Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1266680 | XP_003609944.1 | 94.606 | 241 | 7 | 1 | 1 | 241 | 1 | 235 | 2.54e-165 | 466 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1266680 | sp|Q94HF1|EIF3K_ORYSJ | 78.475 | 223 | 47 | 1 | 19 | 241 | 5 | 226 | 1.44e-130 | 370 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1266680 | G7JS43 | 94.606 | 241 | 7 | 1 | 1 | 241 | 1 | 235 | 1.21e-165 | 466 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0748350 | Msa1266680 | 0.809789 | 1.590351e-50 | -8.615850e-47 |
| Msa0134580 | Msa1266680 | 0.809583 | 1.761525e-50 | -8.615850e-47 |
| Msa1266680 | Msa1333350 | 0.937936 | 1.535797e-98 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1266680 | MtrunA17_Chr4g0069991 | 94.606 | 241 | 7 | 1 | 1 | 241 | 1 | 235 | 2.34e-169 | 466 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1266680 | AT4G33250.1 | 77.477 | 222 | 45 | 2 | 19 | 240 | 9 | 225 | 4.67e-128 | 362 |
Find 65 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGATCATTAAATTCATTTC+TGG | 0.142858 | 8_2:+71564446 | None:intergenic |
| CTGGAAGGTTTCGTCAGTTC+TGG | 0.234923 | 8_2:-71565656 | Msa1266680:CDS |
| TCGAGATCTGGAAGAATATC+TGG | 0.270145 | 8_2:+71567183 | None:intergenic |
| TGTTCTGTCTCACTATTTAG+AGG | 0.302059 | 8_2:-71565751 | Msa1266680:intron |
| ACCTCAGCAAGCACAGTTCT+AGG | 0.306787 | 8_2:+71564998 | None:intergenic |
| GCACAGTTCTAGGAATCTTT+TGG | 0.326432 | 8_2:+71565008 | None:intergenic |
| GATAGCGAACGCGAAGTACT+AGG | 0.371547 | 8_2:-71567355 | Msa1266680:five_prime_UTR |
| TGAAGAGAGAGTTTCGAAAT+GGG | 0.376778 | 8_2:-71567309 | Msa1266680:exon |
| GGATCATTAAATTCATTTCT+GGG | 0.389991 | 8_2:+71564447 | None:intergenic |
| CGTTGCTCGCATATTGGTTA+AGG | 0.392388 | 8_2:-71566876 | Msa1266680:intron |
| GAATAGGCTATCAATGTAGA+AGG | 0.397813 | 8_2:-71564561 | Msa1266680:intron |
| GTGAAGAGAGAGTTTCGAAA+TGG | 0.406395 | 8_2:-71567310 | Msa1266680:exon |
| AGTTGGCTACTTGGTGTTCA+AGG | 0.416300 | 8_2:+71564520 | None:intergenic |
| CGATGAGTTGACCCGTCCCC+TGG | 0.429270 | 8_2:+71564475 | None:intergenic |
| CCCAACCAGAGTTGGCTACT+TGG | 0.435040 | 8_2:+71564511 | None:intergenic |
| TGGAAGGTTTCGTCAGTTCT+GGG | 0.441956 | 8_2:-71565655 | Msa1266680:CDS |
| AAGAATCATACCACACGTTC+CGG | 0.441975 | 8_2:+71566130 | None:intergenic |
| ATAGAAAATCAGCTAAGAAT+AGG | 0.455595 | 8_2:+71564366 | None:intergenic |
| CGAAAATTATGTCAATGATC+AGG | 0.458244 | 8_2:-71567163 | Msa1266680:intron |
| CTCAAATTGAAGCATACAAT+GGG | 0.458273 | 8_2:+71564270 | None:intergenic |
| AAGAGACATAGGCTGAAGTC+TGG | 0.460902 | 8_2:+71566160 | None:intergenic |
| TCCTTGCTGTTGTACTTGTA+CGG | 0.463786 | 8_2:+71567266 | None:intergenic |
| ACAACAGCAAGGACAAGGAC+AGG | 0.464338 | 8_2:-71567256 | Msa1266680:CDS |
| CTCAATAACCCAACCAGAGT+TGG | 0.468021 | 8_2:+71564503 | None:intergenic |
| AATTATTGCAGGATTTGAGC+AGG | 0.473491 | 8_2:-71565071 | Msa1266680:intron |
| CTTCTCTTCTTCAGACTGGA+AGG | 0.475180 | 8_2:-71565671 | Msa1266680:intron |
| CATATAGTTGAAGCTGTGCC+AGG | 0.477852 | 8_2:-71565612 | Msa1266680:intron |
| CTGCCTTCTTCGCCTCTACC+AGG | 0.481697 | 8_2:-71567034 | Msa1266680:intron |
| TCAGATCGTTGCTCGCATAT+TGG | 0.484728 | 8_2:-71566882 | Msa1266680:CDS |
| CAATGTAGAAGGTTTATCCT+TGG | 0.488911 | 8_2:-71564550 | Msa1266680:CDS |
