AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1261200

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 135 sgRNAs with CRISPR-Local

Find 354 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCACATTGAATTGGTATTT+TGG 0.124443 8_2:+63510817 Msa1261200:three_prime_UTR
TGCCATTGGCATCTTCTTCT+TGG 0.163447 8_2:-63511002 None:intergenic
TCTCTCTTGGAAGACATTTC+TGG 0.215136 8_2:+63509465 Msa1261200:CDS
GGAGCATCTACAATACAATT+TGG 0.261765 8_2:+63510225 Msa1261200:three_prime_UTR
GTGCACGAAAAGGAAATTTA+TGG 0.264464 8_2:+63510366 Msa1261200:three_prime_UTR
ACTGGGATCTCTGGTGGGTT+TGG 0.267868 8_2:+63509489 Msa1261200:CDS
GGCAAGTTCCTAGATGAATT+TGG 0.282375 8_2:-63510052 None:intergenic
TGCCGGAGGTAGAGCTGTTT+TGG 0.290721 8_2:+63511230 Msa1261200:three_prime_UTR
AGGATGACACTTTATCGTTT+TGG 0.293129 8_2:+63511303 Msa1261200:three_prime_UTR
TCCCTTCTTAATTCTCCCTT+TGG 0.293276 8_2:-63511373 None:intergenic
ATGACCAATGCATAGGAATT+AGG 0.295997 8_2:-63510781 None:intergenic
ATCAGAATTCCTATATCTTT+AGG 0.301992 8_2:-63510598 None:intergenic
CCACAAGCGGGGAAAGAAAA+AGG 0.302734 8_2:-63510147 None:intergenic
ACAAGTGGTGGGTCTAGTTT+AGG 0.306892 8_2:+63511689 Msa1261200:three_prime_UTR
TACCTTGTCAAAAGATCTTA+TGG 0.307989 8_2:+63511035 Msa1261200:three_prime_UTR
AGCTTGAAATCAGGAATATA+AGG 0.312020 8_2:-63511183 None:intergenic
TTAACAGATTTCTTGAAATC+AGG 0.316167 8_2:-63510073 None:intergenic
TTTCTAGCTTCTTTCATTGA+AGG 0.316291 8_2:-63510514 None:intergenic
GCTTCTTTCATTGAAGGATT+AGG 0.319754 8_2:-63510508 None:intergenic
GCCATTGGCATCTTCTTCTT+GGG 0.324702 8_2:-63511001 None:intergenic
CGATAAAGTGTCATCCTTGA+TGG 0.332202 8_2:-63511297 None:intergenic
GGTGGGATGGGTTGCAGTGC+GGG 0.335773 8_2:+63510715 Msa1261200:three_prime_UTR
TGGCAAATAGCATTTGGTTC+TGG 0.340846 8_2:+63511405 Msa1261200:three_prime_UTR
TCAACAAGGTACACCGGTTT+CGG 0.345198 8_2:-63510310 None:intergenic
GTGCACTTACGCGATTCTTC+AGG 0.355117 8_2:-63510349 None:intergenic
CAGTTCACTTTGGTATGAAT+TGG 0.362955 8_2:+63511338 Msa1261200:three_prime_UTR
TCTGGTGGGTTTGGTCTTCA+AGG 0.363067 8_2:+63509498 Msa1261200:CDS
CAGCATTAGGTGGTAGTTGT+TGG 0.377971 8_2:+63511579 Msa1261200:three_prime_UTR
TTCTAATTGTTTGTTTCGAA+TGG 0.382081 8_2:+63510861 Msa1261200:three_prime_UTR
ATTTCTGGCACTGGGATCTC+TGG 0.390056 8_2:+63509480 Msa1261200:CDS
AAAGATCTTATGGCAGTTGC+AGG 0.390576 8_2:+63511045 Msa1261200:three_prime_UTR
CCCAAATATCATAAAAGTCT+TGG 0.400754 8_2:-63510204 None:intergenic
CAAGTGGTGGGTCTAGTTTA+GGG 0.402066 8_2:+63511690 Msa1261200:three_prime_UTR
TTGGAAGACATTTCTGGCAC+TGG 0.407069 8_2:+63509471 Msa1261200:CDS
GTTCAGATGGTAGATACCTT+TGG 0.409315 8_2:-63511531 None:intergenic
ACAGTAAAGCCTAAAGATAT+AGG 0.416419 8_2:+63510589 Msa1261200:three_prime_UTR
AATCCACAATGCATTCGTTC+AGG 0.417121 8_2:-63509643 None:intergenic
AGAACATGGCAAATAGCATT+TGG 0.419756 8_2:+63511399 Msa1261200:three_prime_UTR
GAAGATGCCAATGGCAAGAT+TGG 0.421328 8_2:+63511009 Msa1261200:three_prime_UTR
GATACCTTTGGAACATCAAC+AGG 0.425393 8_2:-63511519 None:intergenic
TTGGAACATCAACAGGAAAC+TGG 0.427742 8_2:-63511512 None:intergenic
AGTAGTTGTGTATCAGCATT+AGG 0.430024 8_2:+63511566 Msa1261200:three_prime_UTR
TCTAATTGTTTGTTTCGAAT+GGG 0.432398 8_2:+63510862 Msa1261200:three_prime_UTR
GCAGCTATCTCCATGGCATA+TGG 0.435506 8_2:+63511272 Msa1261200:three_prime_UTR
TGGAGAATATCACATTGAAT+TGG 0.437805 8_2:+63510809 Msa1261200:three_prime_UTR
TGCGAACCGTGGTGATCAAT+TGG 0.438062 8_2:-63510939 None:intergenic
CTGGCACTGGGATCTCTGGT+GGG 0.438999 8_2:+63509484 Msa1261200:CDS
TTGAAGATAGCGACGGAGTT+GGG 0.440924 8_2:-63510642 None:intergenic
AAATTGAAGTATGTTAAACT+TGG 0.445451 8_2:+63510094 Msa1261200:three_prime_UTR
CGAAAGATTCTTGAGAGATC+GGG 0.455522 8_2:+63510439 Msa1261200:three_prime_UTR
CTGTTCTTCACCACATTGGT+TGG 0.466086 8_2:+63511132 Msa1261200:three_prime_UTR
TTCTTGAGAGATCGGGACTC+GGG 0.466115 8_2:+63510446 Msa1261200:three_prime_UTR
ATTCTTGAGAGATCGGGACT+CGG 0.466508 8_2:+63510445 Msa1261200:three_prime_UTR
TCTGGCACTGGGATCTCTGG+TGG 0.467621 8_2:+63509483 Msa1261200:CDS
GGAAAGTTAAGAACAGCCTC+TGG 0.468115 8_2:-63510484 None:intergenic
TCAAAAGCTAGCTTGAAATC+AGG 0.468264 8_2:-63511192 None:intergenic
GCGAAAGATTCTTGAGAGAT+CGG 0.468284 8_2:+63510438 Msa1261200:three_prime_UTR
AACAGTAGTTGTTCTGATGT+TGG 0.477505 8_2:-63511114 None:intergenic
TGTTCTTCACCACATTGGTT+GGG 0.482146 8_2:+63511133 Msa1261200:three_prime_UTR
GTGCAGTGTGGAAGGCTCTC+AGG 0.489224 8_2:+63511442 Msa1261200:three_prime_UTR
AGCTACAACCTAGGTGGGAT+GGG 0.489907 8_2:+63510703 Msa1261200:three_prime_UTR
ACTTGATGCCAAATTCATCT+AGG 0.494164 8_2:+63510044 Msa1261200:three_prime_UTR
TATCACTATCTAATCACTCA+TGG 0.499740 8_2:+63510118 Msa1261200:three_prime_UTR
CTTTCTGGTGTACAAGTGGT+GGG 0.515133 8_2:+63511678 Msa1261200:three_prime_UTR
GCTTTCTGGTGTACAAGTGG+TGG 0.516598 8_2:+63511677 Msa1261200:three_prime_UTR
AGCCAAAGGGAGAATTAAGA+AGG 0.519483 8_2:+63511371 Msa1261200:three_prime_UTR
ATTGAAGATAGCGACGGAGT+TGG 0.522625 8_2:-63510643 None:intergenic
GTCAATCATTACAAGCTTCG+AGG 0.523795 8_2:+63510670 Msa1261200:three_prime_UTR
