Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1295540 | XP_024628404.1 | 97.778 | 180 | 4 | 0 | 1 | 180 | 1 | 180 | 3.97e-122 | 352 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1295540 | G7LDZ5 | 97.778 | 180 | 4 | 0 | 1 | 180 | 1 | 180 | 1.90e-122 | 352 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004790 | Msa1295540 | 0.806930 | 6.474690e-50 | -8.615850e-47 |
| Msa0029850 | Msa1295540 | -0.850729 | 1.406425e-60 | -8.615850e-47 |
| Msa0036140 | Msa1295540 | -0.807517 | 4.862783e-50 | -8.615850e-47 |
| Msa0042980 | Msa1295540 | 0.815308 | 9.879924e-52 | -8.615850e-47 |
| Msa0063350 | Msa1295540 | 0.811525 | 6.703490e-51 | -8.615850e-47 |
| Msa0075880 | Msa1295540 | -0.819580 | 1.077900e-52 | -8.615850e-47 |
| Msa0077180 | Msa1295540 | -0.825934 | 3.574875e-54 | -8.615850e-47 |
| Msa0607540 | Msa1295540 | -0.817129 | 3.869550e-52 | -8.615850e-47 |
| Msa0608620 | Msa1295540 | -0.825959 | 3.525961e-54 | -8.615850e-47 |
| Msa0621750 | Msa1295540 | 0.839880 | 1.215839e-57 | -8.615850e-47 |
| Msa0631200 | Msa1295540 | -0.814980 | 1.168555e-51 | -8.615850e-47 |
| Msa0647830 | Msa1295540 | -0.810786 | 9.694015e-51 | -8.615850e-47 |
| Msa0657610 | Msa1295540 | -0.826861 | 2.149982e-54 | -8.615850e-47 |
| Msa0658570 | Msa1295540 | -0.828928 | 6.843993e-55 | -8.615850e-47 |
| Msa0669440 | Msa1295540 | -0.828710 | 7.729116e-55 | -8.615850e-47 |
| Msa0672690 | Msa1295540 | -0.801370 | 9.298350e-49 | -8.615850e-47 |
| Msa0688070 | Msa1295540 | -0.812462 | 4.189001e-51 | -8.615850e-47 |
| Msa0690440 | Msa1295540 | -0.813406 | 2.600789e-51 | -8.615850e-47 |
| Msa0711790 | Msa1295540 | -0.812632 | 3.844439e-51 | -8.615850e-47 |
| Msa0722910 | Msa1295540 | -0.803270 | 3.777684e-49 | -8.615850e-47 |
| Msa0723110 | Msa1295540 | -0.820268 | 7.503772e-53 | -8.615850e-47 |
| Msa0744170 | Msa1295540 | 0.856291 | 3.553242e-62 | -8.615850e-47 |
| Msa0745260 | Msa1295540 | 0.812983 | 3.221002e-51 | -8.615850e-47 |
| Msa0747260 | Msa1295540 | -0.810824 | 9.513272e-51 | -8.615850e-47 |
| Msa0777570 | Msa1295540 | 0.811255 | 7.670467e-51 | -8.615850e-47 |
| Msa0788070 | Msa1295540 | 0.825252 | 5.188540e-54 | -8.615850e-47 |
| Msa0825240 | Msa1295540 | 0.831303 | 1.801623e-55 | -8.615850e-47 |
| Msa0125050 | Msa1295540 | -0.817695 | 2.886368e-52 | -8.615850e-47 |
| Msa0140510 | Msa1295540 | 0.800411 | 1.459342e-48 | -8.615850e-47 |
| Msa0140860 | Msa1295540 | -0.804070 | 2.576517e-49 | -8.615850e-47 |
| Msa0145310 | Msa1295540 | -0.811560 | 6.585986e-51 | -8.615850e-47 |
| Msa0169820 | Msa1295540 | -0.853510 | 2.278441e-61 | -8.615850e-47 |
| Msa0175390 | Msa1295540 | -0.818891 | 1.546642e-52 | -8.615850e-47 |
| Msa0178860 | Msa1295540 | 0.861401 | 1.053277e-63 | -8.615850e-47 |
| Msa0183010 | Msa1295540 | 0.837538 | 4.901108e-57 | -8.615850e-47 |
| Msa0199800 | Msa1295540 | 0.837913 | 3.925969e-57 | -8.615850e-47 |
| Msa0213040 | Msa1295540 | -0.831866 | 1.309291e-55 | -8.615850e-47 |
| Msa0215320 | Msa1295540 | 0.804120 | 2.515462e-49 | -8.615850e-47 |
| Msa0223410 | Msa1295540 | 0.837570 | 4.807263e-57 | -8.615850e-47 |
| Msa0226890 | Msa1295540 | -0.800070 | 1.712414e-48 | -8.615850e-47 |
| Msa0230640 | Msa1295540 | 0.853151 | 2.887925e-61 | -8.615850e-47 |
| Msa1224580 | Msa1295540 | 0.837420 | 5.251848e-57 | -8.615850e-47 |
| Msa1225730 | Msa1295540 | 0.813961 | 1.963902e-51 | -8.615850e-47 |
| Msa1229520 | Msa1295540 | 0.856450 | 3.191983e-62 | -8.615850e-47 |
| Msa1243100 | Msa1295540 | -0.801759 | 7.737776e-49 | -8.615850e-47 |
| Msa1255090 | Msa1295540 | 0.879236 | 1.469556e-69 | -8.615850e-47 |
| Msa1258380 | Msa1295540 | 0.854592 | 1.110905e-61 | -8.615850e-47 |
| Msa1259590 | Msa1295540 | 0.824064 | 9.882259e-54 | -8.615850e-47 |
| Msa1263290 | Msa1295540 | 0.813575 | 2.387817e-51 | -8.615850e-47 |
| Msa1265340 | Msa1295540 | 0.804845 | 1.776763e-49 | -8.615850e-47 |
| Msa1267060 | Msa1295540 | -0.829812 | 4.174505e-55 | -8.615850e-47 |
| Msa1271970 | Msa1295540 | 0.810537 | 1.097078e-50 | -8.615850e-47 |
| Msa1295540 | Msa1298510 | -0.802783 | 4.763232e-49 | -8.615850e-47 |
| Msa1295540 | Msa1299290 | 0.838909 | 2.172743e-57 | -8.615850e-47 |
| Msa1295540 | Msa1299300 | 0.800313 | 1.528131e-48 | -8.615850e-47 |
| Msa1295540 | Msa1302190 | 0.819574 | 1.081343e-52 | -8.615850e-47 |
| Msa1295540 | Msa1305190 | -0.812651 | 3.808743e-51 | -8.615850e-47 |
| Msa1295540 | Msa1305340 | -0.810525 | 1.103637e-50 | -8.615850e-47 |
| Msa1295540 | Msa1305350 | -0.801403 | 9.155857e-49 | -8.615850e-47 |
| Msa1295540 | Msa1307740 | -0.822150 | 2.762229e-53 | -8.615850e-47 |
| Msa1295540 | Msa1310770 | 0.808579 | 2.889830e-50 | -8.615850e-47 |
| Msa1295540 | Msa1322190 | -0.816539 | 5.250549e-52 | -8.615850e-47 |
| Msa1295540 | Msa1325860 | 0.832092 | 1.151506e-55 | -8.615850e-47 |
| Msa1295540 | Msa1332040 | 0.811995 | 5.297541e-51 | -8.615850e-47 |
| Msa1295540 | Msa1335710 | -0.804285 | 2.324204e-49 | -8.615850e-47 |
| Msa1295540 | Msa1348470 | 0.808236 | 3.419409e-50 | -8.615850e-47 |
| Msa1295540 | Msa1359650 | 0.832274 | 1.037752e-55 | -8.615850e-47 |
| Msa1295540 | Msa1364330 | 0.828873 | 7.058717e-55 | -8.615850e-47 |
| Msa1295540 | Msa1376890 | -0.827922 | 1.197257e-54 | -8.615850e-47 |
| Msa1295540 | Msa1393040 | -0.812173 | 4.842631e-51 | -8.615850e-47 |
| Msa1295540 | Msa1394540 | -0.803874 | 2.831006e-49 | -8.615850e-47 |
| Msa1295540 | Msa1401530 | -0.825500 | 4.532347e-54 | -8.615850e-47 |
| Msa1295540 | Msa1403340 | -0.852606 | 4.134954e-61 | -8.615850e-47 |
| Msa1295540 | Msa1404240 | 0.804052 | 2.598754e-49 | -8.615850e-47 |
