AlfalfaGEDB | Msa0228490

M. sativa cultivar zhongmu-4 / Msa0228490

KEGG: K20289
GO: GO:0003674 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005829 GO:0006810 GO:0006891 GO:0006996 GO:0007030 GO:0008104 GO:0008150 GO:0008565 GO:0009987 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0016192 GO:0017119 GO:0031984 GO:0032991 GO:0033036 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045184 GO:0048193 GO:0051179 GO:0051234 GO:0071702 GO:0071705 GO:0071840 GO:0098791 GO:0099023
PFAM: PF06148.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0228490	XP_003608844.1	99.337	754	5	0	1	754	1	754	0.0	1544

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0228490	sp\|F4JRR1\|COG2_ARATH	68.286	741	229	4	13	752	19	754	0.0	1046

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0228490	G7JLF2	99.337	754	5	0	1	754	1	754	0.0	1544

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0228490	Msa0527220	0.802512	5.416210e-49	-8.615850e-47
Msa0228490	Msa0579160	0.800469	1.420217e-48	-8.615850e-47
Msa0228490	Msa0579220	0.806157	9.427384e-50	-8.615850e-47
Msa0228490	Msa0661830	0.801041	1.085583e-48	-8.615850e-47
Msa0228490	Msa0712860	0.837145	6.178816e-57	-8.615850e-47
Msa0228490	Msa0795750	0.813938	1.986636e-51	-8.615850e-47
Msa0228490	Msa0800480	0.840021	1.117145e-57	-8.615850e-47
Msa0228490	Msa0831740	0.818377	2.022998e-52	-8.615850e-47
Msa0228490	Msa1258520	0.813903	2.022518e-51	-8.615850e-47
Msa0228490	Msa1258630	0.990341	3.537502e-182	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0228490	MtrunA17_Chr4g0057621	99.337	754	5	0	1	754	1	754	0.0	1544
Msa0228490	MtrunA17_Chr3g0136251	91.216	148	13	0	207	354	24	171	2.24e-91	284
Msa0228490	MtrunA17_Chr3g0136241	85.417	144	21	0	549	692	1	144	6.39e-76	241
Msa0228490	MtrunA17_Chr3g0136261	71.591	88	20	1	1	88	1	83	2.47e-36	132
Msa0228490	MtrunA17_Chr3g0136231	84.444	45	7	0	708	752	1	45	4.57e-20	84.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0228490	AT4G24840.1	68.286	741	229	4	13	752	19	754	0.0	1046

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Find 187 sgRNAs with CRISPR-Local

