Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0748350 | sp|Q9LUQ6|RL192_ARATH | 82.791 | 215 | 31 | 3 | 1 | 215 | 1 | 209 | 7.08e-123 | 349 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0748350 | I3SA92 | 100.000 | 219 | 0 | 0 | 1 | 219 | 1 | 219 | 1.35e-156 | 441 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001760 | Msa0748350 | 0.874417 | 6.865129e-68 | -8.615850e-47 |
| Msa0003330 | Msa0748350 | 0.832917 | 7.190804e-56 | -8.615850e-47 |
| Msa0027590 | Msa0748350 | 0.865310 | 6.479758e-65 | -8.615850e-47 |
| Msa0032780 | Msa0748350 | 0.859894 | 3.015069e-63 | -8.615850e-47 |
| Msa0040220 | Msa0748350 | 0.842082 | 3.213336e-58 | -8.615850e-47 |
| Msa0072570 | Msa0748350 | 0.822443 | 2.362450e-53 | -8.615850e-47 |
| Msa0075350 | Msa0748350 | 0.836711 | 7.971231e-57 | -8.615850e-47 |
| Msa0087910 | Msa0748350 | 0.861969 | 7.061636e-64 | -8.615850e-47 |
| Msa0089540 | Msa0748350 | 0.852264 | 5.172658e-61 | -8.615850e-47 |
| Msa0114600 | Msa0748350 | 0.902616 | 8.077832e-79 | -8.615850e-47 |
| Msa0602900 | Msa0748350 | 0.847660 | 1.004872e-59 | -8.615850e-47 |
| Msa0605890 | Msa0748350 | 0.859457 | 4.081505e-63 | -8.615850e-47 |
| Msa0619230 | Msa0748350 | 0.809757 | 1.616348e-50 | -8.615850e-47 |
| Msa0622230 | Msa0748350 | 0.987735 | 2.409057e-171 | -8.615850e-47 |
| Msa0643960 | Msa0748350 | 0.856835 | 2.458910e-62 | -8.615850e-47 |
| Msa0652160 | Msa0748350 | 0.822628 | 2.140299e-53 | -8.615850e-47 |
| Msa0694400 | Msa0748350 | 0.842650 | 2.272003e-58 | -8.615850e-47 |
| Msa0704860 | Msa0748350 | 0.824767 | 6.753659e-54 | -8.615850e-47 |
| Msa0705800 | Msa0748350 | 0.805207 | 1.491989e-49 | -8.615850e-47 |
| Msa0708630 | Msa0748350 | 0.854375 | 1.283347e-61 | -8.615850e-47 |
| Msa0733410 | Msa0748350 | 0.800284 | 1.548913e-48 | -8.615850e-47 |
| Msa0745970 | Msa0748350 | 0.823095 | 1.665267e-53 | -8.615850e-47 |
| Msa0748350 | Msa0788380 | 0.821375 | 4.175024e-53 | -8.615850e-47 |
| Msa0748350 | Msa0790450 | 0.830083 | 3.585917e-55 | -8.615850e-47 |
| Msa0748350 | Msa0822580 | 0.802710 | 4.930732e-49 | -8.615850e-47 |
| Msa0748350 | Msa0861320 | 0.827389 | 1.607430e-54 | -8.615850e-47 |
| Msa0748350 | Msa0929680 | 0.810130 | 1.343472e-50 | -8.615850e-47 |
| Msa0748350 | Msa0929700 | 0.914347 | 2.133129e-84 | -8.615850e-47 |
| Msa0748350 | Msa0930890 | 0.817119 | 3.889588e-52 | -8.615850e-47 |
| Msa0748350 | Msa1019090 | 0.800539 | 1.374796e-48 | -8.615850e-47 |
| Msa0748350 | Msa1025200 | 0.812750 | 3.622538e-51 | -8.615850e-47 |
| Msa0748350 | Msa1025220 | 0.816997 | 4.144605e-52 | -8.615850e-47 |
| Msa0748350 | Msa1037290 | 0.813497 | 2.484135e-51 | -8.615850e-47 |
| Msa0748350 | Msa1040160 | 0.804551 | 2.045921e-49 | -8.615850e-47 |
| Msa0748350 | Msa1040170 | -0.840682 | 7.503961e-58 | -8.615850e-47 |
| Msa0748350 | Msa1047020 | 0.836300 | 1.014796e-56 | -8.615850e-47 |
| Msa0748350 | Msa1050100 | 0.871922 | 4.723107e-67 | -8.615850e-47 |
| Msa0748350 | Msa1082170 | 0.827993 | 1.150570e-54 | -8.615850e-47 |
| Msa0748350 | Msa1083360 | -0.849565 | 2.979570e-60 | -8.615850e-47 |
| Msa0748350 | Msa1083370 | 0.835778 | 1.376297e-56 | -8.615850e-47 |
| Msa0748350 | Msa1085850 | 0.813597 | 2.362058e-51 | -8.615850e-47 |
| Msa0748350 | Msa1126520 | 0.808683 | 2.745005e-50 | -8.615850e-47 |
| Msa0748350 | Msa1126690 | 0.815270 | 1.007285e-51 | -8.615850e-47 |
| Msa0748350 | Msa1128110 | -0.809289 | 2.036434e-50 | -8.615850e-47 |
| Msa0748350 | Msa1131030 | 0.845059 | 5.141985e-59 | -8.615850e-47 |
| Msa0748350 | Msa1164150 | 0.847064 | 1.464471e-59 | -8.615850e-47 |
| Msa0748350 | Msa1165640 | 0.988115 | 9.091121e-173 | -8.615850e-47 |
| Msa0748350 | Msa1166670 | 0.837408 | 5.291008e-57 | -8.615850e-47 |
| Msa0748350 | Msa1186030 | 0.838470 | 2.822205e-57 | -8.615850e-47 |
| Msa0748350 | Msa1203560 | 0.802239 | 6.166684e-49 | -8.615850e-47 |
| Msa0748350 | Msa1206240 | 0.835384 | 1.731624e-56 | -8.615850e-47 |
| Msa0748350 | Msa1220580 | 0.806054 | 9.911223e-50 | -8.615850e-47 |
| Msa0748350 | Msa1235950 | 0.823582 | 1.282039e-53 | -8.615850e-47 |
| Msa0748350 | Msa1235980 | 0.830766 | 2.441675e-55 | -8.615850e-47 |
| Msa0748350 | Msa1237040 | 0.807282 | 5.454766e-50 | -8.615850e-47 |
| Msa0748350 | Msa1240270 | 0.806790 | 6.930621e-50 | -8.615850e-47 |
| Msa0748350 | Msa1255850 | 0.806064 | 9.861448e-50 | -8.615850e-47 |
| Msa0748350 | Msa1258540 | 0.812190 | 4.802966e-51 | -8.615850e-47 |
| Msa0748350 | Msa1266680 | 0.809789 | 1.590351e-50 | -8.615850e-47 |
| Msa0748350 | Msa1284060 | 0.808215 | 3.455522e-50 | -8.615850e-47 |
| Msa0748350 | Msa1311400 | 0.818186 | 2.235293e-52 | -8.615850e-47 |
| Msa0748350 | Msa1341780 | 0.834745 | 2.508749e-56 | -8.615850e-47 |
| Msa0748350 | Msa1351020 | 0.840981 | 6.266374e-58 | -8.615850e-47 |
| Msa0748350 | Msa1351920 | -0.833260 | 5.904969e-56 | -8.615850e-47 |
| Msa0748350 | Msa1353300 | 0.822952 | 1.798716e-53 | -8.615850e-47 |
| Msa0748350 | Msa1362210 | 0.854157 | 1.483450e-61 | -8.615850e-47 |
| Msa0748350 | Msa1363910 | 0.818497 | 1.900564e-52 | -8.615850e-47 |
| Msa0748350 | Msa1366730 | 0.806433 | 8.246617e-50 | -8.615850e-47 |
