Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1333350 | XP_003609944.1 | 94.606 | 241 | 7 | 1 | 1 | 241 | 1 | 235 | 2.54e-165 | 466 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1333350 | sp|Q94HF1|EIF3K_ORYSJ | 78.475 | 223 | 47 | 1 | 19 | 241 | 5 | 226 | 1.44e-130 | 370 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1333350 | G7JS43 | 94.606 | 241 | 7 | 1 | 1 | 241 | 1 | 235 | 1.21e-165 | 466 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0694400 | Msa1333350 | 0.809707 | 1.656134e-50 | -8.615850e-47 |
| Msa0790450 | Msa1333350 | 0.823708 | 1.197895e-53 | -8.615850e-47 |
| Msa0188740 | Msa1333350 | 0.821185 | 4.618713e-53 | -8.615850e-47 |
| Msa0192300 | Msa1333350 | 0.812469 | 4.173103e-51 | -8.615850e-47 |
| Msa0237180 | Msa1333350 | 0.807168 | 5.765582e-50 | -8.615850e-47 |
| Msa1237040 | Msa1333350 | 0.818943 | 1.505774e-52 | -8.615850e-47 |
| Msa1266680 | Msa1333350 | 0.937936 | 1.535797e-98 | -8.615850e-47 |
| Msa1317390 | Msa1333350 | 0.801636 | 8.202398e-49 | -8.615850e-47 |
| Msa1333350 | Msa1385480 | 0.812541 | 4.025014e-51 | -8.615850e-47 |
| Msa1333350 | Msa1450560 | 0.824907 | 6.259871e-54 | -8.615850e-47 |
| Msa0270160 | Msa1333350 | 0.807234 | 5.584327e-50 | -8.615850e-47 |
| Msa0301250 | Msa1333350 | 0.812245 | 4.671083e-51 | -8.615850e-47 |
| Msa0313060 | Msa1333350 | 0.809154 | 2.176490e-50 | -8.615850e-47 |
| Msa0315660 | Msa1333350 | 0.806743 | 7.093881e-50 | -8.615850e-47 |
| Msa0929700 | Msa1333350 | 0.823621 | 1.255349e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1333350 | MtrunA17_Chr4g0069991 | 94.606 | 241 | 7 | 1 | 1 | 241 | 1 | 235 | 2.34e-169 | 466 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1333350 | AT4G33250.1 | 77.477 | 222 | 45 | 2 | 19 | 240 | 9 | 225 | 4.67e-128 | 362 |
Find 64 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGATCATTAAATTCATTTC+TGG | 0.142858 | 8_4:+53449369 | None:intergenic |
| CTGGAAGGTTTCGTCAGTTC+TGG | 0.234923 | 8_4:-53450579 | Msa1333350:CDS |
| TCGAGATCTGGAAGAATATC+TGG | 0.270145 | 8_4:+53452106 | None:intergenic |
| TGTTCTGTCTCACTATTTAG+AGG | 0.302059 | 8_4:-53450674 | Msa1333350:intron |
| ACCTCAGCAAGCACAGTTCT+AGG | 0.306787 | 8_4:+53449921 | None:intergenic |
| GCACAGTTCTAGGAATCTTT+TGG | 0.326432 | 8_4:+53449931 | None:intergenic |
| GATAGCGAACGCGAAGTACT+AGG | 0.371547 | 8_4:-53452278 | Msa1333350:five_prime_UTR |
| TGAAGAGAGAGTTTCGAAAT+GGG | 0.376778 | 8_4:-53452232 | Msa1333350:exon |
| GGATCATTAAATTCATTTCT+GGG | 0.389991 | 8_4:+53449370 | None:intergenic |
| CGTTGCTCGCATATTGGTTA+AGG | 0.392388 | 8_4:-53451799 | Msa1333350:intron |
| GAATAGGCTATCAATGTAGA+AGG | 0.397813 | 8_4:-53449484 | Msa1333350:intron |
| GTGAAGAGAGAGTTTCGAAA+TGG | 0.406395 | 8_4:-53452233 | Msa1333350:exon |
