35.0%
TGCACGAGAAAAATGAGATT+CGG - chr8_1:56425858-56425877 Msa1202770:intron 35.0%
AGAAAAATGAGATTCGGAAG+AGG - chr8_1:56425864-56425883 Msa1202770:intron 35.0%
GGTTGCAAAGAAGAATGAAA+CGG + chr8_1:56425972-56425991 None:intergenic 35.0%
AAAAAGGGAAGAAGGAATTG+GGG + chr8_1:56426014-56426033 None:intergenic 35.0%
CAAAAAGGGAAGAAGGAATT+GGG + chr8_1:56426015-56426034 None:intergenic 35.0%
TCAAAAAGGGAAGAAGGAAT+TGG + chr8_1:56426016-56426035 None:intergenic 35.0%
ATTAGGCTTATTGGGAAGTA+TGG + chr8_1:56426246-56426265 None:intergenic 35.0%
TTCCCAATAAGCCTAATCAA+GGG - chr8_1:56426249-56426268 Msa1202770:intron 35.0%
GACTCACACATGTAAATCAA+AGG + chr8_1:56426399-56426418 None:intergenic 35.0%
AACTATAAGGTGCATGAGTT+TGG - chr8_1:56426496-56426515 Msa1202770:intron 35.0%
CAACAAGTTGTCACAAGAAA+GGG + chr8_1:56426645-56426664 None:intergenic 35.0%
!! AGAAGTACTAGTGTTTGTGA+TGG + chr8_1:56427020-56427039 None:intergenic 35.0%
AATCTTGGACCATCTGTATT+GGG + chr8_1:56427067-56427086 None:intergenic 35.0%
AAATCTTGGACCATCTGTAT+TGG + chr8_1:56427068-56427087 None:intergenic 35.0%
ATAAGAAAGTGACAACTGAG+AGG - chr8_1:56427183-56427202 Msa1202770:intron 35.0%
CATACTATCATACCAGTATG+TGG - chr8_1:56427233-56427252 Msa1202770:intron 35.0%
AAGTGTCAACTAAAGCTAGA+AGG - chr8_1:56427294-56427313 Msa1202770:intron 35.0%
! ATTCTAGCTATGTATTAGGG+AGG - chr8_1:56427396-56427415 Msa1202770:intron 35.0%
TTGGTTGTATATCAGCCAAA+TGG - chr8_1:56427530-56427549 Msa1202770:intron 35.0%
TATATCAGCCAAATGGTCTT+TGG - chr8_1:56427537-56427556 Msa1202770:intron 35.0%
!!! TTGGGAACTTTTTTGCATGT+AGG - chr8_1:56427610-56427629 Msa1202770:intron 35.0%
TAAGAAGGTAGAGCGTAAAA+TGG - chr8_1:56427688-56427707 Msa1202770:intron 35.0%
!! ACTTTTTCTTCTCTTCCTCA+AGG + chr8_1:56427766-56427785 None:intergenic 35.0%
GGAAGAGAAGAAAAAGTCTA+TGG - chr8_1:56427769-56427788 Msa1202770:intron 35.0%
GGCATTAACAATTGCAAATG+AGG + chr8_1:56427812-56427831 None:intergenic 35.0%
! TTAATGCCGGTCAAGTTTTT+GGG - chr8_1:56427824-56427843 Msa1202770:intron 35.0%
TTGTTCTACTTTACTCTGGA+CGG - chr8_1:56427982-56428001 Msa1202770:five_prime_UTR 35.0%
TTTAGATCTGTCCATATGCA+CGG - chr8_1:56428040-56428059 Msa1202770:five_prime_UTR 35.0%
TGTTGCTGTGAGAAAGAAGA+AGG + chr8_1:56424833-56424852 None:intergenic 40.0%
TCTTCTTTCTCACAGCAACA+CGG - chr8_1:56424833-56424852 Msa1202770:three_prime_UTR 40.0%
TTGCGTGCTTTCGTGTTAAT+GGG + chr8_1:56424918-56424937 None:intergenic 40.0%
TCTTCGCATATTTCATAGCC+CGG + chr8_1:56425167-56425186 None:intergenic 40.0%
CTAGACATGTTCACTTGGTA+TGG + chr8_1:56425218-56425237 None:intergenic 40.0%
