Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1258520 | XP_003608844.1 | 99.111 | 225 | 2 | 0 | 1 | 225 | 530 | 754 | 3.93e-156 | 461 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1258520 | sp|F4JRR1|COG2_ARATH | 62.054 | 224 | 84 | 1 | 1 | 223 | 531 | 754 | 7.92e-96 | 298 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1258520 | G7JLF2 | 99.111 | 225 | 2 | 0 | 1 | 225 | 530 | 754 | 1.88e-156 | 461 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0228490 | Msa1258520 | 0.813903 | 2.022518e-51 | -8.615850e-47 |
| Msa1258520 | Msa1258630 | 0.801319 | 9.521858e-49 | -8.615850e-47 |
| Msa1258520 | Msa1400970 | 0.823724 | 1.187366e-53 | -8.615850e-47 |
| Msa1258520 | Msa1442980 | 0.831147 | 1.968120e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1258520 | MtrunA17_Chr4g0057621 | 99.111 | 225 | 2 | 0 | 1 | 225 | 530 | 754 | 3.62e-160 | 461 |
| Msa1258520 | MtrunA17_Chr3g0136241 | 85.417 | 144 | 21 | 0 | 20 | 163 | 1 | 144 | 2.54e-82 | 242 |
| Msa1258520 | MtrunA17_Chr3g0136231 | 84.444 | 45 | 7 | 0 | 179 | 223 | 1 | 45 | 9.54e-22 | 84.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1258520 | AT4G24840.1 | 62.054 | 224 | 84 | 1 | 1 | 223 | 531 | 754 | 8.05e-97 | 298 |
Find 56 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGTTCTTCCTTGATATTC+AGG | 0.239412 | 8_2:-59714551 | Msa1258520:intron |
| CCTAACAGGTAGAGGCTTAT+TGG | 0.279715 | 8_2:+59716691 | None:intergenic |
| TCGATATCACATACCTTTAG+AGG | 0.285448 | 8_2:+59716638 | None:intergenic |
| TTTGTGTATTATAGATTTCA+TGG | 0.296490 | 8_2:+59714197 | None:intergenic |
| TTGCATCCTATCGTTCATTA+TGG | 0.313107 | 8_2:-59714347 | Msa1258520:CDS |
| TGGGGAAAGAATCTCGTATT+TGG | 0.319163 | 8_2:-59714873 | Msa1258520:CDS |
| CCCCTAGCGCAGAGAGATTA+CGG | 0.344115 | 8_2:+59714385 | None:intergenic |
| CTTACTGATTCAAGGACATC+TGG | 0.364506 | 8_2:+59717008 | None:intergenic |
| AGACGAGCAGGGACAAGTTC+TGG | 0.377622 | 8_2:-59714616 | Msa1258520:CDS |
| TGATTGATTGCTTTCTTGCT+TGG | 0.378699 | 8_2:-59714244 | Msa1258520:three_prime_UTR |
| TAAAGGTTCTAAAGATTTCA+AGG | 0.396291 | 8_2:+59716959 | None:intergenic |
| TGCTCTGCCTTACTGATTCA+AGG | 0.414153 | 8_2:+59717000 | None:intergenic |
| ACATATGGTGAGTGCCTAAC+AGG | 0.419399 | 8_2:+59716677 | None:intergenic |
| AGGGGATAACAGCAACTTAC+AGG | 0.428355 | 8_2:-59716718 | Msa1258520:CDS |
| AGTGTCAGACACATTATTAT+CGG | 0.433834 | 8_2:+59714588 | None:intergenic |
| CCAATAAGCCTCTACCTGTT+AGG | 0.434691 | 8_2:-59716691 | Msa1258520:CDS |
| CGTAATACTCCCGCAACATA+TGG | 0.437801 | 8_2:+59716662 | None:intergenic |
| CAAAGCAGTGGTGGAGTCAC+TGG | 0.456978 | 8_2:-59716931 | Msa1258520:CDS |
| TCTATAATACACAAATTAGT+TGG | 0.463359 | 8_2:-59714189 | Msa1258520:three_prime_UTR |
| CCCGTAATCTCTCTGCGCTA+GGG | 0.463689 | 8_2:-59714386 | Msa1258520:CDS |
| ACCACTGCTTTGATGACTAA+AGG | 0.473079 | 8_2:+59716942 | None:intergenic |
| TTTGCACGTGTGGAGTCAAC+GGG | 0.473469 | 8_2:-59714276 | Msa1258520:three_prime_UTR |
| AGGCACTCACCATATGTTGC+GGG | 0.475407 | 8_2:-59716671 | Msa1258520:CDS |
| CCCTAGCGCAGAGAGATTAC+GGG | 0.489238 | 8_2:+59714386 | None:intergenic |
| TGTTTGGAGGCGCACGTTCG+TGG | 0.498439 | 8_2:-59717074 | Msa1258520:CDS |
| CAGAGTGCACAGAGACGAGC+AGG | 0.501222 | 8_2:-59714628 | Msa1258520:CDS |
| AACCTGTGATTATTGTGTAA+AGG | 0.505423 | 8_2:+59714166 | None:intergenic |
| CTAGGACTTGAGACAGATGA+AGG | 0.507871 | 8_2:-59716738 | Msa1258520:intron |