| AGTTGGCTACTTGGTGTTCA+AGG | 0.416300 | 8_4:+53449443 | None:intergenic |
| CCCAACCAGAGTTGGCTACT+TGG | 0.435040 | 8_4:+53449434 | None:intergenic |
| TGGAAGGTTTCGTCAGTTCT+GGG | 0.441956 | 8_4:-53450578 | Msa1333350:CDS |
| AAGAATCATACCACACGTTC+CGG | 0.441975 | 8_4:+53451053 | None:intergenic |
| ATAGAAAATCAGCTAAGAAT+AGG | 0.455595 | 8_4:+53449289 | None:intergenic |
| CGAAAATTATGTCAATGATC+AGG | 0.458244 | 8_4:-53452086 | Msa1333350:intron |
| CTCAAATTGAAGCATACAAT+GGG | 0.458273 | 8_4:+53449193 | None:intergenic |
| AAGAGACATAGGCTGAAGTC+TGG | 0.460902 | 8_4:+53451083 | None:intergenic |
| TCCTTGCTGTTGTACTTGTA+CGG | 0.463786 | 8_4:+53452189 | None:intergenic |
| ACAACAGCAAGGACAAGGAC+AGG | 0.464338 | 8_4:-53452179 | Msa1333350:CDS |
| CGATGAGTTGACCTGTCCCC+TGG | 0.466829 | 8_4:+53449398 | None:intergenic |
| CTCAATAACCCAACCAGAGT+TGG | 0.468021 | 8_4:+53449426 | None:intergenic |
| AATTATTGCAGGATTTGAGC+AGG | 0.473491 | 8_4:-53449994 | Msa1333350:intron |
| CTTCTCTTCTTCAGACTGGA+AGG | 0.475180 | 8_4:-53450594 | Msa1333350:intron |
| CATATAGTTGAAGCTGTGCC+AGG | 0.477852 | 8_4:-53450535 | Msa1333350:intron |
| CTGCCTTCTTCGCCTCTACC+AGG | 0.481697 | 8_4:-53451957 | Msa1333350:intron |
| TCAGATCGTTGCTCGCATAT+TGG | 0.484728 | 8_4:-53451805 | Msa1333350:CDS |
| CAATGTAGAAGGTTTATCCT+TGG | 0.488911 | 8_4:-53449473 | Msa1333350:CDS |
| CACTGCAGATAGTGTACCAT+TGG | 0.497181 | 8_4:-53449332 | Msa1333350:CDS |
| CATTAAATTCATTTCTGGGA+AGG | 0.506668 | 8_4:+53449374 | None:intergenic |
| GAACATGAATCGCATAGCCT+TGG | 0.508528 | 8_4:+53449967 | None:intergenic |
| CCAAGTAGCCAACTCTGGTT+GGG | 0.517284 | 8_4:-53449434 | Msa1333350:CDS |
| TTGGGTTATTGAGAAAAGCC+AGG | 0.525809 | 8_4:-53449416 | Msa1333350:CDS |
| GAAGGCAGAGATTTGATTCG+AGG | 0.526051 | 8_4:+53451972 | None:intergenic |
| ATAGCGAACGCGAAGTACTA+GGG | 0.534033 | 8_4:-53452277 | Msa1333350:five_prime_UTR |
| ACCAAGTAGCCAACTCTGGT+TGG | 0.542756 | 8_4:-53449435 | Msa1333350:CDS |
| TCTCAAATTGAAGCATACAA+TGG | 0.545357 | 8_4:+53449192 | None:intergenic |
| ATTGAGAAAAGCCAGGGGAC+AGG | 0.551924 | 8_4:-53449409 | Msa1333350:CDS |
| AATTGAAGCATACAATGGGA+TGG | 0.554475 | 8_4:+53449197 | None:intergenic |
| GGATTTGAGCAGGCAATCCA+AGG | 0.567214 | 8_4:-53449984 | Msa1333350:CDS |
| TACCATTGGAGCACATTAGA+CGG | 0.570341 | 8_4:-53449318 | Msa1333350:CDS |
| TGGAGCTGGCATAGCCATGA+GGG | 0.570416 | 8_4:+53451103 | None:intergenic |
| TCAATTTGAGAATTCATGAA+CGG | 0.571032 | 8_4:-53449180 | Msa1333350:three_prime_UTR |
| ATACCTGGTAGAGGCGAAGA+AGG | 0.571105 | 8_4:+53451954 | None:intergenic |
| GTGTTCAAGGAATTTGTCCA+AGG | 0.573518 | 8_4:+53449456 | None:intergenic |
| CATAGGCTGAAGTCTGGAGC+TGG | 0.575628 | 8_4:+53451089 | None:intergenic |