CATACCAAGTGAACATGTCT+AGG - chr8_1:56425216-56425235 Msa1202770:CDS 40.0%
TCTATCACTCCATTAGACAG+TGG + chr8_1:56425296-56425315 None:intergenic 40.0%
AGAAGAATGAAACGGCAATG+TGG + chr8_1:56425964-56425983 None:intergenic 40.0%
TCTTCTTTGCAACCATCTTC+CGG - chr8_1:56425978-56425997 Msa1202770:intron 40.0%
CTGTGAAAGTGGCTCAAAAA+GGG + chr8_1:56426029-56426048 None:intergenic 40.0%
TTATCAGAAGGTCGTCTCTT+GGG + chr8_1:56426071-56426090 None:intergenic 40.0%
TTTATCAGAAGGTCGTCTCT+TGG + chr8_1:56426072-56426091 None:intergenic 40.0%
TTATGATGAACTTGTCGTCC+AGG - chr8_1:56426185-56426204 Msa1202770:intron 40.0%
TATGATGAACTTGTCGTCCA+GGG - chr8_1:56426186-56426205 Msa1202770:intron 40.0%
CTTCCCAATAAGCCTAATCA+AGG - chr8_1:56426248-56426267 Msa1202770:intron 40.0%
CTCCCTTGATTAGGCTTATT+GGG + chr8_1:56426254-56426273 None:intergenic 40.0%
!! TTTGGAACAAAGGTGTTGTC+TGG - chr8_1:56426514-56426533 Msa1202770:intron 40.0%
CCAACAAGTTGTCACAAGAA+AGG + chr8_1:56426646-56426665 None:intergenic 40.0%
CCTTTCTTGTGACAACTTGT+TGG - chr8_1:56426643-56426662 Msa1202770:intron 40.0%
!! GTTATGAGAGAGCATCAAGA+TGG + chr8_1:56426839-56426858 None:intergenic 40.0%
!! CACAGTGAAAGCATCTTTAG+AGG - chr8_1:56426967-56426986 Msa1202770:CDS 40.0%
!! GGGTAATGGAGTTAGGTTTA+TGG + chr8_1:56427047-56427066 None:intergenic 40.0%
!! CTGTATTGGGTAATGGAGTT+AGG + chr8_1:56427054-56427073 None:intergenic 40.0%
ACTCCATTACCCAATACAGA+TGG - chr8_1:56427055-56427074 Msa1202770:intron 40.0%
ACAGCCAATTATTTGCCACA+GGG + chr8_1:56427273-56427292 None:intergenic 40.0%
!!! GGAACTTTTTTGCATGTAGG+CGG - chr8_1:56427613-56427632 Msa1202770:intron 40.0%
TGTAGGCGGAAAAGAAGAAA+AGG - chr8_1:56427627-56427646 Msa1202770:intron 40.0%
TAAAATGGCTGCAGTTGCAA+GGG - chr8_1:56427703-56427722 Msa1202770:intron 40.0%
! GTTAATGCCGGTCAAGTTTT+TGG - chr8_1:56427823-56427842 Msa1202770:intron 40.0%
AATTGGCCCAAAAACTTGAC+CGG + chr8_1:56427833-56427852 None:intergenic 40.0%
TGTTCTACTTTACTCTGGAC+GGG - chr8_1:56427983-56428002 Msa1202770:five_prime_UTR 40.0%
GTTGCGTGCTTTCGTGTTAA+TGG + chr8_1:56424919-56424938 None:intergenic 45.0%
CTTCGCATATTTCATAGCCC+GGG + chr8_1:56425166-56425185 None:intergenic 45.0%
TGCTTTCTGCCACTGTCTAA+TGG - chr8_1:56425284-56425303 Msa1202770:intron 45.0%
AGAATGAAACGGCAATGTGG+AGG + chr8_1:56425961-56425980 None:intergenic 45.0%
AGTGGCTCAAAAAGGGAAGA+AGG + chr8_1:56426022-56426041 None:intergenic 45.0%
GCTGTGAAAGTGGCTCAAAA+AGG + chr8_1:56426030-56426049 None:intergenic 45.0%