| CACTGCAGATAGTGTACCAT+TGG | 0.497181 | 8_2:-71564409 | Msa1266680:CDS |
| CATTAAATTCATTTCTGGGA+AGG | 0.506668 | 8_2:+71564451 | None:intergenic |
| GAACATGAATCGCATAGCCT+TGG | 0.508528 | 8_2:+71565044 | None:intergenic |
| TATTGAGAAAAGCCAGGGGA+CGG | 0.514612 | 8_2:-71564487 | Msa1266680:CDS |
| CCAAGTAGCCAACTCTGGTT+GGG | 0.517284 | 8_2:-71564511 | Msa1266680:CDS |
| TTGGGTTATTGAGAAAAGCC+AGG | 0.525809 | 8_2:-71564493 | Msa1266680:CDS |
| GAAGGCAGAGATTTGATTCG+AGG | 0.526051 | 8_2:+71567049 | None:intergenic |
| ATAGCGAACGCGAAGTACTA+GGG | 0.534033 | 8_2:-71567354 | Msa1266680:five_prime_UTR |
| ACCAAGTAGCCAACTCTGGT+TGG | 0.542756 | 8_2:-71564512 | Msa1266680:CDS |
| TCTCAAATTGAAGCATACAA+TGG | 0.545357 | 8_2:+71564269 | None:intergenic |
| AATTGAAGCATACAATGGGA+TGG | 0.554475 | 8_2:+71564274 | None:intergenic |
| ATTGAGAAAAGCCAGGGGAC+GGG | 0.563107 | 8_2:-71564486 | Msa1266680:CDS |
| GGATTTGAGCAGGCAATCCA+AGG | 0.567214 | 8_2:-71565061 | Msa1266680:CDS |
| TACCATTGGAGCACATTAGA+CGG | 0.570341 | 8_2:-71564395 | Msa1266680:CDS |
| TGGAGCTGGCATAGCCATGA+GGG | 0.570416 | 8_2:+71566180 | None:intergenic |
| TCAATTTGAGAATTCATGAA+CGG | 0.571032 | 8_2:-71564257 | Msa1266680:three_prime_UTR |
| ATACCTGGTAGAGGCGAAGA+AGG | 0.571105 | 8_2:+71567031 | None:intergenic |
| GTGTTCAAGGAATTTGTCCA+AGG | 0.573518 | 8_2:+71564533 | None:intergenic |
| CATAGGCTGAAGTCTGGAGC+TGG | 0.575628 | 8_2:+71566166 | None:intergenic |
| GAACACCAAGTAGCCAACTC+TGG | 0.578457 | 8_2:-71564516 | Msa1266680:CDS |
| AGAAAATGGATACCTGGTAG+AGG | 0.583966 | 8_2:+71567022 | None:intergenic |
| TGGGTTATTGAGAAAAGCCA+GGG | 0.586311 | 8_2:-71564492 | Msa1266680:CDS |
| ATTGAAGCATACAATGGGAT+GGG | 0.587058 | 8_2:+71564275 | None:intergenic |
| ATCCGTCTAATGTGCTCCAA+TGG | 0.587256 | 8_2:+71564393 | None:intergenic |
| GAGCTGTTCGACAGTGTAAG+CGG | 0.592715 | 8_2:+71567227 | None:intergenic |
| TCCTAGAACTGTGCTTGCTG+AGG | 0.608721 | 8_2:-71564999 | Msa1266680:intron |
| CAACAGCAAGGACAAGGACA+GGG | 0.614854 | 8_2:-71567255 | Msa1266680:CDS |
| CAAGTACAACAGCAAGGACA+AGG | 0.618746 | 8_2:-71567261 | Msa1266680:CDS |
| TCGCTATCTTACCACTCACA+AGG | 0.620802 | 8_2:+71567370 | None:intergenic |
| CTGTGAATATTAGCAAATGG+AGG | 0.623742 | 8_2:-71565793 | Msa1266680:intron |
| CGCTATCTTACCACTCACAA+GGG | 0.651512 | 8_2:+71567371 | None:intergenic |
| CTGGAGCTGGCATAGCCATG+AGG | 0.661849 | 8_2:+71566179 | None:intergenic |
| CAGCAAGGACAAGGACAGGG+AGG | 0.673719 | 8_2:-71567252 | Msa1266680:CDS |
| GCCGTACAAGTACAACAGCA+AGG | 0.674180 | 8_2:-71567267 | Msa1266680:CDS |
| GGGTTATTGAGAAAAGCCAG+GGG | 0.740421 | 8_2:-71564491 | Msa1266680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACAATTTTAAAATGATTAAT+AGG | - | chr8_2:71564590-71564609 | Msa1266680:intron | 10.0% |
| !!! | ATTATTTTATCTACTAATAG+TGG | + | chr8_2:71565059-71565078 | None:intergenic | 15.0% |
| !!! | ATTTGGTTTTGTTTTTTAAT+AGG | - | chr8_2:71565353-71565372 | Msa1266680:intron | 15.0% |
| !! | ACAAAAATTAATGAACAAAA+GGG | + | chr8_2:71565740-71565759 | None:intergenic | 15.0% |
| !! | AACAAAAATTAATGAACAAA+AGG | + | chr8_2:71565741-71565760 | None:intergenic | 15.0% |
| !!! | TAAATGATTCTTGAAAATTT+TGG | - | chr8_2:71566768-71566787 | Msa1266680:intron | 15.0% |
| !!! | TTTTTTTGAACAAGAAATTT+TGG | - | chr8_2:71566808-71566827 | Msa1266680:intron | 15.0% |