| Msa0748350 | Msa1367540 | 0.818493 | 1.904316e-52 | -8.615850e-47 |
| Msa0748350 | Msa1368920 | 0.815026 | 1.141345e-51 | -8.615850e-47 |
| Msa0748350 | Msa1371410 | 0.825690 | 4.085544e-54 | -8.615850e-47 |
| Msa0748350 | Msa1385480 | 0.837366 | 5.422297e-57 | -8.615850e-47 |
| Msa0748350 | Msa1390760 | 0.809521 | 1.816113e-50 | -8.615850e-47 |
| Msa0748350 | Msa1415620 | 0.822847 | 1.902472e-53 | -8.615850e-47 |
| Msa0748350 | Msa1424570 | 0.816733 | 4.750197e-52 | -8.615850e-47 |
| Msa0748350 | Msa1425070 | 0.850098 | 2.114656e-60 | -8.615850e-47 |
| Msa0748350 | Msa1432310 | 0.821849 | 3.244986e-53 | -8.615850e-47 |
| Msa0748350 | Msa1446410 | 0.885284 | 9.287304e-72 | -8.615850e-47 |
| Msa0748350 | Msa1449160 | 0.842193 | 3.003501e-58 | -8.615850e-47 |
| Msa0748350 | Msa1450560 | 0.832650 | 8.376936e-56 | -8.615850e-47 |
| Msa0748350 | Msa1463570 | 0.828412 | 9.123004e-55 | -8.615850e-47 |
| Msa0748350 | Msa1465700 | 0.830500 | 2.836320e-55 | -8.615850e-47 |
| Msa0128330 | Msa0748350 | 0.823982 | 1.032918e-53 | -8.615850e-47 |
| Msa0132460 | Msa0748350 | 0.854263 | 1.382708e-61 | -8.615850e-47 |
| Msa0134580 | Msa0748350 | 0.896674 | 2.940084e-76 | -8.615850e-47 |
| Msa0146610 | Msa0748350 | 0.803571 | 3.271041e-49 | -8.615850e-47 |
| Msa0167860 | Msa0748350 | 0.864010 | 1.653319e-64 | -8.615850e-47 |
| Msa0174580 | Msa0748350 | 0.822249 | 2.620570e-53 | -8.615850e-47 |
| Msa0182050 | Msa0748350 | 0.854509 | 1.174183e-61 | -8.615850e-47 |
| Msa0182100 | Msa0748350 | 0.842744 | 2.144447e-58 | -8.615850e-47 |
| Msa0183840 | Msa0748350 | 0.805094 | 1.575760e-49 | -8.615850e-47 |
| Msa0188740 | Msa0748350 | 0.806838 | 6.771074e-50 | -8.615850e-47 |
| Msa0191450 | Msa0748350 | 0.832048 | 1.180760e-55 | -8.615850e-47 |
| Msa0191550 | Msa0748350 | 0.845764 | 3.312461e-59 | -8.615850e-47 |
| Msa0192050 | Msa0748350 | 0.820605 | 6.277979e-53 | -8.615850e-47 |
| Msa0192300 | Msa0748350 | 0.839409 | 1.612097e-57 | -8.615850e-47 |
| Msa0194940 | Msa0748350 | 0.865714 | 4.832361e-65 | -8.615850e-47 |
| Msa0195030 | Msa0748350 | 0.813029 | 3.148115e-51 | -8.615850e-47 |
| Msa0210330 | Msa0748350 | 0.811174 | 7.987047e-51 | -8.615850e-47 |
| Msa0222730 | Msa0748350 | 0.811599 | 6.458775e-51 | -8.615850e-47 |
| Msa0229150 | Msa0748350 | 0.825991 | 3.465747e-54 | -8.615850e-47 |
| Msa0235050 | Msa0748350 | 0.836140 | 1.114354e-56 | -8.615850e-47 |
| Msa0237180 | Msa0748350 | 0.811728 | 6.056357e-51 | -8.615850e-47 |
| Msa0371490 | Msa0748350 | 0.855574 | 5.757155e-62 | -8.615850e-47 |
| Msa0377370 | Msa0748350 | 0.836996 | 6.743527e-57 | -8.615850e-47 |
| Msa0377520 | Msa0748350 | 0.832564 | 8.796885e-56 | -8.615850e-47 |
| Msa0388250 | Msa0748350 | 0.802724 | 4.898377e-49 | -8.615850e-47 |
| Msa0419710 | Msa0748350 | 0.824674 | 7.104039e-54 | -8.615850e-47 |
| Msa0426090 | Msa0748350 | 0.834232 | 3.376942e-56 | -8.615850e-47 |
| Msa0426250 | Msa0748350 | 0.840958 | 6.352825e-58 | -8.615850e-47 |
| Msa0432750 | Msa0748350 | 0.816787 | 4.619183e-52 | -8.615850e-47 |
| Msa0438960 | Msa0748350 | 0.834054 | 3.740751e-56 | -8.615850e-47 |
| Msa0450150 | Msa0748350 | 0.843916 | 1.044176e-58 | -8.615850e-47 |
| Msa0472480 | Msa0748350 | 0.831180 | 1.931994e-55 | -8.615850e-47 |
| Msa0475810 | Msa0748350 | 0.826695 | 2.355788e-54 | -8.615850e-47 |
| Msa0479980 | Msa0748350 | 0.819142 | 1.356480e-52 | -8.615850e-47 |
| Msa0481520 | Msa0748350 | 0.874859 | 4.857140e-68 | -8.615850e-47 |
| Msa0264640 | Msa0748350 | 0.812229 | 4.709671e-51 | -8.615850e-47 |
| Msa0270160 | Msa0748350 | 0.800351 | 1.501303e-48 | -8.615850e-47 |
| Msa0277600 | Msa0748350 | 0.881357 | 2.568064e-70 | -8.615850e-47 |
| Msa0281330 | Msa0748350 | 0.858748 | 6.656893e-63 | -8.615850e-47 |
| Msa0281370 | Msa0748350 | 0.861163 | 1.244742e-63 | -8.615850e-47 |
| Msa0301220 | Msa0748350 | 0.821061 | 4.931282e-53 | -8.615850e-47 |
| Msa0301250 | Msa0748350 | 0.844298 | 8.242339e-59 | -8.615850e-47 |
| Msa0312210 | Msa0748350 | 0.832344 | 9.975737e-56 | -8.615850e-47 |
| Msa0313060 | Msa0748350 | 0.864150 | 1.495562e-64 | -8.615850e-47 |
| Msa0313520 | Msa0748350 | 0.845894 | 3.054357e-59 | -8.615850e-47 |
| Msa0315430 | Msa0748350 | 0.873852 | 1.066707e-67 | -8.615850e-47 |
| Msa0315660 | Msa0748350 | 0.817695 | 2.886024e-52 | -8.615850e-47 |
| Msa0340560 | Msa0748350 | 0.815251 | 1.017592e-51 | -8.615850e-47 |
| Msa0342860 | Msa0748350 | -0.840781 | 7.070952e-58 | -8.615850e-47 |
| Msa0511760 | Msa0748350 | 0.801763 | 7.723971e-49 | -8.615850e-47 |
| Msa0517480 | Msa0748350 | 0.847376 | 1.202281e-59 | -8.615850e-47 |
| Msa0529900 | Msa0748350 | 0.876415 | 1.422622e-68 | -8.615850e-47 |
| Msa0547920 | Msa0748350 | 0.867462 | 1.344227e-65 | -8.615850e-47 |
| Msa0550420 | Msa0748350 | 0.814437 | 1.541677e-51 | -8.615850e-47 |
| Msa0573550 | Msa0748350 | 0.895275 | 1.118839e-75 | -8.615850e-47 |
| Msa0582070 | Msa0748350 | 0.833208 | 6.086860e-56 | -8.615850e-47 |
| Msa0597240 | Msa0748350 | 0.809531 | 1.807088e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0748350 | MtrunA17_Chr7g0269621 | 100.000 | 219 | 0 | 0 | 1 | 219 | 1 | 219 | 2.60e-160 | 441 |