TGTCTGTCAAGCTGTGAAAG+TGG + chr8_1:56426040-56426059 None:intergenic 45.0%
TTTCGACGGGGTTTATCAGA+AGG + chr8_1:56426083-56426102 None:intergenic 45.0%
GTGTGTTCAACCCAAGCATA+AGG + chr8_1:56426212-56426231 None:intergenic 45.0%
GCTCCCTTGATTAGGCTTAT+TGG + chr8_1:56426255-56426274 None:intergenic 45.0%
CTCTTGATGCTCCCTTGATT+AGG + chr8_1:56426263-56426282 None:intergenic 45.0%
!! CTAATCAAGGGAGCATCAAG+AGG - chr8_1:56426261-56426280 Msa1202770:intron 45.0%
GGAATGAGAAGAAACGCATG+AGG - chr8_1:56426285-56426304 Msa1202770:intron 45.0%
! GGTGCATGAGTTTGGAACAA+AGG - chr8_1:56426504-56426523 Msa1202770:intron 45.0%
!! AACAAAGGTGTTGTCTGGAG+TGG - chr8_1:56426519-56426538 Msa1202770:intron 45.0%
GGACCATCTGTATTGGGTAA+TGG + chr8_1:56427061-56427080 None:intergenic 45.0%
CAGTAATACGGACCACATAC+TGG + chr8_1:56427248-56427267 None:intergenic 45.0%
AGCCAATTATTTGCCACAGG+GGG + chr8_1:56427271-56427290 None:intergenic 45.0%
CAGCCAATTATTTGCCACAG+GGG + chr8_1:56427272-56427291 None:intergenic 45.0%
GACAGCCAATTATTTGCCAC+AGG + chr8_1:56427274-56427293 None:intergenic 45.0%
TACAACTTCACAATGCGCTG+AGG - chr8_1:56427326-56427345 Msa1202770:intron 45.0%
GCGCTGAGGCTAAATTGATT+TGG - chr8_1:56427340-56427359 Msa1202770:intron 45.0%
AGCAGCAGCTGACAGATAAA+TGG + chr8_1:56427372-56427391 None:intergenic 45.0%
AAGGAAAGCTCAGATGCAAG+AGG - chr8_1:56427646-56427665 Msa1202770:intron 45.0%
GCGGAAGAAGAACGTTAAGA+AGG - chr8_1:56427673-56427692 Msa1202770:intron 45.0%
GTAAAATGGCTGCAGTTGCA+AGG - chr8_1:56427702-56427721 Msa1202770:intron 45.0%
AGTTGCAAGGGAAAGAGAGT+GGG - chr8_1:56427715-56427734 Msa1202770:intron 45.0%
!! TTAATGGGCTGAGAGAGGAG+AGG + chr8_1:56424903-56424922 None:intergenic 50.0%
!! TCGTGTTAATGGGCTGAGAG+AGG + chr8_1:56424908-56424927 None:intergenic 50.0%
! CACGCAACCCATCAGTTTTC+AGG - chr8_1:56424931-56424950 Msa1202770:three_prime_UTR 50.0%
CGTCCCTAGACATGTTCACT+TGG + chr8_1:56425223-56425242 None:intergenic 50.0%
! GAGCTTAAGGTTAACGGACC+TGG + chr8_1:56425572-56425591 None:intergenic 50.0%
AGATTCGGAAGAGGAGTCCT+CGG - chr8_1:56425873-56425892 Msa1202770:intron 50.0%
ACGACGAGAGTGAGATCAGA+GGG + chr8_1:56425911-56425930 None:intergenic 50.0%
TGATCTCACTCTCGTCGTCA+AGG - chr8_1:56425913-56425932 Msa1202770:intron 50.0%
AAGGGAAGAAGGAATTGGGG+TGG + chr8_1:56426011-56426030 None:intergenic 50.0%
CTGATAAACCCCGTCGAAAG+CGG - chr8_1:56426084-56426103 Msa1202770:intron 50.0%
TGATAAACCCCGTCGAAAGC+GGG - chr8_1:56426085-56426104 Msa1202770:intron 50.0%
!! GCTTGGGTTGAACACACAAC+TGG - chr8_1:56426215-56426234 Msa1202770:intron 50.0%