AATATCATAAAAGTCTTGGA+TGG 0.525987 8_2:-63510200 None:intergenic
CATACTAAATAGCTCATCAA+TGG 0.528167 8_2:-63510563 None:intergenic
CTATGCATTGGTCATTAGCA+TGG 0.531088 8_2:+63510789 Msa1261200:three_prime_UTR
TGGAAGACATTTCTGGCACT+GGG 0.532020 8_2:+63509472 Msa1261200:CDS
GGAAATTTATGGATCAGTCT+AGG 0.532242 8_2:+63510377 Msa1261200:three_prime_UTR
CATAGGAATTAGGATTGGCC+TGG 0.532315 8_2:-63510771 None:intergenic
ATCCAAAACAGCTCTACCTC+CGG 0.535564 8_2:-63511232 None:intergenic
CATGGCATATGGAGCCATCA+AGG 0.538526 8_2:+63511283 Msa1261200:three_prime_UTR
CAATCCTAATTCCTATGCAT+TGG 0.538699 8_2:+63510777 Msa1261200:three_prime_UTR
AATCGCGTAAGTGCACGAAA+AGG 0.539987 8_2:+63510356 Msa1261200:three_prime_UTR
CTTCCTGAACGAATGCATTG+TGG 0.540223 8_2:+63509640 Msa1261200:CDS
GAGCTACAACCTAGGTGGGA+TGG 0.541792 8_2:+63510702 Msa1261200:three_prime_UTR
AGGTGGGATGGGTTGCAGTG+CGG 0.542640 8_2:+63510714 Msa1261200:three_prime_UTR
TCTTTCATTGAAGGATTAGG+AGG 0.545431 8_2:-63510505 None:intergenic
GTGTAACAGTGCAGTGTGGA+AGG 0.546504 8_2:+63511434 Msa1261200:three_prime_UTR
AAAACTAATATCACTACACT+AGG 0.546944 8_2:+63511078 Msa1261200:three_prime_UTR
GTGGGATGGGTTGCAGTGCG+GGG 0.548925 8_2:+63510716 Msa1261200:three_prime_UTR
CAGCAATCAACACCACAAGC+GGG 0.556496 8_2:-63510159 None:intergenic
GTTTCCTGTTGATGTTCCAA+AGG 0.557767 8_2:+63511515 Msa1261200:three_prime_UTR
ACACATCTAGCAGTTCACTT+TGG 0.560068 8_2:+63511328 Msa1261200:three_prime_UTR
TGGTCAATCTCATCTATCCA+AGG 0.561417 8_2:-63511492 None:intergenic
GTTTCGAATGGGAGGAGCTG+TGG 0.564123 8_2:+63510873 Msa1261200:three_prime_UTR
GAAGCTGAGACTGTGATGTT+CGG 0.565891 8_2:+63510538 Msa1261200:three_prime_UTR
TCAATCATTACAAGCTTCGA+GGG 0.569665 8_2:+63510671 Msa1261200:three_prime_UTR
ACTACTGTTCTTCACCACAT+TGG 0.569759 8_2:+63511128 Msa1261200:three_prime_UTR
AATTGTTTGTTTCGAATGGG+AGG 0.571309 8_2:+63510865 Msa1261200:three_prime_UTR
AAATTGGAAAACATGGGAAG+AGG 0.571781 8_2:-63509562 None:intergenic
TCTGCTTTCTGGTGTACAAG+TGG 0.574614 8_2:+63511674 Msa1261200:three_prime_UTR
AATATAAAGAGCTACAACCT+AGG 0.575611 8_2:+63510694 Msa1261200:three_prime_UTR
CAGGACAATCAACCCTGTGA+AGG 0.575639 8_2:+63511461 Msa1261200:three_prime_UTR
TTACAATCTCGTCGTTCAGA+TGG 0.578695 8_2:-63511544 None:intergenic
TCTTGCTAAAGATCTTCTCC+AGG 0.579124 8_2:+63510753 Msa1261200:three_prime_UTR
CATTGTGGATTTATACACAA+AGG 0.580100 8_2:+63509655 Msa1261200:CDS
CTTGATGGCTCCATATGCCA+TGG 0.584004 8_2:-63511282 None:intergenic
TAAAGAGCTACAACCTAGGT+GGG 0.586492 8_2:+63510698 Msa1261200:three_prime_UTR
TGGCTTACACAGAAGCCAAA+GGG 0.588822 8_2:+63511358 Msa1261200:three_prime_UTR
GGTAACACCAATCTTGCCAT+TGG 0.592052 8_2:-63511016 None:intergenic
AAACAGCTCTACCTCCGGCA+TGG 0.599316 8_2:-63511227 None:intergenic
CAATGCATAGGAATTAGGAT+TGG 0.604720 8_2:-63510776 None:intergenic
CACCACGGTTCGCACTAACA+AGG 0.615650 8_2:+63510948 Msa1261200:three_prime_UTR
TCTTGAGAGATCGGGACTCG+GGG 0.615846 8_2:+63510447 Msa1261200:three_prime_UTR
GCAGCAATCAACACCACAAG+CGG 0.616150 8_2:-63510160 None:intergenic
AAAACTTGCAGCTATCTCCA+TGG 0.616208 8_2:+63511265 Msa1261200:three_prime_UTR
GCCAAAGGGAGAATTAAGAA+GGG 0.617206 8_2:+63511372 Msa1261200:three_prime_UTR
CATGCTAATGACCAATGCAT+AGG 0.618448 8_2:-63510788 None:intergenic
AAACTAATATCACTACACTA+GGG 0.618694 8_2:+63511079 Msa1261200:three_prime_UTR
TATATCTTTAGGCTTTACTG+TGG 0.620510 8_2:-63510587 None:intergenic
TTGGCTTACACAGAAGCCAA+AGG 0.624548 8_2:+63511357 Msa1261200:three_prime_UTR
CTGTGAAGGAGAAAAGCCCT+TGG 0.625413 8_2:+63511475 Msa1261200:three_prime_UTR
GGTCAATCTCATCTATCCAA+GGG 0.627776 8_2:-63511491 None:intergenic
CACTGCAACCCATCCCACCT+AGG 0.640569 8_2:-63510711 None:intergenic
AGCAATCAACACCACAAGCG+GGG 0.641574 8_2:-63510158 None:intergenic
ATAAAGAGCTACAACCTAGG+TGG 0.642158 8_2:+63510697 Msa1261200:three_prime_UTR
TCTGATGTTGGAAGTACGAG+AGG 0.642235 8_2:-63511102 None:intergenic
GGAATCTACTTATCTTCCAG+AGG 0.644232 8_2:+63510468 Msa1261200:three_prime_UTR
TTAAGAAGGGAGATAGAACA+TGG 0.646961 8_2:+63511385 Msa1261200:three_prime_UTR
AAGTGGTGGGTCTAGTTTAG+GGG 0.648800 8_2:+63511691 Msa1261200:three_prime_UTR
AAAGCGTGGACAGGAAAACA+AGG 0.654849 8_2:-63510273 None:intergenic
ACCCAAGAAGAAGATGCCAA+TGG 0.668165 8_2:+63511000 Msa1261200:three_prime_UTR
AAGTTTCTTCCCAACCAATG+TGG 0.668173 8_2:-63511142 None:intergenic
ACAATCATTGAAGATAGCGA+CGG 0.668618 8_2:-63510649 None:intergenic
GAGAAATCAACAAGGTACAC+CGG 0.678354 8_2:-63510316 None:intergenic
AGTTGTGTATCAGCATTAGG+TGG 0.680421 8_2:+63511569 Msa1261200:three_prime_UTR
TCAAGTGTAACAGTGCAGTG+TGG 0.713371 8_2:+63511430 Msa1261200:three_prime_UTR
AGCCTTGTTAGTGCGAACCG+TGG 0.715624 8_2:-63510950 None:intergenic
AAAATACCAATTGATCACCA+CGG 0.722409 8_2:+63510933 Msa1261200:three_prime_UTR
TGTAACATGAGAAATCAACA+AGG 0.794037 8_2:-63510324 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTAATAATCAACAAAAA+TGG - chr8_2:63509805-63509824 None:intergenic 10.0%
!! AAATTAATAATCAACAAAAA+TGG - chr8_2:63509805-63509824 None:intergenic 10.0%