| Msa1295540 | Msa1416140 | 0.819223 | 1.300361e-52 | -8.615850e-47 |
| Msa1295540 | Msa1444250 | 0.858578 | 7.482425e-63 | -8.615850e-47 |
| Msa1295540 | Msa1445030 | -0.803425 | 3.507305e-49 | -8.615850e-47 |
| Msa1295540 | Msa1451620 | 0.860918 | 1.477049e-63 | -8.615850e-47 |
| Msa1295540 | Msa1459950 | -0.814803 | 1.278959e-51 | -8.615850e-47 |
| Msa1295540 | Msa1461810 | 0.847120 | 1.414146e-59 | -8.615850e-47 |
| Msa1295540 | Msa1462070 | -0.803913 | 2.778229e-49 | -8.615850e-47 |
| Msa1295540 | Msa1464940 | -0.817250 | 3.635880e-52 | -8.615850e-47 |
| Msa0379640 | Msa1295540 | -0.812481 | 4.149367e-51 | -8.615850e-47 |
| Msa0381600 | Msa1295540 | 0.842126 | 3.128197e-58 | -8.615850e-47 |
| Msa0383490 | Msa1295540 | 0.818221 | 2.194597e-52 | -8.615850e-47 |
| Msa0387280 | Msa1295540 | -0.822139 | 2.778512e-53 | -8.615850e-47 |
| Msa0389810 | Msa1295540 | -0.828158 | 1.050017e-54 | -8.615850e-47 |
| Msa0390400 | Msa1295540 | 0.815165 | 1.063306e-51 | -8.615850e-47 |
| Msa0392040 | Msa1295540 | 0.815981 | 6.997364e-52 | -8.615850e-47 |
| Msa0394340 | Msa1295540 | -0.813044 | 3.124184e-51 | -8.615850e-47 |
| Msa0412840 | Msa1295540 | -0.857292 | 1.802542e-62 | -8.615850e-47 |
| Msa0425790 | Msa1295540 | -0.815427 | 9.296206e-52 | -8.615850e-47 |
| Msa0431060 | Msa1295540 | -0.805428 | 1.341497e-49 | -8.615850e-47 |
| Msa0433410 | Msa1295540 | 0.864731 | 9.849308e-65 | -8.615850e-47 |
| Msa0442200 | Msa1295540 | -0.821695 | 3.521764e-53 | -8.615850e-47 |
| Msa0444750 | Msa1295540 | 0.828742 | 7.593075e-55 | -8.615850e-47 |
| Msa0453330 | Msa1295540 | -0.802341 | 5.873435e-49 | -8.615850e-47 |
| Msa0453350 | Msa1295540 | -0.808054 | 3.739800e-50 | -8.615850e-47 |
| Msa0457510 | Msa1295540 | -0.848379 | 6.363780e-60 | -8.615850e-47 |
| Msa0465670 | Msa1295540 | 0.839486 | 1.539699e-57 | -8.615850e-47 |
| Msa0468130 | Msa1295540 | -0.822775 | 1.977306e-53 | -8.615850e-47 |
| Msa0469940 | Msa1295540 | 0.845548 | 3.792369e-59 | -8.615850e-47 |
| Msa0472960 | Msa1295540 | 0.810016 | 1.421357e-50 | -8.615850e-47 |
| Msa0477130 | Msa1295540 | 0.865091 | 7.593530e-65 | -8.615850e-47 |
| Msa0482190 | Msa1295540 | 0.854908 | 8.995896e-62 | -8.615850e-47 |
| Msa0982270 | Msa1295540 | -0.827435 | 1.566950e-54 | -8.615850e-47 |
| Msa0992490 | Msa1295540 | 0.829769 | 4.275946e-55 | -8.615850e-47 |
| Msa1006850 | Msa1295540 | -0.803822 | 2.902100e-49 | -8.615850e-47 |
| Msa1018990 | Msa1295540 | 0.811069 | 8.418586e-51 | -8.615850e-47 |
| Msa1033410 | Msa1295540 | 0.822055 | 2.906525e-53 | -8.615850e-47 |
| Msa1041600 | Msa1295540 | 0.840073 | 1.083033e-57 | -8.615850e-47 |
| Msa1044420 | Msa1295540 | -0.801773 | 7.686891e-49 | -8.615850e-47 |
| Msa1054410 | Msa1295540 | -0.822446 | 2.359269e-53 | -8.615850e-47 |
| Msa1062920 | Msa1295540 | -0.808251 | 3.394143e-50 | -8.615850e-47 |
| Msa1068200 | Msa1295540 | 0.816362 | 5.749783e-52 | -8.615850e-47 |
| Msa1073070 | Msa1295540 | 0.837439 | 5.193644e-57 | -8.615850e-47 |
| Msa1075080 | Msa1295540 | 0.844057 | 9.571068e-59 | -8.615850e-47 |
| Msa1075220 | Msa1295540 | 0.863205 | 2.938571e-64 | -8.615850e-47 |
| Msa1079730 | Msa1295540 | 0.867493 | 1.313729e-65 | -8.615850e-47 |
| Msa1090260 | Msa1295540 | -0.813560 | 2.406622e-51 | -8.615850e-47 |
| Msa0249560 | Msa1295540 | -0.802675 | 5.011930e-49 | -8.615850e-47 |
| Msa0253340 | Msa1295540 | -0.829421 | 5.196179e-55 | -8.615850e-47 |
| Msa0260270 | Msa1295540 | 0.814417 | 1.557373e-51 | -8.615850e-47 |
| Msa0292170 | Msa1295540 | -0.841251 | 5.321924e-58 | -8.615850e-47 |
| Msa0302580 | Msa1295540 | 0.837614 | 4.683733e-57 | -8.615850e-47 |
| Msa0306210 | Msa1295540 | 0.858411 | 8.394527e-63 | -8.615850e-47 |
| Msa0315290 | Msa1295540 | -0.820401 | 6.992779e-53 | -8.615850e-47 |
| Msa0330390 | Msa1295540 | -0.801307 | 9.576876e-49 | -8.615850e-47 |
| Msa0338000 | Msa1295540 | -0.811499 | 6.790071e-51 | -8.615850e-47 |
| Msa0340450 | Msa1295540 | -0.828530 | 8.540428e-55 | -8.615850e-47 |
| Msa0344530 | Msa1295540 | -0.803657 | 3.139925e-49 | -8.615850e-47 |
| Msa0344690 | Msa1295540 | 0.838549 | 2.692221e-57 | -8.615850e-47 |
| Msa0347610 | Msa1295540 | -0.817065 | 4.000136e-52 | -8.615850e-47 |
| Msa0350320 | Msa1295540 | 0.839774 | 1.295470e-57 | -8.615850e-47 |
| Msa1116130 | Msa1295540 | 0.858380 | 8.570450e-63 | -8.615850e-47 |
| Msa1121450 | Msa1295540 | 0.858727 | 6.755673e-63 | -8.615850e-47 |
| Msa1124540 | Msa1295540 | 0.897809 | 9.806441e-77 | -8.615850e-47 |
| Msa1139000 | Msa1295540 | 0.844800 | 6.041495e-59 | -8.615850e-47 |
| Msa1143930 | Msa1295540 | 0.835960 | 1.238044e-56 | -8.615850e-47 |
| Msa1144720 | Msa1295540 | 0.842390 | 2.662240e-58 | -8.615850e-47 |
| Msa1156340 | Msa1295540 | 0.820736 | 5.857669e-53 | -8.615850e-47 |
| Msa1162550 | Msa1295540 | 0.847109 | 1.423167e-59 | -8.615850e-47 |
| Msa1166500 | Msa1295540 | 0.841802 | 3.809280e-58 | -8.615850e-47 |
| Msa1168040 | Msa1295540 | 0.870595 | 1.296346e-66 | -8.615850e-47 |
| Msa1182620 | Msa1295540 | 0.801911 | 7.199846e-49 | -8.615850e-47 |
| Msa1183100 | Msa1295540 | 0.923792 | 1.664660e-89 | -8.615850e-47 |
| Msa1202770 | Msa1295540 | 0.994738 | 8.944028e-210 | -8.615850e-47 |
| Msa1207380 | Msa1295540 | -0.802324 | 5.921570e-49 | -8.615850e-47 |
| Msa1211140 | Msa1295540 | 0.846190 | 2.537562e-59 | -8.615850e-47 |
| Msa1217430 | Msa1295540 | 0.837378 | 5.386175e-57 | -8.615850e-47 |
| Msa1217810 | Msa1295540 | -0.801521 | 8.659482e-49 | -8.615850e-47 |
| Msa1224480 | Msa1295540 | -0.812156 | 4.885709e-51 | -8.615850e-47 |