| Msa0748350 | MtrunA17_Chr1g0195141 | 98.925 | 186 | 2 | 0 | 1 | 186 | 1 | 186 | 4.82e-123 | 347 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0748350 | AT3G16780.1 | 82.791 | 215 | 31 | 3 | 1 | 215 | 1 | 209 | 7.20e-124 | 349 |
| Msa0748350 | AT1G02780.1 | 91.489 | 188 | 16 | 0 | 1 | 188 | 1 | 188 | 1.70e-116 | 331 |
| Msa0748350 | AT4G02230.1 | 91.489 | 188 | 16 | 0 | 1 | 188 | 1 | 188 | 2.57e-115 | 328 |
| Msa0748350 | AT4G16030.1 | 42.953 | 149 | 33 | 7 | 57 | 194 | 6 | 113 | 1.02e-17 | 76.3 |
Find 81 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCACGGCTGGCCTTGTTCT+TGG | 0.184984 | 5_2:-1509320 | None:intergenic |
| ATAATAGTCCCTGTTCTAAA+TGG | 0.256274 | 5_2:+1509828 | Msa0748350:three_prime_UTR |
| TAACCAGCTTCCTTATGTTT+TGG | 0.262188 | 5_2:-1508220 | None:intergenic |
| CTCTCTAGCCTTCTCAGCTT+TGG | 0.269286 | 5_2:-1509263 | None:intergenic |
| CATGTGCTTGTCAATCTTCT+TGG | 0.273354 | 5_2:-1509164 | None:intergenic |
| GAGATTTCGTTAACTTCATT+TGG | 0.301140 | 5_2:-1508091 | None:intergenic |
| GGCCTTGTTCTTGGCACGTT+TGG | 0.315875 | 5_2:-1509311 | None:intergenic |
| ATTATAATACTCACTGGGTC+TGG | 0.332335 | 5_2:-1509576 | None:intergenic |
| TGTGGGAAGCCTTGCCTCTC+TGG | 0.339458 | 5_2:-1509080 | None:intergenic |
| AGATTGCTTGGCTGAATTGT+TGG | 0.341299 | 5_2:+1509708 | Msa0748350:exon |
| GATTGCTTGGCTGAATTGTT+GGG | 0.356970 | 5_2:+1509709 | Msa0748350:three_prime_UTR |
| TTGTAAAATGTTTAGGGTCC+TGG | 0.366808 | 5_2:+1509496 | Msa0748350:intron |
| TTAAGGATGGGTTTATAATC+AGG | 0.382568 | 5_2:+1508240 | Msa0748350:CDS |
| AAAGGAAGACACTCTGGATA+TGG | 0.389292 | 5_2:+1508320 | Msa0748350:CDS |
| AGTGCGGTCGTGGCAAAGTT+TGG | 0.396257 | 5_2:+1508062 | Msa0748350:CDS |
| CGCTGCAGTCTGAGATTGCT+TGG | 0.398433 | 5_2:+1509696 | Msa0748350:exon |
| GTTGGCTTTGTTGCAGCAAC+AGG | 0.405850 | 5_2:-1509553 | None:intergenic |
| AGCAAAACACCATTTAGAAC+AGG | 0.406056 | 5_2:-1509837 | None:intergenic |
| TGACATGTACATGAAGGTTA+AGG | 0.407532 | 5_2:+1509192 | Msa0748350:CDS |
| TTTGAATGTGCATAGGTAAG+AGG | 0.427942 | 5_2:+1509050 | Msa0748350:intron |
| AAACATAAGGAAGCTGGTTA+AGG | 0.436979 | 5_2:+1508223 | Msa0748350:CDS |
| TGTCAATCTTCTTGGCCTCC+CGG | 0.437210 | 5_2:-1509156 | None:intergenic |
| GACGTTTGCTCCGCAAGTAC+CGG | 0.438844 | 5_2:+1509137 | Msa0748350:CDS |
| GACCTTGTCTGACCAGTTTG+AGG | 0.454488 | 5_2:+1509288 | Msa0748350:CDS |
| TCTGCTGGCTTCTCTCCTCC+AGG | 0.456457 | 5_2:-1509514 | None:intergenic |
| AGCGTTCTCAAGTGCGGTCG+TGG | 0.462752 | 5_2:+1508052 | Msa0748350:CDS |
| ACGAGACCTGGAGTGAATCT+TGG | 0.472398 | 5_2:-1508270 | None:intergenic |
| TAAGAATAAGAGAGTTCTGA+TGG | 0.474240 | 5_2:+1509225 | Msa0748350:CDS |
| TGGCACGTTTGGCCTCAAAC+TGG | 0.475046 | 5_2:-1509300 | None:intergenic |
| AGCATGCTTCCTCTCACGGC+TGG | 0.480022 | 5_2:-1509332 | None:intergenic |
| TTATAATACTCACTGGGTCT+GGG | 0.483209 | 5_2:-1509575 | None:intergenic |
| AATAAATCGAGTTGGGGCTA+TGG | 0.487660 | 5_2:-1509952 | None:intergenic |
| GACATGTACATGAAGGTTAA+GGG | 0.489265 | 5_2:+1509193 | Msa0748350:CDS |
| GACTGTGTGAGCAGCAGCTA+AGG | 0.489602 | 5_2:-1507975 | None:intergenic |
| TCCTAGCATGCTTCCTCTCA+CGG | 0.495294 | 5_2:-1509336 | None:intergenic |
| AATACTCACTGGGTCTGGGT+TGG | 0.502471 | 5_2:-1509571 | None:intergenic |
| AAGAGGAAAGGAAGACACTC+TGG | 0.516416 | 5_2:+1508314 | Msa0748350:CDS |
| TCTTGGCCTCCCGGTACTTG+CGG | 0.524961 | 5_2:-1509147 | None:intergenic |
| GCAGCACTAGGAGCTTCTGC+TGG | 0.526670 | 5_2:-1509529 | None:intergenic |
| ACGTTTGCTCCGCAAGTACC+GGG | 0.538079 | 5_2:+1509138 | Msa0748350:CDS |
| CATTCTACGAGCACGAGACC+TGG | 0.539613 | 5_2:-1508282 | None:intergenic |
| ATAAGGAAGCTGGTTAAGGA+TGG | 0.542795 | 5_2:+1508227 | Msa0748350:CDS |
| CACGCATTCTTCTCATCCAA+AGG | 0.547413 | 5_2:-1509108 | None:intergenic |
| GCCGTGAGAGGAAGCATGCT+AGG | 0.550143 | 5_2:+1509335 | Msa0748350:CDS |
| TCACAAGTCCAAAGCTGAGA+AGG | 0.552682 | 5_2:+1509255 | Msa0748350:CDS |
| GTCTCGTGCTCGTAGAATGA+AGG | 0.553438 | 5_2:+1508286 | Msa0748350:CDS |
| ATGAAGGAAGCTAAGAGGAA+AGG | 0.554411 | 5_2:+1508302 | Msa0748350:CDS |
| AATGTGCATAGGTAAGAGGA+AGG | 0.560538 | 5_2:+1509054 | Msa0748350:intron |
| TAAGGAAGCTGGTTAAGGAT+GGG | 0.561785 | 5_2:+1508228 | Msa0748350:CDS |
| GTAGAATGAAGGAAGCTAAG+AGG | 0.564014 | 5_2:+1508297 | Msa0748350:CDS |
| GCAGCAACAGGTGCAGCACT+AGG | 0.565218 | 5_2:-1509541 | None:intergenic |
| ACCGCAAAAGAAATCAAAGA+AGG | 0.568261 | 5_2:+1509672 | Msa0748350:CDS |
| TGAGAGGAAGCATGCTAGGA+GGG | 0.573502 | 5_2:+1509339 | Msa0748350:CDS |
| AGAACAAGGCCAGCCGTGAG+AGG | 0.576244 | 5_2:+1509323 | Msa0748350:CDS |
| AGGCCAAAACATAAGGAAGC+TGG | 0.578002 | 5_2:+1508217 | Msa0748350:intron |
| ACTTGAGAACGCTGGAAGCG+AGG | 0.578193 | 5_2:-1508042 | None:intergenic |
| TTGCAATTTGAGGGAGACCA+TGG | 0.583099 | 5_2:-1508014 | None:intergenic |
| TGAGCAGCAGCTAAGGCAAA+TGG | 0.590673 | 5_2:-1507968 | None:intergenic |
| GGCCAAACGTGCCAAGAACA+AGG | 0.590924 | 5_2:+1509309 | Msa0748350:CDS |
| GGCCTCAAACTGGTCAGACA+AGG | 0.594906 | 5_2:-1509290 | None:intergenic |
| TAACCTTCATGTACATGTCA+TGG | 0.601477 | 5_2:-1509189 | None:intergenic |
| AAAATAAATAAATCGAGTTG+GGG | 0.602135 | 5_2:-1509958 | None:intergenic |
| GACCTGGAGTGAATCTTGGT+GGG | 0.604962 | 5_2:-1508266 | None:intergenic |