!!! GATTAAATATTTTCCTTTAA+TGG - chr8_2:63509964-63509983 None:intergenic 15.0%
!!! GATTAAATATTTTCCTTTAA+TGG - chr8_2:63509964-63509983 None:intergenic 15.0%
!! AATGAAAAATTGGAAAACAT+GGG - chr8_2:63509571-63509590 None:intergenic 20.0%
!! TAATGAAAAATTGGAAAACA+TGG - chr8_2:63509572-63509591 None:intergenic 20.0%
!!! ATTGATTTAACTTTTGAACA+GGG + chr8_2:63509991-63510010 Msa1261200:intron 20.0%
!! AAATTGAAGTATGTTAAACT+TGG + chr8_2:63510094-63510113 Msa1261200:three_prime_UTR 20.0%
!!! ATTGATGAAATTTTCTTTCT+GGG + chr8_2:63511602-63511621 Msa1261200:three_prime_UTR 20.0%
!! AATGAAAAATTGGAAAACAT+GGG - chr8_2:63509571-63509590 None:intergenic 20.0%
!! TAATGAAAAATTGGAAAACA+TGG - chr8_2:63509572-63509591 None:intergenic 20.0%
!!! ATTGATTTAACTTTTGAACA+GGG + chr8_2:63509991-63510010 Msa1261200:intron 20.0%
!! AAATTGAAGTATGTTAAACT+TGG + chr8_2:63510094-63510113 Msa1261200:three_prime_UTR 20.0%
!!! ATTGATGAAATTTTCTTTCT+GGG + chr8_2:63511602-63511621 Msa1261200:three_prime_UTR 20.0%
!!! GAATTTGCTATAATTCTAAC+AGG + chr8_2:63509872-63509891 Msa1261200:intron 25.0%
!! ACTCATGATTTTTCCATTAA+AGG + chr8_2:63509948-63509967 Msa1261200:intron 25.0%
!!! GATTGATTTAACTTTTGAAC+AGG + chr8_2:63509990-63510009 Msa1261200:intron 25.0%
! TTAACAGATTTCTTGAAATC+AGG - chr8_2:63510076-63510095 None:intergenic 25.0%
! AATATCATAAAAGTCTTGGA+TGG - chr8_2:63510203-63510222 None:intergenic 25.0%
!! TCCAAGACTTTTATGATATT+TGG + chr8_2:63510203-63510222 Msa1261200:three_prime_UTR 25.0%
!! CCAAGACTTTTATGATATTT+GGG + chr8_2:63510204-63510223 Msa1261200:three_prime_UTR 25.0%
! ATCAGAATTCCTATATCTTT+AGG - chr8_2:63510601-63510620 None:intergenic 25.0%
!! ATCACATTGAATTGGTATTT+TGG + chr8_2:63510817-63510836 Msa1261200:three_prime_UTR 25.0%
! TTCTAATTGTTTGTTTCGAA+TGG + chr8_2:63510861-63510880 Msa1261200:three_prime_UTR 25.0%
! TCTAATTGTTTGTTTCGAAT+GGG + chr8_2:63510862-63510881 Msa1261200:three_prime_UTR 25.0%
! AAAACTAATATCACTACACT+AGG + chr8_2:63511078-63511097 Msa1261200:three_prime_UTR 25.0%
! AAACTAATATCACTACACTA+GGG + chr8_2:63511079-63511098 Msa1261200:three_prime_UTR 25.0%
!! GATTGATGAAATTTTCTTTC+TGG + chr8_2:63511601-63511620 Msa1261200:three_prime_UTR 25.0%
!!! GAATTTGCTATAATTCTAAC+AGG + chr8_2:63509872-63509891 Msa1261200:intron 25.0%
!! ACTCATGATTTTTCCATTAA+AGG + chr8_2:63509948-63509967 Msa1261200:intron 25.0%
!!! GATTGATTTAACTTTTGAAC+AGG + chr8_2:63509990-63510009 Msa1261200:intron 25.0%
! TTAACAGATTTCTTGAAATC+AGG - chr8_2:63510076-63510095 None:intergenic 25.0%
! AATATCATAAAAGTCTTGGA+TGG - chr8_2:63510203-63510222 None:intergenic 25.0%
!! TCCAAGACTTTTATGATATT+TGG + chr8_2:63510203-63510222 Msa1261200:three_prime_UTR 25.0%
!! CCAAGACTTTTATGATATTT+GGG + chr8_2:63510204-63510223 Msa1261200:three_prime_UTR 25.0%
! ATCAGAATTCCTATATCTTT+AGG - chr8_2:63510601-63510620 None:intergenic 25.0%
!! ATCACATTGAATTGGTATTT+TGG + chr8_2:63510817-63510836 Msa1261200:three_prime_UTR 25.0%
! TTCTAATTGTTTGTTTCGAA+TGG + chr8_2:63510861-63510880 Msa1261200:three_prime_UTR 25.0%
! TCTAATTGTTTGTTTCGAAT+GGG + chr8_2:63510862-63510881 Msa1261200:three_prime_UTR 25.0%
! AAAACTAATATCACTACACT+AGG + chr8_2:63511078-63511097 Msa1261200:three_prime_UTR 25.0%
! AAACTAATATCACTACACTA+GGG + chr8_2:63511079-63511098 Msa1261200:three_prime_UTR 25.0%
!! GATTGATGAAATTTTCTTTC+TGG + chr8_2:63511601-63511620 Msa1261200:three_prime_UTR 25.0%
! AAGGTACAATTTTGTGAACT+GGG + chr8_2:63509517-63509536 Msa1261200:CDS 30.0%
TGCAGTGAGTAATGAAAAAT+TGG - chr8_2:63509581-63509600 None:intergenic 30.0%
CATTGTGGATTTATACACAA+AGG + chr8_2:63509655-63509674 Msa1261200:CDS 30.0%
TACTCAACATGAAAATCAAG+TGG - chr8_2:63509760-63509779 None:intergenic 30.0%
GTAGAAATTGTTACTGCAAA+TGG + chr8_2:63509837-63509856 Msa1261200:intron 30.0%
AATCATGAGTGACAACAAAA+GGG - chr8_2:63509938-63509957 None:intergenic 30.0%
AAATCATGAGTGACAACAAA+AGG - chr8_2:63509939-63509958 None:intergenic 30.0%
TATCACTATCTAATCACTCA+TGG + chr8_2:63510118-63510137 Msa1261200:three_prime_UTR 30.0%
CCCAAATATCATAAAAGTCT+TGG - chr8_2:63510207-63510226 None:intergenic 30.0%
TGTAACATGAGAAATCAACA+AGG - chr8_2:63510327-63510346 None:intergenic 30.0%
! TAGGATGATCAGTACTTTTA+CGG + chr8_2:63510396-63510415 Msa1261200:three_prime_UTR 30.0%
!! TTTCTAGCTTCTTTCATTGA+AGG - chr8_2:63510517-63510536 None:intergenic 30.0%
CATACTAAATAGCTCATCAA+TGG - chr8_2:63510566-63510585 None:intergenic 30.0%
TATATCTTTAGGCTTTACTG+TGG - chr8_2:63510590-63510609 None:intergenic 30.0%
ACAGTAAAGCCTAAAGATAT+AGG + chr8_2:63510589-63510608 Msa1261200:three_prime_UTR 30.0%
AATATAAAGAGCTACAACCT+AGG + chr8_2:63510694-63510713 Msa1261200:three_prime_UTR 30.0%
TGGAGAATATCACATTGAAT+TGG + chr8_2:63510809-63510828 Msa1261200:three_prime_UTR 30.0%
!! ATTGGTATTTTGGAAACGAT+CGG + chr8_2:63510827-63510846 Msa1261200:three_prime_UTR 30.0%
AAAATACCAATTGATCACCA+CGG + chr8_2:63510933-63510952 Msa1261200:three_prime_UTR 30.0%
TACCTTGTCAAAAGATCTTA+TGG + chr8_2:63511035-63511054 Msa1261200:three_prime_UTR 30.0%