!! ATCAAGGGAGCATCAAGAGG+AGG - chr8_1:56426264-56426283 Msa1202770:intron 50.0%
TGCCCCCTGTGGCAAATAAT+TGG - chr8_1:56427266-56427285 Msa1202770:intron 50.0%
CTCAGATGCAAGAGGCTAAG+CGG - chr8_1:56427654-56427673 Msa1202770:intron 50.0%
CAGTTGCAAGGGAAAGAGAG+TGG - chr8_1:56427714-56427733 Msa1202770:intron 50.0%
AAGAGAGTGGGCAGAAAGAC+TGG - chr8_1:56427727-56427746 Msa1202770:intron 50.0%
ATGCAAGCTCACCGTGCATA+TGG + chr8_1:56428054-56428073 None:intergenic 50.0%
! AGGTTAACGGACCTGGACGA+AGG + chr8_1:56425565-56425584 None:intergenic 55.0%
GATTCGGAAGAGGAGTCCTC+GGG - chr8_1:56425874-56425893 Msa1202770:intron 55.0%
! GAGGGCGTAAAACATTCCCG+AGG + chr8_1:56425893-56425912 None:intergenic 55.0%
GACGACGAGAGTGAGATCAG+AGG + chr8_1:56425912-56425931 None:intergenic 55.0%
CTCACTCTCGTCGTCAAGGA+CGG - chr8_1:56425917-56425936 Msa1202770:intron 55.0%
!! GAATTGGGGTGGTTTGCTGC+CGG + chr8_1:56426000-56426019 None:intergenic 55.0%
TCAAGCTAGCCCGCTTTCGA+CGG + chr8_1:56426097-56426116 None:intergenic 55.0%
AAGCAACGCAACGCACCAGA+GGG + chr8_1:56426122-56426141 None:intergenic 55.0%
! TCGTCCAGGGCCTTATGCTT+GGG - chr8_1:56426199-56426218 Msa1202770:intron 55.0%
TCAACCCAAGCATAAGGCCC+TGG + chr8_1:56426206-56426225 None:intergenic 55.0%
TGCCACAGGGGGCAGTAATA+CGG + chr8_1:56427260-56427279 None:intergenic 55.0%
GGTTGAATTGCAGCGCCTTG+AGG - chr8_1:56427748-56427767 Msa1202770:intron 55.0%
TCACAGCAACACGGACCCAG+CGG - chr8_1:56424842-56424861 Msa1202770:three_prime_UTR 60.0%
!! AGCGACGGTTGGTTGGTGGT+GGG + chr8_1:56424878-56424897 None:intergenic 60.0%
AGAGGAGAGCGACGGTTGGT+TGG + chr8_1:56424885-56424904 None:intergenic 60.0%
GAGAGAGGAGAGGAGAGCGA+CGG + chr8_1:56424893-56424912 None:intergenic 60.0%
!! GGTGGTTTGCTGCCGGAAGA+TGG + chr8_1:56425993-56426012 None:intergenic 60.0%
AAGCTAGCCCGCTTTCGACG+GGG + chr8_1:56426095-56426114 None:intergenic 60.0%
CAAGCTAGCCCGCTTTCGAC+GGG + chr8_1:56426096-56426115 None:intergenic 60.0%
GAAGCAACGCAACGCACCAG+AGG + chr8_1:56426123-56426142 None:intergenic 60.0%
! GTCGTCCAGGGCCTTATGCT+TGG - chr8_1:56426198-56426217 Msa1202770:intron 60.0%
GCAGCGCCGTGCCTTTATAC+TGG - chr8_1:56426307-56426326 Msa1202770:intron 60.0%
GTCCGTATTACTGCCCCCTG+TGG - chr8_1:56427255-56427274 Msa1202770:intron 60.0%
!! GGTTGGTTGGTGGTGGGTGG+CGG + chr8_1:56424872-56424891 None:intergenic 65.0%
!! GACGGTTGGTTGGTGGTGGG+TGG + chr8_1:56424875-56424894 None:intergenic 65.0%
!! GAGCGACGGTTGGTTGGTGG+TGG + chr8_1:56424879-56424898 None:intergenic 65.0%
! GGAGAGCGACGGTTGGTTGG+TGG + chr8_1:56424882-56424901 None:intergenic 65.0%