| Msa0485500 | Msa1295540 | 0.851359 | 9.343926e-61 | -8.615850e-47 |
| Msa0521740 | Msa1295540 | -0.803370 | 3.601267e-49 | -8.615850e-47 |
| Msa0532810 | Msa1295540 | 0.837732 | 4.370536e-57 | -8.615850e-47 |
| Msa0536220 | Msa1295540 | -0.825766 | 3.918665e-54 | -8.615850e-47 |
| Msa0553460 | Msa1295540 | -0.821425 | 4.066239e-53 | -8.615850e-47 |
| Msa0555020 | Msa1295540 | -0.820033 | 8.491695e-53 | -8.615850e-47 |
| Msa0558690 | Msa1295540 | -0.800556 | 1.363477e-48 | -8.615850e-47 |
| Msa0585230 | Msa1295540 | -0.811536 | 6.665577e-51 | -8.615850e-47 |
| Msa0598830 | Msa1295540 | 0.826624 | 2.448873e-54 | -8.615850e-47 |
| Msa0599890 | Msa1295540 | -0.817219 | 3.694424e-52 | -8.615850e-47 |
| Msa0843250 | Msa1295540 | -0.815125 | 1.084968e-51 | -8.615850e-47 |
| Msa0844490 | Msa1295540 | -0.807317 | 5.361291e-50 | -8.615850e-47 |
| Msa0864470 | Msa1295540 | 0.854820 | 9.539885e-62 | -8.615850e-47 |
| Msa0865510 | Msa1295540 | 0.809933 | 1.481154e-50 | -8.615850e-47 |
| Msa0876850 | Msa1295540 | 0.840437 | 8.701067e-58 | -8.615850e-47 |
| Msa0891600 | Msa1295540 | 0.806454 | 8.161325e-50 | -8.615850e-47 |
| Msa0902770 | Msa1295540 | 0.805578 | 1.247833e-49 | -8.615850e-47 |
| Msa0913480 | Msa1295540 | 0.816001 | 6.925259e-52 | -8.615850e-47 |
| Msa0942080 | Msa1295540 | 0.864597 | 1.084402e-64 | -8.615850e-47 |
| Msa0942550 | Msa1295540 | 0.861408 | 1.047702e-63 | -8.615850e-47 |
| Msa0942560 | Msa1295540 | 0.864199 | 1.443747e-64 | -8.615850e-47 |
| Msa0946690 | Msa1295540 | 0.828082 | 1.095150e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1295540 | MtrunA17_Chr8g0373081 | 97.778 | 180 | 4 | 0 | 1 | 180 | 1 | 180 | 3.65e-126 | 352 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1295540 | AT3G51010.1 | 54.450 | 191 | 70 | 4 | 3 | 180 | 1 | 187 | 1.13e-61 | 189 |
Find 84 sgRNAs with CRISPR-Local
Find 260 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCCCTTGATTAGGCTTAT+TGG | 0.196474 | 8_3:+53689224 | None:intergenic |
| TCTATGGCTTAAATTTATTT+AGG | 0.203158 | 8_3:-53687333 | Msa1295540:exon |
| GGTGGGTGGCGGTGGGCCGC+TGG | 0.220759 | 8_3:+53690621 | None:intergenic |
| GTTGCGTGCTTTCGTGTTAA+TGG | 0.250809 | 8_3:+53690563 | None:intergenic |
| CTCCCTTGATTAGGCTTATT+GGG | 0.266061 | 8_3:+53689225 | None:intergenic |
| AGACGGTTCAAATTATTAAT+TGG | 0.281969 | 8_3:+53687271 | None:intergenic |
| TGGTTGGTGGTGGGTGGCGG+TGG | 0.302438 | 8_3:+53690613 | None:intergenic |
| CTCTTGATGCTCCCTTGATT+AGG | 0.327155 | 8_3:+53689216 | None:intergenic |
| GTCGTCCAGGGCCTTATGCT+TGG | 0.331141 | 8_3:-53689278 | Msa1295540:intron |
| ATTAGGCTTATTGGGAAGTA+TGG | 0.347303 | 8_3:+53689233 | None:intergenic |
| TTGCGTGCTTTCGTGTTAAT+GGG | 0.371163 | 8_3:+53690564 | None:intergenic |
| TCTTCTTTGCAACCATCTTC+CGG | 0.379881 | 8_3:-53689498 | Msa1295540:CDS |
| GTGGGTGGCGGTGGGCCGCT+GGG | 0.381686 | 8_3:+53690622 | None:intergenic |
| CATATGATGTTAATATAAAC+AGG | 0.386772 | 8_3:+53687105 | None:intergenic |
| GGTTGGTTGGTGGTGGGTGG+CGG | 0.389072 | 8_3:+53690610 | None:intergenic |
| TCGTCCAGGGCCTTATGCTT+GGG | 0.393020 | 8_3:-53689277 | Msa1295540:intron |
| GAGCGACGGTTGGTTGGTGG+TGG | 0.396754 | 8_3:+53690603 | None:intergenic |
| CAAGCTAGCCCGCTTTCGAC+GGG | 0.400130 | 8_3:+53689383 | None:intergenic |
| TAAGAAGGTAGAGCGTAAAA+TGG | 0.403135 | 8_3:-53687430 | Msa1295540:CDS |
| ATGCAAGCTCACCGTGCATA+TGG | 0.410402 | 8_3:+53687067 | None:intergenic |
| GGTGGTTTGCTGCCGGAAGA+TGG | 0.417214 | 8_3:+53689486 | None:intergenic |
| GCTAATATATACCAGTATAA+AGG | 0.421466 | 8_3:+53689158 | None:intergenic |
| GTTTATATTAACATCATATG+TGG | 0.425964 | 8_3:-53687102 | Msa1295540:three_prime_UTR |
| GCTGTGAAAGTGGCTCAAAA+AGG | 0.426398 | 8_3:+53689449 | None:intergenic |
| TCAAGCTAGCCCGCTTTCGA+CGG | 0.435563 | 8_3:+53689382 | None:intergenic |
| TTGTTCTACTTTACTCTGGA+CGG | 0.447098 | 8_3:-53687136 | Msa1295540:three_prime_UTR |
| TTATCAGAAGGTCGTCTCTT+GGG | 0.451983 | 8_3:+53689408 | None:intergenic |
| AAGAGAGTGGGCAGAAAGAC+TGG | 0.452985 | 8_3:-53687391 | Msa1295540:CDS |
| GCTTGGGTTGAACACACAAC+TGG | 0.459757 | 8_3:-53689261 | Msa1295540:CDS |
| CTTCCCAATAAGCCTAATCA+AGG | 0.465217 | 8_3:-53689228 | Msa1295540:CDS |
| AAAACTGACCTGAAAACTGA+TGG | 0.466997 | 8_3:+53690540 | None:intergenic |
| TGATAAACCCCGTCGAAAGC+GGG | 0.471130 | 8_3:-53689391 | Msa1295540:CDS |
| GGTTGGTGGTGGGTGGCGGT+GGG | 0.471297 | 8_3:+53690614 | None:intergenic |
| GTGTGTTCAACCCAAGCATA+AGG | 0.483354 | 8_3:+53689267 | None:intergenic |
| TGTTCTACTTTACTCTGGAC+GGG | 0.484769 | 8_3:-53687135 | Msa1295540:three_prime_UTR |
| GCAGCGCCGTGCCTTTATAC+TGG | 0.484793 | 8_3:-53689169 | Msa1295540:intron |
| TTTATCAGAAGGTCGTCTCT+TGG | 0.486620 | 8_3:+53689407 | None:intergenic |
| GGAGAGCGACGGTTGGTTGG+TGG | 0.499459 | 8_3:+53690600 | None:intergenic |
| GGCATTAACAATTGCAAATG+AGG | 0.499920 | 8_3:+53687309 | None:intergenic |
| AGCGACGGTTGGTTGGTGGT+GGG | 0.500113 | 8_3:+53690604 | None:intergenic |
| TCATTTGCAATTGTTAATGC+CGG | 0.509743 | 8_3:-53687307 | Msa1295540:three_prime_UTR |
| TTTCGACGGGGTTTATCAGA+AGG | 0.512993 | 8_3:+53689396 | None:intergenic |
| AGATTCGGAAGAGGAGTCCT+CGG | 0.513910 | 8_3:-53689603 | Msa1295540:CDS |
| GCGGAAGAAGAACGTTAAGA+AGG | 0.519807 | 8_3:-53687445 | Msa1295540:CDS |
| GAATTGGGGTGGTTTGCTGC+CGG | 0.523920 | 8_3:+53689479 | None:intergenic |
| TGATCTCACTCTCGTCGTCA+AGG | 0.527754 | 8_3:-53689563 | Msa1295540:CDS |
| CTCACTCTCGTCGTCAAGGA+CGG | 0.532447 | 8_3:-53689559 | Msa1295540:CDS |
| TGTAGGCGGAAAAGAAGAAA+AGG | 0.538675 | 8_3:-53687491 | Msa1295540:intron |