| !! | CAAGTTTAACAAAAAATAAA+TGG | + | chr8_2:71566976-71566995 | None:intergenic | 15.0% |
| !!! | ATTTTTTGTTAAACTTGAAT+AGG | - | chr8_2:71566979-71566998 | Msa1266680:intron | 15.0% |
| !! | AATGACGATTAATAAGAAAA+TGG | + | chr8_2:71564551-71564570 | None:intergenic | 20.0% |
| !! | TTATGAAAATAAGCTGAAAA+CGG | + | chr8_2:71565146-71565165 | None:intergenic | 20.0% |
| !! | TACTATTACAATTGACTATT+AGG | + | chr8_2:71565558-71565577 | None:intergenic | 20.0% |
| !!! | GTAATAGTATGAATTTTACT+TGG | - | chr8_2:71565569-71565588 | Msa1266680:intron | 20.0% |
| !!! | TTACTTTAGAAAATTATTGC+AGG | - | chr8_2:71566474-71566493 | Msa1266680:intron | 20.0% |
| !! | ATTTAAATGGACAAAACAAA+AGG | + | chr8_2:71566587-71566606 | None:intergenic | 20.0% |
| ! | ATATGGATGATAAAGAAGAA+AGG | + | chr8_2:71564422-71564441 | None:intergenic | 25.0% |
| ! | ATCATCCATATCACTTAATT+AGG | - | chr8_2:71564431-71564450 | Msa1266680:CDS | 25.0% |
| ! | TCATCCATATCACTTAATTA+GGG | - | chr8_2:71564432-71564451 | Msa1266680:CDS | 25.0% |
| ! | TAAACCCTAATTAAGTGATA+TGG | + | chr8_2:71564439-71564458 | None:intergenic | 25.0% |
| !! | TCAATTCCAATTATTTCTTC+AGG | - | chr8_2:71564465-71564484 | Msa1266680:CDS | 25.0% |
| ! | ATGAAACCTGAAGAAATAAT+TGG | + | chr8_2:71564474-71564493 | None:intergenic | 25.0% |
| ! | TTAATAAGAAAATGGATACC+TGG | + | chr8_2:71564543-71564562 | None:intergenic | 25.0% |
| !!! | CACTATTTTAGTAAATGATG+CGG | + | chr8_2:71564898-71564917 | None:intergenic | 25.0% |
| ! | TTATCACTTGCTCAAATATT+TGG | - | chr8_2:71565336-71565355 | Msa1266680:intron | 25.0% |
| ! | TTAGATGTCTATAATTGAGA+AGG | - | chr8_2:71565531-71565550 | Msa1266680:intron | 25.0% |
| ! | TATATCGAGTAATGCTAAAT+AGG | + | chr8_2:71565706-71565725 | None:intergenic | 25.0% |
| ! | TTACTGTGAATATTAGCAAA+TGG | - | chr8_2:71565760-71565779 | Msa1266680:CDS | 25.0% |
| ! | ATTAAATCAGTATAATCACC+TGG | + | chr8_2:71565965-71565984 | None:intergenic | 25.0% |
| ! | AGACTTAGAAAAACTATTAG+AGG | - | chr8_2:71566057-71566076 | Msa1266680:intron | 25.0% |
| ! | TATTAGAGGATCTATTAAGA+AGG | - | chr8_2:71566071-71566090 | Msa1266680:intron | 25.0% |
| ! | CTTGTCATTGATATGTTATT+GGG | - | chr8_2:71566301-71566320 | Msa1266680:intron | 25.0% |
| !!! | ATTGATTTTTTGAAAACCTG+TGG | - | chr8_2:71566368-71566387 | Msa1266680:intron | 25.0% |
| !!! | TTGATTTTTTGAAAACCTGT+GGG | - | chr8_2:71566369-71566388 | Msa1266680:intron | 25.0% |
| !! | TGTTTTGTCCATTTAAATGT+TGG | - | chr8_2:71566589-71566608 | Msa1266680:intron | 25.0% |
| ! | TAAACGAACCAACATTTAAA+TGG | + | chr8_2:71566600-71566619 | None:intergenic | 25.0% |
| ! | TATTGTTTCGTTTATTCCTT+TGG | - | chr8_2:71566742-71566761 | Msa1266680:intron | 25.0% |
| ! | ATTGTTTCGTTTATTCCTTT+GGG | - | chr8_2:71566743-71566762 | Msa1266680:intron | 25.0% |
| !! | ATGATTCTTGAAAATTTTGG+CGG | - | chr8_2:71566771-71566790 | Msa1266680:intron | 25.0% |
| !! | TTTTGAACAAGAAATTTTGG+CGG | - | chr8_2:71566811-71566830 | Msa1266680:intron | 25.0% |
| ! | GAAATCAACTGATATCATAT+AGG | + | chr8_2:71566925-71566944 | None:intergenic | 25.0% |
| ! | GGATCATTAAATTCATTTCT+GGG | + | chr8_2:71567112-71567131 | None:intergenic | 25.0% |
| ! | TGGATCATTAAATTCATTTC+TGG | + | chr8_2:71567113-71567132 | None:intergenic | 25.0% |
| ! | ATAGAAAATCAGCTAAGAAT+AGG | + | chr8_2:71567193-71567212 | None:intergenic | 25.0% |