| GAACACCAAGTAGCCAACTC+TGG | 0.578457 | 8_4:-53449439 | Msa1333350:CDS |
| AGAAAATGGATACCTGGTAG+AGG | 0.583966 | 8_4:+53451945 | None:intergenic |
| TGGGTTATTGAGAAAAGCCA+GGG | 0.586311 | 8_4:-53449415 | Msa1333350:CDS |
| ATTGAAGCATACAATGGGAT+GGG | 0.587058 | 8_4:+53449198 | None:intergenic |
| ATCCGTCTAATGTGCTCCAA+TGG | 0.587256 | 8_4:+53449316 | None:intergenic |
| GAGCTGTTCGACAGTGTAAG+CGG | 0.592715 | 8_4:+53452150 | None:intergenic |
| TCCTAGAACTGTGCTTGCTG+AGG | 0.608721 | 8_4:-53449922 | Msa1333350:intron |
| CAACAGCAAGGACAAGGACA+GGG | 0.614854 | 8_4:-53452178 | Msa1333350:CDS |
| CAAGTACAACAGCAAGGACA+AGG | 0.618746 | 8_4:-53452184 | Msa1333350:CDS |
| TCGCTATCTTACCACTCACA+AGG | 0.620802 | 8_4:+53452293 | None:intergenic |
| CTGTGAATATTAGCAAATGG+AGG | 0.623742 | 8_4:-53450716 | Msa1333350:intron |
| CGCTATCTTACCACTCACAA+GGG | 0.651512 | 8_4:+53452294 | None:intergenic |
| CTGGAGCTGGCATAGCCATG+AGG | 0.661849 | 8_4:+53451102 | None:intergenic |
| CAGCAAGGACAAGGACAGGG+AGG | 0.673719 | 8_4:-53452175 | Msa1333350:CDS |
| GCCGTACAAGTACAACAGCA+AGG | 0.674180 | 8_4:-53452190 | Msa1333350:CDS |
| GGGTTATTGAGAAAAGCCAG+GGG | 0.752929 | 8_4:-53449414 | Msa1333350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACAATTTTAAAATGATTAAT+AGG | - | chr8_4:53449513-53449532 | Msa1333350:intron | 10.0% |
| !!! | ATTATTTTATCTACTAATAG+TGG | + | chr8_4:53449982-53450001 | None:intergenic | 15.0% |
| !!! | ATTTGGTTTTGTTTTTTAAT+AGG | - | chr8_4:53450276-53450295 | Msa1333350:intron | 15.0% |
| !! | ACAAAAATTAATGAACAAAA+GGG | + | chr8_4:53450663-53450682 | None:intergenic | 15.0% |
| !! | AACAAAAATTAATGAACAAA+AGG | + | chr8_4:53450664-53450683 | None:intergenic | 15.0% |
| !!! | TAAATGATTCTTGAAAATTT+TGG | - | chr8_4:53451691-53451710 | Msa1333350:intron | 15.0% |
| !!! | TTTTTTTGAACAAGAAATTT+TGG | - | chr8_4:53451731-53451750 | Msa1333350:intron | 15.0% |
| !! | CAAGTTTAACAAAAAATAAA+TGG | + | chr8_4:53451899-53451918 | None:intergenic | 15.0% |
| !!! | ATTTTTTGTTAAACTTGAAT+AGG | - | chr8_4:53451902-53451921 | Msa1333350:intron | 15.0% |
| !! | AATGACGATTAATAAGAAAA+TGG | + | chr8_4:53449474-53449493 | None:intergenic | 20.0% |
| !! | TTATGAAAATAAGCTGAAAA+CGG | + | chr8_4:53450069-53450088 | None:intergenic | 20.0% |
| !! | TACTATTACAATTGACTATT+AGG | + | chr8_4:53450481-53450500 | None:intergenic | 20.0% |
| !!! | GTAATAGTATGAATTTTACT+TGG | - | chr8_4:53450492-53450511 | Msa1333350:intron | 20.0% |
| !!! | TTACTTTAGAAAATTATTGC+AGG | - | chr8_4:53451397-53451416 | Msa1333350:intron | 20.0% |
| !! | ATTTAAATGGACAAAACAAA+AGG | + | chr8_4:53451510-53451529 | None:intergenic | 20.0% |
| ! | ATATGGATGATAAAGAAGAA+AGG | + | chr8_4:53449345-53449364 | None:intergenic | 25.0% |