| TTTATATTAACATCATATGT+GGG | 0.541890 | 8_3:-53687101 | Msa1295540:three_prime_UTR |
| AGAGGAGAGCGACGGTTGGT+TGG | 0.548202 | 8_3:+53690597 | None:intergenic |
| GACGGTTGGTTGGTGGTGGG+TGG | 0.557346 | 8_3:+53690607 | None:intergenic |
| TGTTGCTGTGAGAAAGAAGA+AGG | 0.560710 | 8_3:+53690649 | None:intergenic |
| TGTCTGTCAAGCTGTGAAAG+TGG | 0.568033 | 8_3:+53689439 | None:intergenic |
| GTAAAATGGCTGCAGTTGCA+AGG | 0.569157 | 8_3:-53687416 | Msa1295540:CDS |
| GAGGAGAGGAGAGCGACGGT+TGG | 0.573324 | 8_3:+53690593 | None:intergenic |
| CTGATAAACCCCGTCGAAAG+CGG | 0.575794 | 8_3:-53689392 | Msa1295540:CDS |
| TAAAATGGCTGCAGTTGCAA+GGG | 0.587269 | 8_3:-53687415 | Msa1295540:CDS |
| GGTTGCAAAGAAGAATGAAA+CGG | 0.590402 | 8_3:+53689507 | None:intergenic |
| GATTCGGAAGAGGAGTCCTC+GGG | 0.593998 | 8_3:-53689602 | Msa1295540:CDS |
| GGTTGAATTGCAGCGCCTTG+AGG | 0.594805 | 8_3:-53687370 | Msa1295540:CDS |
| AGTTGCAAGGGAAAGAGAGT+GGG | 0.599831 | 8_3:-53687403 | Msa1295540:CDS |
| AAACTGACCTGAAAACTGAT+GGG | 0.600952 | 8_3:+53690541 | None:intergenic |
| TCGTGTTAATGGGCTGAGAG+AGG | 0.602161 | 8_3:+53690574 | None:intergenic |
| GAAGATATAGTATGTGTAGA+CGG | 0.603025 | 8_3:+53687254 | None:intergenic |
| CTCAGATGCAAGAGGCTAAG+CGG | 0.604543 | 8_3:-53687464 | Msa1295540:CDS |
| CAGTTGCAAGGGAAAGAGAG+TGG | 0.605780 | 8_3:-53687404 | Msa1295540:CDS |
| ACGACGAGAGTGAGATCAGA+GGG | 0.612151 | 8_3:+53689568 | None:intergenic |
| TTTAGATCTGTCCATATGCA+CGG | 0.618218 | 8_3:-53687078 | Msa1295540:three_prime_UTR |
| TCTTCTTTCTCACAGCAACA+CGG | 0.624449 | 8_3:-53690646 | Msa1295540:five_prime_UTR |
| GAGAGAGGAGAGGAGAGCGA+CGG | 0.630646 | 8_3:+53690589 | None:intergenic |
| TTCCCAATAAGCCTAATCAA+GGG | 0.632102 | 8_3:-53689227 | Msa1295540:CDS |
| CTAATCAAGGGAGCATCAAG+AGG | 0.644871 | 8_3:-53689215 | Msa1295540:CDS |
| TATATACCAGTATAAAGGCA+CGG | 0.647751 | 8_3:+53689163 | None:intergenic |
| AAGGAAAGCTCAGATGCAAG+AGG | 0.649661 | 8_3:-53687472 | Msa1295540:CDS |
| AAGCTAGCCCGCTTTCGACG+GGG | 0.650879 | 8_3:+53689384 | None:intergenic |
| AGAATGAAACGGCAATGTGG+AGG | 0.653637 | 8_3:+53689518 | None:intergenic |
| AAGGGAAGAAGGAATTGGGG+TGG | 0.654054 | 8_3:+53689468 | None:intergenic |
| ATCAAGGGAGCATCAAGAGG+AGG | 0.654645 | 8_3:-53689212 | Msa1295540:CDS |
| GGAATGAGAAGAAACGCATG+AGG | 0.662356 | 8_3:-53689191 | Msa1295540:CDS |
| AGAAGAATGAAACGGCAATG+TGG | 0.685252 | 8_3:+53689515 | None:intergenic |
| GACGACGAGAGTGAGATCAG+AGG | 0.687668 | 8_3:+53689567 | None:intergenic |
| TTAATGGGCTGAGAGAGGAG+AGG | 0.693145 | 8_3:+53690579 | None:intergenic |
| TCACAGCAACACGGACCCAG+CGG | 0.694597 | 8_3:-53690637 | Msa1295540:five_prime_UTR |
| GAGGGCGTAAAACATTCCCG+AGG | 0.745952 | 8_3:+53689586 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCACAAAAAAAAAAAAAAAA+AGG | + | chr8_3:53687611-53687630 | None:intergenic | 10.0% |
| !! | ATATATAAAATGAAATTAAG+TGG | + | chr8_3:53688618-53688637 | None:intergenic | 10.0% |
| !!! | TTAATTTCATTTTATATATC+AGG | - | chr8_3:53688619-53688638 | Msa1295540:intron | 10.0% |
| !!! | TCACAAAATTTTTTAAAAAA+TGG | - | chr8_3:53689040-53689059 | Msa1295540:intron | 10.0% |
| !!! | TTCATTTTTTTAAAAAGAAT+AGG | + | chr8_3:53690094-53690113 | None:intergenic | 10.0% |
| !! | TATCAATATAAAATCAACAA+AGG | + | chr8_3:53687406-53687425 | None:intergenic | 15.0% |
| !! | TAAATTATACATAGAAGTTT+AGG | - | chr8_3:53688947-53688966 | Msa1295540:intron | 15.0% |
| !! | TATTTAACATAAACTAATCT+TGG | - | chr8_3:53689089-53689108 | Msa1295540:intron | 15.0% |
| !!! | TTTTCAATATATACCATATT+AGG | - | chr8_3:53689263-53689282 | Msa1295540:CDS | 15.0% |
| !! | AATGAACATACAATTATATT+AGG | + | chr8_3:53690225-53690244 | None:intergenic | 15.0% |
| !! | TAATATAATTGTATGTTCAT+TGG | - | chr8_3:53690224-53690243 | Msa1295540:intron | 15.0% |
| !! | AATATAATTGTATGTTCATT+GGG | - | chr8_3:53690225-53690244 | Msa1295540:intron | 15.0% |
| !! | TTTATATTAACATCATATGT+GGG | - | chr8_3:53690650-53690669 | Msa1295540:five_prime_UTR | 15.0% |
| !! | TTATGAAGAATAATTGAATC+AGG | - | chr8_3:53687369-53687388 | Msa1295540:CDS | 20.0% |
| !! | AATGTCATTAATTGTTTGTT+AGG | - | chr8_3:53687801-53687820 | Msa1295540:intron | 20.0% |
| !! | GCTAAAAAACTAAATGTAAT+TGG | - | chr8_3:53687952-53687971 | Msa1295540:intron | 20.0% |
| !!! | TGAGTTGATTATAAAAAACA+AGG | + | chr8_3:53688040-53688059 | None:intergenic | 20.0% |
| !! | TCAGAGAAAAATTTGTATAT+TGG | - | chr8_3:53688096-53688115 | Msa1295540:intron | 20.0% |
| !! | TATGAGTTTCATTTAAATCT+TGG | + | chr8_3:53689729-53689748 | None:intergenic | 20.0% |
| !!! | TTTCTATTTTGTGGTTATTA+TGG | + | chr8_3:53689811-53689830 | None:intergenic | 20.0% |
| !!! | ACTTTCTTATTTCTATTTTG+TGG | + | chr8_3:53689820-53689839 | None:intergenic | 20.0% |
| !! | AAAAAATGAAAGTTTCTCTA+TGG | - | chr8_3:53690104-53690123 | Msa1295540:intron | 20.0% |
| !!! | AATTCTTCTATAAGGAATTT+TGG | + | chr8_3:53690137-53690156 | None:intergenic | 20.0% |
| !! | AAAGTTCAAATTCTTCTATA+AGG | + | chr8_3:53690145-53690164 | None:intergenic | 20.0% |
| !! | TTATAGAAGAATTTGAACTT+TGG | - | chr8_3:53690144-53690163 | Msa1295540:intron | 20.0% |
| !! | TCTATGGCTTAAATTTATTT+AGG | - | chr8_3:53690418-53690437 | Msa1295540:intron | 20.0% |
| !! | CATATGATGTTAATATAAAC+AGG | + | chr8_3:53690649-53690668 | None:intergenic | 20.0% |
| !! | GTTTATATTAACATCATATG+TGG | - | chr8_3:53690649-53690668 | Msa1295540:five_prime_UTR | 20.0% |
| !!! | TGAAATTGATTTTAGCCTTT+AGG | - | chr8_3:53687325-53687344 | Msa1295540:exon | 25.0% |
| !! | AAAATAAGGCATTTATGAGT+TGG | - | chr8_3:53687707-53687726 | Msa1295540:intron | 25.0% |