AGCTTGAAATCAGGAATATA+AGG - chr8_2:63511186-63511205 None:intergenic 30.0%
! AGGAATTTTATTCTGCTTTC+TGG + chr8_2:63511663-63511682 Msa1261200:three_prime_UTR 30.0%
! AAGGTACAATTTTGTGAACT+GGG + chr8_2:63509517-63509536 Msa1261200:CDS 30.0%
TGCAGTGAGTAATGAAAAAT+TGG - chr8_2:63509581-63509600 None:intergenic 30.0%
CATTGTGGATTTATACACAA+AGG + chr8_2:63509655-63509674 Msa1261200:CDS 30.0%
TACTCAACATGAAAATCAAG+TGG - chr8_2:63509760-63509779 None:intergenic 30.0%
GTAGAAATTGTTACTGCAAA+TGG + chr8_2:63509837-63509856 Msa1261200:intron 30.0%
AATCATGAGTGACAACAAAA+GGG - chr8_2:63509938-63509957 None:intergenic 30.0%
AAATCATGAGTGACAACAAA+AGG - chr8_2:63509939-63509958 None:intergenic 30.0%
TATCACTATCTAATCACTCA+TGG + chr8_2:63510118-63510137 Msa1261200:three_prime_UTR 30.0%
CCCAAATATCATAAAAGTCT+TGG - chr8_2:63510207-63510226 None:intergenic 30.0%
TGTAACATGAGAAATCAACA+AGG - chr8_2:63510327-63510346 None:intergenic 30.0%
! TAGGATGATCAGTACTTTTA+CGG + chr8_2:63510396-63510415 Msa1261200:three_prime_UTR 30.0%
!! TTTCTAGCTTCTTTCATTGA+AGG - chr8_2:63510517-63510536 None:intergenic 30.0%
CATACTAAATAGCTCATCAA+TGG - chr8_2:63510566-63510585 None:intergenic 30.0%
TATATCTTTAGGCTTTACTG+TGG - chr8_2:63510590-63510609 None:intergenic 30.0%
ACAGTAAAGCCTAAAGATAT+AGG + chr8_2:63510589-63510608 Msa1261200:three_prime_UTR 30.0%
AATATAAAGAGCTACAACCT+AGG + chr8_2:63510694-63510713 Msa1261200:three_prime_UTR 30.0%
TGGAGAATATCACATTGAAT+TGG + chr8_2:63510809-63510828 Msa1261200:three_prime_UTR 30.0%
!! ATTGGTATTTTGGAAACGAT+CGG + chr8_2:63510827-63510846 Msa1261200:three_prime_UTR 30.0%
AAAATACCAATTGATCACCA+CGG + chr8_2:63510933-63510952 Msa1261200:three_prime_UTR 30.0%
TACCTTGTCAAAAGATCTTA+TGG + chr8_2:63511035-63511054 Msa1261200:three_prime_UTR 30.0%
AGCTTGAAATCAGGAATATA+AGG - chr8_2:63511186-63511205 None:intergenic 30.0%
! AGGAATTTTATTCTGCTTTC+TGG + chr8_2:63511663-63511682 Msa1261200:three_prime_UTR 30.0%
! CAAGGTACAATTTTGTGAAC+TGG + chr8_2:63509516-63509535 Msa1261200:CDS 35.0%
AAATTGGAAAACATGGGAAG+AGG - chr8_2:63509565-63509584 None:intergenic 35.0%
! GTTACTGCAAATGGATCTTT+TGG + chr8_2:63509846-63509865 Msa1261200:intron 35.0%
AACAGGGCAAAAATGACAAA+TGG + chr8_2:63510007-63510026 Msa1261200:intron 35.0%
ACTTGATGCCAAATTCATCT+AGG + chr8_2:63510044-63510063 Msa1261200:three_prime_UTR 35.0%
AAAGTCTTGGATGGAAAAAG+TGG - chr8_2:63510194-63510213 None:intergenic 35.0%
! GGAGCATCTACAATACAATT+TGG + chr8_2:63510225-63510244 Msa1261200:three_prime_UTR 35.0%
GTGCACGAAAAGGAAATTTA+TGG + chr8_2:63510366-63510385 Msa1261200:three_prime_UTR 35.0%
GGAAATTTATGGATCAGTCT+AGG + chr8_2:63510377-63510396 Msa1261200:three_prime_UTR 35.0%
TCTTTCATTGAAGGATTAGG+AGG - chr8_2:63510508-63510527 None:intergenic 35.0%
GCTTCTTTCATTGAAGGATT+AGG - chr8_2:63510511-63510530 None:intergenic 35.0%
ACAATCATTGAAGATAGCGA+CGG - chr8_2:63510652-63510671 None:intergenic 35.0%
TCAATCATTACAAGCTTCGA+GGG + chr8_2:63510671-63510690 Msa1261200:three_prime_UTR 35.0%
CAATGCATAGGAATTAGGAT+TGG - chr8_2:63510779-63510798 None:intergenic 35.0%
CAATCCTAATTCCTATGCAT+TGG + chr8_2:63510777-63510796 Msa1261200:three_prime_UTR 35.0%
ATGACCAATGCATAGGAATT+AGG - chr8_2:63510784-63510803 None:intergenic 35.0%
AATTGTTTGTTTCGAATGGG+AGG + chr8_2:63510865-63510884 Msa1261200:three_prime_UTR 35.0%
!! TCTTCTGTCTGAGGTTTTAT+TGG - chr8_2:63510908-63510927 None:intergenic 35.0%
! TTTTGATCTTCTTCTGTCTG+AGG - chr8_2:63510917-63510936 None:intergenic 35.0%
! TGCCATAAGATCTTTTGACA+AGG - chr8_2:63511040-63511059 None:intergenic 35.0%
AACAGTAGTTGTTCTGATGT+TGG - chr8_2:63511117-63511136 None:intergenic 35.0%
! TCAAAAGCTAGCTTGAAATC+AGG - chr8_2:63511195-63511214 None:intergenic 35.0%
! AGGATGACACTTTATCGTTT+TGG + chr8_2:63511303-63511322 Msa1261200:three_prime_UTR 35.0%
CAGTTCACTTTGGTATGAAT+TGG + chr8_2:63511338-63511357 Msa1261200:three_prime_UTR 35.0%
TTAAGAAGGGAGATAGAACA+TGG + chr8_2:63511385-63511404 Msa1261200:three_prime_UTR 35.0%
AGAACATGGCAAATAGCATT+TGG + chr8_2:63511399-63511418 Msa1261200:three_prime_UTR 35.0%
AGTAGTTGTGTATCAGCATT+AGG + chr8_2:63511566-63511585 Msa1261200:three_prime_UTR 35.0%
!!! GTTTTTCGAGTTGAGGTTTT+AGG + chr8_2:63511643-63511662 Msa1261200:three_prime_UTR 35.0%
! CAAGGTACAATTTTGTGAAC+TGG + chr8_2:63509516-63509535 Msa1261200:CDS 35.0%
AAATTGGAAAACATGGGAAG+AGG - chr8_2:63509565-63509584 None:intergenic 35.0%
! GTTACTGCAAATGGATCTTT+TGG + chr8_2:63509846-63509865 Msa1261200:intron 35.0%
AACAGGGCAAAAATGACAAA+TGG + chr8_2:63510007-63510026 Msa1261200:intron 35.0%
ACTTGATGCCAAATTCATCT+AGG + chr8_2:63510044-63510063 Msa1261200:three_prime_UTR 35.0%
AAAGTCTTGGATGGAAAAAG+TGG - chr8_2:63510194-63510213 None:intergenic 35.0%
! GGAGCATCTACAATACAATT+TGG + chr8_2:63510225-63510244 Msa1261200:three_prime_UTR 35.0%
GTGCACGAAAAGGAAATTTA+TGG + chr8_2:63510366-63510385 Msa1261200:three_prime_UTR 35.0%
GGAAATTTATGGATCAGTCT+AGG + chr8_2:63510377-63510396 Msa1261200:three_prime_UTR 35.0%
TCTTTCATTGAAGGATTAGG+AGG - chr8_2:63510508-63510527 None:intergenic 35.0%
