AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0292400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0292400 MtrunA17_Chr2g0313061 93.963 381 22 1 64 443 1 381 0.0 642
Msa0292400 MtrunA17_Chr8g0336501 99.270 137 1 0 307 443 1 137 4.05e-95 282
Msa0292400 MtrunA17_Chr4g0030031 32.353 204 110 6 244 439 434 617 7.31e-15 77.0
Msa0292400 MtrunA17_Chr1g0181611 29.442 197 115 6 257 442 403 586 7.65e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0292400 AT1G17140.1 48.303 383 156 11 64 443 1 344 2.89e-87 270
Msa0292400 AT1G17140.2 48.303 383 156 11 64 443 1 344 2.89e-87 270
Msa0292400 AT1G78430.1 48.303 383 132 11 65 443 4 324 3.64e-82 256
Msa0292400 AT5G60210.5 27.523 327 179 11 129 439 301 585 5.00e-14 74.7
Msa0292400 AT5G60210.3 27.523 327 179 11 129 439 301 585 5.00e-14 74.7
Msa0292400 AT5G60210.2 27.829 327 178 12 129 439 277 561 7.93e-14 73.9
Msa0292400 AT5G60210.4 27.829 327 178 12 129 439 277 561 7.93e-14 73.9
Msa0292400 AT5G60210.1 27.829 327 178 12 129 439 277 561 7.93e-14 73.9
Msa0292400 AT5G60210.6 27.829 327 178 12 129 439 277 561 7.93e-14 73.9
Msa0292400 AT3G53350.3 25.393 382 191 10 63 367 2 366 1.48e-12 69.3
Msa0292400 AT3G53350.2 25.393 382 191 10 63 367 2 366 1.48e-12 69.3
Msa0292400 AT3G53350.8 24.742 388 200 9 55 367 7 377 7.52e-12 67.4
Msa0292400 AT3G53350.7 25.131 382 194 11 63 367 2 368 1.76e-11 66.2
Msa0292400 AT3G53350.1 25.131 382 194 11 63 367 2 368 1.76e-11 66.2
Msa0292400 AT3G53350.5 25.131 382 194 11 63 367 2 368 1.76e-11 66.2
Msa0292400 AT2G37080.3 39.496 119 60 4 65 176 6 119 4.03e-11 65.5
Msa0292400 AT3G53350.4 25.000 372 189 9 71 367 23 379 9.24e-11 63.9
Msa0292400 AT3G53350.6 25.000 372 189 9 71 367 23 379 9.24e-11 63.9

Find 106 sgRNAs with CRISPR-Local

Find 404 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTAACCTTCTCGAGTTTA+AGG 0.110356 2_3:+41614876 Msa0292400:CDS
ATTCCACCTCCAATGGTATT+AGG 0.157870 2_3:+41614847 None:intergenic
TTAGAATGTTTGGTGATTTA+TGG 0.158925 2_3:+41621706 Msa0292400:CDS
TCCATTGAACCACACCTTTC+AGG 0.188017 2_3:-41621555 None:intergenic
GCTGCAGCTGCAGTGCTTGC+AGG 0.211780 2_3:+41621501 Msa0292400:CDS
CGGGACTCGCATTGCAGATT+TGG 0.237903 2_3:+41620798 Msa0292400:CDS
TTCCACCTCCAATGGTATTA+GGG 0.251017 2_3:+41614848 None:intergenic
TTGTTTCTGTTGTATTATAA+TGG 0.269451 2_3:+41621978 Msa0292400:three_prime_UTR
ACATAATAGTACACTCTTAA+TGG 0.283825 2_3:-41622001 None:intergenic
GAAGAAATTGAGTAAAGAAT+TGG 0.311524 2_3:+41621350 Msa0292400:CDS
ATTCATTCAGTTGATTCTTC+AGG 0.316287 2_3:-41621272 None:intergenic
TCTTCTGGTATTAGAATGTT+TGG 0.317878 2_3:+41621696 Msa0292400:CDS
GATGATCTGGATGATGGTTT+TGG 0.318666 2_3:+41621654 Msa0292400:CDS
GATCGTCGGTCTCCTAGTTT+TGG 0.320194 2_3:-41620730 None:intergenic
TCCTGGTATGGTTGATGATC+TGG 0.327726 2_3:+41621641 Msa0292400:CDS
CAACTTCTCATTCAACTTCT+CGG 0.328807 2_3:-41621391 None:intergenic
TTCTCTGGCTCTGATGTTGC+TGG 0.333734 2_3:-41621141 None:intergenic
TTTGGACTTCGTTCAGTAAC+CGG 0.349435 2_3:-41620712 None:intergenic
ACTTGAATTGACAGCGAGTT+TGG 0.350933 2_3:+41621761 Msa0292400:three_prime_UTR
AGTTCGAGGGAAGAGCTTAA+AGG 0.354460 2_3:+41614928 Msa0292400:CDS
AGCGTCGTTGAAATCAAGTT+TGG 0.357678 2_3:+41621203 Msa0292400:CDS
GTGGGTGCAGAAATCACTTT+TGG 0.358030 2_3:-41621740 None:intergenic
GATGTTGCTGGTTGAGTTTG+AGG 0.385163 2_3:-41621129 None:intergenic
TCCTCCACAAAAGGCTTCTC+TGG 0.388495 2_3:-41621156 None:intergenic
TAACATACATACCTTGATCT+TGG 0.405582 2_3:-41620329 None:intergenic
TCTAACCTTCTCGAGTTTAA+GGG 0.412308 2_3:+41614877 Msa0292400:CDS
CCCTTCACCTCAGTTGGAAA+AGG 0.423532 2_3:-41622091 None:intergenic
AAGAATTGGAAGCTAGTAAA+GGG 0.424711 2_3:+41621364 Msa0292400:CDS
GAAATCTGTGGAAGAAGAAA+AGG 0.430192 2_3:+41621413 Msa0292400:CDS
TGAAGTTCCTATCGAAAAGT+TGG 0.430569 2_3:+41621068 Msa0292400:CDS
TTCTGTCAAAAGTAATACTT+TGG 0.435261 2_3:+41621803 Msa0292400:three_prime_UTR
TCCTGAAAGGTGTGGTTCAA+TGG 0.435919 2_3:+41621554 Msa0292400:CDS
TTGATATGAGTGCTGCTGCT+AGG 0.438889 2_3:+41621529 Msa0292400:CDS
GCAGCTGCAGTGCTTGCAGG+AGG 0.450210 2_3:+41621504 Msa0292400:CDS
ATAGTTAAAATACTACTCAT+TGG 0.456410 2_3:-41621875 None:intergenic
AAAGAATTGGAAGCTAGTAA+AGG 0.459045 2_3:+41621363 Msa0292400:CDS
CCTTCACCTCAGTTGGAAAA+GGG 0.459069 2_3:-41622090 None:intergenic
GGTGATTTATGGAAGAAGAA+AGG 0.459584 2_3:+41621717 Msa0292400:CDS
CATGGATATGTAGGTTCTCC+TGG 0.462446 2_3:+41621624 Msa0292400:CDS
TCTTCGCTACGTCCGGTGGT+TGG 0.466024 2_3:-41614903 None:intergenic
TAAGAACCCTTCACCTCAGT+TGG 0.468013 2_3:-41622097 None:intergenic
AGTGTCAGCTCCTCCACAAA+AGG 0.476304 2_3:-41621165 None:intergenic
TATGCAAAATATTCTCATCA+AGG 0.483262 2_3:+41616586 Msa0292400:CDS
AATCAGAAATGAAGAAGCTA+AGG 0.488261 2_3:+41621445 Msa0292400:CDS
AAAACATGATGTATTTGAAA+AGG 0.489311 2_3:+41621104 Msa0292400:CDS
TGATATGAGTGCTGCTGCTA+GGG 0.490148 2_3:+41621530 Msa0292400:CDS
GAACTCTTCTTCGCTACGTC+CGG 0.492538 2_3:-41614910 None:intergenic
ACACCTGGTGGAAGGTATCA+TGG 0.495632 2_3:+41621606 Msa0292400:CDS
CATATCAAATGCCAAGATCA+AGG 0.498306 2_3:+41620318 Msa0292400:CDS
ATGGATAAGCACTTTGGCGG+TGG 0.498541 2_3:+41621573 Msa0292400:CDS
TCGGATTGAGTACCACCTCT+TGG 0.503758 2_3:-41620754 None:intergenic
CTTCTTCTGATTTACTGTCT+CGG 0.503831 2_3:-41620773 None:intergenic
ATGGTTGATGATCTGGATGA+TGG 0.513817 2_3:+41621648 Msa0292400:CDS
GGAAGGTATCATGGATATGT+AGG 0.515502 2_3:+41621615 Msa0292400:CDS
GAAGAGCTTAAAGGATTGTA+CGG 0.516084 2_3:+41614937 Msa0292400:CDS