| GCCCGTAATCTCTCTGCGCT+AGG | 0.511320 | 8_2:-59714387 | Msa1258520:CDS |
| TCATGATATAAGATGTTTGG+AGG | 0.514413 | 8_2:-59717087 | Msa1258520:CDS |
| ATGTTGTTCTGCCTATCTGC+TGG | 0.527559 | 8_2:+59714312 | None:intergenic |
| CAGATGTCCTTGAATCAGTA+AGG | 0.528406 | 8_2:-59717007 | Msa1258520:CDS |
| GGGAGTATTACGTCCTCTAA+AGG | 0.549333 | 8_2:-59716651 | Msa1258520:intron |
| GTTTGCACGTGTGGAGTCAA+CGG | 0.550583 | 8_2:-59714277 | Msa1258520:three_prime_UTR |
| AGCTGCCGACCTTGTTACTA+CGG | 0.551500 | 8_2:-59714783 | Msa1258520:intron |
| TTACTGATTCAAGGACATCT+GGG | 0.552406 | 8_2:+59717009 | None:intergenic |
| TCATGCCTACCTGAATATCA+AGG | 0.561958 | 8_2:+59714542 | None:intergenic |
| TTGGTTGTGAGTAGTCAAGA+AGG | 0.562668 | 8_2:-59714678 | Msa1258520:intron |
| CGGCAGCTAATTCATAATAA+CGG | 0.574795 | 8_2:+59714798 | None:intergenic |
| GGTGAGTGCCTAACAGGTAG+AGG | 0.576101 | 8_2:+59716683 | None:intergenic |
| AGTGTGTGGCTCCAGCAGAT+AGG | 0.580457 | 8_2:-59714323 | Msa1258520:CDS |
| TAGGACTTGAGACAGATGAA+GGG | 0.594345 | 8_2:-59716737 | Msa1258520:CDS |
| CCGTAATCTCTCTGCGCTAG+GGG | 0.606581 | 8_2:-59714385 | Msa1258520:CDS |
| GGATTCTTACCGTAGTAACA+AGG | 0.608299 | 8_2:+59714774 | None:intergenic |
| TAGGCACTCACCATATGTTG+CGG | 0.611203 | 8_2:-59716672 | Msa1258520:CDS |
| ACACTGCCATAATGAACGAT+AGG | 0.612354 | 8_2:+59714341 | None:intergenic |
| ACCTTTAGTCATCAAAGCAG+TGG | 0.619868 | 8_2:-59716943 | Msa1258520:CDS |
| AGCAGTGGTGGAGTCACTGG+TGG | 0.621318 | 8_2:-59716928 | Msa1258520:CDS |
| AGGACTTGAGACAGATGAAG+GGG | 0.628043 | 8_2:-59716736 | Msa1258520:CDS |
| TCGTTCATTATGGCAGTGTG+TGG | 0.633355 | 8_2:-59714337 | Msa1258520:CDS |
| AGAGTGCACAGAGACGAGCA+GGG | 0.639547 | 8_2:-59714627 | Msa1258520:CDS |
| TAATGTCAGTTGCTGCACAA+AGG | 0.646127 | 8_2:+59714825 | None:intergenic |
| TGGTGATTACTTACAACACG+TGG | 0.655831 | 8_2:-59717054 | Msa1258520:CDS |
| TTTAGTCATCAAAGCAGTGG+TGG | 0.660509 | 8_2:-59716940 | Msa1258520:CDS |
| TACTGATTCAAGGACATCTG+GGG | 0.668471 | 8_2:+59717010 | None:intergenic |
| TCTTACCGTAGTAACAAGGT+CGG | 0.694276 | 8_2:+59714778 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTTATTACTAATATAG+GGG | + | chr8_2:59714905-59714924 | None:intergenic | 10.0% |
| !! | GTTGTTTAATTATAAAAATT+TGG | + | chr8_2:59715940-59715959 | None:intergenic | 10.0% |
| !! | ACAATGAATATTCATTAAAT+TGG | - | chr8_2:59714393-59714412 | Msa1258520:CDS | 15.0% |
| !! | AAATTTATTACTAATATAGG+GGG | + | chr8_2:59714904-59714923 | None:intergenic | 15.0% |
| !!! | TTTTTAATCTTTAAAGAAAG+AGG | - | chr8_2:59715129-59715148 | Msa1258520:intron | 15.0% |
| !!! | AAATGCTTTTTGTTAAATTT+TGG | - | chr8_2:59715404-59715423 | Msa1258520:intron | 15.0% |
| !!! | TTTTTTCTTAGAAAAAAGAT+CGG | - | chr8_2:59715623-59715642 | Msa1258520:intron | 15.0% |
| !!! | TTAATGAAATTTTTATCTCT+TGG | - | chr8_2:59716544-59716563 | Msa1258520:intron | 15.0% |
| !! | AAAAATTCATTTCAAAATCA+TGG | + | chr8_2:59716786-59716805 | None:intergenic | 15.0% |
| !! | TATTCATGATATAAGATGTT+TGG | - | chr8_2:59714180-59714199 | Msa1258520:three_prime_UTR | 20.0% |
| !!! | AAAATATGAATAAGTTGGAA+GGG | + | chr8_2:59714495-59714514 | None:intergenic | 20.0% |
| !!! | AAAAATATGAATAAGTTGGA+AGG | + | chr8_2:59714496-59714515 | None:intergenic | 20.0% |
| !! | AAGCAAAAATATGAATAAGT+TGG | + | chr8_2:59714500-59714519 | None:intergenic | 20.0% |
| !! | TTAAATACCCCAAATATAAA+AGG | - | chr8_2:59715186-59715205 | Msa1258520:intron | 20.0% |
