AlfalfaGEDB | Msa1257760

M. sativa cultivar zhongmu-4 / Msa1257760

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009987 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043565 GO:0044087 GO:0044089 GO:0048518 GO:0048522 GO:0048759 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901348 GO:1901363 GO:1903338 GO:1903340 GO:1903506 GO:1905177 GO:2000112 GO:2000652 GO:2001141
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1257760	XP_003608762.1	95.935	369	9	2	1	368	1	364	0.0	740

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1257760	sp\|Q9FWX2\|NAC7_ARATH	55.097	412	124	10	1	368	1	395	2.00e-144	417

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1257760	G7JK47	95.935	369	9	2	1	368	1	364	0.0	740

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TFs/TRs:

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Gene ID	Type	Classification
Msa1257760	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0228680	Msa1257760	0.801686	8.009237e-49	-8.615850e-47
Msa1257740	Msa1257760	0.901385	2.827753e-78	-8.615850e-47
Msa1257760	Msa1257830	0.907353	5.556799e-81	-8.615850e-47
Msa1257760	Msa1329140	0.920771	8.383354e-88	-8.615850e-47
Msa1257760	Msa1329190	0.908122	2.413460e-81	-8.615850e-47
Msa1257760	Msa1329220	0.934250	5.397370e-96	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1257760	MtrunA17_Chr4g0056541	95.935	369	9	2	1	368	1	364	0.0	740
Msa1257760	MtrunA17_Chr4g0018391	65.549	328	85	10	1	312	1	316	1.46e-145	416
Msa1257760	MtrunA17_Chr5g0398971	60.471	382	104	16	1	368	1	349	2.22e-144	412
Msa1257760	MtrunA17_Chr5g0405211	55.128	312	108	8	5	307	6	294	1.26e-105	314
Msa1257760	MtrunA17_Chr8g0372121	52.229	314	106	4	5	316	4	275	1.90e-103	307
Msa1257760	MtrunA17_Chr1g0200561	75.641	156	38	0	1	156	13	168	1.26e-87	268
Msa1257760	MtrunA17_Chr8g0346001	48.204	334	144	8	1	307	9	340	5.82e-87	269
Msa1257760	MtrunA17_Chr2g0309331	46.061	330	142	6	7	324	10	315	6.36e-84	258
Msa1257760	MtrunA17_Chr4g0017921	75.497	151	36	1	7	157	8	157	4.60e-81	251
Msa1257760	MtrunA17_Chr2g0309891	54.217	166	72	2	7	169	6	170	2.29e-62	203

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1257760	AT1G12260.1	55.097	412	124	10	1	368	1	395	2.03e-145	417
Msa1257760	AT1G12260.2	56.032	373	128	10	1	368	1	342	5.84e-137	394
Msa1257760	AT1G62700.1	52.580	407	139	13	1	366	1	394	4.07e-129	376
Msa1257760	AT1G62700.2	52.580	407	139	13	1	366	1	394	4.07e-129	376
Msa1257760	AT4G36160.2	49.051	369	139	9	7	348	14	360	4.27e-108	322
Msa1257760	AT4G36160.1	49.051	369	139	9	7	348	10	356	9.16e-108	321
Msa1257760	AT4G36160.3	49.051	369	139	9	7	348	10	356	9.16e-108	321
Msa1257760	AT2G18060.3	52.484	322	121	7	7	314	9	312	8.54e-107	318
Msa1257760	AT2G18060.1	52.484	322	121	7	7	314	9	312	8.54e-107	318
Msa1257760	AT5G62380.2	46.761	355	151	6	1	342	1	330	1.44e-101	304