AGTAAAAGCTGCTGAAACAA+AGG 0.517289 2_3:+41621305 Msa0292400:CDS
GTCGTTGAAATCAAGTTTGG+AGG 0.523652 2_3:+41621206 Msa0292400:CDS
GAAAGAACCCCTAATACCAT+TGG 0.530049 2_3:-41614856 None:intergenic
ATATGTAGGTTCTCCTGGTA+TGG 0.532614 2_3:+41621629 Msa0292400:CDS
CAGTAAATCAGAAGAAGCTC+GGG 0.538053 2_3:+41620779 Msa0292400:CDS
CTAACCTTCTCGAGTTTAAG+GGG 0.540353 2_3:+41614878 Msa0292400:CDS
GCAGATTTGGAATCACAGCT+TGG 0.551467 2_3:+41620811 Msa0292400:CDS
GCTGCTGAAACAAAGGAAGA+AGG 0.552537 2_3:+41621312 Msa0292400:CDS
ACAGTAAATCAGAAGAAGCT+CGG 0.553824 2_3:+41620778 Msa0292400:CDS
ACGTAGCGAAGAAGAGTTCG+AGG 0.555248 2_3:+41614914 Msa0292400:CDS
CAAGAGGTACTCATCAGCTT+CGG 0.558421 2_3:+41620650 Msa0292400:CDS
TCAATGGATAAGCACTTTGG+CGG 0.562568 2_3:+41621570 Msa0292400:CDS
TCCATCACATCATCATCGAC+CGG 0.578161 2_3:+41620693 Msa0292400:CDS
CTCTTCTTCGCTACGTCCGG+TGG 0.579580 2_3:-41614907 None:intergenic
AAACTCGCTGTCAATTCAAG+TGG 0.583507 2_3:-41621759 None:intergenic
TCCACCTCCAATGGTATTAG+GGG 0.584682 2_3:+41614849 None:intergenic
GGTTCAATGGATAAGCACTT+TGG 0.584940 2_3:+41621567 Msa0292400:CDS
CTTCACCTCAGTTGGAAAAG+GGG 0.585048 2_3:-41622089 None:intergenic
CGAAGCTGATGAGTACCTCT+TGG 0.586620 2_3:-41620649 None:intergenic
CCTCTTGGTGACTGCCTCTG+AGG 0.586987 2_3:-41620634 None:intergenic
AAAGGAAGAAGGAATGACAA+TGG 0.591938 2_3:+41621323 Msa0292400:CDS
GGATCCCCTTAAACTCGAGA+AGG 0.593538 2_3:-41614882 None:intergenic
CAGCGAGTTTGGCAGAATCA+CGG 0.596366 2_3:+41621772 Msa0292400:three_prime_UTR
TCCAGATCATCAACCATACC+AGG 0.598846 2_3:-41621642 None:intergenic
CTGCTGCTAGGGTTCCTGAA+AGG 0.600125 2_3:+41621541 Msa0292400:CDS
ACTGAACGAAGTCCAAAACT+AGG 0.607274 2_3:+41620718 Msa0292400:CDS
ACGTTGACGTGAATTTGTTG+AGG 0.607558 2_3:-41621828 None:intergenic
CTGTGGAAGAAGAAAAGGCA+GGG 0.608960 2_3:+41621418 Msa0292400:CDS
TAACTATGGCCATGTTTAGG+TGG 0.611223 2_3:+41621891 Msa0292400:three_prime_UTR
ACCGGTCGATGATGATGTGA+TGG 0.611787 2_3:-41620694 None:intergenic
AACTCGCTGTCAATTCAAGT+GGG 0.613913 2_3:-41621758 None:intergenic
AAGAGCTTAAAGGATTGTAC+GGG 0.615515 2_3:+41614938 Msa0292400:CDS
TACCACCTCTTGGAGATCGT+CGG 0.618257 2_3:-41620744 None:intergenic
ATCAGAAATGAAGAAGCTAA+GGG 0.620572 2_3:+41621446 Msa0292400:CDS
GTTTAAGGGGATCCAACCAC+CGG 0.625635 2_3:+41614891 Msa0292400:CDS
CATTTGAGACACCTGGTGGA+AGG 0.626032 2_3:+41621598 Msa0292400:CDS
AGCTCAATCAGTAGTTCCTG+TGG 0.631311 2_3:+41620924 Msa0292400:CDS
TCTGTGGAAGAAGAAAAGGC+AGG 0.632238 2_3:+41621417 Msa0292400:CDS
GGGGAACTGATTTGCCTCAG+AGG 0.632430 2_3:+41620620 Msa0292400:intron
CGTAGCGAAGAAGAGTTCGA+GGG 0.632800 2_3:+41614915 Msa0292400:CDS
CTTCTGCTACCACCTAAACA+TGG 0.642613 2_3:-41621900 None:intergenic
GCTAGGGTTCCTGAAAGGTG+TGG 0.647120 2_3:+41621546 Msa0292400:CDS
GACCGACGATCTCCAAGAGG+TGG 0.659823 2_3:+41620742 Msa0292400:CDS
ATGATGTGATGGATCTGAGT+CGG 0.663820 2_3:-41620683 None:intergenic
GGTGGAACATTTGAGACACC+TGG 0.665184 2_3:+41621591 Msa0292400:CDS
TATCCATGATACCTTCCACC+AGG 0.668548 2_3:-41621609 None:intergenic
GAATGAGAAGTTGAAATCTG+TGG 0.677488 2_3:+41621401 Msa0292400:CDS
CCTCAGAGGCAGTCACCAAG+AGG 0.691940 2_3:+41620634 Msa0292400:CDS
TAAGGGTGCAGACAGAACAA+TGG 0.700140 2_3:+41621463 Msa0292400:CDS
GGAACATTTGAGACACCTGG+TGG 0.711032 2_3:+41621594 Msa0292400:CDS
GGAGACCGACGATCTCCAAG+AGG 0.717137 2_3:+41620739 Msa0292400:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATAATAATAATAATAA+TGG - chr2_3:41617118-41617137 None:intergenic 0.0%
!!! TTTAAATAATTTTTTTTTTT+TGG - chr2_3:41617439-41617458 None:intergenic 0.0%
!!! TTATTTATCTTCTATTTTTT+AGG - chr2_3:41616127-41616146 None:intergenic 10.0%
!! AAAAAATTATAGCAAAATAT+TGG + chr2_3:41617163-41617182 Msa0292400:intron 10.0%
!! ATTTAAATAAGATTAAATGA+AGG + chr2_3:41617452-41617471 Msa0292400:intron 10.0%
!!! AGTTTTATTTAATTTCATTT+TGG + chr2_3:41617635-41617654 Msa0292400:intron 10.0%
!!! GTTTTATTTAATTTCATTTT+GGG + chr2_3:41617636-41617655 Msa0292400:intron 10.0%
!!! TTTTATTTAATTTCATTTTG+GGG + chr2_3:41617637-41617656 Msa0292400:intron 10.0%
!!! CATTTAGTTTTATAATTTAT+AGG + chr2_3:41618578-41618597 Msa0292400:intron 10.0%
!!! AATAATTACATTTTAAAAGA+AGG - chr2_3:41620385-41620404 None:intergenic 10.0%
!! TCAAATTAACAAAATTAAAG+AGG - chr2_3:41615215-41615234 None:intergenic 15.0%
!!! ATTTTGTTAATTTGAGTATA+TGG + chr2_3:41615220-41615239 Msa0292400:intron 15.0%
!! TAATTCAAATAATTAAGTCA+AGG - chr2_3:41615301-41615320 None:intergenic 15.0%
!! TTGACTTAATTATTTGAATT+AGG + chr2_3:41615300-41615319 Msa0292400:intron 15.0%
!! AGAAAATGTAATATACAATA+AGG - chr2_3:41615532-41615551 None:intergenic 15.0%
!! AAATGAAAGATTAAATCAAA+TGG + chr2_3:41615762-41615781 Msa0292400:intron 15.0%
!!! TTGTCTGAATTTTTTTTTTT+TGG + chr2_3:41617278-41617297 Msa0292400:intron 15.0%
!! AAAACAAAAAACAATCATTT+CGG + chr2_3:41617673-41617692 Msa0292400:intron 15.0%
!! AGATTTATTTAAATTGACAT+CGG + chr2_3:41617963-41617982 Msa0292400:intron 15.0%
!!! TTTTACTATTTTTACTTCAT+AGG + chr2_3:41618147-41618166 Msa0292400:intron 15.0%
!! ACATTATTATATAAAGCAAA+GGG - chr2_3:41618308-41618327 None:intergenic 15.0%
!! TTTGCTTTATATAATAATGT+GGG + chr2_3:41618308-41618327 Msa0292400:intron 15.0%
!! AAATTATAAAAGAAGAAGAT+AGG + chr2_3:41618456-41618475 Msa0292400:intron 15.0%
!! AATTATAAAAGAAGAAGATA+GGG + chr2_3:41618457-41618476 Msa0292400:intron 15.0%
!! AAAATTTGAAAAAGTAATGT+TGG - chr2_3:41618711-41618730 None:intergenic 15.0%
!!! AATAAAAGTATTGGTAAAAT+AGG - chr2_3:41618846-41618865 None:intergenic 15.0%