Find 509 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAAGTGTATCTCTGT+TGG	0.501400	2_1:+81729319	Msa0228490:CDS
AAAGCTTGTTGATGTGGATG+CGG	0.606209	2_1:+81726276	Msa0228490:CDS
AAAGTTGATTTGTCTATGCT+TGG	0.403185	2_1:-81725961	None:intergenic
AAATGATTATCAATTAATTA+AGG	0.283591	2_1:+81728186	Msa0228490:CDS
AAATGGAGATGTGAATTTGT+CGG	0.550788	2_1:+81727243	Msa0228490:CDS
AACCTCTCTAAGGATTGAGT+TGG	0.619915	2_1:-81728573	None:intergenic
AACCTGTGATTATTGTGTAA+AGG	0.505423	2_1:-81732847	None:intergenic
AACTGTAAACTGTTCGTACG+GGG	0.652340	2_1:-81725918	None:intergenic
AAGAAGCTCCAAAGTCTCTC+TGG	0.469395	2_1:-81726425	None:intergenic
AAGAGTCATAATACAAGCAC+CGG	0.580920	2_1:+81729549	Msa0228490:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATAACTGTAAACTGTTCGTA+CGG	-	chr2_1:81725923-81725942	None:intergenic	30.0%
CAATGAAGGTTTCTAAATTG+AGG	+	chr2_1:81726959-81726978	Msa0228490:intron	30.0%
ATGAAGGTTTCTAAATTGAG+GGG	+	chr2_1:81726961-81726980	Msa0228490:intron	30.0%
AAATGGAGATGTGAATTTGT+CGG	+	chr2_1:81727243-81727262	Msa0228490:CDS	30.0%
AGAAAAATCCATCAAGCAAT+GGG	+	chr2_1:81727266-81727285	Msa0228490:CDS	30.0%
TCAGAATGCTAATTAATCAG+TGG	-	chr2_1:81727674-81727693	None:intergenic	30.0%
TTATTGAGAATATGGAGAAG+AGG	+	chr2_1:81727930-81727949	Msa0228490:CDS	30.0%
TTATTGGATATTTCTTCAGC+TGG	+	chr2_1:81728235-81728254	Msa0228490:CDS	30.0%
TGGTAAGAAAAAGTTAGATG+AGG	-	chr2_1:81728263-81728282	None:intergenic	30.0%
AAGGTGAAAAGTAAGATTAG+CGG	-	chr2_1:81728725-81728744	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	81725893	81733069	81725893	ID=Msa0228490;Name=Msa0228490
chr2_1	mRNA	81725893	81733069	81725893	ID=Msa0228490-mRNA-1;Parent=Msa0228490;Name=Msa0228490-mRNA-1;_AED=0.15;_eAED=0.15;_QI=126\|1\|1\|1\|0.91\|0.84\|13\|218\|754
chr2_1	exon	81725893	81726474	81725893	ID=Msa0228490-mRNA-1:exon:24455;Parent=Msa0228490-mRNA-1
chr2_1	exon	81727196	81727402	81727196	ID=Msa0228490-mRNA-1:exon:24456;Parent=Msa0228490-mRNA-1
chr2_1	exon	81727920	81728256	81727920	ID=Msa0228490-mRNA-1:exon:24457;Parent=Msa0228490-mRNA-1
chr2_1	exon	81728540	81728701	81728540	ID=Msa0228490-mRNA-1:exon:24458;Parent=Msa0228490-mRNA-1
chr2_1	exon	81729028	81729127	81729028	ID=Msa0228490-mRNA-1:exon:24459;Parent=Msa0228490-mRNA-1
chr2_1	exon	81729214	81729429	81729214	ID=Msa0228490-mRNA-1:exon:24460;Parent=Msa0228490-mRNA-1
chr2_1	exon	81729512	81729620	81729512	ID=Msa0228490-mRNA-1:exon:24461;Parent=Msa0228490-mRNA-1
chr2_1	exon	81729914	81730114	81729914	ID=Msa0228490-mRNA-1:exon:24462;Parent=Msa0228490-mRNA-1
chr2_1	exon	81730273	81730377	81730273	ID=Msa0228490-mRNA-1:exon:24463;Parent=Msa0228490-mRNA-1
chr2_1	exon	81732128	81732250	81732128	ID=Msa0228490-mRNA-1:exon:24464;Parent=Msa0228490-mRNA-1
chr2_1	exon	81732348	81732482	81732348	ID=Msa0228490-mRNA-1:exon:24465;Parent=Msa0228490-mRNA-1
chr2_1	exon	81732619	81732856	81732619	ID=Msa0228490-mRNA-1:exon:24466;Parent=Msa0228490-mRNA-1
chr2_1	exon	81732976	81733069	81732976	ID=Msa0228490-mRNA-1:exon:24467;Parent=Msa0228490-mRNA-1
chr2_1	five_prime_UTR	81725893	81726018	81725893	ID=Msa0228490-mRNA-1:five_prime_utr;Parent=Msa0228490-mRNA-1
chr2_1	CDS	81726019	81726474	81726019	ID=Msa0228490-mRNA-1:cds;Parent=Msa0228490-mRNA-1
chr2_1	CDS	81727196	81727402	81727196	ID=Msa0228490-mRNA-1:cds;Parent=Msa0228490-mRNA-1
chr2_1	CDS	81727920	81728256	81727920	ID=Msa0228490-mRNA-1:cds;Parent=Msa0228490-mRNA-1
chr2_1	CDS	81728540	81728701	81728540	ID=Msa0228490-mRNA-1:cds;Parent=Msa0228490-mRNA-1
chr2_1	CDS	81729028	81729127	81729028	ID=Msa0228490-mRNA-1:cds;Parent=Msa0228490-mRNA-1
chr2_1	CDS	81729214	81729429	81729214	ID=Msa0228490-mRNA-1:cds;Parent=Msa0228490-mRNA-1
chr2_1	CDS	81729512	81729620	81729512	ID=Msa0228490-mRNA-1:cds;Parent=Msa0228490-mRNA-1
chr2_1	CDS	81729914	81730114	81729914	ID=Msa0228490-mRNA-1:cds;Parent=Msa0228490-mRNA-1
chr2_1	CDS	81730273	81730377	81730273	ID=Msa0228490-mRNA-1:cds;Parent=Msa0228490-mRNA-1
chr2_1	CDS	81732128	81732250	81732128	ID=Msa0228490-mRNA-1:cds;Parent=Msa0228490-mRNA-1
chr2_1	CDS	81732348	81732482	81732348	ID=Msa0228490-mRNA-1:cds;Parent=Msa0228490-mRNA-1
chr2_1	CDS	81732619	81732732	81732619	ID=Msa0228490-mRNA-1:cds;Parent=Msa0228490-mRNA-1
chr2_1	three_prime_UTR	81732733	81732856	81732733	ID=Msa0228490-mRNA-1:three_prime_utr;Parent=Msa0228490-mRNA-1
chr2_1	three_prime_UTR	81732976	81733069	81732976	ID=Msa0228490-mRNA-1:three_prime_utr;Parent=Msa0228490-mRNA-1