| !!! | TATTCTTAGCTGATTTTCTA+TGG | - | chr8_2:71567192-71567211 | Msa1266680:CDS | 25.0% |
| !!! | ATTCTTAGCTGATTTTCTAT+GGG | - | chr8_2:71567193-71567212 | Msa1266680:CDS | 25.0% |
| ! | TCAATTTGAGAATTCATGAA+CGG | - | chr8_2:71567299-71567318 | Msa1266680:exon | 25.0% |
| ! | ACATTAATGCAAAAAGTCAA+GGG | + | chr8_2:71567338-71567357 | None:intergenic | 25.0% |
| ! | AACATTAATGCAAAAAGTCA+AGG | + | chr8_2:71567339-71567358 | None:intergenic | 25.0% |
| !!! | AGTAACTTGCTTTTTGAAAT+AGG | + | chr8_2:71567381-71567400 | None:intergenic | 25.0% |
| !! | TTGACATAATTTTCGAGATC+TGG | + | chr8_2:71564388-71564407 | None:intergenic | 30.0% |
| CGAAAATTATGTCAATGATC+AGG | - | chr8_2:71564393-71564412 | Msa1266680:CDS | 30.0% | |
| AACCAAAAATCATATGCCTA+AGG | - | chr8_2:71564741-71564760 | Msa1266680:intron | 30.0% | |
| ACCAAAAATCATATGCCTAA+GGG | - | chr8_2:71564742-71564761 | Msa1266680:intron | 30.0% | |
| ! | AATACCTATATCTAAAGCTG+TGG | - | chr8_2:71564998-71565017 | Msa1266680:intron | 30.0% |
| !! | TACTAATAGTGGACAAATTG+GGG | + | chr8_2:71565048-71565067 | None:intergenic | 30.0% |
| !! | CTACTAATAGTGGACAAATT+GGG | + | chr8_2:71565049-71565068 | None:intergenic | 30.0% |
| !! | TCTACTAATAGTGGACAAAT+TGG | + | chr8_2:71565050-71565069 | None:intergenic | 30.0% |
| AGTGATAATATCAGCTATCT+TGG | + | chr8_2:71565324-71565343 | None:intergenic | 30.0% | |
| TGTTCTCATGCATAATTGAT+TGG | - | chr8_2:71565482-71565501 | Msa1266680:intron | 30.0% | |
| CTCAATTATAGACATCTAAC+AGG | + | chr8_2:71565530-71565549 | None:intergenic | 30.0% | |
| ! | TGGTTTTTGATAAATCACTG+TGG | - | chr8_2:71566124-71566143 | Msa1266680:intron | 30.0% |
| ATATGACAAGCATTTCAAGA+TGG | - | chr8_2:71566264-71566283 | Msa1266680:intron | 30.0% | |
| GCTTGTCATTGATATGTTAT+TGG | - | chr8_2:71566300-71566319 | Msa1266680:intron | 30.0% | |
| !!! | TGATTTTTTGAAAACCTGTG+GGG | - | chr8_2:71566370-71566389 | Msa1266680:intron | 30.0% |
| !! | TGGGGATTTTTGTTTATCTT+TGG | - | chr8_2:71566388-71566407 | Msa1266680:intron | 30.0% |
| !! | GTTTAGTATTGACTCTGATT+TGG | - | chr8_2:71566410-71566429 | Msa1266680:intron | 30.0% |
| !!! | AGTTTTGGAGAATTAATGCA+AGG | + | chr8_2:71566671-71566690 | None:intergenic | 30.0% |
| TCCAAAACTTAGTTTAACTC+CGG | - | chr8_2:71566682-71566701 | Msa1266680:intron | 30.0% | |
| TTGTTTCGTTTATTCCTTTG+GGG | - | chr8_2:71566744-71566763 | Msa1266680:intron | 30.0% | |
| ! | TTTCTCAAATACAAGAGTGT+TGG | - | chr8_2:71566859-71566878 | Msa1266680:intron | 30.0% |
| ! | CATTAAATTCATTTCTGGGA+AGG | + | chr8_2:71567108-71567127 | None:intergenic | 30.0% |
| ! | GCAGTGTTTTTCTTCAAAAT+TGG | + | chr8_2:71567133-71567152 | None:intergenic | 30.0% |
| !! | TTCTTAGCTGATTTTCTATG+GGG | - | chr8_2:71567194-71567213 | Msa1266680:CDS | 30.0% |
| ! | TCTCAAATTCGTACATTTTC+TGG | + | chr8_2:71567235-71567254 | None:intergenic | 30.0% |
| CTCAAATTGAAGCATACAAT+GGG | + | chr8_2:71567289-71567308 | None:intergenic | 30.0% | |
| TCTCAAATTGAAGCATACAA+TGG | + | chr8_2:71567290-71567309 | None:intergenic | 30.0% | |
| CATTAATGCAAAAAGTCAAG+GGG | + | chr8_2:71567337-71567356 | None:intergenic | 30.0% | |
| TGAAGAGAGAGTTTCGAAAT+GGG | - | chr8_2:71564247-71564266 | Msa1266680:three_prime_UTR | 35.0% | |
| ! | ATCTGAGAACTCATTTTCTC+AGG | + | chr8_2:71564660-71564679 | None:intergenic | 35.0% |