!! TAATTTATTAATAAGTTGCA+TGG + chr2_3:41618865-41618884 Msa0292400:intron 15.0%
!!! TAACATTTGATGATTTTATT+AGG + chr2_3:41618975-41618994 Msa0292400:intron 15.0%
!!! CTATTTTTCTTTAAAGAAAA+TGG - chr2_3:41620112-41620131 None:intergenic 15.0%
!!! TGTTTTTTATATCAAAATCA+GGG - chr2_3:41620491-41620510 None:intergenic 15.0%
!!! TTGTTTTTTATATCAAAATC+AGG - chr2_3:41620492-41620511 None:intergenic 15.0%
!! TGATATAAAAAACAAAATCA+TGG + chr2_3:41620497-41620516 Msa0292400:intron 15.0%
!!! ATTAATTGTTGTTTTCAAAT+AGG + chr2_3:41620599-41620618 Msa0292400:intron 15.0%
!!! TTAATTGTTGTTTTCAAATA+GGG + chr2_3:41620600-41620619 Msa0292400:intron 15.0%
!! TGCATATGAATTGAAAATTA+AGG + chr2_3:41615029-41615048 Msa0292400:intron 20.0%
!! TGAATTGAAAATTAAGGTAA+TGG + chr2_3:41615035-41615054 Msa0292400:intron 20.0%
!! GAATTGAAAATTAAGGTAAT+GGG + chr2_3:41615036-41615055 Msa0292400:intron 20.0%
!!! TAATCAAACATTTAGTTTAG+TGG + chr2_3:41615084-41615103 Msa0292400:intron 20.0%
!! TTAACAAAATTAAAGAGGAA+AGG - chr2_3:41615210-41615229 None:intergenic 20.0%
!! TTGAAAAGAATTTGACTAAT+TGG - chr2_3:41615592-41615611 None:intergenic 20.0%
!! TTTAAATGTATCTCAATTGT+TGG - chr2_3:41615697-41615716 None:intergenic 20.0%
!! ATTTAATCTTTCATTTACGA+CGG - chr2_3:41615758-41615777 None:intergenic 20.0%
!! AAGATTAAATCAAATGGTTA+AGG + chr2_3:41615768-41615787 Msa0292400:intron 20.0%
!! AGATTAAATCAAATGGTTAA+GGG + chr2_3:41615769-41615788 Msa0292400:intron 20.0%
!!! ATGTGTTACTTTATTTTTGA+GGG - chr2_3:41615894-41615913 None:intergenic 20.0%
!!! ATTACTTTAGTTCAATTACT+TGG - chr2_3:41615960-41615979 None:intergenic 20.0%
!!! TCTTTTTAACAATTTCTCAT+AGG - chr2_3:41615995-41616014 None:intergenic 20.0%
!! AGAAAGATGTATCAATAATT+TGG - chr2_3:41616082-41616101 None:intergenic 20.0%
!! ATATTCTATTCAAAAACATG+TGG + chr2_3:41616153-41616172 Msa0292400:intron 20.0%
!!! AAACAAAAAAAGGTCATTTT+GGG - chr2_3:41616265-41616284 None:intergenic 20.0%
!!! AAAACAAAAAAAGGTCATTT+TGG - chr2_3:41616266-41616285 None:intergenic 20.0%
!! CAATTGTACAAAACAAAAAA+AGG - chr2_3:41616275-41616294 None:intergenic 20.0%
!! AATAGTACTAAAAAAATGGA+GGG - chr2_3:41616508-41616527 None:intergenic 20.0%
!! AAATAGTACTAAAAAAATGG+AGG - chr2_3:41616509-41616528 None:intergenic 20.0%
!! AGCAAATAGTACTAAAAAAA+TGG - chr2_3:41616512-41616531 None:intergenic 20.0%
!!! TTTTTTTTAGTGTCTTGAAT+TGG + chr2_3:41616724-41616743 Msa0292400:intron 20.0%
!!! GAAGAAAGTTTGAATTTTTA+TGG + chr2_3:41616960-41616979 Msa0292400:intron 20.0%
!! ATGCATTATAATATGCAAAT+TGG - chr2_3:41617565-41617584 None:intergenic 20.0%
!! GATTTATTTAAATTGACATC+GGG + chr2_3:41617964-41617983 Msa0292400:intron 20.0%
!! AATAAAAAGTTAACTCAGAT+AGG - chr2_3:41618060-41618079 None:intergenic 20.0%
!!! GGTTTTAAATAAGTTATTGT+TGG + chr2_3:41618168-41618187 Msa0292400:intron 20.0%
!! CACATTATTATATAAAGCAA+AGG - chr2_3:41618309-41618328 None:intergenic 20.0%
!! CTTTGCTTTATATAATAATG+TGG + chr2_3:41618307-41618326 Msa0292400:intron 20.0%
!! TTGCTTTATATAATAATGTG+GGG + chr2_3:41618309-41618328 Msa0292400:intron 20.0%
!! ATGCATATTTGGAAATTATA+GGG - chr2_3:41618525-41618544 None:intergenic 20.0%
!!! TTGTGTAATTTTAAGATTTG+TGG - chr2_3:41618755-41618774 None:intergenic 20.0%
!! ATTTATATAGCTACTATTGT+AGG + chr2_3:41619072-41619091 Msa0292400:intron 20.0%
!! TTTATATAGCTACTATTGTA+GGG + chr2_3:41619073-41619092 Msa0292400:intron 20.0%
!!! TAAATTCCTTTTTCTTTTCT+TGG + chr2_3:41619429-41619448 Msa0292400:intron 20.0%
!!! AAATTCCTTTTTCTTTTCTT+GGG + chr2_3:41619430-41619449 Msa0292400:intron 20.0%
!! TTGAAATCATGTAAAATTGT+TGG + chr2_3:41619487-41619506 Msa0292400:intron 20.0%
!! TGAAATCATGTAAAATTGTT+GGG + chr2_3:41619488-41619507 Msa0292400:intron 20.0%
!! TGAATATCTATGTGTATTTA+TGG - chr2_3:41620020-41620039 None:intergenic 20.0%
!!! TAATTGACATTAACTTGAAA+AGG + chr2_3:41620084-41620103 Msa0292400:intron 20.0%
!!! AATTGACATTAACTTGAAAA+GGG + chr2_3:41620085-41620104 Msa0292400:intron 20.0%
!!! TAATTGTTGTTTTCAAATAG+GGG + chr2_3:41620601-41620620 Msa0292400:intron 20.0%
!! AAAACATGATGTATTTGAAA+AGG + chr2_3:41621104-41621123 Msa0292400:CDS 20.0%
!! ATAGTTAAAATACTACTCAT+TGG - chr2_3:41621878-41621897 None:intergenic 20.0%
!!! AATGAGTAGTATTTTAACTA+TGG + chr2_3:41621877-41621896 Msa0292400:three_prime_UTR 20.0%
!!! TTGTTTCTGTTGTATTATAA+TGG + chr2_3:41621978-41621997 Msa0292400:three_prime_UTR 20.0%
! AGTTATAACTAATGAACACA+AGG - chr2_3:41615392-41615411 None:intergenic 25.0%
! TAACTCATTTAATTGCTCTT+AGG + chr2_3:41615407-41615426 Msa0292400:intron 25.0%
!!! TCTAGTTTTGTATATTGTGT+GGG + chr2_3:41615446-41615465 Msa0292400:intron 25.0%
!!! CATGTGTTACTTTATTTTTG+AGG - chr2_3:41615895-41615914 None:intergenic 25.0%
! TAACACATGTATTTCAAACA+TGG + chr2_3:41615906-41615925 Msa0292400:intron 25.0%
!!! AACAAAAAAAGGTCATTTTG+GGG - chr2_3:41616264-41616283 None:intergenic 25.0%
! CAAAAAATGAAGAGAGAAAT+GGG - chr2_3:41616409-41616428 None:intergenic 25.0%
! ACAAAAAATGAAGAGAGAAA+TGG - chr2_3:41616410-41616429 None:intergenic 25.0%
!!! TTCCTTGTTTTTTGGTTTTT+GGG + chr2_3:41616451-41616470 Msa0292400:intron 25.0%
!! AAAAAAATGGAGGGTTTTTA+AGG - chr2_3:41616499-41616518 None:intergenic 25.0%
!! TTTTAGTACTATTTGCTTTC+AGG + chr2_3:41616515-41616534 Msa0292400:intron 25.0%
! TTTAGTACTATTTGCTTTCA+GGG + chr2_3:41616516-41616535 Msa0292400:intron 25.0%
! TATGCAAAATATTCTCATCA+AGG + chr2_3:41616586-41616605 Msa0292400:CDS 25.0%