| ! | GCTAATATATACCAGTATAA+AGG | + | chr8_3:53688596-53688615 | None:intergenic | 25.0% |
| ! | CTTTGTGAATATTGTTTACT+AGG | - | chr8_3:53688722-53688741 | Msa1295540:intron | 25.0% |
| ! | TTCATGGAGTATAAACTATA+AGG | - | chr8_3:53688758-53688777 | Msa1295540:intron | 25.0% |
| ! | ATAAAAGCAAATACTTACAG+TGG | - | chr8_3:53689197-53689216 | Msa1295540:CDS | 25.0% |
| ! | CTGAAATAATATGCCTAATA+TGG | + | chr8_3:53689279-53689298 | None:intergenic | 25.0% |
| ! | GAGAAAAATGTAAAAAAAGG+TGG | + | chr8_3:53689373-53689392 | None:intergenic | 25.0% |
| ! | CGAGAGAAAAATGTAAAAAA+AGG | + | chr8_3:53689376-53689395 | None:intergenic | 25.0% |
| ! | ATTCAAAAAAATATGCTAGC+AGG | - | chr8_3:53689410-53689429 | Msa1295540:CDS | 25.0% |
| ! | TTCAAAAAAATATGCTAGCA+GGG | - | chr8_3:53689411-53689430 | Msa1295540:CDS | 25.0% |
| !! | ACTGATTTACATATGTTTCA+TGG | - | chr8_3:53689512-53689531 | Msa1295540:CDS | 25.0% |
| !!! | ATCTTGAGTAAATTTTTTGG+GGG | + | chr8_3:53689548-53689567 | None:intergenic | 25.0% |
| !!! | GATCTTGAGTAAATTTTTTG+GGG | + | chr8_3:53689549-53689568 | None:intergenic | 25.0% |
| !!! | GGATCTTGAGTAAATTTTTT+GGG | + | chr8_3:53689550-53689569 | None:intergenic | 25.0% |
| ! | ATACTTATGAACGATAGATA+AGG | - | chr8_3:53689578-53689597 | Msa1295540:CDS | 25.0% |
| ! | TTGACCTATATGTATGTTTA+AGG | - | chr8_3:53689854-53689873 | Msa1295540:intron | 25.0% |
| ! | GATACCTTAAACATACATAT+AGG | + | chr8_3:53689861-53689880 | None:intergenic | 25.0% |
| !! | TGTTATTCTAGCTATGTATT+AGG | - | chr8_3:53690025-53690044 | Msa1295540:intron | 25.0% |
| !! | GTTATTCTAGCTATGTATTA+GGG | - | chr8_3:53690026-53690045 | Msa1295540:intron | 25.0% |
| !! | AATAGGACATGTATTTTGTT+AGG | + | chr8_3:53690077-53690096 | None:intergenic | 25.0% |
| ! | AGACGGTTCAAATTATTAAT+TGG | + | chr8_3:53690483-53690502 | None:intergenic | 25.0% |
| !! | TTTTATGTTGTCTGATGATT+GGG | - | chr8_3:53690526-53690545 | Msa1295540:intron | 25.0% |
| ! | GTAGAACAAAAACAAAAGTA+AGG | + | chr8_3:53690604-53690623 | None:intergenic | 25.0% |
| GTAGTGAAAGTAATTGAATC+AGG | - | chr8_3:53687261-53687280 | Msa1295540:three_prime_UTR | 30.0% | |
| TTTCAGTAACGAAAACCTAA+AGG | + | chr8_3:53687343-53687362 | None:intergenic | 30.0% | |
| !! | ATATTGATAGTGTAGTAACC+CGG | - | chr8_3:53687417-53687436 | Msa1295540:CDS | 30.0% |
| TCCAGAATATATGATCCATT+TGG | - | chr8_3:53687635-53687654 | Msa1295540:intron | 30.0% | |
| CCAGAATATATGATCCATTT+GGG | - | chr8_3:53687636-53687655 | Msa1295540:intron | 30.0% | |
| ! | AGGAAGTTGAGTAATTTTCA+CGG | - | chr8_3:53687672-53687691 | Msa1295540:intron | 30.0% |
| ! | TTATGAGTTGGATATTCCAA+CGG | - | chr8_3:53687719-53687738 | Msa1295540:intron | 30.0% |
| TAGTCAAGTTCTATGTAAAG+TGG | - | chr8_3:53687772-53687791 | Msa1295540:intron | 30.0% | |
| TGATTTGAGCTTAAGGTTAA+CGG | + | chr8_3:53687853-53687872 | None:intergenic | 30.0% | |
| !! | TCTCAATTGATTTGAGCTTA+AGG | + | chr8_3:53687860-53687879 | None:intergenic | 30.0% |
| TATAATTGATGCAGCAGAAT+CGG | - | chr8_3:53687916-53687935 | Msa1295540:intron | 30.0% | |
| TGAATCAGTGTAGATTACTA+TGG | - | chr8_3:53688004-53688023 | Msa1295540:intron | 30.0% | |
| !!! | TCATACATTTTTAGTTCGCT+AGG | - | chr8_3:53688057-53688076 | Msa1295540:intron | 30.0% |
| !! | TTGTATATTGGTGATGTTGT+AGG | - | chr8_3:53688108-53688127 | Msa1295540:intron | 30.0% |
| TATATACCAGTATAAAGGCA+CGG | + | chr8_3:53688591-53688610 | None:intergenic | 30.0% | |
| AGGAAACATATCATCTTTCA+TGG | - | chr8_3:53688742-53688761 | Msa1295540:intron | 30.0% | |
| ATACATAGAAGTTTAGGTAG+TGG | - | chr8_3:53688953-53688972 | Msa1295540:intron | 30.0% | |
| CAATAGAAAGAGAAAGTAGA+AGG | - | chr8_3:53688990-53689009 | Msa1295540:intron | 30.0% | |
| ATAACAGCAAAGAAAACATG+AGG | + | chr8_3:53689156-53689175 | None:intergenic | 30.0% | |
| TGGTATATATTGAAAACCCA+GGG | + | chr8_3:53689259-53689278 | None:intergenic | 30.0% | |
| ATGGTATATATTGAAAACCC+AGG | + | chr8_3:53689260-53689279 | None:intergenic | 30.0% | |
| TCAAACAATTTAAACCACGA+TGG | - | chr8_3:53689461-53689480 | Msa1295540:CDS | 30.0% | |
| AAAATAATAATCTGCCATCG+TGG | + | chr8_3:53689478-53689497 | None:intergenic | 30.0% | |
| ACATATGTTTCATGGTTGTT+TGG | - | chr8_3:53689520-53689539 | Msa1295540:CDS | 30.0% | |
| !!! | CGGATCTTGAGTAAATTTTT+TGG | + | chr8_3:53689551-53689570 | None:intergenic | 30.0% |
| TATCGTTCATAAGTATTCAG+TGG | + | chr8_3:53689574-53689593 | None:intergenic | 30.0% | |
| !! | AGAAGTACTAGTGTTTATGA+TGG | + | chr8_3:53689667-53689686 | None:intergenic | 30.0% |
| GGTTATTATGGCTATAAGTA+TGG | + | chr8_3:53689799-53689818 | None:intergenic | 30.0% | |
| ATGTTTATCCAAAGACCATT+TGG | + | chr8_3:53690181-53690200 | None:intergenic | 30.0% | |
| GATAAACATAACTGTGATCA+TGG | - | chr8_3:53690192-53690211 | Msa1295540:intron | 30.0% | |
| TCATTTGCAATTGTTAATGC+CGG | - | chr8_3:53690444-53690463 | Msa1295540:intron | 30.0% | |
| GAAGATATAGTATGTGTAGA+CGG | + | chr8_3:53690500-53690519 | None:intergenic | 30.0% | |
| ! | GTTTTATGTTGTCTGATGAT+TGG | - | chr8_3:53690525-53690544 | Msa1295540:intron | 30.0% |
| GAACAAAAACAAAAGTAAGG+CGG | + | chr8_3:53690601-53690620 | None:intergenic | 30.0% | |
| ! | GTTTTTGTTCTACTTTACTC+TGG | - | chr8_3:53690611-53690630 | Msa1295540:five_prime_UTR | 30.0% |
| AAACTGACCTGAAAACTGAT+GGG | + | chr8_3:53687213-53687232 | None:intergenic | 35.0% | |
| AAAACTGACCTGAAAACTGA+TGG | + | chr8_3:53687214-53687233 | None:intergenic | 35.0% | |
| !! | TATTGATAGTGTAGTAACCC+GGG | - | chr8_3:53687418-53687437 | Msa1295540:CDS | 35.0% |
| ATACCAAGTGAACATGTCTA+GGG | - | chr8_3:53687489-53687508 | Msa1295540:CDS | 35.0% | |
| !! | AAGCATCGACTTCTCAAATT+TGG | + | chr8_3:53687541-53687560 | None:intergenic | 35.0% |