| ! | TCCCTTAGGCATATGATTTT+TGG | + | chr8_2:71564746-71564765 | None:intergenic | 35.0% |
| ! | TCATATGCCTAAGGGATTTT+TGG | - | chr8_2:71564750-71564769 | Msa1266680:intron | 35.0% |
| !! | ATTGCCACAGCTTTAGATAT+AGG | + | chr8_2:71565005-71565024 | None:intergenic | 35.0% |
| ! | ATATCTAAAGCTGTGGCAAT+AGG | - | chr8_2:71565005-71565024 | Msa1266680:CDS | 35.0% |
| !! | GCTGTTTTCATAAGCTATCT+CGG | + | chr8_2:71565174-71565193 | None:intergenic | 35.0% |
| GCTTATCATGATAAGCACTT+TGG | - | chr8_2:71565262-71565281 | Msa1266680:intron | 35.0% | |
| !!! | TGTTTTTTAATAGGCCCTCA+TGG | - | chr8_2:71565362-71565381 | Msa1266680:intron | 35.0% |
| !! | CCTATGTCTCTTTTTGATTC+CGG | - | chr8_2:71565407-71565426 | Msa1266680:intron | 35.0% |
| TTATAGACATCTAACAGGAG+TGG | + | chr8_2:71565525-71565544 | None:intergenic | 35.0% | |
| ! | GTCAATCTTTTGTGTTACAC+AGG | - | chr8_2:71565591-71565610 | Msa1266680:intron | 35.0% |
| TCGAGTAATGCTAAATAGGA+AGG | + | chr8_2:71565702-71565721 | None:intergenic | 35.0% | |
| CTGTGAATATTAGCAAATGG+AGG | - | chr8_2:71565763-71565782 | Msa1266680:CDS | 35.0% | |
| TGTTCTGTCTCACTATTTAG+AGG | - | chr8_2:71565805-71565824 | Msa1266680:intron | 35.0% | |
| TATTCTTCTCTTCTTCAGAC+TGG | - | chr8_2:71565881-71565900 | Msa1266680:intron | 35.0% | |
| GTTTCTCTTATAGTTTCTCC+AGG | - | chr8_2:71566005-71566024 | Msa1266680:intron | 35.0% | |
| ! | TGATGAGTTGGAAAAAGACA+TGG | - | chr8_2:71566104-71566123 | Msa1266680:intron | 35.0% |
| ATCAGATATTTGTAACCGCA+AGG | + | chr8_2:71566244-71566263 | None:intergenic | 35.0% | |
| AGATAAACAAAAATCCCCAC+AGG | + | chr8_2:71566387-71566406 | None:intergenic | 35.0% | |
| !! | TTGACTCTGATTTGGCTTAT+AGG | - | chr8_2:71566418-71566437 | Msa1266680:intron | 35.0% |
| AATTATTGCAGGATTTGAGC+AGG | - | chr8_2:71566485-71566504 | Msa1266680:intron | 35.0% | |
| ! | AGGAATCTTTTGGTAAGTCA+AGG | + | chr8_2:71566541-71566560 | None:intergenic | 35.0% |
| ! | ACCGGAGTTAAACTAAGTTT+TGG | + | chr8_2:71566686-71566705 | None:intergenic | 35.0% |
| TATGCGTTCATTCATCAAAC+CGG | + | chr8_2:71566704-71566723 | None:intergenic | 35.0% | |
| CAAGAATCATTTAACCCCAA+AGG | + | chr8_2:71566761-71566780 | None:intergenic | 35.0% | |
| GAATAGGCTATCAATGTAGA+AGG | - | chr8_2:71566995-71567014 | Msa1266680:intron | 35.0% | |
| CAATGTAGAAGGTTTATCCT+TGG | - | chr8_2:71567006-71567025 | Msa1266680:intron | 35.0% | |
| !! | TCTTAGCTGATTTTCTATGG+GGG | - | chr8_2:71567195-71567214 | Msa1266680:CDS | 35.0% |
| ATTGAAGCATACAATGGGAT+GGG | + | chr8_2:71567284-71567303 | None:intergenic | 35.0% | |
| AATTGAAGCATACAATGGGA+TGG | + | chr8_2:71567285-71567304 | None:intergenic | 35.0% | |
| GTGAAGAGAGAGTTTCGAAA+TGG | - | chr8_2:71564246-71564265 | Msa1266680:three_prime_UTR | 40.0% | |
| !! | TCCTTGCTGTTGTACTTGTA+CGG | + | chr8_2:71564293-71564312 | None:intergenic | 40.0% |
| TCGAGATCTGGAAGAATATC+TGG | + | chr8_2:71564376-71564395 | None:intergenic | 40.0% | |
| AGAAAATGGATACCTGGTAG+AGG | + | chr8_2:71564537-71564556 | None:intergenic | 40.0% | |
| !! | TGCCTAAGGGATTTTTGGAT+TGG | - | chr8_2:71564755-71564774 | Msa1266680:intron | 40.0% |
| AGCCAATCCAAAAATCCCTT+AGG | + | chr8_2:71564760-71564779 | None:intergenic | 40.0% | |
| !! | AGAGTTTGTTGTGCTTCTTG+TGG | - | chr8_2:71564852-71564871 | Msa1266680:intron | 40.0% |