| !!! | ATGCCAAAAATTGTTTTAAA+CGG | + | chr8_2:59715315-59715334 | None:intergenic | 20.0% |
| !!! | AATCATTTGTTGAATAACAA+TGG | - | chr8_2:59715534-59715553 | Msa1258520:intron | 20.0% |
| !!! | ATCATTTGTTGAATAACAAT+GGG | - | chr8_2:59715535-59715554 | Msa1258520:intron | 20.0% |
| !! | TTAAATACCGTAAAAAACTT+GGG | + | chr8_2:59715798-59715817 | None:intergenic | 20.0% |
| !!! | AATGATGATTCTTTCTTTTT+GGG | + | chr8_2:59716072-59716091 | None:intergenic | 20.0% |
| !! | ATGAAAAATGGAAAGATAAA+TGG | - | chr8_2:59716221-59716240 | Msa1258520:intron | 20.0% |
| !!! | TGATAATGCTTAAGAAATTT+TGG | - | chr8_2:59716573-59716592 | Msa1258520:intron | 20.0% |
| !! | TTTGTGTATTATAGATTTCA+TGG | + | chr8_2:59717076-59717095 | None:intergenic | 20.0% |
| !! | TCTATAATACACAAATTAGT+TGG | - | chr8_2:59717081-59717100 | Msa1258520:CDS | 20.0% |
| !!! | TAAAGGTTCTAAAGATTTCA+AGG | + | chr8_2:59714314-59714333 | None:intergenic | 25.0% |
| !! | TGTGATATCGATTAAGTTTA+TGG | - | chr8_2:59714644-59714663 | Msa1258520:CDS | 25.0% |
| !! | TAGAGAAAGCTTTAACATTT+AGG | - | chr8_2:59714781-59714800 | Msa1258520:intron | 25.0% |
| !! | TTCCTACTCCTTTTATATTT+GGG | + | chr8_2:59715197-59715216 | None:intergenic | 25.0% |
| !!! | ATGCCGTTTAAAACAATTTT+TGG | - | chr8_2:59715309-59715328 | Msa1258520:intron | 25.0% |
| !!! | TTCTTACTCCATTTTTCTTT+GGG | + | chr8_2:59715353-59715372 | None:intergenic | 25.0% |
| !!! | ATTCTTACTCCATTTTTCTT+TGG | + | chr8_2:59715354-59715373 | None:intergenic | 25.0% |
| ! | AAAATGGAGTAAGAATCTAA+AGG | - | chr8_2:59715358-59715377 | Msa1258520:intron | 25.0% |
| ! | AAATGGAGTAAGAATCTAAA+GGG | - | chr8_2:59715359-59715378 | Msa1258520:intron | 25.0% |
| !!! | TTAACAAAAAGCATTTGTGT+GGG | + | chr8_2:59715400-59715419 | None:intergenic | 25.0% |
| !!! | TTTAACAAAAAGCATTTGTG+TGG | + | chr8_2:59715401-59715420 | None:intergenic | 25.0% |
| !!! | TGCTTTTTGTTAAATTTTGG+TGG | - | chr8_2:59715407-59715426 | Msa1258520:intron | 25.0% |
| !!! | GCTTTTTGTTAAATTTTGGT+GGG | - | chr8_2:59715408-59715427 | Msa1258520:intron | 25.0% |
| !! | AGGCATTAAAATTTCACTTT+TGG | - | chr8_2:59715443-59715462 | Msa1258520:intron | 25.0% |
| !! | TGAATAACAATGGGTATTTT+TGG | - | chr8_2:59715544-59715563 | Msa1258520:intron | 25.0% |
| !!! | GGTATTTTTGGAATATAAAG+TGG | - | chr8_2:59715556-59715575 | Msa1258520:intron | 25.0% |
| ! | AATAACTACTTTGATGTACA+AGG | - | chr8_2:59715580-59715599 | Msa1258520:intron | 25.0% |
| ! | AAAATACAGTAGTCAGTTTA+TGG | + | chr8_2:59715753-59715772 | None:intergenic | 25.0% |
| ! | GTTAAATACCGTAAAAAACT+TGG | + | chr8_2:59715799-59715818 | None:intergenic | 25.0% |
| ! | GGTATTTAACAACTATTGTT+AGG | - | chr8_2:59715809-59715828 | Msa1258520:intron | 25.0% |
| ! | ATTTAACAACTATTGTTAGG+TGG | - | chr8_2:59715812-59715831 | Msa1258520:intron | 25.0% |
| ! | TTTAACAACTATTGTTAGGT+GGG | - | chr8_2:59715813-59715832 | Msa1258520:intron | 25.0% |
| ! | TGATTACTACATGTTCATTT+AGG | - | chr8_2:59715869-59715888 | Msa1258520:intron | 25.0% |
| ! | TACTCGTTATTATGATCTAT+TGG | - | chr8_2:59715975-59715994 | Msa1258520:intron | 25.0% |
| !! | CAATGATGATTCTTTCTTTT+TGG | + | chr8_2:59716073-59716092 | None:intergenic | 25.0% |
| ! | AAATTGAATCCAATCTGATA+TGG | - | chr8_2:59716142-59716161 | Msa1258520:intron | 25.0% |
| !!! | TTTGGTTTCCTATTTTAAGA+GGG | + | chr8_2:59716265-59716284 | None:intergenic | 25.0% |
| !!! | TTTTGGTTTCCTATTTTAAG+AGG | + | chr8_2:59716266-59716285 | None:intergenic | 25.0% |