Gene Sequence

>Msa0228490

ATGGCGGATCCAGTTCCAGCGCATCACAGATCCACCACAAACCTCTTCTCCGATCCACTCGACTCTCATCCTCTCTGGTTCAAACCTACCTCCTTCCTCTCCCCTGACTTCGATTCCGAATCCTACATTTCCGAACTCCGAACCTTCGTTCCCTTTGACACACTCCGATCGGAACTAAACAACTATCTCTCATCGTTAAATCACGAGCTCATTGATCTAATCAACCGCGACTACGCTGATTTCGTTAATTTGAGTACAAAGCTTGTTGATGTGGATGCGGCGGTGGTGCGGATGCGTGCGCCACTTGTGGAGTTGAGGGAGAAGATTGAACAGTTTAGAGGTTCTGTTGATGTTTCGCTTGTTGCTATAAAGAATGGTTTGAAGCAACGATCTGAAGCTGCTTCTGCCAGAGAGACTTTGGAGCTTCTTCTTGATACGTTTCATGTTGTTTCTAAGGTTGAGAAACTGATAAAGGAGCTGCCTAGTGTACCCTCTGACTGGTCAAATGGAGATGTGAATTTGTCGGAGAAAAATCCATCAAGCAATGGGGTTTCTGTGCAGCAAGTTGAGAATGGGACAAGTGTCAGAGAGACTCAAAGTATGCTGCTGGAAAGAATTGCCAGTGAGATGAACCGGCTAAAGTTCTATGTTACACATGCGAAGAACCTGCCTTTTATTGAGAATATGGAGAAGAGGATTCAAAATGCAAGCCTACTAGTAGATGCAAGCTTGGGACATTGCTTTGTAGATGGTCTAGAACACCGGGATGCAACTGCAATTTACAATTGCTTACGTGCATATGCTGCCATTGATAACACCAAAAATGCAGAAGAAACTTTTCGAGTGACTGTTGTGGCTCCATTGATACAGAAGATTATCCCACATGGGTCATCGGCTGTGGCTTCTGGATCATCTGGGGATGGGCTTGAAAATGATTATCAATTAATTAAGGAGTGCGTTTATAAAGACTGTAAATTTTTATTGGATATTTCTTCAGCTGAAAATTCAGGTTTACACGTCTTTGACTTCTTGGCCAACTCAATCCTTAGAGAGGTTCTCTTTGCTATTCAGAAGGGAAAGCCAGGTGCATTTTCTGTTGGAAGACCAACAGAGTTCTTGAAAAATTACAAATCAAGCTTGGAATTCTTGGCTTATCTTGAAGGCTACTGTCCGTCTAGATCTGCCGTTGCTAAATTTCGATCTGAAGCAATCTATACCGAGTTCATGAAACAATGGAATCTTGGAGCGTATTTTTCTGTGAGGTTTCAGGAAATAGCAGGGTCTTTAGATTCTGTGCTGACAACATCCAGTGTTGTCCCTGTCCAAAATTTAGATCCTGGCGAAGCAAATTATCAAGACTTAAAACTAAAACAAAGTGTATCTCTGTTGGAGAGTTTGGGATTGTGCTGGAGAGAAGATATTCTTGCCCTTTCTTGTTCTGACAAGTTCCTTCGCCTATCCTTGCAGCTTCTTTCTAGATACTCAACTTGGCTGTCATCTGGACTGACTGCACGGAAGAGTCATAATACAAGCACCGGCACTGGGCGCGGATGGGCTGTTTCAGCTGCCATAGATGACTTTATCCTTGTTATTCATGATATAAGATGTTTGGAGGCGCATGTTCGTGGTGATTACTTACAACACGTGGTTCAAGTTTTATCTTCATGGTCCCCAGATGTCCTTGAATCAGTAAGGCAGAGCATTTTACAGAGTGGTGAATCCTTGAAATCTTTAGAACCTTTAGTCATCAAAGCAGTGGTGGAGTCACTGGTGGAAAAATCAGTCGAGGACTTGAGACAGATGAAGGGGATAACAGCAACTTACAGGATGACCAATAAGCCTCTACCTGTTAGGCACTCACCATATGTTGCGGGAGTATTACGTCCTCTAAAGATGTTTTTGGATGGGGAAAGAATCTCGTATTTGGCAAGCGAAACCAAAAATGAAATACTCCTTTGTGCAGCAACTGACATTACTGACCGTTATTATGAATTAGCTGCCGACCTTGTTACTACGTCAAGAAGGACAGAATCTTCACTACAGAAAATTAGACAGAGTGCACAGAGACGAGCAGGGACAAGTTCTGGCATCTCCGATAATAATGTGTCTGACACTGACAGAATGTGTATGCAGTTCTTCCTTGATATTCAGGAGTATGCCCGTAATCTCTCTGCGCTAGGGGTTGAAGCAAGCAATATTGCATCCTATCGTTCATTATGGCAGTGTGTGGCTCCAGCAGATAGGCAGAACAACATTATTTTTTAA