| CCCAAATGGATCATATATTC+TGG | + | chr8_3:53687639-53687658 | None:intergenic | 35.0% | |
| TATATGATCCATTTGGGTGA+AGG | - | chr8_3:53687642-53687661 | Msa1295540:intron | 35.0% | |
| TATATCATCCTTCACCCAAA+TGG | + | chr8_3:53687653-53687672 | None:intergenic | 35.0% | |
| ATTTGGGTGAAGGATGATAT+AGG | - | chr8_3:53687652-53687671 | Msa1295540:intron | 35.0% | |
| ! | AGTAATTTTCACGGCTTCAA+AGG | - | chr8_3:53687681-53687700 | Msa1295540:intron | 35.0% |
| ! | GTAATTTTCACGGCTTCAAA+GGG | - | chr8_3:53687682-53687701 | Msa1295540:intron | 35.0% |
| GGCTTCAAAGGGTAAAAATA+AGG | - | chr8_3:53687693-53687712 | Msa1295540:intron | 35.0% | |
| TTCATCATGATACTAACCGT+TGG | + | chr8_3:53687738-53687757 | None:intergenic | 35.0% | |
| ! | AATATTTTTCTCCTTCGTCC+AGG | - | chr8_3:53687826-53687845 | Msa1295540:intron | 35.0% |
| GTGTAGATTACTATGGTGAA+TGG | - | chr8_3:53688011-53688030 | Msa1295540:intron | 35.0% | |
| TGCACGAGAAAAATGAGATT+CGG | - | chr8_3:53688133-53688152 | Msa1295540:intron | 35.0% | |
| AGAAAAATGAGATTCGGAAG+AGG | - | chr8_3:53688139-53688158 | Msa1295540:intron | 35.0% | |
| GGTTGCAAAGAAGAATGAAA+CGG | + | chr8_3:53688247-53688266 | None:intergenic | 35.0% | |
| AAAAAGGGAAGAAGGAATTG+GGG | + | chr8_3:53688289-53688308 | None:intergenic | 35.0% | |
| CAAAAAGGGAAGAAGGAATT+GGG | + | chr8_3:53688290-53688309 | None:intergenic | 35.0% | |
| TCAAAAAGGGAAGAAGGAAT+TGG | + | chr8_3:53688291-53688310 | None:intergenic | 35.0% | |
| ATTAGGCTTATTGGGAAGTA+TGG | + | chr8_3:53688521-53688540 | None:intergenic | 35.0% | |
| TTCCCAATAAGCCTAATCAA+GGG | - | chr8_3:53688524-53688543 | Msa1295540:intron | 35.0% | |
| GACTCACACATGTAAATCAA+AGG | + | chr8_3:53688674-53688693 | None:intergenic | 35.0% | |
| ! | AACTATAAGGTGCTTGAGTT+TGG | - | chr8_3:53688771-53688790 | Msa1295540:intron | 35.0% |
| CAACAAGTTGTCACAAGAAA+GGG | + | chr8_3:53688921-53688940 | None:intergenic | 35.0% | |
| ! | GTTATGATAGAGCATCAAGA+TGG | + | chr8_3:53689115-53689134 | None:intergenic | 35.0% |
| AAAGCAAATACTTACAGTGG+CGG | - | chr8_3:53689200-53689219 | Msa1295540:CDS | 35.0% | |
| GGTATATATTGAAAACCCAG+GGG | + | chr8_3:53689258-53689277 | None:intergenic | 35.0% | |
| !! | ATTGTTTGAAAGCACCAAGT+GGG | + | chr8_3:53689450-53689469 | None:intergenic | 35.0% |
| !! | AATTGTTTGAAAGCACCAAG+TGG | + | chr8_3:53689451-53689470 | None:intergenic | 35.0% |
| ! | CACAGTGAAAGCATATTTAG+AGG | - | chr8_3:53689614-53689633 | Msa1295540:exon | 35.0% |
| AATCTTGGACCATCTGTATT+GGG | + | chr8_3:53689714-53689733 | None:intergenic | 35.0% | |
| AAATCTTGGACCATCTGTAT+TGG | + | chr8_3:53689715-53689734 | None:intergenic | 35.0% | |
| ATAAGAAAGTGACAACTGAG+AGG | - | chr8_3:53689830-53689849 | Msa1295540:intron | 35.0% | |
| CATACTATCATACCAGTATG+TGG | - | chr8_3:53689880-53689899 | Msa1295540:intron | 35.0% | |
| ! | ATTCTAGCTATGTATTAGGG+AGG | - | chr8_3:53690029-53690048 | Msa1295540:intron | 35.0% |
| TTGGTTGTATATCAGCCAAA+TGG | - | chr8_3:53690163-53690182 | Msa1295540:intron | 35.0% | |
| TATATCAGCCAAATGGTCTT+TGG | - | chr8_3:53690170-53690189 | Msa1295540:intron | 35.0% | |
| !!! | TTGGGAACTTTTTTGCATGT+AGG | - | chr8_3:53690243-53690262 | Msa1295540:intron | 35.0% |
| TAAGAAGGTAGAGCGTAAAA+TGG | - | chr8_3:53690321-53690340 | Msa1295540:intron | 35.0% | |
| !! | ACTTTTTCTTCTCTTCCTCA+AGG | + | chr8_3:53690399-53690418 | None:intergenic | 35.0% |
| GGAAGAGAAGAAAAAGTCTA+TGG | - | chr8_3:53690402-53690421 | Msa1295540:intron | 35.0% | |
| GGCATTAACAATTGCAAATG+AGG | + | chr8_3:53690445-53690464 | None:intergenic | 35.0% | |
| ! | TTAATGCCGGTCAAGTTTTT+GGG | - | chr8_3:53690457-53690476 | Msa1295540:intron | 35.0% |
| TTGTTCTACTTTACTCTGGA+CGG | - | chr8_3:53690615-53690634 | Msa1295540:five_prime_UTR | 35.0% | |
| TTTAGATCTGTCCATATGCA+CGG | - | chr8_3:53690673-53690692 | Msa1295540:five_prime_UTR | 35.0% | |
| TGTTGCTGTGAGAAAGAAGA+AGG | + | chr8_3:53687105-53687124 | None:intergenic | 40.0% | |
| TCTTCTTTCTCACAGCAACA+CGG | - | chr8_3:53687105-53687124 | Msa1295540:three_prime_UTR | 40.0% | |
| TTGCGTGCTTTCGTGTTAAT+GGG | + | chr8_3:53687190-53687209 | None:intergenic | 40.0% | |
| TCTTCGCATATTTCATAGCC+CGG | + | chr8_3:53687439-53687458 | None:intergenic | 40.0% | |
| CTAGACATGTTCACTTGGTA+TGG | + | chr8_3:53687490-53687509 | None:intergenic | 40.0% | |
| CATACCAAGTGAACATGTCT+AGG | - | chr8_3:53687488-53687507 | Msa1295540:CDS | 40.0% | |
| TCTATCACTCCATTAGACAG+TGG | + | chr8_3:53687568-53687587 | None:intergenic | 40.0% | |
| AGAAGAATGAAACGGCAATG+TGG | + | chr8_3:53688239-53688258 | None:intergenic | 40.0% | |
| TCTTCTTTGCAACCATCTTC+CGG | - | chr8_3:53688253-53688272 | Msa1295540:intron | 40.0% | |
| CTGTGAAAGTGGCTCAAAAA+GGG | + | chr8_3:53688304-53688323 | None:intergenic | 40.0% | |
| TTATCAGAAGGTCGTCTCTT+GGG | + | chr8_3:53688346-53688365 | None:intergenic | 40.0% | |
| TTTATCAGAAGGTCGTCTCT+TGG | + | chr8_3:53688347-53688366 | None:intergenic | 40.0% | |
| TTATGATGAACTTGTCGTCC+AGG | - | chr8_3:53688460-53688479 | Msa1295540:intron | 40.0% | |
| TATGATGAACTTGTCGTCCA+GGG | - | chr8_3:53688461-53688480 | Msa1295540:intron | 40.0% | |
| CTTCCCAATAAGCCTAATCA+AGG | - | chr8_3:53688523-53688542 | Msa1295540:intron | 40.0% | |
| CTCCCTTGATTAGGCTTATT+GGG | + | chr8_3:53688529-53688548 | None:intergenic | 40.0% | |
| !! | TTTGGAACAAAGGTGTTGTC+TGG | - | chr8_3:53688789-53688808 | Msa1295540:intron | 40.0% |
| CCAACAAGTTGTCACAAGAA+AGG | + | chr8_3:53688922-53688941 | None:intergenic | 40.0% | |
| CCTTTCTTGTGACAACTTGT+TGG | - | chr8_3:53688919-53688938 | Msa1295540:intron | 40.0% | |