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Find 115 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATAAGAAGTATCCAAC+AGG	0.484211	8_2:+58608224	Msa1257760:CDS
AACAGACAGGAAATGAAAAG+TGG	0.540578	8_2:-58606495	None:intergenic
AACTAGCATCATGGTATTGG+TGG	0.481901	8_2:-58611465	None:intergenic
AACTTGTTGATTACTACCTC+AGG	0.500136	8_2:+58607813	Msa1257760:CDS
AAGAAAGGCAGAAAGACACA+AGG	0.658318	8_2:-58606524	None:intergenic
AAGAAGGATGGGTTGTATGC+AGG	0.452985	8_2:+58611251	Msa1257760:CDS
AAGAGAAAAGATGATTTATT+AGG	0.185077	8_2:+58606272	Msa1257760:five_prime_UTR
AAGCTTATCTCATGAAATGG+TGG	0.636207	8_2:-58606193	None:intergenic
AAGTTAAATTGTTGTATCCT+CGG	0.452739	8_2:-58606471	None:intergenic
AATAACCTTGATATTAAGTG+TGG	0.576631	8_2:-58606726	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAAAGCTTATCTCATGAAA+TGG	-	chr8_2:58606199-58606218	None:intergenic	30.0%
AGTTAAATTGTTGTATCCTC+GGG	-	chr8_2:58606473-58606492	None:intergenic	30.0%
AAAAAAGCAGCACTAAAGAA+AGG	-	chr8_2:58606542-58606561	None:intergenic	30.0%
TTACCATGCTTATATATCTG+AGG	+	chr8_2:58606639-58606658	Msa1257760:five_prime_UTR	30.0%
AATCCTCAGATATATAAGCA+TGG	-	chr8_2:58606645-58606664	None:intergenic	30.0%
ACAGTAAAGAAGAGAAACTA+AGG	-	chr8_2:58606827-58606846	None:intergenic	30.0%
TTAATGATCATCCACAATTC+TGG	-	chr8_2:58606892-58606911	None:intergenic	30.0%
CCAAAACTAAAGACAACTAA+AGG	+	chr8_2:58606959-58606978	Msa1257760:intron	30.0%
ACAAGACTTTGATCTATGTT+CGG	+	chr8_2:58607053-58607072	Msa1257760:intron	30.0%
TTTACAATGTAATTATGGGG+AGG	-	chr8_2:58607371-58607390	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	58606148	58612188	58606148	ID=Msa1257760;Name=Msa1257760
chr8_2	mRNA	58606148	58612188	58606148	ID=Msa1257760-mRNA-1;Parent=Msa1257760;Name=Msa1257760-mRNA-1;_AED=0.06;_eAED=0.06;_QI=619\|1\|1\|1\|0.66\|0.5\|4\|264\|368
chr8_2	exon	58606148	58606742	58606148	ID=Msa1257760-mRNA-1:exon:18156;Parent=Msa1257760-mRNA-1
chr8_2	exon	58607734	58607917	58607734	ID=Msa1257760-mRNA-1:exon:18157;Parent=Msa1257760-mRNA-1
chr8_2	exon	58608171	58608442	58608171	ID=Msa1257760-mRNA-1:exon:18158;Parent=Msa1257760-mRNA-1
chr8_2	exon	58611250	58612188	58611250	ID=Msa1257760-mRNA-1:exon:18159;Parent=Msa1257760-mRNA-1
chr8_2	five_prime_UTR	58606148	58606742	58606148	ID=Msa1257760-mRNA-1:five_prime_utr;Parent=Msa1257760-mRNA-1
chr8_2	five_prime_UTR	58607734	58607757	58607734	ID=Msa1257760-mRNA-1:five_prime_utr;Parent=Msa1257760-mRNA-1
chr8_2	CDS	58607758	58607917	58607758	ID=Msa1257760-mRNA-1:cds;Parent=Msa1257760-mRNA-1
chr8_2	CDS	58608171	58608442	58608171	ID=Msa1257760-mRNA-1:cds;Parent=Msa1257760-mRNA-1
chr8_2	CDS	58611250	58611924	58611250	ID=Msa1257760-mRNA-1:cds;Parent=Msa1257760-mRNA-1
chr8_2	three_prime_UTR	58611925	58612188	58611925	ID=Msa1257760-mRNA-1:three_prime_utr;Parent=Msa1257760-mRNA-1

Gene Sequence

>Msa1257760

ATGAATACATTTTCACATGTACCTCCAGGCTTTCGTTTTCATCCAACTGATGAAGAACTTGTTGATTACTACCTCAGGAAGAAGGTATCGTCTAAAAAGATTGATCTCGATGTCATCAAAGACGTTGATCTCTATAAAATTGAACCATGGGATCTTCAAGAATTATGCAAAATAGGAAGTGATGAACAAAATGACTGGTATTTCTTTAGTCATAAAGATAAGAAGTATCCAACAGGAACTAGAACGAATAGAGCAACAAAAGCAGGATTCTGGAAAGCCACAGGAAGAGACAAAGCAATATACTCAAAACAATTTCTGGTTGGGATGAGAAAGACTCTAGTATTTTACAAAGGACGTGCCCCAAATGGACAGAAATCTGATTGGATCATGCATGAGTATCGTCTTGAAACTAATCAAAATGGAATTTCTCAGGAAGAAGGATGGGTTGTATGCAGGGTATTCAAGAAAAGAATGACAACAGTGCAGAAAATGAATGAATATGATCAATCACCATGTAACTGGTATGATGATCAAGTTTCCTTCATGCCAGATCTTGAATCCCCAACCCGAACCAATTCTCACCCTCCTAACTATACTTCATACCACTCATGCAAACCAGAACTAGAATTAATGCAATATAACACACCCCACCAATACCATGATGCTAGTTTTCTCCAACTTCCACACCTTGAAAGCCCAAAAATTACTCAATCTATTATCCCTTATAATCATCATGCTCATGCAAACAATAACAATATTGCACTTACTCAACATCAGCAACAACAACAGATGCAATATTTTCAGTACCATCAACAAAATCTTCACTCACTTTATGGTGGTAACAGCAGTAATGGCAATGATGAACAAGTTACTGATTGGAGAGTGCTTGACAAGTTTGTTGCTTCTCAGCTAAGTCATGAAGAAAATAATAATAATAATAATCAAGATCATGTTTCTAATAAAGAAGCTAGTTCTTTCTCCAATGCAGCTATTCTTCATGTGGCTGAACAGATTACTCTTCTTGCTAATGAATCCAAAAAGAATGATGTTTCTGAGGAACATGCTTCAACTTCTACCTCCAGTTGCCACATGGAACTCTGGAAGTGA

Protein sequence

>Msa1257760

MNTFSHVPPGFRFHPTDEELVDYYLRKKVSSKKIDLDVIKDVDLYKIEPWDLQELCKIGSDEQNDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYSKQFLVGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNQNGISQEEGWVVCRVFKKRMTTVQKMNEYDQSPCNWYDDQVSFMPDLESPTRTNSHPPNYTSYHSCKPELELMQYNTPHQYHDASFLQLPHLESPKITQSIIPYNHHAHANNNNIALTQHQQQQQMQYFQYHQQNLHSLYGGNSSNGNDEQVTDWRVLDKFVASQLSHEENNNNNNQDHVSNKEASSFSNAAILHVAEQITLLANESKKNDVSEEHASTSTSSCHMELWK*