| ! | TTACCCATTGTTGGTTGGTA+AGG | - | chr8_2:71564964-71564983 | Msa1266680:intron | 40.0% |
| ! | TGTTTGGGATTCAGAAGTGA+AGG | + | chr8_2:71565084-71565103 | None:intergenic | 40.0% |
| TGAATCCCAAACAGTTCGAT+TGG | - | chr8_2:71565091-71565110 | Msa1266680:intron | 40.0% | |
| GAATCCCAAACAGTTCGATT+GGG | - | chr8_2:71565092-71565111 | Msa1266680:intron | 40.0% | |
| AATCCCAAACAGTTCGATTG+GGG | - | chr8_2:71565093-71565112 | Msa1266680:intron | 40.0% | |
| CCGGAATCAAAAAGAGACAT+AGG | + | chr8_2:71565410-71565429 | None:intergenic | 40.0% | |
| AAGAATCATACCACACGTTC+CGG | + | chr8_2:71565429-71565448 | None:intergenic | 40.0% | |
| TCTTTGAACTGCGTAAGTCA+TGG | + | chr8_2:71565848-71565867 | None:intergenic | 40.0% | |
| TCCCCTAAATCACTAGAAGT+AGG | - | chr8_2:71566031-71566050 | Msa1266680:intron | 40.0% | |
| CCCTACTTCTAGTGATTTAG+GGG | + | chr8_2:71566035-71566054 | None:intergenic | 40.0% | |
| CCCCTAAATCACTAGAAGTA+GGG | - | chr8_2:71566032-71566051 | Msa1266680:intron | 40.0% | |
| CCCCTACTTCTAGTGATTTA+GGG | + | chr8_2:71566036-71566055 | None:intergenic | 40.0% | |
| CCCTAAATCACTAGAAGTAG+GGG | - | chr8_2:71566033-71566052 | Msa1266680:intron | 40.0% | |
| TCCCCTACTTCTAGTGATTT+AGG | + | chr8_2:71566037-71566056 | None:intergenic | 40.0% | |
| GGATCTAGAGATTGATGAGT+TGG | - | chr8_2:71566092-71566111 | Msa1266680:intron | 40.0% | |
| TGTTAATTGCGTCGTGTAAC+TGG | - | chr8_2:71566214-71566233 | Msa1266680:intron | 40.0% | |
| GTTAATTGCGTCGTGTAACT+GGG | - | chr8_2:71566215-71566234 | Msa1266680:intron | 40.0% | |
| !!! | GCACAGTTCTAGGAATCTTT+TGG | + | chr8_2:71566551-71566570 | None:intergenic | 40.0% |
| GTGTTCAAGGAATTTGTCCA+AGG | + | chr8_2:71567026-71567045 | None:intergenic | 40.0% | |
| TTGGGTTATTGAGAAAAGCC+AGG | - | chr8_2:71567063-71567082 | Msa1266680:CDS | 40.0% | |
| TGGGTTATTGAGAAAAGCCA+GGG | - | chr8_2:71567064-71567083 | Msa1266680:CDS | 40.0% | |
| TACCATTGGAGCACATTAGA+CGG | - | chr8_2:71567161-71567180 | Msa1266680:intron | 40.0% | |
| ! | TCGTTCTTTTCCCTTGTGAG+TGG | - | chr8_2:71564175-71564194 | Msa1266680:three_prime_UTR | 45.0% |
| CGCTATCTTACCACTCACAA+GGG | + | chr8_2:71564188-71564207 | None:intergenic | 45.0% | |
| TCGCTATCTTACCACTCACA+AGG | + | chr8_2:71564189-71564208 | None:intergenic | 45.0% | |
| ! | ATAGCGAACGCGAAGTACTA+GGG | - | chr8_2:71564202-71564221 | Msa1266680:three_prime_UTR | 45.0% |
| CAAGTACAACAGCAAGGACA+AGG | - | chr8_2:71564295-71564314 | Msa1266680:three_prime_UTR | 45.0% | |
| ! | GAAGGCAGAGATTTGATTCG+AGG | + | chr8_2:71564510-71564529 | None:intergenic | 45.0% |
| TCAGATCGTTGCTCGCATAT+TGG | - | chr8_2:71564674-71564693 | Msa1266680:intron | 45.0% | |
| ! | CGTTGCTCGCATATTGGTTA+AGG | - | chr8_2:71564680-71564699 | Msa1266680:intron | 45.0% |
| ! | ATGGGCGGTTTTGCTAGAAT+AGG | + | chr8_2:71564933-71564952 | None:intergenic | 45.0% |
| CAACCAACAATGGGTAACGA+TGG | + | chr8_2:71564961-71564980 | None:intergenic | 45.0% | |
| CATCGTTACCCATTGTTGGT+TGG | - | chr8_2:71564959-71564978 | Msa1266680:intron | 45.0% | |
| ACGCCTTACCAACCAACAAT+GGG | + | chr8_2:71564970-71564989 | None:intergenic | 45.0% | |
| TACGCCTTACCAACCAACAA+TGG | + | chr8_2:71564971-71564990 | None:intergenic | 45.0% | |
| ATCCCAAACAGTTCGATTGG+GGG | - | chr8_2:71565094-71565113 | Msa1266680:intron | 45.0% | |