| ! | CATGTTTTCAGTTGTTGCAG+CGG | - | chr8_3:53689299-53689318 | Msa1295540:intron | 40.0% |
| CGTTCATAAGTATTCAGTGG+CGG | + | chr8_3:53689571-53689590 | None:intergenic | 40.0% | |
| !! | GGGTAATGGAGTTAGGTTTA+TGG | + | chr8_3:53689694-53689713 | None:intergenic | 40.0% |
| !! | CTGTATTGGGTAATGGAGTT+AGG | + | chr8_3:53689701-53689720 | None:intergenic | 40.0% |
| ACTCCATTACCCAATACAGA+TGG | - | chr8_3:53689702-53689721 | Msa1295540:intron | 40.0% | |
| ACAGCCAATTATTTGCCACA+GGG | + | chr8_3:53689920-53689939 | None:intergenic | 40.0% | |
| !!! | GGAACTTTTTTGCATGTAGG+CGG | - | chr8_3:53690246-53690265 | Msa1295540:intron | 40.0% |
| TGTAGGCGGAAAAGAAGAAA+AGG | - | chr8_3:53690260-53690279 | Msa1295540:intron | 40.0% | |
| TAAAATGGCTGCAGTTGCAA+GGG | - | chr8_3:53690336-53690355 | Msa1295540:intron | 40.0% | |
| ! | GTTAATGCCGGTCAAGTTTT+TGG | - | chr8_3:53690456-53690475 | Msa1295540:intron | 40.0% |
| AATTGGCCCAAAAACTTGAC+CGG | + | chr8_3:53690466-53690485 | None:intergenic | 40.0% | |
| TGTTCTACTTTACTCTGGAC+GGG | - | chr8_3:53690616-53690635 | Msa1295540:five_prime_UTR | 40.0% | |
| GTTGCGTGCTTTCGTGTTAA+TGG | + | chr8_3:53687191-53687210 | None:intergenic | 45.0% | |
| CTTCGCATATTTCATAGCCC+GGG | + | chr8_3:53687438-53687457 | None:intergenic | 45.0% | |
| TGCTTTCTGCCACTGTCTAA+TGG | - | chr8_3:53687556-53687575 | Msa1295540:intron | 45.0% | |
| AGAATGAAACGGCAATGTGG+AGG | + | chr8_3:53688236-53688255 | None:intergenic | 45.0% | |
| AGTGGCTCAAAAAGGGAAGA+AGG | + | chr8_3:53688297-53688316 | None:intergenic | 45.0% | |
| GCTGTGAAAGTGGCTCAAAA+AGG | + | chr8_3:53688305-53688324 | None:intergenic | 45.0% | |
| TGTCTGTCAAGCTGTGAAAG+TGG | + | chr8_3:53688315-53688334 | None:intergenic | 45.0% | |
| TTTCGACGGGGTTTATCAGA+AGG | + | chr8_3:53688358-53688377 | None:intergenic | 45.0% | |
| GTGTGTTCAACCCAAGCATA+AGG | + | chr8_3:53688487-53688506 | None:intergenic | 45.0% | |
| GCTCCCTTGATTAGGCTTAT+TGG | + | chr8_3:53688530-53688549 | None:intergenic | 45.0% | |
| CTCTTGATGCTCCCTTGATT+AGG | + | chr8_3:53688538-53688557 | None:intergenic | 45.0% | |
| !! | CTAATCAAGGGAGCATCAAG+AGG | - | chr8_3:53688536-53688555 | Msa1295540:intron | 45.0% |
| GGAATGAGAAGAAACGCATG+AGG | - | chr8_3:53688560-53688579 | Msa1295540:intron | 45.0% | |
| ! | GGTGCTTGAGTTTGGAACAA+AGG | - | chr8_3:53688779-53688798 | Msa1295540:intron | 45.0% |
| !! | AACAAAGGTGTTGTCTGGAG+TGG | - | chr8_3:53688794-53688813 | Msa1295540:intron | 45.0% |
| GGATCTTAGTTGAGACCCAT+GGG | - | chr8_3:53689221-53689240 | Msa1295540:CDS | 45.0% | |
| GGACCATCTGTATTGGGTAA+TGG | + | chr8_3:53689708-53689727 | None:intergenic | 45.0% | |
| CAGTAATACGGACCACATAC+TGG | + | chr8_3:53689895-53689914 | None:intergenic | 45.0% | |
| AGCCAATTATTTGCCACAGG+GGG | + | chr8_3:53689918-53689937 | None:intergenic | 45.0% | |
| CAGCCAATTATTTGCCACAG+GGG | + | chr8_3:53689919-53689938 | None:intergenic | 45.0% | |
| GACAGCCAATTATTTGCCAC+AGG | + | chr8_3:53689921-53689940 | None:intergenic | 45.0% | |
| TACAACTTCACAATGCGCTG+AGG | - | chr8_3:53689959-53689978 | Msa1295540:intron | 45.0% | |
| GCGCTGAGGCTAAATTGATT+TGG | - | chr8_3:53689973-53689992 | Msa1295540:intron | 45.0% | |
| AGCAGCAGCTGACAGATAAA+TGG | + | chr8_3:53690005-53690024 | None:intergenic | 45.0% | |
| AAGGAAAGCTCAGATGCAAG+AGG | - | chr8_3:53690279-53690298 | Msa1295540:intron | 45.0% | |
| GCGGAAGAAGAACGTTAAGA+AGG | - | chr8_3:53690306-53690325 | Msa1295540:intron | 45.0% | |
| GTAAAATGGCTGCAGTTGCA+AGG | - | chr8_3:53690335-53690354 | Msa1295540:intron | 45.0% | |
| AGTTGCAAGGGAAAGAGAGT+GGG | - | chr8_3:53690348-53690367 | Msa1295540:intron | 45.0% | |
| !! | TTAATGGGCTGAGAGAGGAG+AGG | + | chr8_3:53687175-53687194 | None:intergenic | 50.0% |
| !! | TCGTGTTAATGGGCTGAGAG+AGG | + | chr8_3:53687180-53687199 | None:intergenic | 50.0% |
| ! | CACGCAACCCATCAGTTTTC+AGG | - | chr8_3:53687203-53687222 | Msa1295540:three_prime_UTR | 50.0% |
| CGTCCCTAGACATGTTCACT+TGG | + | chr8_3:53687495-53687514 | None:intergenic | 50.0% | |
| ! | GAGCTTAAGGTTAACGGACC+TGG | + | chr8_3:53687847-53687866 | None:intergenic | 50.0% |
| AGATTCGGAAGAGGAGTCCT+CGG | - | chr8_3:53688148-53688167 | Msa1295540:intron | 50.0% | |
| ACGACGAGAGTGAGATCAGA+GGG | + | chr8_3:53688186-53688205 | None:intergenic | 50.0% | |
| TGATCTCACTCTCGTCGTCA+AGG | - | chr8_3:53688188-53688207 | Msa1295540:intron | 50.0% | |
| AAGGGAAGAAGGAATTGGGG+TGG | + | chr8_3:53688286-53688305 | None:intergenic | 50.0% | |
| CTGATAAACCCCGTCGAAAG+CGG | - | chr8_3:53688359-53688378 | Msa1295540:intron | 50.0% | |
| TGATAAACCCCGTCGAAAGC+GGG | - | chr8_3:53688360-53688379 | Msa1295540:intron | 50.0% | |
| !! | GCTTGGGTTGAACACACAAC+TGG | - | chr8_3:53688490-53688509 | Msa1295540:intron | 50.0% |
| !! | ATCAAGGGAGCATCAAGAGG+AGG | - | chr8_3:53688539-53688558 | Msa1295540:intron | 50.0% |
| CGGATCTTAGTTGAGACCCA+TGG | - | chr8_3:53689220-53689239 | Msa1295540:CDS | 50.0% | |
| TGCCCCCTGTGGCAAATAAT+TGG | - | chr8_3:53689913-53689932 | Msa1295540:intron | 50.0% | |
| CTCAGATGCAAGAGGCTAAG+CGG | - | chr8_3:53690287-53690306 | Msa1295540:intron | 50.0% | |
| CAGTTGCAAGGGAAAGAGAG+TGG | - | chr8_3:53690347-53690366 | Msa1295540:intron | 50.0% | |
| AAGAGAGTGGGCAGAAAGAC+TGG | - | chr8_3:53690360-53690379 | Msa1295540:intron | 50.0% | |
| ATGCAAGCTCACCGTGCATA+TGG | + | chr8_3:53690687-53690706 | None:intergenic | 50.0% | |
| ! | AGGTTAACGGACCTGGACGA+AGG | + | chr8_3:53687840-53687859 | None:intergenic | 55.0% |
| GATTCGGAAGAGGAGTCCTC+GGG | - | chr8_3:53688149-53688168 | Msa1295540:intron | 55.0% | |