| CTACTTTAGAACAGCAACTG+AGG | 0.612176 | 5_2:-1509739 | None:intergenic |
| AACCCACCAAGATTCACTCC+AGG | 0.614800 | 5_2:+1508264 | Msa0748350:CDS |
| TGAAGTTAACGAAATCTCCA+TGG | 0.615795 | 5_2:+1508096 | Msa0748350:CDS |
| AGACCTGGAGTGAATCTTGG+TGG | 0.619616 | 5_2:-1508267 | None:intergenic |
| ACGACCGCACTTGAGAACGC+TGG | 0.620586 | 5_2:-1508050 | None:intergenic |
| GTGAGAGGAAGCATGCTAGG+AGG | 0.624464 | 5_2:+1509338 | Msa0748350:CDS |
| GCTTCCAGCGTTCTCAAGTG+CGG | 0.631493 | 5_2:+1508046 | Msa0748350:CDS |
| TAAAATGTTTAGGGTCCTGG+AGG | 0.638656 | 5_2:+1509499 | Msa0748350:intron |
| CAAGCAATCTCAGACTGCAG+CGG | 0.641887 | 5_2:-1509695 | None:intergenic |
| TAGCTTACGAGAATTAGCCA+TGG | 0.650085 | 5_2:-1508113 | None:intergenic |
| GTACCATGACATGTACATGA+AGG | 0.655137 | 5_2:+1509186 | Msa0748350:CDS |
| GAGGAAGCATGCTAGGAGGG+AGG | 0.658603 | 5_2:+1509342 | Msa0748350:CDS |
| GGAAGGGTACCAGAGAGGCA+AGG | 0.658732 | 5_2:+1509071 | Msa0748350:CDS |
| CAGAAACAAGCAATCAACCA+TGG | 0.677132 | 5_2:+1507997 | Msa0748350:exon |
| TAAGAGGAAGGGTACCAGAG+AGG | 0.678708 | 5_2:+1509066 | Msa0748350:CDS |
| GCAAAACACCATTTAGAACA+GGG | 0.681819 | 5_2:-1509836 | None:intergenic |
| ATGTGCATAGGTAAGAGGAA+GGG | 0.705490 | 5_2:+1509055 | Msa0748350:intron |
| TTTGCTCCGCAAGTACCGGG+AGG | 0.725507 | 5_2:+1509141 | Msa0748350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTATAAACAAACAAAA+TGG | - | chr5_2:1508487-1508506 | None:intergenic | 10.0% |
| !!! | ATTCTTTTTGAAATTATTAA+TGG | + | chr5_2:1509457-1509476 | Msa0748350:intron | 10.0% |
| !! | ATAATTATAAACAAACAAAA+TGG | - | chr5_2:1508487-1508506 | None:intergenic | 10.0% |
| !!! | ATTCTTTTTGAAATTATTAA+TGG | + | chr5_2:1509457-1509476 | Msa0748350:intron | 10.0% |
| !! | ATCTATTCTTATTATGATTT+AGG | + | chr5_2:1508384-1508403 | Msa0748350:intron | 15.0% |
| !! | ATATATTTCAGTTTACAAAA+TGG | + | chr5_2:1508795-1508814 | Msa0748350:intron | 15.0% |
| !! | TAATAATTGTTTGAAAACTA+TGG | + | chr5_2:1508830-1508849 | Msa0748350:intron | 15.0% |
| !!! | TTTTCTTTGTAAAATGTTTA+GGG | + | chr5_2:1509490-1509509 | Msa0748350:intron | 15.0% |
| !! | AATAAATTATAATACTCACT+GGG | - | chr5_2:1509584-1509603 | None:intergenic | 15.0% |
| !!! | ATGTTTTTATACTTTTCTAA+TGG | + | chr5_2:1509911-1509930 | Msa0748350:three_prime_UTR | 15.0% |
| !! | AAAAATAAATAAATCGAGTT+GGG | - | chr5_2:1509962-1509981 | None:intergenic | 15.0% |
| !! | ATCTATTCTTATTATGATTT+AGG | + | chr5_2:1508384-1508403 | Msa0748350:intron | 15.0% |
| !! | ATATATTTCAGTTTACAAAA+TGG | + | chr5_2:1508795-1508814 | Msa0748350:intron | 15.0% |
| !! | TAATAATTGTTTGAAAACTA+TGG | + | chr5_2:1508830-1508849 | Msa0748350:intron | 15.0% |
| !!! | TTTTCTTTGTAAAATGTTTA+GGG | + | chr5_2:1509490-1509509 | Msa0748350:intron | 15.0% |
| !! | AATAAATTATAATACTCACT+GGG | - | chr5_2:1509584-1509603 | None:intergenic | 15.0% |
| !!! | ATGTTTTTATACTTTTCTAA+TGG | + | chr5_2:1509911-1509930 | Msa0748350:three_prime_UTR | 15.0% |
| !! | AAAAATAAATAAATCGAGTT+GGG | - | chr5_2:1509962-1509981 | None:intergenic | 15.0% |
| !!! | AAAGTTGATTTTGATTTTGT+AGG | + | chr5_2:1508197-1508216 | Msa0748350:intron | 20.0% |
| !!! | TGAAATATATTTTGTTGTGA+CGG | - | chr5_2:1508785-1508804 | None:intergenic | 20.0% |
| !!! | TCATATTTTACAAAACAACA+TGG | - | chr5_2:1508941-1508960 | None:intergenic | 20.0% |
| !! | AAAGAATTTCAAGAAATCAT+AGG | - | chr5_2:1509391-1509410 | None:intergenic | 20.0% |
| !!! | CTAAACATTTTACAAAGAAA+AGG | - | chr5_2:1509491-1509510 | None:intergenic | 20.0% |
| !!! | CTTTTCTTTGTAAAATGTTT+AGG | + | chr5_2:1509489-1509508 | Msa0748350:intron | 20.0% |
| !! | GAATAAATTATAATACTCAC+TGG | - | chr5_2:1509585-1509604 | None:intergenic | 20.0% |
| !!! | TGTTTAATTTTTCAGTTATC+AGG | + | chr5_2:1509794-1509813 | Msa0748350:three_prime_UTR | 20.0% |
| !!! | TTTTTGTTATGATTTTGTTG+CGG | + | chr5_2:1509861-1509880 | Msa0748350:three_prime_UTR | 20.0% |
| !!! | AAAATAAATAAATCGAGTTG+GGG | - | chr5_2:1509961-1509980 | None:intergenic | 20.0% |
| !!! | AAAGTTGATTTTGATTTTGT+AGG | + | chr5_2:1508197-1508216 | Msa0748350:intron | 20.0% |
| !!! | TGAAATATATTTTGTTGTGA+CGG | - | chr5_2:1508785-1508804 | None:intergenic | 20.0% |
| !!! | TCATATTTTACAAAACAACA+TGG | - | chr5_2:1508941-1508960 | None:intergenic | 20.0% |
| !! | AAAGAATTTCAAGAAATCAT+AGG | - | chr5_2:1509391-1509410 | None:intergenic | 20.0% |
| !!! | CTAAACATTTTACAAAGAAA+AGG | - | chr5_2:1509491-1509510 | None:intergenic | 20.0% |
| !!! | CTTTTCTTTGTAAAATGTTT+AGG | + | chr5_2:1509489-1509508 | Msa0748350:intron | 20.0% |
| !! | GAATAAATTATAATACTCAC+TGG | - | chr5_2:1509585-1509604 | None:intergenic | 20.0% |
| !!! | TGTTTAATTTTTCAGTTATC+AGG | + | chr5_2:1509794-1509813 | Msa0748350:three_prime_UTR | 20.0% |
| !!! | TTTTTGTTATGATTTTGTTG+CGG | + | chr5_2:1509861-1509880 | Msa0748350:three_prime_UTR | 20.0% |
| !!! | AAAATAAATAAATCGAGTTG+GGG | - | chr5_2:1509961-1509980 | None:intergenic | 20.0% |
| !! | ATTTAAAATGAAGCTAATCG+AGG | - | chr5_2:1508366-1508385 | None:intergenic | 25.0% |
| ! | GAAATACGAGTTTACATTTA+TGG | + | chr5_2:1508961-1508980 | Msa0748350:intron | 25.0% |
| ! | ACATAGATGTATATGATTTG+AGG | + | chr5_2:1509415-1509434 | Msa0748350:intron | 25.0% |