| !!! | ATACACAACTCAACTTTTTT+GGG | + | chr8_2:59716307-59716326 | None:intergenic | 25.0% |
| !!! | AATACACAACTCAACTTTTT+TGG | + | chr8_2:59716308-59716327 | None:intergenic | 25.0% |
| ! | CATTAATGTAGTCTCTATAT+TGG | - | chr8_2:59716353-59716372 | Msa1258520:intron | 25.0% |
| !!! | ACAAAGGAGTATTTCATTTT+TGG | + | chr8_2:59716432-59716451 | None:intergenic | 25.0% |
| ! | GTAATTTCATCAAAGTAGTT+TGG | + | chr8_2:59716520-59716539 | None:intergenic | 25.0% |
| !!! | TATCTAAAAGAAAGCATTCA+CGG | + | chr8_2:59716828-59716847 | None:intergenic | 25.0% |
| TCATGATATAAGATGTTTGG+AGG | - | chr8_2:59714183-59714202 | Msa1258520:three_prime_UTR | 30.0% | |
| !! | TGGTTCAAGTTTTATCTTCA+TGG | - | chr8_2:59714236-59714255 | Msa1258520:three_prime_UTR | 30.0% |
| TTGCTTGTACGAAATAATCT+AGG | - | chr8_2:59714514-59714533 | Msa1258520:intron | 30.0% | |
| TTAGCTGGATTTAAAGACAA+CGG | - | chr8_2:59714711-59714730 | Msa1258520:intron | 30.0% | |
| GATGTTGATATAATTCTGGT+AGG | - | chr8_2:59714734-59714753 | Msa1258520:intron | 30.0% | |
| ! | AGCTTTAACATTTAGGTGAT+TGG | - | chr8_2:59714788-59714807 | Msa1258520:CDS | 30.0% |
| ACTCAGTGTCTCTTATAAAT+AGG | + | chr8_2:59714835-59714854 | None:intergenic | 30.0% | |
| GAGACACTGAGTTTATTTAT+AGG | - | chr8_2:59714843-59714862 | Msa1258520:CDS | 30.0% | |
| ! | GTTTGATTTAAATTGTCCCA+TGG | + | chr8_2:59715042-59715061 | None:intergenic | 30.0% |
| TGGGACAATTTAAATCAAAC+TGG | - | chr8_2:59715042-59715061 | Msa1258520:intron | 30.0% | |
| TCGTATAAATAGCATTAGCT+GGG | + | chr8_2:59715156-59715175 | None:intergenic | 30.0% | |
| TTCGTATAAATAGCATTAGC+TGG | + | chr8_2:59715157-59715176 | None:intergenic | 30.0% | |
| ! | TCCTACTCCTTTTATATTTG+GGG | + | chr8_2:59715196-59715215 | None:intergenic | 30.0% |
| ! | GTTCCTACTCCTTTTATATT+TGG | + | chr8_2:59715198-59715217 | None:intergenic | 30.0% |
| ! | CAATCTCTTTCTTTTGCATT+TGG | - | chr8_2:59715237-59715256 | Msa1258520:intron | 30.0% |
| ! | ATTCAAAAGTTTTGCGAATC+AGG | + | chr8_2:59715271-59715290 | None:intergenic | 30.0% |
| TTTCTTAGAAAAAAGATCGG+AGG | - | chr8_2:59715626-59715645 | Msa1258520:intron | 30.0% | |
| TTCTTAGAAAAAAGATCGGA+GGG | - | chr8_2:59715627-59715646 | Msa1258520:intron | 30.0% | |
| TGTTTCTCGTTATCAGAAAA+AGG | - | chr8_2:59715711-59715730 | Msa1258520:intron | 30.0% | |
| !!! | AGTCAATCCCAAGTTTTTTA+CGG | - | chr8_2:59715788-59715807 | Msa1258520:intron | 30.0% |
| ATTAAACAACTATTGTCGTG+TGG | - | chr8_2:59715950-59715969 | Msa1258520:intron | 30.0% | |
| TTAAACAACTATTGTCGTGT+GGG | - | chr8_2:59715951-59715970 | Msa1258520:intron | 30.0% | |
| TGAACATGTAATAATCCTGT+CGG | + | chr8_2:59716005-59716024 | None:intergenic | 30.0% | |
| GGATTATTACATGTTCATGT+AGG | - | chr8_2:59716008-59716027 | Msa1258520:intron | 30.0% | |
| TCTAATTCCCCTCTTAAAAT+AGG | - | chr8_2:59716254-59716273 | Msa1258520:intron | 30.0% | |
| !! | TTGGTTTCCTATTTTAAGAG+GGG | + | chr8_2:59716264-59716283 | None:intergenic | 30.0% |
| ! | GGTTCATCATCTTAATCTTT+TGG | + | chr8_2:59716283-59716302 | None:intergenic | 30.0% |
| AGTGTCAGACACATTATTAT+CGG | + | chr8_2:59716685-59716704 | None:intergenic | 30.0% | |
| !! | TTACTGATTCAAGGACATCT+GGG | + | chr8_2:59714264-59714283 | None:intergenic | 35.0% |
| TTGGTTGCATTATTCAGATC+CGG | - | chr8_2:59714412-59714431 | Msa1258520:intron | 35.0% | |
| ATTGCAAATATATGCATCCC+CGG | + | chr8_2:59714434-59714453 | None:intergenic | 35.0% | |