| ! | ATCATCCATATCACTTAATT+AGG | - | chr8_4:53449354-53449373 | Msa1333350:CDS | 25.0% |
| ! | TCATCCATATCACTTAATTA+GGG | - | chr8_4:53449355-53449374 | Msa1333350:CDS | 25.0% |
| ! | TAAACCCTAATTAAGTGATA+TGG | + | chr8_4:53449362-53449381 | None:intergenic | 25.0% |
| !! | TCAATTCCAATTATTTCTTC+AGG | - | chr8_4:53449388-53449407 | Msa1333350:CDS | 25.0% |
| ! | ATGAAACCTGAAGAAATAAT+TGG | + | chr8_4:53449397-53449416 | None:intergenic | 25.0% |
| ! | TTAATAAGAAAATGGATACC+TGG | + | chr8_4:53449466-53449485 | None:intergenic | 25.0% |
| !!! | CACTATTTTAGTAAATGATG+CGG | + | chr8_4:53449821-53449840 | None:intergenic | 25.0% |
| ! | TTATCACTTGCTCAAATATT+TGG | - | chr8_4:53450259-53450278 | Msa1333350:intron | 25.0% |
| ! | TTAGATGTCTATAATTGAGA+AGG | - | chr8_4:53450454-53450473 | Msa1333350:intron | 25.0% |
| ! | TATATCGAGTAATGCTAAAT+AGG | + | chr8_4:53450629-53450648 | None:intergenic | 25.0% |
| ! | TTACTGTGAATATTAGCAAA+TGG | - | chr8_4:53450683-53450702 | Msa1333350:CDS | 25.0% |
| ! | ATTAAATCAGTATAATCACC+TGG | + | chr8_4:53450888-53450907 | None:intergenic | 25.0% |
| ! | AGACTTAGAAAAACTATTAG+AGG | - | chr8_4:53450980-53450999 | Msa1333350:intron | 25.0% |
| ! | TATTAGAGGATCTATTAAGA+AGG | - | chr8_4:53450994-53451013 | Msa1333350:intron | 25.0% |
| ! | CTTGTCATTGATATGTTATT+GGG | - | chr8_4:53451224-53451243 | Msa1333350:intron | 25.0% |
| !!! | ATTGATTTTTTGAAAACCTG+TGG | - | chr8_4:53451291-53451310 | Msa1333350:intron | 25.0% |
| !!! | TTGATTTTTTGAAAACCTGT+GGG | - | chr8_4:53451292-53451311 | Msa1333350:intron | 25.0% |
| !! | TGTTTTGTCCATTTAAATGT+TGG | - | chr8_4:53451512-53451531 | Msa1333350:intron | 25.0% |
| ! | TAAACGAACCAACATTTAAA+TGG | + | chr8_4:53451523-53451542 | None:intergenic | 25.0% |
| ! | TATTGTTTCGTTTATTCCTT+TGG | - | chr8_4:53451665-53451684 | Msa1333350:intron | 25.0% |
| ! | ATTGTTTCGTTTATTCCTTT+GGG | - | chr8_4:53451666-53451685 | Msa1333350:intron | 25.0% |
| !! | ATGATTCTTGAAAATTTTGG+CGG | - | chr8_4:53451694-53451713 | Msa1333350:intron | 25.0% |
| !! | TTTTGAACAAGAAATTTTGG+CGG | - | chr8_4:53451734-53451753 | Msa1333350:intron | 25.0% |
| ! | GAAATCAACTGATATCATAT+AGG | + | chr8_4:53451848-53451867 | None:intergenic | 25.0% |
| ! | GGATCATTAAATTCATTTCT+GGG | + | chr8_4:53452035-53452054 | None:intergenic | 25.0% |
| ! | TGGATCATTAAATTCATTTC+TGG | + | chr8_4:53452036-53452055 | None:intergenic | 25.0% |
| ! | ATAGAAAATCAGCTAAGAAT+AGG | + | chr8_4:53452116-53452135 | None:intergenic | 25.0% |
| !!! | TATTCTTAGCTGATTTTCTA+TGG | - | chr8_4:53452115-53452134 | Msa1333350:CDS | 25.0% |
| !!! | ATTCTTAGCTGATTTTCTAT+GGG | - | chr8_4:53452116-53452135 | Msa1333350:CDS | 25.0% |
| ! | TCAATTTGAGAATTCATGAA+CGG | - | chr8_4:53452222-53452241 | Msa1333350:exon | 25.0% |