GCTTCTTTCATTGAAGGATT+AGG - chr8_2:63510511-63510530 None:intergenic 35.0%
ACAATCATTGAAGATAGCGA+CGG - chr8_2:63510652-63510671 None:intergenic 35.0%
TCAATCATTACAAGCTTCGA+GGG + chr8_2:63510671-63510690 Msa1261200:three_prime_UTR 35.0%
CAATGCATAGGAATTAGGAT+TGG - chr8_2:63510779-63510798 None:intergenic 35.0%
CAATCCTAATTCCTATGCAT+TGG + chr8_2:63510777-63510796 Msa1261200:three_prime_UTR 35.0%
ATGACCAATGCATAGGAATT+AGG - chr8_2:63510784-63510803 None:intergenic 35.0%
AATTGTTTGTTTCGAATGGG+AGG + chr8_2:63510865-63510884 Msa1261200:three_prime_UTR 35.0%
!! TCTTCTGTCTGAGGTTTTAT+TGG - chr8_2:63510908-63510927 None:intergenic 35.0%
! TTTTGATCTTCTTCTGTCTG+AGG - chr8_2:63510917-63510936 None:intergenic 35.0%
! TGCCATAAGATCTTTTGACA+AGG - chr8_2:63511040-63511059 None:intergenic 35.0%
AACAGTAGTTGTTCTGATGT+TGG - chr8_2:63511117-63511136 None:intergenic 35.0%
! TCAAAAGCTAGCTTGAAATC+AGG - chr8_2:63511195-63511214 None:intergenic 35.0%
! AGGATGACACTTTATCGTTT+TGG + chr8_2:63511303-63511322 Msa1261200:three_prime_UTR 35.0%
CAGTTCACTTTGGTATGAAT+TGG + chr8_2:63511338-63511357 Msa1261200:three_prime_UTR 35.0%
TTAAGAAGGGAGATAGAACA+TGG + chr8_2:63511385-63511404 Msa1261200:three_prime_UTR 35.0%
AGAACATGGCAAATAGCATT+TGG + chr8_2:63511399-63511418 Msa1261200:three_prime_UTR 35.0%
AGTAGTTGTGTATCAGCATT+AGG + chr8_2:63511566-63511585 Msa1261200:three_prime_UTR 35.0%
!!! GTTTTTCGAGTTGAGGTTTT+AGG + chr8_2:63511643-63511662 Msa1261200:three_prime_UTR 35.0%
TCTCTCTTGGAAGACATTTC+TGG + chr8_2:63509465-63509484 Msa1261200:CDS 40.0%
AATCCACAATGCATTCGTTC+AGG - chr8_2:63509646-63509665 None:intergenic 40.0%
! ACTGCAAATGGATCTTTTGG+AGG + chr8_2:63509849-63509868 Msa1261200:intron 40.0%
! CTGCAAATGGATCTTTTGGA+GGG + chr8_2:63509850-63509869 Msa1261200:intron 40.0%
GGCAAGTTCCTAGATGAATT+TGG - chr8_2:63510055-63510074 None:intergenic 40.0%
TCAAAAAGTAAAGCGTGGAC+AGG - chr8_2:63510285-63510304 None:intergenic 40.0%
ACGAGTCAAAAAGTAAAGCG+TGG - chr8_2:63510290-63510309 None:intergenic 40.0%
GAGAAATCAACAAGGTACAC+CGG - chr8_2:63510319-63510338 None:intergenic 40.0%
! GATGATCAGTACTTTTACGG+AGG + chr8_2:63510399-63510418 Msa1261200:three_prime_UTR 40.0%
GCGAAAGATTCTTGAGAGAT+CGG + chr8_2:63510438-63510457 Msa1261200:three_prime_UTR 40.0%
CGAAAGATTCTTGAGAGATC+GGG + chr8_2:63510439-63510458 Msa1261200:three_prime_UTR 40.0%
GGAATCTACTTATCTTCCAG+AGG + chr8_2:63510468-63510487 Msa1261200:three_prime_UTR 40.0%
GTCAATCATTACAAGCTTCG+AGG + chr8_2:63510670-63510689 Msa1261200:three_prime_UTR 40.0%
ATAAAGAGCTACAACCTAGG+TGG + chr8_2:63510697-63510716 Msa1261200:three_prime_UTR 40.0%
TAAAGAGCTACAACCTAGGT+GGG + chr8_2:63510698-63510717 Msa1261200:three_prime_UTR 40.0%
TCTTGCTAAAGATCTTCTCC+AGG + chr8_2:63510753-63510772 Msa1261200:three_prime_UTR 40.0%
CATGCTAATGACCAATGCAT+AGG - chr8_2:63510791-63510810 None:intergenic 40.0%
! CTATGCATTGGTCATTAGCA+TGG + chr8_2:63510789-63510808 Msa1261200:three_prime_UTR 40.0%
AAAGATCTTATGGCAGTTGC+AGG + chr8_2:63511045-63511064 Msa1261200:three_prime_UTR 40.0%
ACTACTGTTCTTCACCACAT+TGG + chr8_2:63511128-63511147 Msa1261200:three_prime_UTR 40.0%
! TGTTCTTCACCACATTGGTT+GGG + chr8_2:63511133-63511152 Msa1261200:three_prime_UTR 40.0%
AAGTTTCTTCCCAACCAATG+TGG - chr8_2:63511145-63511164 None:intergenic 40.0%
! GAACATTTTTGCATCCATGC+CGG + chr8_2:63511213-63511232 Msa1261200:three_prime_UTR 40.0%
AAAACTTGCAGCTATCTCCA+TGG + chr8_2:63511265-63511284 Msa1261200:three_prime_UTR 40.0%
! CGATAAAGTGTCATCCTTGA+TGG - chr8_2:63511300-63511319 None:intergenic 40.0%
ACACATCTAGCAGTTCACTT+TGG + chr8_2:63511328-63511347 Msa1261200:three_prime_UTR 40.0%
AGCCAAAGGGAGAATTAAGA+AGG + chr8_2:63511371-63511390 Msa1261200:three_prime_UTR 40.0%
GCCAAAGGGAGAATTAAGAA+GGG + chr8_2:63511372-63511391 Msa1261200:three_prime_UTR 40.0%
TCCCTTCTTAATTCTCCCTT+TGG - chr8_2:63511376-63511395 None:intergenic 40.0%
! TGGCAAATAGCATTTGGTTC+TGG + chr8_2:63511405-63511424 Msa1261200:three_prime_UTR 40.0%
GGTCAATCTCATCTATCCAA+GGG - chr8_2:63511494-63511513 None:intergenic 40.0%
TGGTCAATCTCATCTATCCA+AGG - chr8_2:63511495-63511514 None:intergenic 40.0%
TTGGAACATCAACAGGAAAC+TGG - chr8_2:63511515-63511534 None:intergenic 40.0%
GTTTCCTGTTGATGTTCCAA+AGG + chr8_2:63511515-63511534 Msa1261200:three_prime_UTR 40.0%
!! GATACCTTTGGAACATCAAC+AGG - chr8_2:63511522-63511541 None:intergenic 40.0%
GTTCAGATGGTAGATACCTT+TGG - chr8_2:63511534-63511553 None:intergenic 40.0%
TTACAATCTCGTCGTTCAGA+TGG - chr8_2:63511547-63511566 None:intergenic 40.0%
AGTTGTGTATCAGCATTAGG+TGG + chr8_2:63511569-63511588 Msa1261200:three_prime_UTR 40.0%
TCTCTCTTGGAAGACATTTC+TGG + chr8_2:63509465-63509484 Msa1261200:CDS 40.0%
AATCCACAATGCATTCGTTC+AGG - chr8_2:63509646-63509665 None:intergenic 40.0%
! ACTGCAAATGGATCTTTTGG+AGG + chr8_2:63509849-63509868 Msa1261200:intron 40.0%
! CTGCAAATGGATCTTTTGGA+GGG + chr8_2:63509850-63509869 Msa1261200:intron 40.0%
GGCAAGTTCCTAGATGAATT+TGG - chr8_2:63510055-63510074 None:intergenic 40.0%
TCAAAAAGTAAAGCGTGGAC+AGG - chr8_2:63510285-63510304 None:intergenic 40.0%