| !! | ATTTAAAATGAAGCTAATCG+AGG | - | chr5_2:1508366-1508385 | None:intergenic | 25.0% |
| ! | GAAATACGAGTTTACATTTA+TGG | + | chr5_2:1508961-1508980 | Msa0748350:intron | 25.0% |
| ! | ACATAGATGTATATGATTTG+AGG | + | chr5_2:1509415-1509434 | Msa0748350:intron | 25.0% |
| GAGATTTCGTTAACTTCATT+TGG | - | chr5_2:1508094-1508113 | None:intergenic | 30.0% | |
| ! | ATTTTGTAGGCCAAAACATA+AGG | + | chr5_2:1508210-1508229 | Msa0748350:intron | 30.0% |
| ! | TTAAGGATGGGTTTATAATC+AGG | + | chr5_2:1508240-1508259 | Msa0748350:CDS | 30.0% |
| ! | AACTAATCAATCTAAGACAG+TGG | - | chr5_2:1508707-1508726 | None:intergenic | 30.0% |
| !! | GTTAACATTTTGGTGTGAAA+AGG | - | chr5_2:1508754-1508773 | None:intergenic | 30.0% |
| ! | GGAGTGAAAAGTTAACATTT+TGG | - | chr5_2:1508764-1508783 | None:intergenic | 30.0% |
| AAAAACTGTCAACAATTCCA+AGG | - | chr5_2:1508856-1508875 | None:intergenic | 30.0% | |
| ! | TAAGAATAAGAGAGTTCTGA+TGG | + | chr5_2:1509225-1509244 | Msa0748350:CDS | 30.0% |
| TTAAACAATCATGCATAGCA+GGG | - | chr5_2:1509633-1509652 | None:intergenic | 30.0% | |
| TTTAAACAATCATGCATAGC+AGG | - | chr5_2:1509634-1509653 | None:intergenic | 30.0% | |
| ! | ATAATAGTCCCTGTTCTAAA+TGG | + | chr5_2:1509828-1509847 | Msa0748350:three_prime_UTR | 30.0% |
| GAGATTTCGTTAACTTCATT+TGG | - | chr5_2:1508094-1508113 | None:intergenic | 30.0% | |
| ! | ATTTTGTAGGCCAAAACATA+AGG | + | chr5_2:1508210-1508229 | Msa0748350:intron | 30.0% |
| ! | TTAAGGATGGGTTTATAATC+AGG | + | chr5_2:1508240-1508259 | Msa0748350:CDS | 30.0% |
| ! | AACTAATCAATCTAAGACAG+TGG | - | chr5_2:1508707-1508726 | None:intergenic | 30.0% |
| !! | GTTAACATTTTGGTGTGAAA+AGG | - | chr5_2:1508754-1508773 | None:intergenic | 30.0% |
| ! | GGAGTGAAAAGTTAACATTT+TGG | - | chr5_2:1508764-1508783 | None:intergenic | 30.0% |
| AAAAACTGTCAACAATTCCA+AGG | - | chr5_2:1508856-1508875 | None:intergenic | 30.0% | |
| ! | TAAGAATAAGAGAGTTCTGA+TGG | + | chr5_2:1509225-1509244 | Msa0748350:CDS | 30.0% |
| TTAAACAATCATGCATAGCA+GGG | - | chr5_2:1509633-1509652 | None:intergenic | 30.0% | |
| TTTAAACAATCATGCATAGC+AGG | - | chr5_2:1509634-1509653 | None:intergenic | 30.0% | |
| ! | ATAATAGTCCCTGTTCTAAA+TGG | + | chr5_2:1509828-1509847 | Msa0748350:three_prime_UTR | 30.0% |
| TGAAGTTAACGAAATCTCCA+TGG | + | chr5_2:1508096-1508115 | Msa0748350:CDS | 35.0% | |
| ! | TAACCAGCTTCCTTATGTTT+TGG | - | chr5_2:1508223-1508242 | None:intergenic | 35.0% |
| AAACATAAGGAAGCTGGTTA+AGG | + | chr5_2:1508223-1508242 | Msa0748350:CDS | 35.0% | |
| AATGAAGCTAATCGAGGTTA+GGG | - | chr5_2:1508360-1508379 | None:intergenic | 35.0% | |
| AAATGAAGCTAATCGAGGTT+AGG | - | chr5_2:1508361-1508380 | None:intergenic | 35.0% | |
| TTGTTTGAAAACTATGGCCT+TGG | + | chr5_2:1508836-1508855 | Msa0748350:intron | 35.0% | |
| TTACTGAGTTGCTCATCAAT+TGG | + | chr5_2:1508907-1508926 | Msa0748350:intron | 35.0% | |
| ACGAGTTTACATTTATGGAC+TGG | + | chr5_2:1508966-1508985 | Msa0748350:intron | 35.0% | |
| GTGTTTGTTTGAATGTGCAT+AGG | + | chr5_2:1509043-1509062 | Msa0748350:intron | 35.0% | |
| TTTGAATGTGCATAGGTAAG+AGG | + | chr5_2:1509050-1509069 | Msa0748350:intron | 35.0% | |
| ! | CTCATCCAAAGGATTTTTGT+GGG | - | chr5_2:1509100-1509119 | None:intergenic | 35.0% |
| ! | TCTCATCCAAAGGATTTTTG+TGG | - | chr5_2:1509101-1509120 | None:intergenic | 35.0% |
| TAACCTTCATGTACATGTCA+TGG | - | chr5_2:1509192-1509211 | None:intergenic | 35.0% | |
| TGACATGTACATGAAGGTTA+AGG | + | chr5_2:1509192-1509211 | Msa0748350:CDS | 35.0% | |
| GACATGTACATGAAGGTTAA+GGG | + | chr5_2:1509193-1509212 | Msa0748350:CDS | 35.0% | |
| ! | TTGTAAAATGTTTAGGGTCC+TGG | + | chr5_2:1509496-1509515 | Msa0748350:intron | 35.0% |
| TTATAATACTCACTGGGTCT+GGG | - | chr5_2:1509578-1509597 | None:intergenic | 35.0% | |
| ATTATAATACTCACTGGGTC+TGG | - | chr5_2:1509579-1509598 | None:intergenic | 35.0% | |
| ACCGCAAAAGAAATCAAAGA+AGG | + | chr5_2:1509672-1509691 | Msa0748350:CDS | 35.0% | |
| !! | GCCTTCTTTGATTTCTTTTG+CGG | - | chr5_2:1509676-1509695 | None:intergenic | 35.0% |
| !! | GTTTTGACGAGTCTTTTTGT+TGG | + | chr5_2:1509761-1509780 | Msa0748350:three_prime_UTR | 35.0% |
| ! | GCAAAACACCATTTAGAACA+GGG | - | chr5_2:1509839-1509858 | None:intergenic | 35.0% |
| ! | AGCAAAACACCATTTAGAAC+AGG | - | chr5_2:1509840-1509859 | None:intergenic | 35.0% |
| ! | ATTTTGTTGCGGAAACACTT+TGG | + | chr5_2:1509872-1509891 | Msa0748350:three_prime_UTR | 35.0% |
| TGAAGTTAACGAAATCTCCA+TGG | + | chr5_2:1508096-1508115 | Msa0748350:CDS | 35.0% | |
| ! | TAACCAGCTTCCTTATGTTT+TGG | - | chr5_2:1508223-1508242 | None:intergenic | 35.0% |
| AAACATAAGGAAGCTGGTTA+AGG | + | chr5_2:1508223-1508242 | Msa0748350:CDS | 35.0% | |
| AATGAAGCTAATCGAGGTTA+GGG | - | chr5_2:1508360-1508379 | None:intergenic | 35.0% | |
| AAATGAAGCTAATCGAGGTT+AGG | - | chr5_2:1508361-1508380 | None:intergenic | 35.0% | |
| TTGTTTGAAAACTATGGCCT+TGG | + | chr5_2:1508836-1508855 | Msa0748350:intron | 35.0% | |
| TTACTGAGTTGCTCATCAAT+TGG | + | chr5_2:1508907-1508926 | Msa0748350:intron | 35.0% | |
| ACGAGTTTACATTTATGGAC+TGG | + | chr5_2:1508966-1508985 | Msa0748350:intron | 35.0% | |
| GTGTTTGTTTGAATGTGCAT+AGG | + | chr5_2:1509043-1509062 | Msa0748350:intron | 35.0% | |