Protein sequence

>Msa0228490

MADPVPAHHRSTTNLFSDPLDSHPLWFKPTSFLSPDFDSESYISELRTFVPFDTLRSELNNYLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLVELREKIEQFRGSVDVSLVAIKNGLKQRSEAASARETLELLLDTFHVVSKVEKLIKELPSVPSDWSNGDVNLSEKNPSSNGVSVQQVENGTSVRETQSMLLERIASEMNRLKFYVTHAKNLPFIENMEKRIQNASLLVDASLGHCFVDGLEHRDATAIYNCLRAYAAIDNTKNAEETFRVTVVAPLIQKIIPHGSSAVASGSSGDGLENDYQLIKECVYKDCKFLLDISSAENSGLHVFDFLANSILREVLFAIQKGKPGAFSVGRPTEFLKNYKSSLEFLAYLEGYCPSRSAVAKFRSEAIYTEFMKQWNLGAYFSVRFQEIAGSLDSVLTTSSVVPVQNLDPGEANYQDLKLKQSVSLLESLGLCWREDILALSCSDKFLRLSLQLLSRYSTWLSSGLTARKSHNTSTGTGRGWAVSAAIDDFILVIHDIRCLEAHVRGDYLQHVVQVLSSWSPDVLESVRQSILQSGESLKSLEPLVIKAVVESLVEKSVEDLRQMKGITATYRMTNKPLPVRHSPYVAGVLRPLKMFLDGERISYLASETKNEILLCAATDITDRYYELAADLVTTSRRTESSLQKIRQSAQRRAGTSSGISDNNVSDTDRMCMQFFLDIQEYARNLSALGVEASNIASYRSLWQCVAPADRQNNIIF*