| ! | GAGGGCGTAAAACATTCCCG+AGG | + | chr8_3:53688168-53688187 | None:intergenic | 55.0% |
| GACGACGAGAGTGAGATCAG+AGG | + | chr8_3:53688187-53688206 | None:intergenic | 55.0% | |
| CTCACTCTCGTCGTCAAGGA+CGG | - | chr8_3:53688192-53688211 | Msa1295540:intron | 55.0% | |
| !! | GAATTGGGGTGGTTTGCTGC+CGG | + | chr8_3:53688275-53688294 | None:intergenic | 55.0% |
| TCAAGCTAGCCCGCTTTCGA+CGG | + | chr8_3:53688372-53688391 | None:intergenic | 55.0% | |
| AAGCAACGCAACGCACCAGA+GGG | + | chr8_3:53688397-53688416 | None:intergenic | 55.0% | |
| ! | TCGTCCAGGGCCTTATGCTT+GGG | - | chr8_3:53688474-53688493 | Msa1295540:intron | 55.0% |
| TCAACCCAAGCATAAGGCCC+TGG | + | chr8_3:53688481-53688500 | None:intergenic | 55.0% | |
| TGAAAACCCAGGGGATGCCA+TGG | + | chr8_3:53689249-53689268 | None:intergenic | 55.0% | |
| GATTCGAACCTGCACCCACT+TGG | - | chr8_3:53689433-53689452 | Msa1295540:CDS | 55.0% | |
| !! | TGAAAGCACCAAGTGGGTGC+AGG | + | chr8_3:53689444-53689463 | None:intergenic | 55.0% |
| TGCCACAGGGGGCAGTAATA+CGG | + | chr8_3:53689907-53689926 | None:intergenic | 55.0% | |
| GGTTGAATTGCAGCGCCTTG+AGG | - | chr8_3:53690381-53690400 | Msa1295540:intron | 55.0% | |
| TCACAGCAACACGGACCCAG+CGG | - | chr8_3:53687114-53687133 | Msa1295540:three_prime_UTR | 60.0% | |
| !! | AGCGACGGTTGGTTGGTGGT+GGG | + | chr8_3:53687150-53687169 | None:intergenic | 60.0% |
| AGAGGAGAGCGACGGTTGGT+TGG | + | chr8_3:53687157-53687176 | None:intergenic | 60.0% | |
| GAGAGAGGAGAGGAGAGCGA+CGG | + | chr8_3:53687165-53687184 | None:intergenic | 60.0% | |
| !! | GGTGGTTTGCTGCCGGAAGA+TGG | + | chr8_3:53688268-53688287 | None:intergenic | 60.0% |
| AAGCTAGCCCGCTTTCGACG+GGG | + | chr8_3:53688370-53688389 | None:intergenic | 60.0% | |
| CAAGCTAGCCCGCTTTCGAC+GGG | + | chr8_3:53688371-53688390 | None:intergenic | 60.0% | |
| GAAGCAACGCAACGCACCAG+AGG | + | chr8_3:53688398-53688417 | None:intergenic | 60.0% | |
| ! | GTCGTCCAGGGCCTTATGCT+TGG | - | chr8_3:53688473-53688492 | Msa1295540:intron | 60.0% |
| GCAGCGCCGTGCCTTTATAC+TGG | - | chr8_3:53688582-53688601 | Msa1295540:intron | 60.0% | |
| GTTGAGACCCATGGGTGCCA+TGG | - | chr8_3:53689229-53689248 | Msa1295540:CDS | 60.0% | |
| ! | TAGCCTTACAGTCCCCCCAG+TGG | - | chr8_3:53689327-53689346 | Msa1295540:intron | 60.0% |
| TGTCGAACTCGCGACCACTG+GGG | + | chr8_3:53689344-53689363 | None:intergenic | 60.0% | |
| GTGTCGAACTCGCGACCACT+GGG | + | chr8_3:53689345-53689364 | None:intergenic | 60.0% | |
| ! | AGTGTCGAACTCGCGACCAC+TGG | + | chr8_3:53689346-53689365 | None:intergenic | 60.0% |
| GTCCGTATTACTGCCCCCTG+TGG | - | chr8_3:53689902-53689921 | Msa1295540:intron | 60.0% | |
| !! | GGTTGGTTGGTGGTGGGTGG+CGG | + | chr8_3:53687144-53687163 | None:intergenic | 65.0% |
| !! | GACGGTTGGTTGGTGGTGGG+TGG | + | chr8_3:53687147-53687166 | None:intergenic | 65.0% |
| !! | GAGCGACGGTTGGTTGGTGG+TGG | + | chr8_3:53687151-53687170 | None:intergenic | 65.0% |
| ! | GGAGAGCGACGGTTGGTTGG+TGG | + | chr8_3:53687154-53687173 | None:intergenic | 65.0% |
| GAGGAGAGGAGAGCGACGGT+TGG | + | chr8_3:53687161-53687180 | None:intergenic | 65.0% | |
| !! | CGGGCTAGCTTGAGACCCTC+TGG | - | chr8_3:53688379-53688398 | Msa1295540:intron | 65.0% |
| GGGGATGCCATGGCACCCAT+GGG | + | chr8_3:53689239-53689258 | None:intergenic | 65.0% | |
| AGGGGATGCCATGGCACCCA+TGG | + | chr8_3:53689240-53689259 | None:intergenic | 65.0% | |
| ! | ATGGGTGCCATGGCATCCCC+TGG | - | chr8_3:53689239-53689258 | Msa1295540:CDS | 65.0% |
| ! | TGGGTGCCATGGCATCCCCT+GGG | - | chr8_3:53689240-53689259 | Msa1295540:CDS | 65.0% |
| CGACCACTGGGGGGACTGTA+AGG | + | chr8_3:53689333-53689352 | None:intergenic | 65.0% | |
| TCGAACTCGCGACCACTGGG+GGG | + | chr8_3:53689342-53689361 | None:intergenic | 65.0% | |
| GTCGAACTCGCGACCACTGG+GGG | + | chr8_3:53689343-53689362 | None:intergenic | 65.0% | |
| !! | GGTTGGTGGTGGGTGGCGGT+GGG | + | chr8_3:53687140-53687159 | None:intergenic | 70.0% |
| !! | TGGTTGGTGGTGGGTGGCGG+TGG | + | chr8_3:53687141-53687160 | None:intergenic | 70.0% |
| !! | GTGGGTGGCGGTGGGCCGCT+GGG | + | chr8_3:53687132-53687151 | None:intergenic | 80.0% |
| !! | GGTGGGTGGCGGTGGGCCGC+TGG | + | chr8_3:53687133-53687152 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 53687062 | 53690711 | 53687062 | ID=Msa1295540;Name=Msa1295540 |
| chr8_3 | mRNA | 53687062 | 53690711 | 53687062 | ID=Msa1295540-mRNA-1;Parent=Msa1295540;Name=Msa1295540-mRNA-1;_AED=0.04;_eAED=0.04;_QI=178|1|1|1|0.66|0.5|4|282|180 |
| chr8_3 | exon | 53687062 | 53687508 | 53687062 | ID=Msa1295540-mRNA-1:exon:15459;Parent=Msa1295540-mRNA-1 |
| chr8_3 | exon | 53689170 | 53689291 | 53689170 | ID=Msa1295540-mRNA-1:exon:15458;Parent=Msa1295540-mRNA-1 |
| chr8_3 | exon | 53689373 | 53689643 | 53689373 | ID=Msa1295540-mRNA-1:exon:15457;Parent=Msa1295540-mRNA-1 |
| chr8_3 | exon | 53690549 | 53690711 | 53690549 | ID=Msa1295540-mRNA-1:exon:15456;Parent=Msa1295540-mRNA-1 |
| chr8_3 | five_prime_UTR | 53690549 | 53690711 | 53690549 | ID=Msa1295540-mRNA-1:five_prime_utr;Parent=Msa1295540-mRNA-1 |
| chr8_3 | five_prime_UTR | 53689629 | 53689643 | 53689629 | ID=Msa1295540-mRNA-1:five_prime_utr;Parent=Msa1295540-mRNA-1 |
| chr8_3 | CDS | 53689373 | 53689628 | 53689373 | ID=Msa1295540-mRNA-1:cds;Parent=Msa1295540-mRNA-1 |
| chr8_3 | CDS | 53689170 | 53689291 | 53689170 | ID=Msa1295540-mRNA-1:cds;Parent=Msa1295540-mRNA-1 |
| chr8_3 | CDS | 53687344 | 53687508 | 53687344 | ID=Msa1295540-mRNA-1:cds;Parent=Msa1295540-mRNA-1 |
| chr8_3 | three_prime_UTR | 53687062 | 53687343 | 53687062 | ID=Msa1295540-mRNA-1:three_prime_utr;Parent=Msa1295540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