| TCGATATCACATACCTTTAG+AGG | + | chr8_2:59714635-59714654 | None:intergenic | 35.0% | |
| ACCACGAAAAGAAGTAATCA+GGG | + | chr8_2:59714685-59714704 | None:intergenic | 35.0% | |
| AACCACGAAAAGAAGTAATC+AGG | + | chr8_2:59714686-59714705 | None:intergenic | 35.0% | |
| ! | TTACTTCTTTTCGTGGTTAC+TGG | - | chr8_2:59714688-59714707 | Msa1258520:intron | 35.0% |
| TAGCTGGATTTAAAGACAAC+GGG | - | chr8_2:59714712-59714731 | Msa1258520:intron | 35.0% | |
| ACGGGATGTTGATATAATTC+TGG | - | chr8_2:59714730-59714749 | Msa1258520:intron | 35.0% | |
| CTCTTATAAATAGGACAGGA+GGG | + | chr8_2:59714826-59714845 | None:intergenic | 35.0% | |
| TCTCTTATAAATAGGACAGG+AGG | + | chr8_2:59714827-59714846 | None:intergenic | 35.0% | |
| GTGTCTCTTATAAATAGGAC+AGG | + | chr8_2:59714830-59714849 | None:intergenic | 35.0% | |
| TACTAATATAGGGGGATTGA+AGG | + | chr8_2:59714896-59714915 | None:intergenic | 35.0% | |
| ATTAATGACTCTCGTTGTAC+GGG | + | chr8_2:59714951-59714970 | None:intergenic | 35.0% | |
| CATTAATGACTCTCGTTGTA+CGG | + | chr8_2:59714952-59714971 | None:intergenic | 35.0% | |
| TAAATTGTCCCATGGTTCAA+TGG | + | chr8_2:59715034-59715053 | None:intergenic | 35.0% | |
| !! | GTGTTCTAGTTTGTATCTAG+TGG | - | chr8_2:59715104-59715123 | Msa1258520:intron | 35.0% |
| ACCCCAAATATAAAAGGAGT+AGG | - | chr8_2:59715192-59715211 | Msa1258520:intron | 35.0% | |
| ATAAAAGGAGTAGGAACTAG+AGG | - | chr8_2:59715201-59715220 | Msa1258520:intron | 35.0% | |
| TAAAAGGAGTAGGAACTAGA+GGG | - | chr8_2:59715202-59715221 | Msa1258520:intron | 35.0% | |
| ! | TCTCTTTCTTTTGCATTTGG+TGG | - | chr8_2:59715240-59715259 | Msa1258520:intron | 35.0% |
| ACACTCAACCCAAAGAAAAA+TGG | - | chr8_2:59715342-59715361 | Msa1258520:intron | 35.0% | |
| !! | AAATTTTGGTGGGAAATCCT+TGG | - | chr8_2:59715418-59715437 | Msa1258520:intron | 35.0% |
| !! | GAAATTTTAATGCCTAGCCA+AGG | + | chr8_2:59715438-59715457 | None:intergenic | 35.0% |
| ! | TGGGTTGAAATTGAAATGTG+AGG | + | chr8_2:59715920-59715939 | None:intergenic | 35.0% |
| !!! | TCTTTTTGGGTTGAAATGTG+AGG | + | chr8_2:59716059-59716078 | None:intergenic | 35.0% |
| !!! | GTGCTTAGCTTTTTAGTTAG+AGG | - | chr8_2:59716098-59716117 | Msa1258520:intron | 35.0% |
| TTGAATCCAATCTGATATGG+TGG | - | chr8_2:59716145-59716164 | Msa1258520:intron | 35.0% | |
| TGAATCCAATCTGATATGGT+GGG | - | chr8_2:59716146-59716165 | Msa1258520:intron | 35.0% | |
| !! | ACACAAGAGTGTTCAAGATT+GGG | + | chr8_2:59716186-59716205 | None:intergenic | 35.0% |
| !! | TACACAAGAGTGTTCAAGAT+TGG | + | chr8_2:59716187-59716206 | None:intergenic | 35.0% |
| !!! | ACATGCAGATGTTTTTGGAT+GGG | - | chr8_2:59716378-59716397 | Msa1258520:intron | 35.0% |
| CGGCAGCTAATTCATAATAA+CGG | + | chr8_2:59716475-59716494 | None:intergenic | 35.0% | |
| TTCTTCCTTGATATTCAGGT+AGG | - | chr8_2:59716723-59716742 | Msa1258520:CDS | 35.0% | |
| TTGCATCCTATCGTTCATTA+TGG | - | chr8_2:59716923-59716942 | Msa1258520:CDS | 35.0% | |
| !! | TTTTTAAGAGTTTGCACGTG+TGG | - | chr8_2:59716984-59717003 | Msa1258520:CDS | 35.0% |
| TGATTGATTGCTTTCTTGCT+TGG | - | chr8_2:59717026-59717045 | Msa1258520:CDS | 35.0% | |
| TGGTGATTACTTACAACACG+TGG | - | chr8_2:59714216-59714235 | Msa1258520:three_prime_UTR | 40.0% | |
| !! | TACTGATTCAAGGACATCTG+GGG | + | chr8_2:59714263-59714282 | None:intergenic | 40.0% |
| !! | CTTACTGATTCAAGGACATC+TGG | + | chr8_2:59714265-59714284 | None:intergenic | 40.0% |
| CAGATGTCCTTGAATCAGTA+AGG | - | chr8_2:59714263-59714282 | Msa1258520:three_prime_UTR | 40.0% | |