! TAGTTGTTAAACTTCTTTAG+CGG + chr2_3:41617207-41617226 Msa0292400:intron 25.0%
! GAAATTTACTTGAGTGTTAT+TGG + chr2_3:41617316-41617335 Msa0292400:intron 25.0%
!!! TTGATGATGTATTTTAGATG+AGG + chr2_3:41617342-41617361 Msa0292400:intron 25.0%
! ATTGTCAGATATCAATCAAA+CGG - chr2_3:41617929-41617948 None:intergenic 25.0%
!! ATACTTTTATCAAAAGAGCA+TGG + chr2_3:41618109-41618128 Msa0292400:intron 25.0%
! AAATAAGTTATTGTTGGTCA+TGG + chr2_3:41618174-41618193 Msa0292400:intron 25.0%
! TTATTATATAAAGCAAAGGG+TGG - chr2_3:41618305-41618324 None:intergenic 25.0%
! CATGCATATTTGGAAATTAT+AGG - chr2_3:41618526-41618545 None:intergenic 25.0%
! GTAGGTCAAATAATTATTGT+AGG - chr2_3:41618795-41618814 None:intergenic 25.0%
!! AATTCCTTTTTCTTTTCTTG+GGG + chr2_3:41619431-41619450 Msa0292400:intron 25.0%
! ACATTATACTACCAACAATT+GGG - chr2_3:41619625-41619644 None:intergenic 25.0%
! AACATTATACTACCAACAAT+TGG - chr2_3:41619626-41619645 None:intergenic 25.0%
!! TTTTATTGCATGTCATTGTT+TGG + chr2_3:41619780-41619799 Msa0292400:intron 25.0%
!! TCTTTCTTGATTTTTCCAAA+AGG + chr2_3:41619860-41619879 Msa0292400:intron 25.0%
!! CTTTCTTGATTTTTCCAAAA+GGG + chr2_3:41619861-41619880 Msa0292400:intron 25.0%
!!! AATACCTTTCTAGTTTCTAA+TGG + chr2_3:41619889-41619908 Msa0292400:intron 25.0%
!! GATAATTCTTTGATTTCTTG+AGG + chr2_3:41619914-41619933 Msa0292400:intron 25.0%
! ATGTGACTAATAAACTAGAA+AGG - chr2_3:41619952-41619971 None:intergenic 25.0%
! GTCAATTAAGCTCTTAAATT+AGG - chr2_3:41620072-41620091 None:intergenic 25.0%
!!! ATTTTTTTGTTACCTTTAGC+AGG + chr2_3:41620228-41620247 Msa0292400:intron 25.0%
! TTTAAAAAAAATCACGGTCT+CGG - chr2_3:41620552-41620571 None:intergenic 25.0%
! ACAGCGTTTAAAAAAAATCA+CGG - chr2_3:41620558-41620577 None:intergenic 25.0%
! ATTAATACAGCTTAAACGTT+TGG - chr2_3:41620585-41620604 None:intergenic 25.0%
!!! AACATCTTGATGTTTTGTTT+CGG - chr2_3:41621010-41621029 None:intergenic 25.0%
! GAAGAAATTGAGTAAAGAAT+TGG + chr2_3:41621350-41621369 Msa0292400:CDS 25.0%
!! TTAGAATGTTTGGTGATTTA+TGG + chr2_3:41621706-41621725 Msa0292400:CDS 25.0%
! TTCTGTCAAAAGTAATACTT+TGG + chr2_3:41621803-41621822 Msa0292400:three_prime_UTR 25.0%
! ACATAATAGTACACTCTTAA+TGG - chr2_3:41622004-41622023 None:intergenic 25.0%
!!! TGATATGAACTTTTGAAAGA+TGG + chr2_3:41622051-41622070 Msa0292400:three_prime_UTR 25.0%
TGAAGAAACACCAATTTCAA+AGG + chr2_3:41614981-41615000 Msa0292400:intron 30.0%
GAAGAAACACCAATTTCAAA+GGG + chr2_3:41614982-41615001 Msa0292400:intron 30.0%
!! TTGAAAATTAAGGTAATGGG+AGG + chr2_3:41615039-41615058 Msa0292400:intron 30.0%
CATTTAATTGCTCTTAGGTT+TGG + chr2_3:41615412-41615431 Msa0292400:intron 30.0%
!!! GTCTAGTTTTGTATATTGTG+TGG + chr2_3:41615445-41615464 Msa0292400:intron 30.0%
! ATCTCAATTGTTGGTCTATA+TGG - chr2_3:41615688-41615707 None:intergenic 30.0%
TGTTGATATTGTCCAACAAA+TGG + chr2_3:41615718-41615737 Msa0292400:intron 30.0%
GACTCAAATATCTATCACTT+AGG + chr2_3:41615791-41615810 Msa0292400:intron 30.0%
CACACTATAGTAGATATAGA+TGG + chr2_3:41615815-41615834 Msa0292400:intron 30.0%
ACTAAAGTAATTGAGATGCT+TGG + chr2_3:41615969-41615988 Msa0292400:intron 30.0%
!! ACAAAAAAAGGTCATTTTGG+GGG - chr2_3:41616263-41616282 None:intergenic 30.0%
TTAAAGCTGTTATGAACTGT+GGG - chr2_3:41616365-41616384 None:intergenic 30.0%
ATTAAAGCTGTTATGAACTG+TGG - chr2_3:41616366-41616385 None:intergenic 30.0%
!!! CTTCCTTGTTTTTTGGTTTT+TGG + chr2_3:41616450-41616469 Msa0292400:intron 30.0%
TACCCAAAAACCAAAAAACA+AGG - chr2_3:41616456-41616475 None:intergenic 30.0%
GATGTAGATGAACAAACATT+CGG + chr2_3:41616784-41616803 Msa0292400:intron 30.0%
AGGAGATATAAGACATTGTT+TGG - chr2_3:41616830-41616849 None:intergenic 30.0%
AAATGCACAGGAACAATTTA+AGG - chr2_3:41616850-41616869 None:intergenic 30.0%
! CTATTGACCATTGTCTTTTT+AGG + chr2_3:41616884-41616903 Msa0292400:intron 30.0%
!! AAAAGCACCTAAAAAGACAA+TGG - chr2_3:41616894-41616913 None:intergenic 30.0%
GCTAAAGAAGTTTAACAACT+AGG - chr2_3:41617208-41617227 None:intergenic 30.0%
TAGCTTAGTAGTAAAAGGAT+TGG - chr2_3:41617234-41617253 None:intergenic 30.0%
! AGATTTGAAACATGTCTAGA+TGG - chr2_3:41617259-41617278 None:intergenic 30.0%
!! TCTTTAGTGTATTTTAGACG+TGG + chr2_3:41617372-41617391 Msa0292400:intron 30.0%
!! CTTTAGTGTATTTTAGACGT+GGG + chr2_3:41617373-41617392 Msa0292400:intron 30.0%
! TTTTAGACGTGGGAAAATTA+TGG + chr2_3:41617383-41617402 Msa0292400:intron 30.0%
ATGAAGGATTAAGAAAGAGT+TGG + chr2_3:41617468-41617487 Msa0292400:intron 30.0%
TGTTTGATATGAGCTGAATT+TGG + chr2_3:41617779-41617798 Msa0292400:intron 30.0%
AAAAGTTAACTCAGATAGGT+TGG - chr2_3:41618056-41618075 None:intergenic 30.0%
! CAGTTTTCATAAGTATCTTG+TGG + chr2_3:41618263-41618282 Msa0292400:intron 30.0%
AGGGACTAAGATAAAATTTG+AGG - chr2_3:41618506-41618525 None:intergenic 30.0%
CATGCTTCTAATTTCACTTT+AGG + chr2_3:41618546-41618565 Msa0292400:intron 30.0%
TATTGTTTGCCTTATAATCG+CGG + chr2_3:41618682-41618701 Msa0292400:intron 30.0%
AAAGTGTATCATTACAGAGT+AGG - chr2_3:41618813-41618832 None:intergenic 30.0%
TTGGTAAAATAGGAGTTGAA+GGG - chr2_3:41618836-41618855 None:intergenic 30.0%
ATTGGTAAAATAGGAGTTGA+AGG - chr2_3:41618837-41618856 None:intergenic 30.0%
TAACACAAACAACCTTAGTA+GGG - chr2_3:41618917-41618936 None:intergenic 30.0%
CTGAAAACATCAGAAGAAAA+AGG - chr2_3:41618948-41618967 None:intergenic 30.0%
!!! AGTTTGTTCAAGTGTTGTTT+TGG - chr2_3:41619016-41619035 None:intergenic 30.0%
!!! TTTTTTTCTGCAATGAATGC+CGG - chr2_3:41619125-41619144 None:intergenic 30.0%