| !! | TCAGCTATCTTGGCTCTGTT+TGG | + | chr8_2:71565314-71565333 | None:intergenic | 45.0% |
| AAGAGACATAGGCTGAAGTC+TGG | + | chr8_2:71565399-71565418 | None:intergenic | 45.0% | |
| !! | CTTTTTGATTCCGGAACGTG+TGG | - | chr8_2:71565416-71565435 | Msa1266680:intron | 45.0% |
| CTTCTCTTCTTCAGACTGGA+AGG | - | chr8_2:71565885-71565904 | Msa1266680:intron | 45.0% | |
| TGGAAGGTTTCGTCAGTTCT+GGG | - | chr8_2:71565901-71565920 | Msa1266680:intron | 45.0% | |
| CATATAGTTGAAGCTGTGCC+AGG | - | chr8_2:71565944-71565963 | Msa1266680:intron | 45.0% | |
| TAGTGATTTAGGGGAAGACC+TGG | + | chr8_2:71566026-71566045 | None:intergenic | 45.0% | |
| ATGTAGCCAACCTCACTTAG+TGG | - | chr8_2:71566160-71566179 | Msa1266680:CDS | 45.0% | |
| TGTAGCCAACCTCACTTAGT+GGG | - | chr8_2:71566161-71566180 | Msa1266680:CDS | 45.0% | |
| CTTATCCCACTAAGTGAGGT+TGG | + | chr8_2:71566169-71566188 | None:intergenic | 45.0% | |
| CAACCTCACTTAGTGGGATA+AGG | - | chr8_2:71566167-71566186 | Msa1266680:CDS | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+AGG | + | chr8_2:71566173-71566192 | None:intergenic | 45.0% |
| TCACTTAGTGGGATAAGGCT+TGG | - | chr8_2:71566172-71566191 | Msa1266680:CDS | 45.0% | |
| GAACATGAATCGCATAGCCT+TGG | + | chr8_2:71566515-71566534 | None:intergenic | 45.0% | |
| !! | AGTTGGCTACTTGGTGTTCA+AGG | + | chr8_2:71567039-71567058 | None:intergenic | 45.0% |
| CTCAATAACCCAACCAGAGT+TGG | + | chr8_2:71567056-71567075 | None:intergenic | 45.0% | |
| GGGTTATTGAGAAAAGCCAG+GGG | - | chr8_2:71567065-71567084 | Msa1266680:CDS | 45.0% | |
| TATTGAGAAAAGCCAGGGGA+CGG | - | chr8_2:71567069-71567088 | Msa1266680:CDS | 45.0% | |
| CACTGCAGATAGTGTACCAT+TGG | - | chr8_2:71567147-71567166 | Msa1266680:intron | 45.0% | |
| ATCCGTCTAATGTGCTCCAA+TGG | + | chr8_2:71567166-71567185 | None:intergenic | 45.0% | |
| ! | GATAGCGAACGCGAAGTACT+AGG | - | chr8_2:71564201-71564220 | Msa1266680:three_prime_UTR | 50.0% |
| GCCGTACAAGTACAACAGCA+AGG | - | chr8_2:71564289-71564308 | Msa1266680:three_prime_UTR | 50.0% | |
| ACAACAGCAAGGACAAGGAC+AGG | - | chr8_2:71564300-71564319 | Msa1266680:three_prime_UTR | 50.0% | |
| CAACAGCAAGGACAAGGACA+GGG | - | chr8_2:71564301-71564320 | Msa1266680:three_prime_UTR | 50.0% | |
| GAGCTGTTCGACAGTGTAAG+CGG | + | chr8_2:71564332-71564351 | None:intergenic | 50.0% | |
| ATACCTGGTAGAGGCGAAGA+AGG | + | chr8_2:71564528-71564547 | None:intergenic | 50.0% | |
| !! | TGGGTAACGATGGCTCTGAT+GGG | + | chr8_2:71564951-71564970 | None:intergenic | 50.0% |
| !! | ATGGGTAACGATGGCTCTGA+TGG | + | chr8_2:71564952-71564971 | None:intergenic | 50.0% |
| GAGCCATCGTTACCCATTGT+TGG | - | chr8_2:71564955-71564974 | Msa1266680:intron | 50.0% | |
| GACCCCCAATCGAACTGTTT+GGG | + | chr8_2:71565099-71565118 | None:intergenic | 50.0% | |
| TGACCCCCAATCGAACTGTT+TGG | + | chr8_2:71565100-71565119 | None:intergenic | 50.0% | |
| CTGGAAGGTTTCGTCAGTTC+TGG | - | chr8_2:71565900-71565919 | Msa1266680:intron | 50.0% | |
| GGATTTGAGCAGGCAATCCA+AGG | - | chr8_2:71566495-71566514 | Msa1266680:intron | 50.0% | |
| ! | TCCTAGAACTGTGCTTGCTG+AGG | - | chr8_2:71566557-71566576 | Msa1266680:intron | 50.0% |
| ACCTCAGCAAGCACAGTTCT+AGG | + | chr8_2:71566561-71566580 | None:intergenic | 50.0% | |
| GAACACCAAGTAGCCAACTC+TGG | - | chr8_2:71567040-71567059 | Msa1266680:CDS | 50.0% | |
| ACCAAGTAGCCAACTCTGGT+TGG | - | chr8_2:71567044-71567063 | Msa1266680:CDS | 50.0% | |