| ACCTTTAGTCATCAAAGCAG+TGG | - | chr8_2:59714327-59714346 | Msa1258520:CDS | 40.0% | |
| ! | ACCACTGCTTTGATGACTAA+AGG | + | chr8_2:59714331-59714350 | None:intergenic | 40.0% |
| TTTAGTCATCAAAGCAGTGG+TGG | - | chr8_2:59714330-59714349 | Msa1258520:CDS | 40.0% | |
| TGGTTGCATTATTCAGATCC+GGG | - | chr8_2:59714413-59714432 | Msa1258520:intron | 40.0% | |
| ! | AATAAGTTGGAAGGGAACCA+GGG | + | chr8_2:59714487-59714506 | None:intergenic | 40.0% |
| TAGGACTTGAGACAGATGAA+GGG | - | chr8_2:59714533-59714552 | Msa1258520:intron | 40.0% | |
| ! | ACCCTGATTACTTCTTTTCG+TGG | - | chr8_2:59714681-59714700 | Msa1258520:intron | 40.0% |
| TTAATGACTCTCGTTGTACG+GGG | + | chr8_2:59714950-59714969 | None:intergenic | 40.0% | |
| !!! | TTTTTTGTGCCTCATGCATG+GGG | + | chr8_2:59715003-59715022 | None:intergenic | 40.0% |
| !!! | CTTTTTTGTGCCTCATGCAT+GGG | + | chr8_2:59715004-59715023 | None:intergenic | 40.0% |
| AAAAGGAGTAGGAACTAGAG+GGG | - | chr8_2:59715203-59715222 | Msa1258520:intron | 40.0% | |
| !!! | TTGTTAGGTGGGCTACTTTT+AGG | - | chr8_2:59715824-59715843 | Msa1258520:intron | 40.0% |
| TTTAGGTATCACTGCTTCTG+TGG | - | chr8_2:59715886-59715905 | Msa1258520:intron | 40.0% | |
| TTAGGTATCACTGCTTCTGT+GGG | - | chr8_2:59715887-59715906 | Msa1258520:intron | 40.0% | |
| !!! | TAGCTTTTTAGTTAGAGGCC+AGG | - | chr8_2:59716103-59716122 | Msa1258520:intron | 40.0% |
| !!! | AGCTTTTTAGTTAGAGGCCA+GGG | - | chr8_2:59716104-59716123 | Msa1258520:intron | 40.0% |
| ATCTGCAGCGCTATGAAAAA+TGG | - | chr8_2:59716209-59716228 | Msa1258520:intron | 40.0% | |
| !!! | CACAACTCAACTTTTTTGGG+AGG | + | chr8_2:59716304-59716323 | None:intergenic | 40.0% |
| ! | TGGTGACATGCAGATGTTTT+TGG | - | chr8_2:59716373-59716392 | Msa1258520:intron | 40.0% |
| !!! | GACATGCAGATGTTTTTGGA+TGG | - | chr8_2:59716377-59716396 | Msa1258520:intron | 40.0% |
| !!! | CATGCAGATGTTTTTGGATG+GGG | - | chr8_2:59716379-59716398 | Msa1258520:intron | 40.0% |
| TGGGGAAAGAATCTCGTATT+TGG | - | chr8_2:59716397-59716416 | Msa1258520:intron | 40.0% | |
| TAATGTCAGTTGCTGCACAA+AGG | + | chr8_2:59716448-59716467 | None:intergenic | 40.0% | |
| TCTTACCGTAGTAACAAGGT+CGG | + | chr8_2:59716495-59716514 | None:intergenic | 40.0% | |
| GGATTCTTACCGTAGTAACA+AGG | + | chr8_2:59716499-59716518 | None:intergenic | 40.0% | |
| TTGGTTGTGAGTAGTCAAGA+AGG | - | chr8_2:59716592-59716611 | Msa1258520:intron | 40.0% | |
| GCAGTTCTTCCTTGATATTC+AGG | - | chr8_2:59716719-59716738 | Msa1258520:CDS | 40.0% | |
| TCATGCCTACCTGAATATCA+AGG | + | chr8_2:59716731-59716750 | None:intergenic | 40.0% | |
| GGTGACAATATGTAAGAGGA+AGG | + | chr8_2:59716855-59716874 | None:intergenic | 40.0% | |
| TCCTCTTACATATTGTCACC+AGG | - | chr8_2:59716855-59716874 | Msa1258520:intron | 40.0% | |
| TCCTGGTGACAATATGTAAG+AGG | + | chr8_2:59716859-59716878 | None:intergenic | 40.0% | |
| ACACTGCCATAATGAACGAT+AGG | + | chr8_2:59716932-59716951 | None:intergenic | 40.0% | |
| !! | TGCTCTGCCTTACTGATTCA+AGG | + | chr8_2:59714273-59714292 | None:intergenic | 45.0% |
| !! | AGGCAGAGCATTTTACAGAG+TGG | - | chr8_2:59714283-59714302 | Msa1258520:exon | 45.0% |
| ACTGGTGGAAAAATCAGTCG+AGG | - | chr8_2:59714357-59714376 | Msa1258520:CDS | 45.0% | |
| GGTTGCATTATTCAGATCCG+GGG | - | chr8_2:59714414-59714433 | Msa1258520:intron | 45.0% | |
| ! | ATAAGTTGGAAGGGAACCAG+GGG | + | chr8_2:59714486-59714505 | None:intergenic | 45.0% |