ATAGGGAAACATATTTACTG+CGG - chr2_3:41619284-41619303 None:intergenic 30.0%
CAGTAAATATGTTTCCCTAT+TGG + chr2_3:41619284-41619303 Msa0292400:intron 30.0%
ACACATGTACAATTCCAATA+GGG - chr2_3:41619301-41619320 None:intergenic 30.0%
TACACATGTACAATTCCAAT+AGG - chr2_3:41619302-41619321 None:intergenic 30.0%
ACTTTCCCATAAATTGCATT+AGG - chr2_3:41619360-41619379 None:intergenic 30.0%
AGTTATATGCTAGCATTATC+AGG + chr2_3:41619383-41619402 Msa0292400:intron 30.0%
TCTTCCATTAGAAACTAGAA+AGG - chr2_3:41619896-41619915 None:intergenic 30.0%
AATTAGGTGTAACAGATAGA+AGG - chr2_3:41620056-41620075 None:intergenic 30.0%
GTGATAGAACAACAATTCTA+AGG - chr2_3:41620284-41620303 None:intergenic 30.0%
TAACATACATACCTTGATCT+TGG - chr2_3:41620332-41620351 None:intergenic 30.0%
GTATAACATGATTAGTAGCA+AGG - chr2_3:41620414-41620433 None:intergenic 30.0%
! TTTTGATAGACTGTGAGTTT+AGG + chr2_3:41620447-41620466 Msa0292400:intron 30.0%
AAGTTTGGAGGAAAAAAAGA+AGG + chr2_3:41621218-41621237 Msa0292400:CDS 30.0%
! ATTCATTCAGTTGATTCTTC+AGG - chr2_3:41621275-41621294 None:intergenic 30.0%
AAAGAATTGGAAGCTAGTAA+AGG + chr2_3:41621363-41621382 Msa0292400:CDS 30.0%
AAGAATTGGAAGCTAGTAAA+GGG + chr2_3:41621364-41621383 Msa0292400:CDS 30.0%
AATCAGAAATGAAGAAGCTA+AGG + chr2_3:41621445-41621464 Msa0292400:CDS 30.0%
ATCAGAAATGAAGAAGCTAA+GGG + chr2_3:41621446-41621465 Msa0292400:CDS 30.0%
!!! TTTTGGTAGTGGAAAAAAGA+AGG + chr2_3:41621671-41621690 Msa0292400:CDS 30.0%
!! TTTGGTAGTGGAAAAAAGAA+GGG + chr2_3:41621672-41621691 Msa0292400:CDS 30.0%
TCTTCTGGTATTAGAATGTT+TGG + chr2_3:41621696-41621715 Msa0292400:CDS 30.0%
!! TTTTAACTATGGCCATGTTT+AGG + chr2_3:41621888-41621907 Msa0292400:three_prime_UTR 30.0%
TTCTAACCTTCTCGAGTTTA+AGG + chr2_3:41614876-41614895 Msa0292400:CDS 35.0%
TCTAACCTTCTCGAGTTTAA+GGG + chr2_3:41614877-41614896 Msa0292400:CDS 35.0%
GAAGAGCTTAAAGGATTGTA+CGG + chr2_3:41614937-41614956 Msa0292400:CDS 35.0%
AAGAGCTTAAAGGATTGTAC+GGG + chr2_3:41614938-41614957 Msa0292400:CDS 35.0%
!! CCTCAAATACCCTTTGAAAT+TGG - chr2_3:41614994-41615013 None:intergenic 35.0%
!! CCAATTTCAAAGGGTATTTG+AGG + chr2_3:41614991-41615010 Msa0292400:intron 35.0%
!! TTCAAAGGGTATTTGAGGAT+TGG + chr2_3:41614996-41615015 Msa0292400:intron 35.0%
!! TCAAAGGGTATTTGAGGATT+GGG + chr2_3:41614997-41615016 Msa0292400:intron 35.0%
! TTTAGTTTAGTGGAAGTCCT+TGG + chr2_3:41615094-41615113 Msa0292400:intron 35.0%
AAGATAGAATACACGCTAGA+GGG - chr2_3:41615664-41615683 None:intergenic 35.0%
GCGTATGAAAAACCATTTGT+TGG - chr2_3:41615733-41615752 None:intergenic 35.0%
GAAGTGCAAGAAACTAGAAA+GGG - chr2_3:41616434-41616453 None:intergenic 35.0%
!!! TCTTGCACTTCCTTGTTTTT+TGG + chr2_3:41616443-41616462 Msa0292400:intron 35.0%
ACCTCTTAAAGTTGTGTAAC+TGG + chr2_3:41617073-41617092 Msa0292400:intron 35.0%
TCCAGTTACACAACTTTAAG+AGG - chr2_3:41617077-41617096 None:intergenic 35.0%
TGGTGTAGCTTAGTAGTAAA+AGG - chr2_3:41617239-41617258 None:intergenic 35.0%
CCAAACAGTATGTAAGACAA+AGG - chr2_3:41617868-41617887 None:intergenic 35.0%
CCTTTGTCTTACATACTGTT+TGG + chr2_3:41617865-41617884 Msa0292400:intron 35.0%
TTGTCTTACATACTGTTTGG+TGG + chr2_3:41617868-41617887 Msa0292400:intron 35.0%
!! AATTTTTGACTAGCTGCATG+CGG - chr2_3:41617901-41617920 None:intergenic 35.0%
! AGTGTTATTCTTCAAGGTCT+CGG - chr2_3:41618006-41618025 None:intergenic 35.0%
AGGTCTCAATTCAATGTCAT+CGG + chr2_3:41618029-41618048 Msa0292400:intron 35.0%
AGGGACAATTCAATAGAGAA+TGG + chr2_3:41618360-41618379 Msa0292400:intron 35.0%
AGAAGAGAATGACAATAAGC+TGG - chr2_3:41618394-41618413 None:intergenic 35.0%
! TAGAAGCATGCATGCATATT+TGG - chr2_3:41618536-41618555 None:intergenic 35.0%
ATTGTTTGCCTTATAATCGC+GGG + chr2_3:41618683-41618702 Msa0292400:intron 35.0%
TCTAGATATTTGCCCTACTA+AGG + chr2_3:41618902-41618921 Msa0292400:intron 35.0%
GTAACACAAACAACCTTAGT+AGG - chr2_3:41618918-41618937 None:intergenic 35.0%
AGACTACAATAGCACATACA+AGG + chr2_3:41619041-41619060 Msa0292400:intron 35.0%
!!! TTTTTTCTGCAATGAATGCC+GGG - chr2_3:41619124-41619143 None:intergenic 35.0%
CATTGCAGAAAAAAACCCTT+TGG + chr2_3:41619130-41619149 Msa0292400:intron 35.0%
ATTAGTCAATCAGAGCCATT+CGG - chr2_3:41619237-41619256 None:intergenic 35.0%
!! CCTTTCAAGTTGTTGCATAA+TGG - chr2_3:41619329-41619348 None:intergenic 35.0%
CCATTATGCAACAACTTGAA+AGG + chr2_3:41619326-41619345 Msa0292400:intron 35.0%
TATGCAACAACTTGAAAGGA+TGG + chr2_3:41619330-41619349 Msa0292400:intron 35.0%
AAGATTGGACGATTCATATG+GGG - chr2_3:41619550-41619569 None:intergenic 35.0%
CAAGATTGGACGATTCATAT+GGG - chr2_3:41619551-41619570 None:intergenic 35.0%
TCAAGATTGGACGATTCATA+TGG - chr2_3:41619552-41619571 None:intergenic 35.0%
ACAACTCATATCCCAATTGT+TGG + chr2_3:41619611-41619630 Msa0292400:intron 35.0%
!!! AAAGGTATTGATGACCCTTT+TGG - chr2_3:41619878-41619897 None:intergenic 35.0%
TAGTCACATTTGTAGTGAGT+TGG + chr2_3:41619963-41619982 Msa0292400:intron 35.0%
! GCTTCTTTATGATAGTGTGT+TGG + chr2_3:41619985-41620004 Msa0292400:intron 35.0%
! TTTTTGTTACCTTTAGCAGG+TGG + chr2_3:41620231-41620250 Msa0292400:intron 35.0%
CATATCAAATGCCAAGATCA+AGG + chr2_3:41620318-41620337 Msa0292400:CDS 35.0%
CTTCTTCTGATTTACTGTCT+CGG - chr2_3:41620776-41620795 None:intergenic 35.0%
ACAGTAAATCAGAAGAAGCT+CGG + chr2_3:41620778-41620797 Msa0292400:CDS 35.0%
AGCTGAAAAGAAAAAAGCTG+AGG + chr2_3:41620885-41620904 Msa0292400:CDS 35.0%
! TCTTGAAACTTTTCTACCAC+AGG - chr2_3:41620943-41620962 None:intergenic 35.0%
! GTCTCTTCTTGATTTTCATC+AGG - chr2_3:41621039-41621058 None:intergenic 35.0%