GAGGAGAGGAGAGCGACGGT+TGG + chr8_1:56424889-56424908 None:intergenic 65.0%
!! CGGGCTAGCTTGAGACCCTC+TGG - chr8_1:56426104-56426123 Msa1202770:intron 65.0%
!! GGTTGGTGGTGGGTGGCGGT+GGG + chr8_1:56424868-56424887 None:intergenic 70.0%
!! TGGTTGGTGGTGGGTGGCGG+TGG + chr8_1:56424869-56424888 None:intergenic 70.0%
!! GTGGGTGGCGGTGGGCCGCT+GGG + chr8_1:56424860-56424879 None:intergenic 80.0%
!! GGTGGGTGGCGGTGGGCCGC+TGG + chr8_1:56424861-56424880 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 56424790 56428078 56424790 ID=Msa1202770;Name=Msa1202770
chr8_1 mRNA 56424790 56428078 56424790 ID=Msa1202770-mRNA-1;Parent=Msa1202770;Name=Msa1202770-mRNA-1;_AED=0.04;_eAED=0.04;_QI=178|1|1|1|0.66|0.5|4|282|180
chr8_1 exon 56424790 56425236 56424790 ID=Msa1202770-mRNA-1:exon:18358;Parent=Msa1202770-mRNA-1
chr8_1 exon 56426540 56426661 56426540 ID=Msa1202770-mRNA-1:exon:18357;Parent=Msa1202770-mRNA-1
chr8_1 exon 56426743 56427013 56426743 ID=Msa1202770-mRNA-1:exon:18356;Parent=Msa1202770-mRNA-1
chr8_1 exon 56427916 56428078 56427916 ID=Msa1202770-mRNA-1:exon:18355;Parent=Msa1202770-mRNA-1
chr8_1 five_prime_UTR 56427916 56428078 56427916 ID=Msa1202770-mRNA-1:five_prime_utr;Parent=Msa1202770-mRNA-1
chr8_1 five_prime_UTR 56426999 56427013 56426999 ID=Msa1202770-mRNA-1:five_prime_utr;Parent=Msa1202770-mRNA-1
chr8_1 CDS 56426743 56426998 56426743 ID=Msa1202770-mRNA-1:cds;Parent=Msa1202770-mRNA-1
chr8_1 CDS 56426540 56426661 56426540 ID=Msa1202770-mRNA-1:cds;Parent=Msa1202770-mRNA-1
chr8_1 CDS 56425072 56425236 56425072 ID=Msa1202770-mRNA-1:cds;Parent=Msa1202770-mRNA-1
chr8_1 three_prime_UTR 56424790 56425071 56424790 ID=Msa1202770-mRNA-1:three_prime_utr;Parent=Msa1202770-mRNA-1
Gene Sequence

>Msa1202770

ATGAGATTCGGAAGAGGAGTCCTCGGGAATGTTTTACGCCCTCTGATCTCACTCTCGTCGTCAAGGACGGTAGCAACTTCACAAATCTCCTCCACATTGCCGTTTCATTCTTCTTTGCAACCATCTTCCGGCAGCAAACCACCCCAATTCCTTCTTCCCTTTTTGAGCCACTTTCACAGCTTGACAGACACTCGTTTTCCCAAGAGACGACCTTCTGATAAACCCCGTCGAAAGCGGGCTAGCTTGAGACCCTCTGGGCCTTATGCTTGGGTTGAACACACAACTGGCGAGACCATACTTCCCAATAAGCCTAATCAAGGGAGCATCAAGAGGAGGAATGAGAAGAAACGCATGAGGCAGCGCCGTGCCTTTATACTGGCGGAAAAGAAGAAAAGGAAAGCTCAGATGCAAGAGGCTAAGCGGAAGAAGAACGTTAAGAAGGTAGAGCGTAAAATGGCTGCAGTTGCAAGGGAAAGAGAGTGGGCAGAAAGACTGGTTGAATTGCAGCGCCTTGAGGAAGAGAAGAAAAAGTCTATGGCTTAA

Protein sequence

>Msa1202770

MRFGRGVLGNVLRPLISLSSSRTVATSQISSTLPFHSSLQPSSGSKPPQFLLPFLSHFHSLTDTRFPKRRPSDKPRRKRASLRPSGPYAWVEHTTGETILPNKPNQGSIKRRNEKKRMRQRRAFILAEKKKRKAQMQEAKRKKNVKKVERKMAAVAREREWAERLVELQRLEEEKKKSMA*