| ! | GAATAAGTTGGAAGGGAACC+AGG | + | chr8_2:59714488-59714507 | None:intergenic | 45.0% |
| CTAGGACTTGAGACAGATGA+AGG | - | chr8_2:59714532-59714551 | Msa1258520:intron | 45.0% | |
| AGGACTTGAGACAGATGAAG+GGG | - | chr8_2:59714534-59714553 | Msa1258520:intron | 45.0% | |
| AGGGGATAACAGCAACTTAC+AGG | - | chr8_2:59714552-59714571 | Msa1258520:CDS | 45.0% | |
| CCTAACAGGTAGAGGCTTAT+TGG | + | chr8_2:59714582-59714601 | None:intergenic | 45.0% | |
| CCAATAAGCCTCTACCTGTT+AGG | - | chr8_2:59714579-59714598 | Msa1258520:CDS | 45.0% | |
| ACATATGGTGAGTGCCTAAC+AGG | + | chr8_2:59714596-59714615 | None:intergenic | 45.0% | |
| TAGGCACTCACCATATGTTG+CGG | - | chr8_2:59714598-59714617 | Msa1258520:CDS | 45.0% | |
| CGTAATACTCCCGCAACATA+TGG | + | chr8_2:59714611-59714630 | None:intergenic | 45.0% | |
| !! | GGGAGTATTACGTCCTCTAA+AGG | - | chr8_2:59714619-59714638 | Msa1258520:CDS | 45.0% |
| ! | TTTCGTGGTTACTGGTTAGC+TGG | - | chr8_2:59714696-59714715 | Msa1258520:intron | 45.0% |
| !!! | CCTTTTTTGTGCCTCATGCA+TGG | + | chr8_2:59715005-59715024 | None:intergenic | 45.0% |
| CCATGCATGAGGCACAAAAA+AGG | - | chr8_2:59715002-59715021 | Msa1258520:intron | 45.0% | |
| AGGTAGTCACCATTGAACCA+TGG | - | chr8_2:59715022-59715041 | Msa1258520:intron | 45.0% | |
| GGTAGTCACCATTGAACCAT+GGG | - | chr8_2:59715023-59715042 | Msa1258520:intron | 45.0% | |
| AACACTGCTGTCACAAACAC+TGG | + | chr8_2:59715089-59715108 | None:intergenic | 45.0% | |
| TGATCTATTGGAAGTCCGAC+AGG | - | chr8_2:59715987-59716006 | Msa1258520:intron | 45.0% | |
| AATGTGAGGCCAAAGGTTCA+CGG | + | chr8_2:59716045-59716064 | None:intergenic | 45.0% | |
| ! | ATCCAATCTGATATGGTGGG+TGG | - | chr8_2:59716149-59716168 | Msa1258520:intron | 45.0% |
| !! | AGAAAGCATTCACGGTTTGC+AGG | + | chr8_2:59716820-59716839 | None:intergenic | 45.0% |
| TCGTTCATTATGGCAGTGTG+TGG | - | chr8_2:59716933-59716952 | Msa1258520:CDS | 45.0% | |
| ATGTTGTTCTGCCTATCTGC+TGG | + | chr8_2:59716961-59716980 | None:intergenic | 45.0% | |
| !! | TAAAATTTATTACTAATATA+GGG | + | chr8_2:59714906-59714925 | None:intergenic | 5.0% |
| !! | ATAAAATTTATTACTAATAT+AGG | + | chr8_2:59714907-59714926 | None:intergenic | 5.0% |
| !! | TTGTTTAATTATAAAAATTT+GGG | + | chr8_2:59715939-59715958 | None:intergenic | 5.0% |
| TTTCTACCTTTGCTTCCCCC+TGG | - | chr8_2:59714467-59714486 | Msa1258520:intron | 50.0% | |
| ! | TAAGTTGGAAGGGAACCAGG+GGG | + | chr8_2:59714485-59714504 | None:intergenic | 50.0% |
| AGGCACTCACCATATGTTGC+GGG | - | chr8_2:59714599-59714618 | Msa1258520:CDS | 50.0% | |
| GGGGATGGGTGTGGAAATAA+GGG | + | chr8_2:59714984-59715003 | None:intergenic | 50.0% | |
| TGGGGATGGGTGTGGAAATA+AGG | + | chr8_2:59714985-59715004 | None:intergenic | 50.0% | |
| TTGGTGGGAAATCCTTGGCT+AGG | - | chr8_2:59715423-59715442 | Msa1258520:intron | 50.0% | |
| TCACTGCTTCTGTGGGCATT+TGG | - | chr8_2:59715894-59715913 | Msa1258520:intron | 50.0% | |
| TCACTGCTTCCGTGAACCTT+TGG | - | chr8_2:59716033-59716052 | Msa1258520:intron | 50.0% | |
| GGGTTGAAATGTGAGGCCAA+AGG | + | chr8_2:59716052-59716071 | None:intergenic | 50.0% | |
| TTGCATGAGCGTAGTTTCCC+TGG | + | chr8_2:59716124-59716143 | None:intergenic | 50.0% | |
| TGCCACCCACCATATCAGAT+TGG | + | chr8_2:59716154-59716173 | None:intergenic | 50.0% | |
| AGCTGCCGACCTTGTTACTA+CGG | - | chr8_2:59716487-59716506 | Msa1258520:intron | 50.0% | |
| CACATGCAACGTGCAAGACA+TGG | - | chr8_2:59716757-59716776 | Msa1258520:intron | 50.0% | |