TGAAGTTCCTATCGAAAAGT+TGG + chr2_3:41621068-41621087 Msa0292400:CDS 35.0%
! TCAATTGCCAACTTTTCGAT+AGG - chr2_3:41621078-41621097 None:intergenic 35.0%
AGTAAAAGCTGCTGAAACAA+AGG + chr2_3:41621305-41621324 Msa0292400:CDS 35.0%
AAAGGAAGAAGGAATGACAA+TGG + chr2_3:41621323-41621342 Msa0292400:CDS 35.0%
CAACTTCTCATTCAACTTCT+CGG - chr2_3:41621394-41621413 None:intergenic 35.0%
GAATGAGAAGTTGAAATCTG+TGG + chr2_3:41621401-41621420 Msa0292400:CDS 35.0%
GAAATCTGTGGAAGAAGAAA+AGG + chr2_3:41621413-41621432 Msa0292400:CDS 35.0%
GGTGATTTATGGAAGAAGAA+AGG + chr2_3:41621717-41621736 Msa0292400:CDS 35.0%
! TTGTTGTGCATGCTTCTTTT+TGG + chr2_3:41621943-41621962 Msa0292400:three_prime_UTR 35.0%
CTAACCTTCTCGAGTTTAAG+GGG + chr2_3:41614878-41614897 Msa0292400:CDS 40.0%
!! CAAAGGGTATTTGAGGATTG+GGG + chr2_3:41614998-41615017 Msa0292400:intron 40.0%
!! AAAGGGTATTTGAGGATTGG+GGG + chr2_3:41614999-41615018 Msa0292400:intron 40.0%
AGATAGAATACACGCTAGAG+GGG - chr2_3:41615663-41615682 None:intergenic 40.0%
CAAGATAGAATACACGCTAG+AGG - chr2_3:41615665-41615684 None:intergenic 40.0%
CATAAATGAGCACTAGCTAC+TGG + chr2_3:41616329-41616348 Msa0292400:intron 40.0%
! GGAAGTGCAAGAAACTAGAA+AGG - chr2_3:41616435-41616454 None:intergenic 40.0%
! ATTGTTCCTGTGCATTTTGC+AGG + chr2_3:41616853-41616872 Msa0292400:intron 40.0%
CTTCTTAAATTTCACGCGCA+TGG + chr2_3:41617805-41617824 Msa0292400:intron 40.0%
! GTGTTATTCTTCAAGGTCTC+GGG - chr2_3:41618005-41618024 None:intergenic 40.0%
!! CCTGAGAGTGTTATTCTTCA+AGG - chr2_3:41618012-41618031 None:intergenic 40.0%
CCTTGAAGAATAACACTCTC+AGG + chr2_3:41618009-41618028 Msa0292400:intron 40.0%
TAAGTATCTTGTGGCCACTA+TGG + chr2_3:41618272-41618291 Msa0292400:intron 40.0%
ATAATAATGTGGGGCCTTGA+TGG + chr2_3:41618318-41618337 Msa0292400:intron 40.0%
TAATAATGTGGGGCCTTGAT+GGG + chr2_3:41618319-41618338 Msa0292400:intron 40.0%
! ATGGGTTTGGTTTCCCAAAA+GGG + chr2_3:41618337-41618356 Msa0292400:intron 40.0%
! TTGAATTGTCCCTCCCTTTT+GGG - chr2_3:41618353-41618372 None:intergenic 40.0%
! ATTGAATTGTCCCTCCCTTT+TGG - chr2_3:41618354-41618373 None:intergenic 40.0%
CTGTCTGATCTTCATCCAAA+GGG - chr2_3:41619148-41619167 None:intergenic 40.0%
ACTGTCTGATCTTCATCCAA+AGG - chr2_3:41619149-41619168 None:intergenic 40.0%
!! GACTAATTGCATCGACTAGA+TGG + chr2_3:41619250-41619269 Msa0292400:intron 40.0%
CAACAACTTGAAAGGATGGT+GGG + chr2_3:41619334-41619353 Msa0292400:intron 40.0%
GTGGGCCTAATGCAATTTAT+GGG + chr2_3:41619352-41619371 Msa0292400:intron 40.0%
! ATCAGGTTGCACATTTGCAT+AGG + chr2_3:41619400-41619419 Msa0292400:intron 40.0%
! TCAGGTTGCACATTTGCATA+GGG + chr2_3:41619401-41619420 Msa0292400:intron 40.0%
AGCACCCCAAGAAAAGAAAA+AGG - chr2_3:41619438-41619457 None:intergenic 40.0%
!! TTTTCTTTTCTTGGGGTGCT+AGG + chr2_3:41619438-41619457 Msa0292400:intron 40.0%
! ATGTGTCGTTGGATCAAGAT+TGG - chr2_3:41619565-41619584 None:intergenic 40.0%
TTGATCCAACGACACATATG+TGG + chr2_3:41619568-41619587 Msa0292400:intron 40.0%
CAACGACACATATGTGGTTA+CGG + chr2_3:41619574-41619593 Msa0292400:intron 40.0%
AACGACACATATGTGGTTAC+GGG + chr2_3:41619575-41619594 Msa0292400:intron 40.0%
! AAAAGCATGCACAATGTCAG+AGG - chr2_3:41619732-41619751 None:intergenic 40.0%
! CATGTCATTGTTTGGAACAC+AGG + chr2_3:41619788-41619807 Msa0292400:intron 40.0%
AACACAGGACTAATGTGATG+TGG + chr2_3:41619803-41619822 Msa0292400:intron 40.0%
ACACAGGACTAATGTGATGT+GGG + chr2_3:41619804-41619823 Msa0292400:intron 40.0%
!! ATGATAGTGTGTTGGCTCAA+AGG + chr2_3:41619993-41620012 Msa0292400:intron 40.0%
!! TGATAGTGTGTTGGCTCAAA+GGG + chr2_3:41619994-41620013 Msa0292400:intron 40.0%
!! ATGATGTGATGGATCTGAGT+CGG - chr2_3:41620686-41620705 None:intergenic 40.0%
TTTGGACTTCGTTCAGTAAC+CGG - chr2_3:41620715-41620734 None:intergenic 40.0%
ACTGAACGAAGTCCAAAACT+AGG + chr2_3:41620718-41620737 Msa0292400:CDS 40.0%
CAGTAAATCAGAAGAAGCTC+GGG + chr2_3:41620779-41620798 Msa0292400:CDS 40.0%
AGCGTCGTTGAAATCAAGTT+TGG + chr2_3:41621203-41621222 Msa0292400:CDS 40.0%
GTCGTTGAAATCAAGTTTGG+AGG + chr2_3:41621206-41621225 Msa0292400:CDS 40.0%
GGAGGAAAAAAAGAAGGAAC+TGG + chr2_3:41621224-41621243 Msa0292400:CDS 40.0%
GGTTCAATGGATAAGCACTT+TGG + chr2_3:41621567-41621586 Msa0292400:CDS 40.0%
TCAATGGATAAGCACTTTGG+CGG + chr2_3:41621570-41621589 Msa0292400:CDS 40.0%
!! GGAAGGTATCATGGATATGT+AGG + chr2_3:41621615-41621634 Msa0292400:CDS 40.0%
ATATGTAGGTTCTCCTGGTA+TGG + chr2_3:41621629-41621648 Msa0292400:CDS 40.0%
!! ATGGTTGATGATCTGGATGA+TGG + chr2_3:41621648-41621667 Msa0292400:CDS 40.0%
!! GATGATCTGGATGATGGTTT+TGG + chr2_3:41621654-41621673 Msa0292400:CDS 40.0%
GGAAAAAAGAAGGGTTCTTC+TGG + chr2_3:41621681-41621700 Msa0292400:CDS 40.0%
AACTCGCTGTCAATTCAAGT+GGG - chr2_3:41621761-41621780 None:intergenic 40.0%
AAACTCGCTGTCAATTCAAG+TGG - chr2_3:41621762-41621781 None:intergenic 40.0%
ACTTGAATTGACAGCGAGTT+TGG + chr2_3:41621761-41621780 Msa0292400:three_prime_UTR 40.0%
!! ACGTTGACGTGAATTTGTTG+AGG - chr2_3:41621831-41621850 None:intergenic 40.0%
TAACTATGGCCATGTTTAGG+TGG + chr2_3:41621891-41621910 Msa0292400:three_prime_UTR 40.0%
! ATTTTCCCCTTTTCCAACTG+AGG + chr2_3:41622084-41622103 Msa0292400:three_prime_UTR 40.0%
AGTTCGAGGGAAGAGCTTAA+AGG + chr2_3:41614928-41614947 Msa0292400:CDS 45.0%
AAGGATTGTACGGGTGATTG+AGG + chr2_3:41614947-41614966 Msa0292400:intron 45.0%
AGTTTAGTGGAAGTCCTTGG+TGG + chr2_3:41615097-41615116 Msa0292400:intron 45.0%