| TTTGAATGTGCATAGGTAAG+AGG | + | chr5_2:1509050-1509069 | Msa0748350:intron | 35.0% | |
| ! | CTCATCCAAAGGATTTTTGT+GGG | - | chr5_2:1509100-1509119 | None:intergenic | 35.0% |
| ! | TCTCATCCAAAGGATTTTTG+TGG | - | chr5_2:1509101-1509120 | None:intergenic | 35.0% |
| TAACCTTCATGTACATGTCA+TGG | - | chr5_2:1509192-1509211 | None:intergenic | 35.0% | |
| TGACATGTACATGAAGGTTA+AGG | + | chr5_2:1509192-1509211 | Msa0748350:CDS | 35.0% | |
| GACATGTACATGAAGGTTAA+GGG | + | chr5_2:1509193-1509212 | Msa0748350:CDS | 35.0% | |
| ! | TTGTAAAATGTTTAGGGTCC+TGG | + | chr5_2:1509496-1509515 | Msa0748350:intron | 35.0% |
| TTATAATACTCACTGGGTCT+GGG | - | chr5_2:1509578-1509597 | None:intergenic | 35.0% | |
| ATTATAATACTCACTGGGTC+TGG | - | chr5_2:1509579-1509598 | None:intergenic | 35.0% | |
| ACCGCAAAAGAAATCAAAGA+AGG | + | chr5_2:1509672-1509691 | Msa0748350:CDS | 35.0% | |
| !! | GCCTTCTTTGATTTCTTTTG+CGG | - | chr5_2:1509676-1509695 | None:intergenic | 35.0% |
| !! | GTTTTGACGAGTCTTTTTGT+TGG | + | chr5_2:1509761-1509780 | Msa0748350:three_prime_UTR | 35.0% |
| ! | GCAAAACACCATTTAGAACA+GGG | - | chr5_2:1509839-1509858 | None:intergenic | 35.0% |
| ! | AGCAAAACACCATTTAGAAC+AGG | - | chr5_2:1509840-1509859 | None:intergenic | 35.0% |
| ! | ATTTTGTTGCGGAAACACTT+TGG | + | chr5_2:1509872-1509891 | Msa0748350:three_prime_UTR | 35.0% |
| CAGAAACAAGCAATCAACCA+TGG | + | chr5_2:1507997-1508016 | Msa0748350:exon | 40.0% | |
| TAGCTTACGAGAATTAGCCA+TGG | - | chr5_2:1508116-1508135 | None:intergenic | 40.0% | |
| ATAAGGAAGCTGGTTAAGGA+TGG | + | chr5_2:1508227-1508246 | Msa0748350:CDS | 40.0% | |
| TAAGGAAGCTGGTTAAGGAT+GGG | + | chr5_2:1508228-1508247 | Msa0748350:CDS | 40.0% | |
| GTAGAATGAAGGAAGCTAAG+AGG | + | chr5_2:1508297-1508316 | Msa0748350:CDS | 40.0% | |
| ATGAAGGAAGCTAAGAGGAA+AGG | + | chr5_2:1508302-1508321 | Msa0748350:CDS | 40.0% | |
| AAAGGAAGACACTCTGGATA+TGG | + | chr5_2:1508320-1508339 | Msa0748350:CDS | 40.0% | |
| ATGAAGCTAATCGAGGTTAG+GGG | - | chr5_2:1508359-1508378 | None:intergenic | 40.0% | |
| ATATCTCTAGATGACCAGAC+AGG | - | chr5_2:1509005-1509024 | None:intergenic | 40.0% | |
| AATGTGCATAGGTAAGAGGA+AGG | + | chr5_2:1509054-1509073 | Msa0748350:intron | 40.0% | |
| ATGTGCATAGGTAAGAGGAA+GGG | + | chr5_2:1509055-1509074 | Msa0748350:intron | 40.0% | |
| CATGTGCTTGTCAATCTTCT+TGG | - | chr5_2:1509167-1509186 | None:intergenic | 40.0% | |
| GTACCATGACATGTACATGA+AGG | + | chr5_2:1509186-1509205 | Msa0748350:CDS | 40.0% | |
| ! | TAAAATGTTTAGGGTCCTGG+AGG | + | chr5_2:1509499-1509518 | Msa0748350:intron | 40.0% |
| AGATTGCTTGGCTGAATTGT+TGG | + | chr5_2:1509708-1509727 | Msa0748350:exon | 40.0% | |
| GATTGCTTGGCTGAATTGTT+GGG | + | chr5_2:1509709-1509728 | Msa0748350:three_prime_UTR | 40.0% | |
| !! | CTACTTTAGAACAGCAACTG+AGG | - | chr5_2:1509742-1509761 | None:intergenic | 40.0% |
| !! | AATAAATCGAGTTGGGGCTA+TGG | - | chr5_2:1509955-1509974 | None:intergenic | 40.0% |
| CAGAAACAAGCAATCAACCA+TGG | + | chr5_2:1507997-1508016 | Msa0748350:exon | 40.0% | |
| TAGCTTACGAGAATTAGCCA+TGG | - | chr5_2:1508116-1508135 | None:intergenic | 40.0% | |
| ATAAGGAAGCTGGTTAAGGA+TGG | + | chr5_2:1508227-1508246 | Msa0748350:CDS | 40.0% | |
| TAAGGAAGCTGGTTAAGGAT+GGG | + | chr5_2:1508228-1508247 | Msa0748350:CDS | 40.0% | |
| GTAGAATGAAGGAAGCTAAG+AGG | + | chr5_2:1508297-1508316 | Msa0748350:CDS | 40.0% | |
| ATGAAGGAAGCTAAGAGGAA+AGG | + | chr5_2:1508302-1508321 | Msa0748350:CDS | 40.0% | |
| AAAGGAAGACACTCTGGATA+TGG | + | chr5_2:1508320-1508339 | Msa0748350:CDS | 40.0% | |
| ATGAAGCTAATCGAGGTTAG+GGG | - | chr5_2:1508359-1508378 | None:intergenic | 40.0% | |
| ATATCTCTAGATGACCAGAC+AGG | - | chr5_2:1509005-1509024 | None:intergenic | 40.0% | |
| AATGTGCATAGGTAAGAGGA+AGG | + | chr5_2:1509054-1509073 | Msa0748350:intron | 40.0% | |
| ATGTGCATAGGTAAGAGGAA+GGG | + | chr5_2:1509055-1509074 | Msa0748350:intron | 40.0% | |
| CATGTGCTTGTCAATCTTCT+TGG | - | chr5_2:1509167-1509186 | None:intergenic | 40.0% | |
| GTACCATGACATGTACATGA+AGG | + | chr5_2:1509186-1509205 | Msa0748350:CDS | 40.0% | |
| ! | TAAAATGTTTAGGGTCCTGG+AGG | + | chr5_2:1509499-1509518 | Msa0748350:intron | 40.0% |
| AGATTGCTTGGCTGAATTGT+TGG | + | chr5_2:1509708-1509727 | Msa0748350:exon | 40.0% | |
| GATTGCTTGGCTGAATTGTT+GGG | + | chr5_2:1509709-1509728 | Msa0748350:three_prime_UTR | 40.0% | |
| !! | CTACTTTAGAACAGCAACTG+AGG | - | chr5_2:1509742-1509761 | None:intergenic | 40.0% |
| !! | AATAAATCGAGTTGGGGCTA+TGG | - | chr5_2:1509955-1509974 | None:intergenic | 40.0% |
| TTGCAATTTGAGGGAGACCA+TGG | - | chr5_2:1508017-1508036 | None:intergenic | 45.0% | |
| !! | GAGGCGCTTTTGCAATTTGA+GGG | - | chr5_2:1508026-1508045 | None:intergenic | 45.0% |
| AGGCCAAAACATAAGGAAGC+TGG | + | chr5_2:1508217-1508236 | Msa0748350:intron | 45.0% | |
| AAGAGGAAAGGAAGACACTC+TGG | + | chr5_2:1508314-1508333 | Msa0748350:CDS | 45.0% | |
| GAAGACACTCTGGATATGGT+TGG | + | chr5_2:1508324-1508343 | Msa0748350:intron | 45.0% | |
| GGCTTCCCACAAAAATCCTT+TGG | + | chr5_2:1509092-1509111 | Msa0748350:CDS | 45.0% | |
| CACGCATTCTTCTCATCCAA+AGG | - | chr5_2:1509111-1509130 | None:intergenic | 45.0% | |
| TCACAAGTCCAAAGCTGAGA+AGG | + | chr5_2:1509255-1509274 | Msa0748350:CDS | 45.0% | |