ACGAGTCAAAAAGTAAAGCG+TGG - chr8_2:63510290-63510309 None:intergenic 40.0%
GAGAAATCAACAAGGTACAC+CGG - chr8_2:63510319-63510338 None:intergenic 40.0%
! GATGATCAGTACTTTTACGG+AGG + chr8_2:63510399-63510418 Msa1261200:three_prime_UTR 40.0%
GCGAAAGATTCTTGAGAGAT+CGG + chr8_2:63510438-63510457 Msa1261200:three_prime_UTR 40.0%
CGAAAGATTCTTGAGAGATC+GGG + chr8_2:63510439-63510458 Msa1261200:three_prime_UTR 40.0%
GGAATCTACTTATCTTCCAG+AGG + chr8_2:63510468-63510487 Msa1261200:three_prime_UTR 40.0%
GTCAATCATTACAAGCTTCG+AGG + chr8_2:63510670-63510689 Msa1261200:three_prime_UTR 40.0%
ATAAAGAGCTACAACCTAGG+TGG + chr8_2:63510697-63510716 Msa1261200:three_prime_UTR 40.0%
TAAAGAGCTACAACCTAGGT+GGG + chr8_2:63510698-63510717 Msa1261200:three_prime_UTR 40.0%
TCTTGCTAAAGATCTTCTCC+AGG + chr8_2:63510753-63510772 Msa1261200:three_prime_UTR 40.0%
CATGCTAATGACCAATGCAT+AGG - chr8_2:63510791-63510810 None:intergenic 40.0%
! CTATGCATTGGTCATTAGCA+TGG + chr8_2:63510789-63510808 Msa1261200:three_prime_UTR 40.0%
AAAGATCTTATGGCAGTTGC+AGG + chr8_2:63511045-63511064 Msa1261200:three_prime_UTR 40.0%
ACTACTGTTCTTCACCACAT+TGG + chr8_2:63511128-63511147 Msa1261200:three_prime_UTR 40.0%
! TGTTCTTCACCACATTGGTT+GGG + chr8_2:63511133-63511152 Msa1261200:three_prime_UTR 40.0%
AAGTTTCTTCCCAACCAATG+TGG - chr8_2:63511145-63511164 None:intergenic 40.0%
! GAACATTTTTGCATCCATGC+CGG + chr8_2:63511213-63511232 Msa1261200:three_prime_UTR 40.0%
AAAACTTGCAGCTATCTCCA+TGG + chr8_2:63511265-63511284 Msa1261200:three_prime_UTR 40.0%
! CGATAAAGTGTCATCCTTGA+TGG - chr8_2:63511300-63511319 None:intergenic 40.0%
ACACATCTAGCAGTTCACTT+TGG + chr8_2:63511328-63511347 Msa1261200:three_prime_UTR 40.0%
AGCCAAAGGGAGAATTAAGA+AGG + chr8_2:63511371-63511390 Msa1261200:three_prime_UTR 40.0%
GCCAAAGGGAGAATTAAGAA+GGG + chr8_2:63511372-63511391 Msa1261200:three_prime_UTR 40.0%
TCCCTTCTTAATTCTCCCTT+TGG - chr8_2:63511376-63511395 None:intergenic 40.0%
! TGGCAAATAGCATTTGGTTC+TGG + chr8_2:63511405-63511424 Msa1261200:three_prime_UTR 40.0%
GGTCAATCTCATCTATCCAA+GGG - chr8_2:63511494-63511513 None:intergenic 40.0%
TGGTCAATCTCATCTATCCA+AGG - chr8_2:63511495-63511514 None:intergenic 40.0%
TTGGAACATCAACAGGAAAC+TGG - chr8_2:63511515-63511534 None:intergenic 40.0%
GTTTCCTGTTGATGTTCCAA+AGG + chr8_2:63511515-63511534 Msa1261200:three_prime_UTR 40.0%
!! GATACCTTTGGAACATCAAC+AGG - chr8_2:63511522-63511541 None:intergenic 40.0%
GTTCAGATGGTAGATACCTT+TGG - chr8_2:63511534-63511553 None:intergenic 40.0%
TTACAATCTCGTCGTTCAGA+TGG - chr8_2:63511547-63511566 None:intergenic 40.0%
AGTTGTGTATCAGCATTAGG+TGG + chr8_2:63511569-63511588 Msa1261200:three_prime_UTR 40.0%
!! TTGGAAGACATTTCTGGCAC+TGG + chr8_2:63509471-63509490 Msa1261200:CDS 45.0%
!! TGGAAGACATTTCTGGCACT+GGG + chr8_2:63509472-63509491 Msa1261200:CDS 45.0%
CTTCCTGAACGAATGCATTG+TGG + chr8_2:63509640-63509659 Msa1261200:CDS 45.0%
AAAGCGTGGACAGGAAAACA+AGG - chr8_2:63510276-63510295 None:intergenic 45.0%
!! CTTTTTGACTCGTCCGAAAC+CGG + chr8_2:63510297-63510316 Msa1261200:three_prime_UTR 45.0%
!! TCAACAAGGTACACCGGTTT+CGG - chr8_2:63510313-63510332 None:intergenic 45.0%
AATCGCGTAAGTGCACGAAA+AGG + chr8_2:63510356-63510375 Msa1261200:three_prime_UTR 45.0%
ATTCTTGAGAGATCGGGACT+CGG + chr8_2:63510445-63510464 Msa1261200:three_prime_UTR 45.0%
GGAAAGTTAAGAACAGCCTC+TGG - chr8_2:63510487-63510506 None:intergenic 45.0%
GAAGCTGAGACTGTGATGTT+CGG + chr8_2:63510538-63510557 Msa1261200:three_prime_UTR 45.0%
TTGAAGATAGCGACGGAGTT+GGG - chr8_2:63510645-63510664 None:intergenic 45.0%
ATTGAAGATAGCGACGGAGT+TGG - chr8_2:63510646-63510665 None:intergenic 45.0%
!! CATAGGAATTAGGATTGGCC+TGG - chr8_2:63510774-63510793 None:intergenic 45.0%
ACCCAAGAAGAAGATGCCAA+TGG + chr8_2:63511000-63511019 Msa1261200:three_prime_UTR 45.0%
GCCATTGGCATCTTCTTCTT+GGG - chr8_2:63511004-63511023 None:intergenic 45.0%
TGCCATTGGCATCTTCTTCT+TGG - chr8_2:63511005-63511024 None:intergenic 45.0%
GAAGATGCCAATGGCAAGAT+TGG + chr8_2:63511009-63511028 Msa1261200:three_prime_UTR 45.0%
GGTAACACCAATCTTGCCAT+TGG - chr8_2:63511019-63511038 None:intergenic 45.0%
! TCTGATGTTGGAAGTACGAG+AGG - chr8_2:63511105-63511124 None:intergenic 45.0%
CTGTTCTTCACCACATTGGT+TGG + chr8_2:63511132-63511151 Msa1261200:three_prime_UTR 45.0%
ATCCAAAACAGCTCTACCTC+CGG - chr8_2:63511235-63511254 None:intergenic 45.0%
TTGGCTTACACAGAAGCCAA+AGG + chr8_2:63511357-63511376 Msa1261200:three_prime_UTR 45.0%
TGGCTTACACAGAAGCCAAA+GGG + chr8_2:63511358-63511377 Msa1261200:three_prime_UTR 45.0%
TCAAGTGTAACAGTGCAGTG+TGG + chr8_2:63511430-63511449 Msa1261200:three_prime_UTR 45.0%
! AAGGGCTTTTCTCCTTCACA+GGG - chr8_2:63511476-63511495 None:intergenic 45.0%
CAGCATTAGGTGGTAGTTGT+TGG + chr8_2:63511579-63511598 Msa1261200:three_prime_UTR 45.0%
!!! CGTGACTGTTTTTCGAGTTG+AGG + chr8_2:63511636-63511655 Msa1261200:three_prime_UTR 45.0%
! TCTGCTTTCTGGTGTACAAG+TGG + chr8_2:63511674-63511693 Msa1261200:three_prime_UTR 45.0%