GGATCGTCTACTCTTCTTGA+AGG - chr2_3:41615132-41615151 None:intergenic 45.0%
ATAGAATACACGCTAGAGGG+GGG - chr2_3:41615661-41615680 None:intergenic 45.0%
GATAGAATACACGCTAGAGG+GGG - chr2_3:41615662-41615681 None:intergenic 45.0%
AAGCTGTTATGAACTGTGGG+AGG - chr2_3:41616362-41616381 None:intergenic 45.0%
AGTGATCCTGCAAAATGCAC+AGG - chr2_3:41616862-41616881 None:intergenic 45.0%
TATAAAGCAAAGGGTGGCAG+TGG - chr2_3:41618299-41618318 None:intergenic 45.0%
TTGGGAAACCAAACCCATCA+AGG - chr2_3:41618335-41618354 None:intergenic 45.0%
! GATGGGTTTGGTTTCCCAAA+AGG + chr2_3:41618336-41618355 Msa0292400:intron 45.0%
! GTTTGGTTTCCCAAAAGGGA+GGG + chr2_3:41618341-41618360 Msa0292400:intron 45.0%
CATCTTAGAATGCGAGCCAT+CGG + chr2_3:41619200-41619219 Msa0292400:intron 45.0%
TTCGGATGAAGATCAACCGA+TGG - chr2_3:41619219-41619238 None:intergenic 45.0%
TCGGTTGATCTTCATCCGAA+TGG + chr2_3:41619219-41619238 Msa0292400:intron 45.0%
GCAACAACTTGAAAGGATGG+TGG + chr2_3:41619333-41619352 Msa0292400:intron 45.0%
GGTGGGCCTAATGCAATTTA+TGG + chr2_3:41619351-41619370 Msa0292400:intron 45.0%
CGTAACCACATATGTGTCGT+TGG - chr2_3:41619576-41619595 None:intergenic 45.0%
! TGTGCATGCTTTTGCTCTTG+AGG + chr2_3:41619739-41619758 Msa0292400:intron 45.0%
! GTGCATGCTTTTGCTCTTGA+GGG + chr2_3:41619740-41619759 Msa0292400:intron 45.0%
CACAGGACTAATGTGATGTG+GGG + chr2_3:41619805-41619824 Msa0292400:intron 45.0%
AATCTCACTCCACCTGCTAA+AGG - chr2_3:41620243-41620262 None:intergenic 45.0%
TGTGAGTTTAGGCAGAATCG+CGG + chr2_3:41620458-41620477 Msa0292400:intron 45.0%
! TCACGGTCTCGGATTTTGTT+AGG - chr2_3:41620541-41620560 None:intergenic 45.0%
!! CAAGAGGTACTCATCAGCTT+CGG + chr2_3:41620650-41620669 Msa0292400:CDS 45.0%
TCCATCACATCATCATCGAC+CGG + chr2_3:41620693-41620712 Msa0292400:CDS 45.0%
! GCAGATTTGGAATCACAGCT+TGG + chr2_3:41620811-41620830 Msa0292400:CDS 45.0%
AGCTCAATCAGTAGTTCCTG+TGG + chr2_3:41620924-41620943 Msa0292400:CDS 45.0%
! GATGTTGCTGGTTGAGTTTG+AGG - chr2_3:41621132-41621151 None:intergenic 45.0%
GCTGCTGAAACAAAGGAAGA+AGG + chr2_3:41621312-41621331 Msa0292400:CDS 45.0%
TCTGTGGAAGAAGAAAAGGC+AGG + chr2_3:41621417-41621436 Msa0292400:CDS 45.0%
CTGTGGAAGAAGAAAAGGCA+GGG + chr2_3:41621418-41621437 Msa0292400:CDS 45.0%
! TAAGGGTGCAGACAGAACAA+TGG + chr2_3:41621463-41621482 Msa0292400:CDS 45.0%
! TTGATATGAGTGCTGCTGCT+AGG + chr2_3:41621529-41621548 Msa0292400:CDS 45.0%
! TGATATGAGTGCTGCTGCTA+GGG + chr2_3:41621530-41621549 Msa0292400:CDS 45.0%
! TCCTGAAAGGTGTGGTTCAA+TGG + chr2_3:41621554-41621573 Msa0292400:CDS 45.0%
TCCATTGAACCACACCTTTC+AGG - chr2_3:41621558-41621577 None:intergenic 45.0%
TATCCATGATACCTTCCACC+AGG - chr2_3:41621612-41621631 None:intergenic 45.0%
CATGGATATGTAGGTTCTCC+TGG + chr2_3:41621624-41621643 Msa0292400:CDS 45.0%
!! TCCTGGTATGGTTGATGATC+TGG + chr2_3:41621641-41621660 Msa0292400:CDS 45.0%
TCCAGATCATCAACCATACC+AGG - chr2_3:41621645-41621664 None:intergenic 45.0%
!!! CTGGATGATGGTTTTGGTAG+TGG + chr2_3:41621660-41621679 Msa0292400:CDS 45.0%
! GTGGGTGCAGAAATCACTTT+TGG - chr2_3:41621743-41621762 None:intergenic 45.0%
CTTCTGCTACCACCTAAACA+TGG - chr2_3:41621903-41621922 None:intergenic 45.0%
CTTCACCTCAGTTGGAAAAG+GGG - chr2_3:41622092-41622111 None:intergenic 45.0%
CCTTCACCTCAGTTGGAAAA+GGG - chr2_3:41622093-41622112 None:intergenic 45.0%
! CCTTTTCCAACTGAGGTGAA+GGG + chr2_3:41622091-41622110 Msa0292400:three_prime_UTR 45.0%
TAAGAACCCTTCACCTCAGT+TGG - chr2_3:41622100-41622119 None:intergenic 45.0%
!!! TTTGTTTATTTTATTTTAAA+TGG + chr2_3:41616912-41616931 Msa0292400:intron 5.0%
!!! ATAATTAGTAATTTTTTTTT+TGG - chr2_3:41617030-41617049 None:intergenic 5.0%
!!! ATTTAGTTTTATAATTTATA+GGG + chr2_3:41618579-41618598 Msa0292400:intron 5.0%
!!! TTATTTTTTATTTTTAGTTT+CGG - chr2_3:41618620-41618639 None:intergenic 5.0%
!!! TAATAAATTAATAAAAGTAT+TGG - chr2_3:41618855-41618874 None:intergenic 5.0%
GGATCCCCTTAAACTCGAGA+AGG - chr2_3:41614885-41614904 None:intergenic 50.0%
GTTTAAGGGGATCCAACCAC+CGG + chr2_3:41614891-41614910 Msa0292400:CDS 50.0%
GAACTCTTCTTCGCTACGTC+CGG - chr2_3:41614913-41614932 None:intergenic 50.0%
ACGTAGCGAAGAAGAGTTCG+AGG + chr2_3:41614914-41614933 Msa0292400:CDS 50.0%
CGTAGCGAAGAAGAGTTCGA+GGG + chr2_3:41614915-41614934 Msa0292400:CDS 50.0%
GAAGGAAAACGTCTCCACCA+AGG - chr2_3:41615114-41615133 None:intergenic 50.0%
! GGTTTGGTTTCCCAAAAGGG+AGG + chr2_3:41618340-41618359 Msa0292400:intron 50.0%
TGTTGGAGCCCGCGATTATA+AGG - chr2_3:41618694-41618713 None:intergenic 50.0%
! TTGCCGCGTTTTCACAATCC+CGG + chr2_3:41619103-41619122 Msa0292400:intron 50.0%
ATGCCGGGATTGTGAAAACG+CGG - chr2_3:41619109-41619128 None:intergenic 50.0%
! CATGCTTTTGCTCTTGAGGG+TGG + chr2_3:41619743-41619762 Msa0292400:intron 50.0%
CGAAGCTGATGAGTACCTCT+TGG - chr2_3:41620652-41620671 None:intergenic 50.0%
! ACCGGTCGATGATGATGTGA+TGG - chr2_3:41620697-41620716 None:intergenic 50.0%
! GATCGTCGGTCTCCTAGTTT+TGG - chr2_3:41620733-41620752 None:intergenic 50.0%
TACCACCTCTTGGAGATCGT+CGG - chr2_3:41620747-41620766 None:intergenic 50.0%
TCGGATTGAGTACCACCTCT+TGG - chr2_3:41620757-41620776 None:intergenic 50.0%
!! TTCTCTGGCTCTGATGTTGC+TGG - chr2_3:41621144-41621163 None:intergenic 50.0%
! AGAGCCAGAGAAGCCTTTTG+TGG + chr2_3:41621152-41621171 Msa0292400:CDS 50.0%
TCCTCCACAAAAGGCTTCTC+TGG - chr2_3:41621159-41621178 None:intergenic 50.0%
AGTGTCAGCTCCTCCACAAA+AGG - chr2_3:41621168-41621187 None:intergenic 50.0%
ATGGATAAGCACTTTGGCGG+TGG + chr2_3:41621573-41621592 Msa0292400:CDS 50.0%