| AACAATCATGCATAGCAGGG+CGG | - | chr5_2:1509630-1509649 | None:intergenic | 45.0% | |
| TTGCAATTTGAGGGAGACCA+TGG | - | chr5_2:1508017-1508036 | None:intergenic | 45.0% | |
| !! | GAGGCGCTTTTGCAATTTGA+GGG | - | chr5_2:1508026-1508045 | None:intergenic | 45.0% |
| AGGCCAAAACATAAGGAAGC+TGG | + | chr5_2:1508217-1508236 | Msa0748350:intron | 45.0% | |
| AAGAGGAAAGGAAGACACTC+TGG | + | chr5_2:1508314-1508333 | Msa0748350:CDS | 45.0% | |
| GAAGACACTCTGGATATGGT+TGG | + | chr5_2:1508324-1508343 | Msa0748350:intron | 45.0% | |
| GGCTTCCCACAAAAATCCTT+TGG | + | chr5_2:1509092-1509111 | Msa0748350:CDS | 45.0% | |
| CACGCATTCTTCTCATCCAA+AGG | - | chr5_2:1509111-1509130 | None:intergenic | 45.0% | |
| TCACAAGTCCAAAGCTGAGA+AGG | + | chr5_2:1509255-1509274 | Msa0748350:CDS | 45.0% | |
| AACAATCATGCATAGCAGGG+CGG | - | chr5_2:1509630-1509649 | None:intergenic | 45.0% | |
| !!! | AATAAATTTTATTTTAAGAT+CGG | - | chr5_2:1508535-1508554 | None:intergenic | 5.0% |
| !!! | AATAAATTTTATTTTAAGAT+CGG | - | chr5_2:1508535-1508554 | None:intergenic | 5.0% |
| !! | CGAGGCGCTTTTGCAATTTG+AGG | - | chr5_2:1508027-1508046 | None:intergenic | 50.0% |
| AACCCACCAAGATTCACTCC+AGG | + | chr5_2:1508264-1508283 | Msa0748350:CDS | 50.0% | |
| GACCTGGAGTGAATCTTGGT+GGG | - | chr5_2:1508269-1508288 | None:intergenic | 50.0% | |
| AGACCTGGAGTGAATCTTGG+TGG | - | chr5_2:1508270-1508289 | None:intergenic | 50.0% | |
| ACGAGACCTGGAGTGAATCT+TGG | - | chr5_2:1508273-1508292 | None:intergenic | 50.0% | |
| GTCTCGTGCTCGTAGAATGA+AGG | + | chr5_2:1508286-1508305 | Msa0748350:CDS | 50.0% | |
| GCTCAAAGCATGTTCCTGTC+TGG | + | chr5_2:1508988-1509007 | Msa0748350:intron | 50.0% | |
| !! | TAAGAGGAAGGGTACCAGAG+AGG | + | chr5_2:1509066-1509085 | Msa0748350:CDS | 50.0% |
| TGTCAATCTTCTTGGCCTCC+CGG | - | chr5_2:1509159-1509178 | None:intergenic | 50.0% | |
| ! | CTCTCTAGCCTTCTCAGCTT+TGG | - | chr5_2:1509266-1509285 | None:intergenic | 50.0% |
| GACCTTGTCTGACCAGTTTG+AGG | + | chr5_2:1509288-1509307 | Msa0748350:CDS | 50.0% | |
| TCCTAGCATGCTTCCTCTCA+CGG | - | chr5_2:1509339-1509358 | None:intergenic | 50.0% | |
| ! | TGAGAGGAAGCATGCTAGGA+GGG | + | chr5_2:1509339-1509358 | Msa0748350:CDS | 50.0% |
| !! | GTTGGCTTTGTTGCAGCAAC+AGG | - | chr5_2:1509556-1509575 | None:intergenic | 50.0% |
| AATACTCACTGGGTCTGGGT+TGG | - | chr5_2:1509574-1509593 | None:intergenic | 50.0% | |
| CAAGCAATCTCAGACTGCAG+CGG | - | chr5_2:1509698-1509717 | None:intergenic | 50.0% | |
| !! | CGAGGCGCTTTTGCAATTTG+AGG | - | chr5_2:1508027-1508046 | None:intergenic | 50.0% |
| AACCCACCAAGATTCACTCC+AGG | + | chr5_2:1508264-1508283 | Msa0748350:CDS | 50.0% | |
| GACCTGGAGTGAATCTTGGT+GGG | - | chr5_2:1508269-1508288 | None:intergenic | 50.0% | |
| AGACCTGGAGTGAATCTTGG+TGG | - | chr5_2:1508270-1508289 | None:intergenic | 50.0% | |
| ACGAGACCTGGAGTGAATCT+TGG | - | chr5_2:1508273-1508292 | None:intergenic | 50.0% | |
| GTCTCGTGCTCGTAGAATGA+AGG | + | chr5_2:1508286-1508305 | Msa0748350:CDS | 50.0% | |
| GCTCAAAGCATGTTCCTGTC+TGG | + | chr5_2:1508988-1509007 | Msa0748350:intron | 50.0% | |
| !! | TAAGAGGAAGGGTACCAGAG+AGG | + | chr5_2:1509066-1509085 | Msa0748350:CDS | 50.0% |
| TGTCAATCTTCTTGGCCTCC+CGG | - | chr5_2:1509159-1509178 | None:intergenic | 50.0% | |
| ! | CTCTCTAGCCTTCTCAGCTT+TGG | - | chr5_2:1509266-1509285 | None:intergenic | 50.0% |
| GACCTTGTCTGACCAGTTTG+AGG | + | chr5_2:1509288-1509307 | Msa0748350:CDS | 50.0% | |
| TCCTAGCATGCTTCCTCTCA+CGG | - | chr5_2:1509339-1509358 | None:intergenic | 50.0% | |
| ! | TGAGAGGAAGCATGCTAGGA+GGG | + | chr5_2:1509339-1509358 | Msa0748350:CDS | 50.0% |
| !! | GTTGGCTTTGTTGCAGCAAC+AGG | - | chr5_2:1509556-1509575 | None:intergenic | 50.0% |
| AATACTCACTGGGTCTGGGT+TGG | - | chr5_2:1509574-1509593 | None:intergenic | 50.0% | |
| CAAGCAATCTCAGACTGCAG+CGG | - | chr5_2:1509698-1509717 | None:intergenic | 50.0% | |
| GACTGTGTGAGCAGCAGCTA+AGG | - | chr5_2:1507978-1507997 | None:intergenic | 55.0% | |
| ACTTGAGAACGCTGGAAGCG+AGG | - | chr5_2:1508045-1508064 | None:intergenic | 55.0% | |
| GCTTCCAGCGTTCTCAAGTG+CGG | + | chr5_2:1508046-1508065 | Msa0748350:CDS | 55.0% | |
| AGTGCGGTCGTGGCAAAGTT+TGG | + | chr5_2:1508062-1508081 | Msa0748350:CDS | 55.0% | |
| CATTCTACGAGCACGAGACC+TGG | - | chr5_2:1508285-1508304 | None:intergenic | 55.0% | |
| GACGTTTGCTCCGCAAGTAC+CGG | + | chr5_2:1509137-1509156 | Msa0748350:CDS | 55.0% | |
| ACGTTTGCTCCGCAAGTACC+GGG | + | chr5_2:1509138-1509157 | Msa0748350:CDS | 55.0% | |
| GGCCTCAAACTGGTCAGACA+AGG | - | chr5_2:1509293-1509312 | None:intergenic | 55.0% | |
| TGGCACGTTTGGCCTCAAAC+TGG | - | chr5_2:1509303-1509322 | None:intergenic | 55.0% | |
| GGCCAAACGTGCCAAGAACA+AGG | + | chr5_2:1509309-1509328 | Msa0748350:CDS | 55.0% | |
| !! | GGCCTTGTTCTTGGCACGTT+TGG | - | chr5_2:1509314-1509333 | None:intergenic | 55.0% |
| ! | GTGAGAGGAAGCATGCTAGG+AGG | + | chr5_2:1509338-1509357 | Msa0748350:CDS | 55.0% |
| ATCATGCATAGCAGGGCGGA+AGG | - | chr5_2:1509626-1509645 | None:intergenic | 55.0% | |
| ! | CGCTGCAGTCTGAGATTGCT+TGG | + | chr5_2:1509696-1509715 | Msa0748350:exon | 55.0% |
| GACTGTGTGAGCAGCAGCTA+AGG | - | chr5_2:1507978-1507997 | None:intergenic | 55.0% | |