! CTTTCTGGTGTACAAGTGGT+GGG + chr8_2:63511678-63511697 Msa1261200:three_prime_UTR 45.0%
!! ACAAGTGGTGGGTCTAGTTT+AGG + chr8_2:63511689-63511708 Msa1261200:three_prime_UTR 45.0%
!! CAAGTGGTGGGTCTAGTTTA+GGG + chr8_2:63511690-63511709 Msa1261200:three_prime_UTR 45.0%
!! AAGTGGTGGGTCTAGTTTAG+GGG + chr8_2:63511691-63511710 Msa1261200:three_prime_UTR 45.0%
!! TTGGAAGACATTTCTGGCAC+TGG + chr8_2:63509471-63509490 Msa1261200:CDS 45.0%
!! TGGAAGACATTTCTGGCACT+GGG + chr8_2:63509472-63509491 Msa1261200:CDS 45.0%
CTTCCTGAACGAATGCATTG+TGG + chr8_2:63509640-63509659 Msa1261200:CDS 45.0%
AAAGCGTGGACAGGAAAACA+AGG - chr8_2:63510276-63510295 None:intergenic 45.0%
!! CTTTTTGACTCGTCCGAAAC+CGG + chr8_2:63510297-63510316 Msa1261200:three_prime_UTR 45.0%
!! TCAACAAGGTACACCGGTTT+CGG - chr8_2:63510313-63510332 None:intergenic 45.0%
AATCGCGTAAGTGCACGAAA+AGG + chr8_2:63510356-63510375 Msa1261200:three_prime_UTR 45.0%
ATTCTTGAGAGATCGGGACT+CGG + chr8_2:63510445-63510464 Msa1261200:three_prime_UTR 45.0%
GGAAAGTTAAGAACAGCCTC+TGG - chr8_2:63510487-63510506 None:intergenic 45.0%
GAAGCTGAGACTGTGATGTT+CGG + chr8_2:63510538-63510557 Msa1261200:three_prime_UTR 45.0%
TTGAAGATAGCGACGGAGTT+GGG - chr8_2:63510645-63510664 None:intergenic 45.0%
ATTGAAGATAGCGACGGAGT+TGG - chr8_2:63510646-63510665 None:intergenic 45.0%
!! CATAGGAATTAGGATTGGCC+TGG - chr8_2:63510774-63510793 None:intergenic 45.0%
ACCCAAGAAGAAGATGCCAA+TGG + chr8_2:63511000-63511019 Msa1261200:three_prime_UTR 45.0%
GCCATTGGCATCTTCTTCTT+GGG - chr8_2:63511004-63511023 None:intergenic 45.0%
TGCCATTGGCATCTTCTTCT+TGG - chr8_2:63511005-63511024 None:intergenic 45.0%
GAAGATGCCAATGGCAAGAT+TGG + chr8_2:63511009-63511028 Msa1261200:three_prime_UTR 45.0%
GGTAACACCAATCTTGCCAT+TGG - chr8_2:63511019-63511038 None:intergenic 45.0%
! TCTGATGTTGGAAGTACGAG+AGG - chr8_2:63511105-63511124 None:intergenic 45.0%
CTGTTCTTCACCACATTGGT+TGG + chr8_2:63511132-63511151 Msa1261200:three_prime_UTR 45.0%
ATCCAAAACAGCTCTACCTC+CGG - chr8_2:63511235-63511254 None:intergenic 45.0%
TTGGCTTACACAGAAGCCAA+AGG + chr8_2:63511357-63511376 Msa1261200:three_prime_UTR 45.0%
TGGCTTACACAGAAGCCAAA+GGG + chr8_2:63511358-63511377 Msa1261200:three_prime_UTR 45.0%
TCAAGTGTAACAGTGCAGTG+TGG + chr8_2:63511430-63511449 Msa1261200:three_prime_UTR 45.0%
! AAGGGCTTTTCTCCTTCACA+GGG - chr8_2:63511476-63511495 None:intergenic 45.0%
CAGCATTAGGTGGTAGTTGT+TGG + chr8_2:63511579-63511598 Msa1261200:three_prime_UTR 45.0%
!!! CGTGACTGTTTTTCGAGTTG+AGG + chr8_2:63511636-63511655 Msa1261200:three_prime_UTR 45.0%
! TCTGCTTTCTGGTGTACAAG+TGG + chr8_2:63511674-63511693 Msa1261200:three_prime_UTR 45.0%
! CTTTCTGGTGTACAAGTGGT+GGG + chr8_2:63511678-63511697 Msa1261200:three_prime_UTR 45.0%
!! ACAAGTGGTGGGTCTAGTTT+AGG + chr8_2:63511689-63511708 Msa1261200:three_prime_UTR 45.0%
!! CAAGTGGTGGGTCTAGTTTA+GGG + chr8_2:63511690-63511709 Msa1261200:three_prime_UTR 45.0%
!! AAGTGGTGGGTCTAGTTTAG+GGG + chr8_2:63511691-63511710 Msa1261200:three_prime_UTR 45.0%
CACACACACTCTCTCTCTCT+TGG + chr8_2:63509452-63509471 Msa1261200:CDS 50.0%
!! ATTTCTGGCACTGGGATCTC+TGG + chr8_2:63509480-63509499 Msa1261200:CDS 50.0%
!! TCTGGTGGGTTTGGTCTTCA+AGG + chr8_2:63509498-63509517 Msa1261200:CDS 50.0%
CCACAAGCGGGGAAAGAAAA+AGG - chr8_2:63510150-63510169 None:intergenic 50.0%
! CCTTTTTCTTTCCCCGCTTG+TGG + chr8_2:63510147-63510166 Msa1261200:three_prime_UTR 50.0%
AGCAATCAACACCACAAGCG+GGG - chr8_2:63510161-63510180 None:intergenic 50.0%
CAGCAATCAACACCACAAGC+GGG - chr8_2:63510162-63510181 None:intergenic 50.0%
GCAGCAATCAACACCACAAG+CGG - chr8_2:63510163-63510182 None:intergenic 50.0%
GTGCACTTACGCGATTCTTC+AGG - chr8_2:63510352-63510371 None:intergenic 50.0%
TTCTTGAGAGATCGGGACTC+GGG + chr8_2:63510446-63510465 Msa1261200:three_prime_UTR 50.0%
AGCTACAACCTAGGTGGGAT+GGG + chr8_2:63510703-63510722 Msa1261200:three_prime_UTR 50.0%
TGCGAACCGTGGTGATCAAT+TGG - chr8_2:63510942-63510961 None:intergenic 50.0%
! CATTTTTGCATCCATGCCGG+AGG + chr8_2:63511216-63511235 Msa1261200:three_prime_UTR 50.0%
GCAGCTATCTCCATGGCATA+TGG + chr8_2:63511272-63511291 Msa1261200:three_prime_UTR 50.0%
! CTTGATGGCTCCATATGCCA+TGG - chr8_2:63511285-63511304 None:intergenic 50.0%
CATGGCATATGGAGCCATCA+AGG + chr8_2:63511283-63511302 Msa1261200:three_prime_UTR 50.0%
GTGTAACAGTGCAGTGTGGA+AGG + chr8_2:63511434-63511453 Msa1261200:three_prime_UTR 50.0%
CAGGACAATCAACCCTGTGA+AGG + chr8_2:63511461-63511480 Msa1261200:three_prime_UTR 50.0%
! CAAGGGCTTTTCTCCTTCAC+AGG - chr8_2:63511477-63511496 None:intergenic 50.0%
CTGTGAAGGAGAAAAGCCCT+TGG + chr8_2:63511475-63511494 Msa1261200:three_prime_UTR 50.0%
! GCTTTCTGGTGTACAAGTGG+TGG + chr8_2:63511677-63511696 Msa1261200:three_prime_UTR 50.0%
CACACACACTCTCTCTCTCT+TGG + chr8_2:63509452-63509471 Msa1261200:CDS 50.0%
!! ATTTCTGGCACTGGGATCTC+TGG + chr8_2:63509480-63509499 Msa1261200:CDS 50.0%
!! TCTGGTGGGTTTGGTCTTCA+AGG + chr8_2:63509498-63509517 Msa1261200:CDS 50.0%
CCACAAGCGGGGAAAGAAAA+AGG - chr8_2:63510150-63510169 None:intergenic 50.0%
! CCTTTTTCTTTCCCCGCTTG+TGG + chr8_2:63510147-63510166 Msa1261200:three_prime_UTR 50.0%