| CCAAGTAGCCAACTCTGGTT+GGG | - | chr8_2:71567045-71567064 | Msa1266680:CDS | 50.0% | |
| ATTGAGAAAAGCCAGGGGAC+GGG | - | chr8_2:71567070-71567089 | Msa1266680:CDS | 50.0% | |
| !! | GTAACGATGGCTCTGATGGG+CGG | + | chr8_2:71564948-71564967 | None:intergenic | 55.0% |
| TGGAGCTGGCATAGCCATGA+GGG | + | chr8_2:71565379-71565398 | None:intergenic | 55.0% | |
| ! | CATAGGCTGAAGTCTGGAGC+TGG | + | chr8_2:71565393-71565412 | None:intergenic | 55.0% |
| CGTGTAACTGGGAAGCCTTG+CGG | - | chr8_2:71566226-71566245 | Msa1266680:intron | 55.0% | |
| CCCAACCAGAGTTGGCTACT+TGG | + | chr8_2:71567048-71567067 | None:intergenic | 55.0% | |
| CAGCAAGGACAAGGACAGGG+AGG | - | chr8_2:71564304-71564323 | Msa1266680:three_prime_UTR | 60.0% | |
| CTGCCTTCTTCGCCTCTACC+AGG | - | chr8_2:71564522-71564541 | Msa1266680:CDS | 60.0% | |
| CTGGAGCTGGCATAGCCATG+AGG | + | chr8_2:71565380-71565399 | None:intergenic | 60.0% | |
| ! | CGATGAGTTGACCCGTCCCC+TGG | + | chr8_2:71567084-71567103 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 71564173 | 71567405 | 71564173 | ID=Msa1266680;Name=Msa1266680 |
| chr8_2 | mRNA | 71564173 | 71567405 | 71564173 | ID=Msa1266680-mRNA-1;Parent=Msa1266680;Name=Msa1266680-mRNA-1;_AED=0.08;_eAED=0.08;_QI=92|1|1|1|1|1|8|201|241 |
| chr8_2 | exon | 71564173 | 71564577 | 71564173 | ID=Msa1266680-mRNA-1:exon:24042;Parent=Msa1266680-mRNA-1 |
| chr8_2 | exon | 71565000 | 71565082 | 71565000 | ID=Msa1266680-mRNA-1:exon:24041;Parent=Msa1266680-mRNA-1 |
| chr8_2 | exon | 71565613 | 71565679 | 71565613 | ID=Msa1266680-mRNA-1:exon:24040;Parent=Msa1266680-mRNA-1 |
| chr8_2 | exon | 71565752 | 71565802 | 71565752 | ID=Msa1266680-mRNA-1:exon:24039;Parent=Msa1266680-mRNA-1 |
| chr8_2 | exon | 71566141 | 71566203 | 71566141 | ID=Msa1266680-mRNA-1:exon:24038;Parent=Msa1266680-mRNA-1 |
| chr8_2 | exon | 71566877 | 71566927 | 71566877 | ID=Msa1266680-mRNA-1:exon:24037;Parent=Msa1266680-mRNA-1 |
| chr8_2 | exon | 71567035 | 71567091 | 71567035 | ID=Msa1266680-mRNA-1:exon:24036;Parent=Msa1266680-mRNA-1 |
| chr8_2 | exon | 71567164 | 71567405 | 71567164 | ID=Msa1266680-mRNA-1:exon:24035;Parent=Msa1266680-mRNA-1 |
| chr8_2 | five_prime_UTR | 71567314 | 71567405 | 71567314 | ID=Msa1266680-mRNA-1:five_prime_utr;Parent=Msa1266680-mRNA-1 |
| chr8_2 | CDS | 71567164 | 71567313 | 71567164 | ID=Msa1266680-mRNA-1:cds;Parent=Msa1266680-mRNA-1 |
| chr8_2 | CDS | 71567035 | 71567091 | 71567035 | ID=Msa1266680-mRNA-1:cds;Parent=Msa1266680-mRNA-1 |
| chr8_2 | CDS | 71566877 | 71566927 | 71566877 | ID=Msa1266680-mRNA-1:cds;Parent=Msa1266680-mRNA-1 |
| chr8_2 | CDS | 71566141 | 71566203 | 71566141 | ID=Msa1266680-mRNA-1:cds;Parent=Msa1266680-mRNA-1 |
| chr8_2 | CDS | 71565752 | 71565802 | 71565752 | ID=Msa1266680-mRNA-1:cds;Parent=Msa1266680-mRNA-1 |
| chr8_2 | CDS | 71565613 | 71565679 | 71565613 | ID=Msa1266680-mRNA-1:cds;Parent=Msa1266680-mRNA-1 |
| chr8_2 | CDS | 71565000 | 71565082 | 71565000 | ID=Msa1266680-mRNA-1:cds;Parent=Msa1266680-mRNA-1 |
| chr8_2 | CDS | 71564374 | 71564577 | 71564374 | ID=Msa1266680-mRNA-1:cds;Parent=Msa1266680-mRNA-1 |
| chr8_2 | three_prime_UTR | 71564173 | 71564373 | 71564173 | ID=Msa1266680-mRNA-1:three_prime_utr;Parent=Msa1266680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