! GGTGGAACATTTGAGACACC+TGG + chr2_3:41621591-41621610 Msa0292400:CDS 50.0%
! GGAACATTTGAGACACCTGG+TGG + chr2_3:41621594-41621613 Msa0292400:CDS 50.0%
! CATTTGAGACACCTGGTGGA+AGG + chr2_3:41621598-41621617 Msa0292400:CDS 50.0%
!! ACACCTGGTGGAAGGTATCA+TGG + chr2_3:41621606-41621625 Msa0292400:CDS 50.0%
CAGCGAGTTTGGCAGAATCA+CGG + chr2_3:41621772-41621791 Msa0292400:three_prime_UTR 50.0%
! CCCTTTTCCAACTGAGGTGA+AGG + chr2_3:41622090-41622109 Msa0292400:three_prime_UTR 50.0%
CCCTTCACCTCAGTTGGAAA+AGG - chr2_3:41622094-41622113 None:intergenic 50.0%
AGAGTAGACGATCCCCGAAG+CGG + chr2_3:41615138-41615157 Msa0292400:intron 55.0%
!! ATGTGGGGCCTTGATGGGTT+TGG + chr2_3:41618324-41618343 Msa0292400:intron 55.0%
!! GGGGAACTGATTTGCCTCAG+AGG + chr2_3:41620620-41620639 Msa0292400:intron 55.0%
CGGGACTCGCATTGCAGATT+TGG + chr2_3:41620798-41620817 Msa0292400:CDS 55.0%
! GCCAGAGAAGCCTTTTGTGG+AGG + chr2_3:41621155-41621174 Msa0292400:CDS 55.0%
CTGCTGCTAGGGTTCCTGAA+AGG + chr2_3:41621541-41621560 Msa0292400:CDS 55.0%
GCTAGGGTTCCTGAAAGGTG+TGG + chr2_3:41621546-41621565 Msa0292400:CDS 55.0%
TCTTCGCTACGTCCGGTGGT+TGG - chr2_3:41614906-41614925 None:intergenic 60.0%
CTCTTCTTCGCTACGTCCGG+TGG - chr2_3:41614910-41614929 None:intergenic 60.0%
TCCCCGAAGCGGAGGATGAA+AGG + chr2_3:41615149-41615168 Msa0292400:intron 60.0%
CCCTTTCATCCTCCGCTTCG+GGG - chr2_3:41615153-41615172 None:intergenic 60.0%
CCCCGAAGCGGAGGATGAAA+GGG + chr2_3:41615150-41615169 Msa0292400:intron 60.0%
CCCCTTTCATCCTCCGCTTC+GGG - chr2_3:41615154-41615173 None:intergenic 60.0%
CCCGAAGCGGAGGATGAAAG+GGG + chr2_3:41615151-41615170 Msa0292400:intron 60.0%
CCCCCTTTCATCCTCCGCTT+CGG - chr2_3:41615155-41615174 None:intergenic 60.0%
CCGAAGCGGAGGATGAAAGG+GGG + chr2_3:41615152-41615171 Msa0292400:intron 60.0%
AGGGTGGCAGTGGACCATAG+TGG - chr2_3:41618289-41618308 None:intergenic 60.0%
! CCTCTTGGTGACTGCCTCTG+AGG - chr2_3:41620637-41620656 None:intergenic 60.0%
CCTCAGAGGCAGTCACCAAG+AGG + chr2_3:41620634-41620653 Msa0292400:CDS 60.0%
GGAGACCGACGATCTCCAAG+AGG + chr2_3:41620739-41620758 Msa0292400:CDS 60.0%
GACCGACGATCTCCAAGAGG+TGG + chr2_3:41620742-41620761 Msa0292400:CDS 60.0%
GTAGACGATCCCCGAAGCGG+AGG + chr2_3:41615141-41615160 Msa0292400:intron 65.0%
GCTGCAGCTGCAGTGCTTGC+AGG + chr2_3:41621501-41621520 Msa0292400:CDS 65.0%
GCAGCTGCAGTGCTTGCAGG+AGG + chr2_3:41621504-41621523 Msa0292400:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 41614859 41622141 41614859 ID=Msa0292400;Name=Msa0292400
chr2_3 mRNA 41614859 41622141 41614859 ID=Msa0292400-mRNA-1;Parent=Msa0292400;Name=Msa0292400-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0.33|0.25|0.75|1|1|4|392|443
chr2_3 exon 41614859 41614959 41614859 ID=Msa0292400-mRNA-1:exon:13369;Parent=Msa0292400-mRNA-1
chr2_3 exon 41616559 41616607 41616559 ID=Msa0292400-mRNA-1:exon:13370;Parent=Msa0292400-mRNA-1
chr2_3 exon 41620287 41620339 41620287 ID=Msa0292400-mRNA-1:exon:13371;Parent=Msa0292400-mRNA-1
chr2_3 exon 41620621 41622141 41620621 ID=Msa0292400-mRNA-1:exon:13372;Parent=Msa0292400-mRNA-1
chr2_3 CDS 41614859 41614959 41614859 ID=Msa0292400-mRNA-1:cds;Parent=Msa0292400-mRNA-1
chr2_3 CDS 41616559 41616607 41616559 ID=Msa0292400-mRNA-1:cds;Parent=Msa0292400-mRNA-1
chr2_3 CDS 41620287 41620339 41620287 ID=Msa0292400-mRNA-1:cds;Parent=Msa0292400-mRNA-1
chr2_3 CDS 41620621 41621749 41620621 ID=Msa0292400-mRNA-1:cds;Parent=Msa0292400-mRNA-1
chr2_3 three_prime_UTR 41621750 41622141 41621750 ID=Msa0292400-mRNA-1:three_prime_utr;Parent=Msa0292400-mRNA-1
Gene Sequence

>Msa0292400

ATGGTATTAGGGGTTCTTTCTAACCTTCTCGAGTTTAAGGGGATCCAACCACCGGACGTAGCGAAGAAGAGTTCGAGGGAAGAGCTTAAAGGATTGTACGGTGAAACTTCTCTTCAAGTTCTTCTGTTTATGCAAAATATTCTCATCAAGAATTGTTGTTCTATCACTTTCTATCATCAAGCATATCAAATGCCAAGATCAAGGGGAACTGATTTGCCTCAGAGGCAGTCACCAAGAGGTACTCATCAGCTTCGGACATCGAGTTCCGACTCAGATCCATCACATCATCATCGACCGGTTACTGAACGAAGTCCAAAACTAGGAGACCGACGATCTCCAAGAGGTGGTACTCAATCCGAGACAGTAAATCAGAAGAAGCTCGGGACTCGCATTGCAGATTTGGAATCACAGCTTGGTCAAGCACAACAAGAGTTGAAAAATTTGAAAAATCAACTATCTTCTGCAGAAGCTGAAAAGAAAAAAGCTGAGGATGAACTAGTGAAGAAAGCTCAATCAGTAGTTCCTGTGGTAGAAAAGTTTCAAGAGAAAAAAAGCATTTCAAAGAAAGCTCAAGAATGTAACATCAAAGCCGAAACAAAACATCAAGATGTTATTATACCTGATGAAAATCAAGAAGAGACTGATGTGTTTGAAGTTCCTATCGAAAAGTTGGCAATTGAATTCAAAAAACATGATGTATTTGAAAAGGAACCTCAAACTCAACCAGCAACATCAGAGCCAGAGAAGCCTTTTGTGGAGGAGCTGACACTTAAAAACGAAGAAATAGCGTCGTTGAAATCAAGTTTGGAGGAAAAAAAGAAGGAACTGGAATCAATGAGTAATGAAAACGATAACCTGAAGAATCAACTGAATGAATCAGTTTCAAAAGTAAAAGCTGCTGAAACAAAGGAAGAAGGAATGACAATGGAGATGAAGAAATTGAGTAAAGAATTGGAAGCTAGTAAAGGGAATGCCGAGAAGTTGAATGAGAAGTTGAAATCTGTGGAAGAAGAAAAGGCAGGGTTAGAATCAGAAATGAAGAAGCTAAGGGTGCAGACAGAACAATGGAGAAAAGCAGCTGATGCTGCAGCTGCAGTGCTTGCAGGAGGTTTTGATATGAGTGCTGCTGCTAGGGTTCCTGAAAGGTGTGGTTCAATGGATAAGCACTTTGGCGGTGGAACATTTGAGACACCTGGTGGAAGGTATCATGGATATGTAGGTTCTCCTGGTATGGTTGATGATCTGGATGATGGTTTTGGTAGTGGAAAAAAGAAGGGTTCTTCTGGTATTAGAATGTTTGGTGATTTATGGAAGAAGAAAGGCCAAAAGTGA

Protein sequence

>Msa0292400

MVLGVLSNLLEFKGIQPPDVAKKSSREELKGLYGETSLQVLLFMQNILIKNCCSITFYHQAYQMPRSRGTDLPQRQSPRGTHQLRTSSSDSDPSHHHRPVTERSPKLGDRRSPRGGTQSETVNQKKLGTRIADLESQLGQAQQELKNLKNQLSSAEAEKKKAEDELVKKAQSVVPVVEKFQEKKSISKKAQECNIKAETKHQDVIIPDENQEETDVFEVPIEKLAIEFKKHDVFEKEPQTQPATSEPEKPFVEELTLKNEEIASLKSSLEEKKKELESMSNENDNLKNQLNESVSKVKAAETKEEGMTMEMKKLSKELEASKGNAEKLNEKLKSVEEEKAGLESEMKKLRVQTEQWRKAADAAAAVLAGGFDMSAAARVPERCGSMDKHFGGGTFETPGGRYHGYVGSPGMVDDLDDGFGSGKKKGSSGIRMFGDLWKKKGQK*