| AGAGATTACGGGCATACTCC+TGG | + | chr8_2:59716876-59716895 | None:intergenic | 50.0% | |
| GTTTGCACGTGTGGAGTCAA+CGG | - | chr8_2:59716993-59717012 | Msa1258520:CDS | 50.0% | |
| TTTGCACGTGTGGAGTCAAC+GGG | - | chr8_2:59716994-59717013 | Msa1258520:CDS | 50.0% | |
| ! | CAAAGCAGTGGTGGAGTCAC+TGG | - | chr8_2:59714339-59714358 | Msa1258520:CDS | 55.0% |
| GGTGAGTGCCTAACAGGTAG+AGG | + | chr8_2:59714590-59714609 | None:intergenic | 55.0% | |
| TGTGCCTCATGCATGGGGAT+GGG | + | chr8_2:59714998-59715017 | None:intergenic | 55.0% | |
| TTGTGCCTCATGCATGGGGA+TGG | + | chr8_2:59714999-59715018 | None:intergenic | 55.0% | |
| AGAGTGCACAGAGACGAGCA+GGG | - | chr8_2:59716643-59716662 | Msa1258520:intron | 55.0% | |
| AGACGAGCAGGGACAAGTTC+TGG | - | chr8_2:59716654-59716673 | Msa1258520:CDS | 55.0% | |
| CCCTAGCGCAGAGAGATTAC+GGG | + | chr8_2:59716887-59716906 | None:intergenic | 55.0% | |
| CCCGTAATCTCTCTGCGCTA+GGG | - | chr8_2:59716884-59716903 | Msa1258520:intron | 55.0% | |
| CCCCTAGCGCAGAGAGATTA+CGG | + | chr8_2:59716888-59716907 | None:intergenic | 55.0% | |
| CCGTAATCTCTCTGCGCTAG+GGG | - | chr8_2:59716885-59716904 | Msa1258520:intron | 55.0% | |
| AGTGTGTGGCTCCAGCAGAT+AGG | - | chr8_2:59716947-59716966 | Msa1258520:CDS | 55.0% | |
| ! | TGTTTGGAGGCGCACGTTCG+TGG | - | chr8_2:59714196-59714215 | Msa1258520:three_prime_UTR | 60.0% |
| ! | AGCAGTGGTGGAGTCACTGG+TGG | - | chr8_2:59714342-59714361 | Msa1258520:CDS | 60.0% |
| AGGGAACCAGGGGGAAGCAA+AGG | + | chr8_2:59714476-59714495 | None:intergenic | 60.0% | |
| CTCATGCATGGGGATGGGTG+TGG | + | chr8_2:59714993-59715012 | None:intergenic | 60.0% | |
| CACACCCATCCCCATGCATG+AGG | - | chr8_2:59714991-59715010 | Msa1258520:intron | 60.0% | |
| CAGAGTGCACAGAGACGAGC+AGG | - | chr8_2:59716642-59716661 | Msa1258520:intron | 60.0% | |
| GCCCGTAATCTCTCTGCGCT+AGG | - | chr8_2:59716883-59716902 | Msa1258520:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 59714178 | 59717114 | 59714178 | ID=Msa1258520;Name=Msa1258520 |
| chr8_2 | mRNA | 59714178 | 59717114 | 59714178 | ID=Msa1258520-mRNA-1;Parent=Msa1258520;Name=Msa1258520-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|1|1|1|1|1|5|124|225 |
| chr8_2 | exon | 59714178 | 59714415 | 59714178 | ID=Msa1258520-mRNA-1:exon:18646;Parent=Msa1258520-mRNA-1 |
| chr8_2 | exon | 59714552 | 59714686 | 59714552 | ID=Msa1258520-mRNA-1:exon:18645;Parent=Msa1258520-mRNA-1 |
| chr8_2 | exon | 59714784 | 59714906 | 59714784 | ID=Msa1258520-mRNA-1:exon:18644;Parent=Msa1258520-mRNA-1 |
| chr8_2 | exon | 59716652 | 59716756 | 59716652 | ID=Msa1258520-mRNA-1:exon:18643;Parent=Msa1258520-mRNA-1 |
| chr8_2 | exon | 59716914 | 59717114 | 59716914 | ID=Msa1258520-mRNA-1:exon:18642;Parent=Msa1258520-mRNA-1 |
| chr8_2 | CDS | 59716914 | 59717114 | 59716914 | ID=Msa1258520-mRNA-1:cds;Parent=Msa1258520-mRNA-1 |
| chr8_2 | CDS | 59716652 | 59716756 | 59716652 | ID=Msa1258520-mRNA-1:cds;Parent=Msa1258520-mRNA-1 |
| chr8_2 | CDS | 59714784 | 59714906 | 59714784 | ID=Msa1258520-mRNA-1:cds;Parent=Msa1258520-mRNA-1 |
| chr8_2 | CDS | 59714552 | 59714686 | 59714552 | ID=Msa1258520-mRNA-1:cds;Parent=Msa1258520-mRNA-1 |
| chr8_2 | CDS | 59714302 | 59714415 | 59714302 | ID=Msa1258520-mRNA-1:cds;Parent=Msa1258520-mRNA-1 |
| chr8_2 | three_prime_UTR | 59714178 | 59714301 | 59714178 | ID=Msa1258520-mRNA-1:three_prime_utr;Parent=Msa1258520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