AGCAATCAACACCACAAGCG+GGG - chr8_2:63510161-63510180 None:intergenic 50.0%
CAGCAATCAACACCACAAGC+GGG - chr8_2:63510162-63510181 None:intergenic 50.0%
GCAGCAATCAACACCACAAG+CGG - chr8_2:63510163-63510182 None:intergenic 50.0%
GTGCACTTACGCGATTCTTC+AGG - chr8_2:63510352-63510371 None:intergenic 50.0%
TTCTTGAGAGATCGGGACTC+GGG + chr8_2:63510446-63510465 Msa1261200:three_prime_UTR 50.0%
AGCTACAACCTAGGTGGGAT+GGG + chr8_2:63510703-63510722 Msa1261200:three_prime_UTR 50.0%
TGCGAACCGTGGTGATCAAT+TGG - chr8_2:63510942-63510961 None:intergenic 50.0%
! CATTTTTGCATCCATGCCGG+AGG + chr8_2:63511216-63511235 Msa1261200:three_prime_UTR 50.0%
GCAGCTATCTCCATGGCATA+TGG + chr8_2:63511272-63511291 Msa1261200:three_prime_UTR 50.0%
! CTTGATGGCTCCATATGCCA+TGG - chr8_2:63511285-63511304 None:intergenic 50.0%
CATGGCATATGGAGCCATCA+AGG + chr8_2:63511283-63511302 Msa1261200:three_prime_UTR 50.0%
GTGTAACAGTGCAGTGTGGA+AGG + chr8_2:63511434-63511453 Msa1261200:three_prime_UTR 50.0%
CAGGACAATCAACCCTGTGA+AGG + chr8_2:63511461-63511480 Msa1261200:three_prime_UTR 50.0%
! CAAGGGCTTTTCTCCTTCAC+AGG - chr8_2:63511477-63511496 None:intergenic 50.0%
CTGTGAAGGAGAAAAGCCCT+TGG + chr8_2:63511475-63511494 Msa1261200:three_prime_UTR 50.0%
! GCTTTCTGGTGTACAAGTGG+TGG + chr8_2:63511677-63511696 Msa1261200:three_prime_UTR 50.0%
!! ACTGGGATCTCTGGTGGGTT+TGG + chr8_2:63509489-63509508 Msa1261200:CDS 55.0%
TCTTGAGAGATCGGGACTCG+GGG + chr8_2:63510447-63510466 Msa1261200:three_prime_UTR 55.0%
GAGCTACAACCTAGGTGGGA+TGG + chr8_2:63510702-63510721 Msa1261200:three_prime_UTR 55.0%
GTTTCGAATGGGAGGAGCTG+TGG + chr8_2:63510873-63510892 Msa1261200:three_prime_UTR 55.0%
CACCACGGTTCGCACTAACA+AGG + chr8_2:63510948-63510967 Msa1261200:three_prime_UTR 55.0%
!! AGCCTTGTTAGTGCGAACCG+TGG - chr8_2:63510953-63510972 None:intergenic 55.0%
AAACAGCTCTACCTCCGGCA+TGG - chr8_2:63511230-63511249 None:intergenic 55.0%
! TGCCGGAGGTAGAGCTGTTT+TGG + chr8_2:63511230-63511249 Msa1261200:three_prime_UTR 55.0%
!! ACTGGGATCTCTGGTGGGTT+TGG + chr8_2:63509489-63509508 Msa1261200:CDS 55.0%
TCTTGAGAGATCGGGACTCG+GGG + chr8_2:63510447-63510466 Msa1261200:three_prime_UTR 55.0%
GAGCTACAACCTAGGTGGGA+TGG + chr8_2:63510702-63510721 Msa1261200:three_prime_UTR 55.0%
GTTTCGAATGGGAGGAGCTG+TGG + chr8_2:63510873-63510892 Msa1261200:three_prime_UTR 55.0%
CACCACGGTTCGCACTAACA+AGG + chr8_2:63510948-63510967 Msa1261200:three_prime_UTR 55.0%
!! AGCCTTGTTAGTGCGAACCG+TGG - chr8_2:63510953-63510972 None:intergenic 55.0%
AAACAGCTCTACCTCCGGCA+TGG - chr8_2:63511230-63511249 None:intergenic 55.0%
! TGCCGGAGGTAGAGCTGTTT+TGG + chr8_2:63511230-63511249 Msa1261200:three_prime_UTR 55.0%
! TCTGGCACTGGGATCTCTGG+TGG + chr8_2:63509483-63509502 Msa1261200:CDS 60.0%
! CTGGCACTGGGATCTCTGGT+GGG + chr8_2:63509484-63509503 Msa1261200:CDS 60.0%
CACTGCAACCCATCCCACCT+AGG - chr8_2:63510714-63510733 None:intergenic 60.0%
!! AGGTGGGATGGGTTGCAGTG+CGG + chr8_2:63510714-63510733 Msa1261200:three_prime_UTR 60.0%
GTGCAGTGTGGAAGGCTCTC+AGG + chr8_2:63511442-63511461 Msa1261200:three_prime_UTR 60.0%
! TCTGGCACTGGGATCTCTGG+TGG + chr8_2:63509483-63509502 Msa1261200:CDS 60.0%
! CTGGCACTGGGATCTCTGGT+GGG + chr8_2:63509484-63509503 Msa1261200:CDS 60.0%
CACTGCAACCCATCCCACCT+AGG - chr8_2:63510714-63510733 None:intergenic 60.0%
!! AGGTGGGATGGGTTGCAGTG+CGG + chr8_2:63510714-63510733 Msa1261200:three_prime_UTR 60.0%
GTGCAGTGTGGAAGGCTCTC+AGG + chr8_2:63511442-63511461 Msa1261200:three_prime_UTR 60.0%
!! GGTGGGATGGGTTGCAGTGC+GGG + chr8_2:63510715-63510734 Msa1261200:three_prime_UTR 65.0%
!! GTGGGATGGGTTGCAGTGCG+GGG + chr8_2:63510716-63510735 Msa1261200:three_prime_UTR 65.0%
!! GGTGGGATGGGTTGCAGTGC+GGG + chr8_2:63510715-63510734 Msa1261200:three_prime_UTR 65.0%
!! GTGGGATGGGTTGCAGTGCG+GGG + chr8_2:63510716-63510735 Msa1261200:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 63509452 63511744 63509452 ID=Msa1261200;Name=Msa1261200
chr8_2 mRNA 63509452 63511744 63509452 ID=Msa1261200-mRNA-1;Parent=Msa1261200;Name=Msa1261200-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|0|0.5|1|0|0|2|1712|81
chr8_2 exon 63509452 63509676 63509452 ID=Msa1261200-mRNA-1:exon:20317;Parent=Msa1261200-mRNA-1
chr8_2 exon 63510012 63511744 63510012 ID=Msa1261200-mRNA-1:exon:20318;Parent=Msa1261200-mRNA-1
chr8_2 CDS 63509452 63509676 63509452 ID=Msa1261200-mRNA-1:cds;Parent=Msa1261200-mRNA-1
chr8_2 CDS 63510012 63510032 63510012 ID=Msa1261200-mRNA-1:cds;Parent=Msa1261200-mRNA-1
chr8_2 three_prime_UTR 63510033 63511744 63510033 ID=Msa1261200-mRNA-1:three_prime_utr;Parent=Msa1261200-mRNA-1
Gene Sequence

>Msa1261200

CACACACACTCTCTCTCTCTTGGAAGACATTTCTGGCACTGGGATCTCTGGTGGGTTTGGTCTTCAAGGTACAATTTTGTGAACTGGGTTTTGTTTCACATCAACATTAACCTCTTCCCATGTTTTCCAATTTTTCATTACTCACTGCATGCTTCTTCTTTGTTTCACTTGTATCTATCTGCAATCTTCTTCCTGAACGAATGCATTGTGGATTTATACACAAAGGGCAAAAATGACAAATGGTAG
Protein sequence

>Msa1261200

HTHSLSLGRHFWHWDLWWVWSSRYNFVNWVLFHININLFPCFPIFHYSLHASSLFHLYLSAIFFLNECIVDLYTKGKNDKW*