| ACTTGAGAACGCTGGAAGCG+AGG | - | chr5_2:1508045-1508064 | None:intergenic | 55.0% | |
| GCTTCCAGCGTTCTCAAGTG+CGG | + | chr5_2:1508046-1508065 | Msa0748350:CDS | 55.0% | |
| AGTGCGGTCGTGGCAAAGTT+TGG | + | chr5_2:1508062-1508081 | Msa0748350:CDS | 55.0% | |
| CATTCTACGAGCACGAGACC+TGG | - | chr5_2:1508285-1508304 | None:intergenic | 55.0% | |
| GACGTTTGCTCCGCAAGTAC+CGG | + | chr5_2:1509137-1509156 | Msa0748350:CDS | 55.0% | |
| ACGTTTGCTCCGCAAGTACC+GGG | + | chr5_2:1509138-1509157 | Msa0748350:CDS | 55.0% | |
| GGCCTCAAACTGGTCAGACA+AGG | - | chr5_2:1509293-1509312 | None:intergenic | 55.0% | |
| TGGCACGTTTGGCCTCAAAC+TGG | - | chr5_2:1509303-1509322 | None:intergenic | 55.0% | |
| GGCCAAACGTGCCAAGAACA+AGG | + | chr5_2:1509309-1509328 | Msa0748350:CDS | 55.0% | |
| !! | GGCCTTGTTCTTGGCACGTT+TGG | - | chr5_2:1509314-1509333 | None:intergenic | 55.0% |
| ! | GTGAGAGGAAGCATGCTAGG+AGG | + | chr5_2:1509338-1509357 | Msa0748350:CDS | 55.0% |
| ATCATGCATAGCAGGGCGGA+AGG | - | chr5_2:1509626-1509645 | None:intergenic | 55.0% | |
| ! | CGCTGCAGTCTGAGATTGCT+TGG | + | chr5_2:1509696-1509715 | Msa0748350:exon | 55.0% |
| ACGACCGCACTTGAGAACGC+TGG | - | chr5_2:1508053-1508072 | None:intergenic | 60.0% | |
| AGCGTTCTCAAGTGCGGTCG+TGG | + | chr5_2:1508052-1508071 | Msa0748350:CDS | 60.0% | |
| !! | GGAAGGGTACCAGAGAGGCA+AGG | + | chr5_2:1509071-1509090 | Msa0748350:CDS | 60.0% |
| TGTGGGAAGCCTTGCCTCTC+TGG | - | chr5_2:1509083-1509102 | None:intergenic | 60.0% | |
| !! | TTTGCTCCGCAAGTACCGGG+AGG | + | chr5_2:1509141-1509160 | Msa0748350:CDS | 60.0% |
| TCTTGGCCTCCCGGTACTTG+CGG | - | chr5_2:1509150-1509169 | None:intergenic | 60.0% | |
| !! | CTCACGGCTGGCCTTGTTCT+TGG | - | chr5_2:1509323-1509342 | None:intergenic | 60.0% |
| AGAACAAGGCCAGCCGTGAG+AGG | + | chr5_2:1509323-1509342 | Msa0748350:CDS | 60.0% | |
| AGCATGCTTCCTCTCACGGC+TGG | - | chr5_2:1509335-1509354 | None:intergenic | 60.0% | |
| ! | GCCGTGAGAGGAAGCATGCT+AGG | + | chr5_2:1509335-1509354 | Msa0748350:CDS | 60.0% |
| ! | GAGGAAGCATGCTAGGAGGG+AGG | + | chr5_2:1509342-1509361 | Msa0748350:CDS | 60.0% |
| !! | TCTGCTGGCTTCTCTCCTCC+AGG | - | chr5_2:1509517-1509536 | None:intergenic | 60.0% |
| GCAGCACTAGGAGCTTCTGC+TGG | - | chr5_2:1509532-1509551 | None:intergenic | 60.0% | |
| GCAGCAACAGGTGCAGCACT+AGG | - | chr5_2:1509544-1509563 | None:intergenic | 60.0% | |
| ACGACCGCACTTGAGAACGC+TGG | - | chr5_2:1508053-1508072 | None:intergenic | 60.0% | |
| AGCGTTCTCAAGTGCGGTCG+TGG | + | chr5_2:1508052-1508071 | Msa0748350:CDS | 60.0% | |
| !! | GGAAGGGTACCAGAGAGGCA+AGG | + | chr5_2:1509071-1509090 | Msa0748350:CDS | 60.0% |
| TGTGGGAAGCCTTGCCTCTC+TGG | - | chr5_2:1509083-1509102 | None:intergenic | 60.0% | |
| !! | TTTGCTCCGCAAGTACCGGG+AGG | + | chr5_2:1509141-1509160 | Msa0748350:CDS | 60.0% |
| TCTTGGCCTCCCGGTACTTG+CGG | - | chr5_2:1509150-1509169 | None:intergenic | 60.0% | |
| !! | CTCACGGCTGGCCTTGTTCT+TGG | - | chr5_2:1509323-1509342 | None:intergenic | 60.0% |
| AGAACAAGGCCAGCCGTGAG+AGG | + | chr5_2:1509323-1509342 | Msa0748350:CDS | 60.0% | |
| AGCATGCTTCCTCTCACGGC+TGG | - | chr5_2:1509335-1509354 | None:intergenic | 60.0% | |
| ! | GCCGTGAGAGGAAGCATGCT+AGG | + | chr5_2:1509335-1509354 | Msa0748350:CDS | 60.0% |
| ! | GAGGAAGCATGCTAGGAGGG+AGG | + | chr5_2:1509342-1509361 | Msa0748350:CDS | 60.0% |
| !! | TCTGCTGGCTTCTCTCCTCC+AGG | - | chr5_2:1509517-1509536 | None:intergenic | 60.0% |
| GCAGCACTAGGAGCTTCTGC+TGG | - | chr5_2:1509532-1509551 | None:intergenic | 60.0% | |
| GCAGCAACAGGTGCAGCACT+AGG | - | chr5_2:1509544-1509563 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 1507970 | 1509981 | 1507970 | ID=Msa0748350;Name=Msa0748350 |
| chr5_2 | mRNA | 1507970 | 1509981 | 1507970 | ID=Msa0748350-mRNA-1;Parent=Msa0748350;Name=Msa0748350-mRNA-1;_AED=0.09;_eAED=0.09;_QI=46|1|1|1|1|1|5|273|219 |
| chr5_2 | exon | 1507970 | 1508127 | 1507970 | ID=Msa0748350-mRNA-1:exon:435;Parent=Msa0748350-mRNA-1 |
| chr5_2 | exon | 1508219 | 1508341 | 1508219 | ID=Msa0748350-mRNA-1:exon:436;Parent=Msa0748350-mRNA-1 |
| chr5_2 | exon | 1509065 | 1509378 | 1509065 | ID=Msa0748350-mRNA-1:exon:437;Parent=Msa0748350-mRNA-1 |
| chr5_2 | exon | 1509511 | 1509584 | 1509511 | ID=Msa0748350-mRNA-1:exon:438;Parent=Msa0748350-mRNA-1 |
| chr5_2 | exon | 1509672 | 1509981 | 1509672 | ID=Msa0748350-mRNA-1:exon:439;Parent=Msa0748350-mRNA-1 |
| chr5_2 | five_prime_UTR | 1507970 | 1508015 | 1507970 | ID=Msa0748350-mRNA-1:five_prime_utr;Parent=Msa0748350-mRNA-1 |
| chr5_2 | CDS | 1508016 | 1508127 | 1508016 | ID=Msa0748350-mRNA-1:cds;Parent=Msa0748350-mRNA-1 |
| chr5_2 | CDS | 1508219 | 1508341 | 1508219 | ID=Msa0748350-mRNA-1:cds;Parent=Msa0748350-mRNA-1 |
| chr5_2 | CDS | 1509065 | 1509378 | 1509065 | ID=Msa0748350-mRNA-1:cds;Parent=Msa0748350-mRNA-1 |
| chr5_2 | CDS | 1509511 | 1509584 | 1509511 | ID=Msa0748350-mRNA-1:cds;Parent=Msa0748350-mRNA-1 |
| chr5_2 | CDS | 1509672 | 1509708 | 1509672 | ID=Msa0748350-mRNA-1:cds;Parent=Msa0748350-mRNA-1 |
| chr5_2 | three_prime_UTR | 1509709 | 1509981 | 1509709 | ID=Msa0748350-mRNA-1:three_prime_utr;Parent=Msa0748350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