| ! | ACATTAATGCAAAAAGTCAA+GGG | + | chr8_4:53452261-53452280 | None:intergenic | 25.0% |
| ! | AACATTAATGCAAAAAGTCA+AGG | + | chr8_4:53452262-53452281 | None:intergenic | 25.0% |
| !!! | AGTAACTTGCTTTTTGAAAT+AGG | + | chr8_4:53452304-53452323 | None:intergenic | 25.0% |
| !! | TTGACATAATTTTCGAGATC+TGG | + | chr8_4:53449311-53449330 | None:intergenic | 30.0% |
| CGAAAATTATGTCAATGATC+AGG | - | chr8_4:53449316-53449335 | Msa1333350:CDS | 30.0% | |
| AACCAAAAATCATATGCCAA+AGG | - | chr8_4:53449664-53449683 | Msa1333350:intron | 30.0% | |
| ACCAAAAATCATATGCCAAA+GGG | - | chr8_4:53449665-53449684 | Msa1333350:intron | 30.0% | |
| ! | AATACCTATATCTAAAGCTG+TGG | - | chr8_4:53449921-53449940 | Msa1333350:intron | 30.0% |
| !! | TACTAATAGTGGACAAATTG+GGG | + | chr8_4:53449971-53449990 | None:intergenic | 30.0% |
| !! | CTACTAATAGTGGACAAATT+GGG | + | chr8_4:53449972-53449991 | None:intergenic | 30.0% |
| !! | TCTACTAATAGTGGACAAAT+TGG | + | chr8_4:53449973-53449992 | None:intergenic | 30.0% |
| AGTGATAATATCAGCTATCT+TGG | + | chr8_4:53450247-53450266 | None:intergenic | 30.0% | |
| TGTTCTCATGCATAATTGAT+TGG | - | chr8_4:53450405-53450424 | Msa1333350:intron | 30.0% | |
| CTCAATTATAGACATCTAAC+AGG | + | chr8_4:53450453-53450472 | None:intergenic | 30.0% | |
| ! | TGGTTTTTGATAAATCACTG+TGG | - | chr8_4:53451047-53451066 | Msa1333350:intron | 30.0% |
| ATATGACAAGCATTTCAAGA+TGG | - | chr8_4:53451187-53451206 | Msa1333350:intron | 30.0% | |
| GCTTGTCATTGATATGTTAT+TGG | - | chr8_4:53451223-53451242 | Msa1333350:intron | 30.0% | |
| !!! | TGATTTTTTGAAAACCTGTG+GGG | - | chr8_4:53451293-53451312 | Msa1333350:intron | 30.0% |
| !! | TGGGGATTTTTGTTTATCTT+TGG | - | chr8_4:53451311-53451330 | Msa1333350:intron | 30.0% |
| !! | GTTTAGTATTGACTCTGATT+TGG | - | chr8_4:53451333-53451352 | Msa1333350:intron | 30.0% |
| !!! | AGTTTTGGAGAATTAATGCA+AGG | + | chr8_4:53451594-53451613 | None:intergenic | 30.0% |
| TCCAAAACTTAGTTTAACTC+CGG | - | chr8_4:53451605-53451624 | Msa1333350:intron | 30.0% | |
| TTGTTTCGTTTATTCCTTTG+GGG | - | chr8_4:53451667-53451686 | Msa1333350:intron | 30.0% | |
| ! | TTTCTCAAATACAAGAGTGT+TGG | - | chr8_4:53451782-53451801 | Msa1333350:intron | 30.0% |
| ! | CATTAAATTCATTTCTGGGA+AGG | + | chr8_4:53452031-53452050 | None:intergenic | 30.0% |
| ! | GCAGTGTTTTTCTTCAAAAT+TGG | + | chr8_4:53452056-53452075 | None:intergenic | 30.0% |
| !! | TTCTTAGCTGATTTTCTATG+GGG | - | chr8_4:53452117-53452136 | Msa1333350:CDS | 30.0% |
| ! | TCTCAAATTCGTACATTTTC+TGG | + | chr8_4:53452158-53452177 | None:intergenic | 30.0% |
| CTCAAATTGAAGCATACAAT+GGG | + | chr8_4:53452212-53452231 | None:intergenic | 30.0% | |
| TCTCAAATTGAAGCATACAA+TGG | + | chr8_4:53452213-53452232 | None:intergenic | 30.0% | |
| CATTAATGCAAAAAGTCAAG+GGG | + | chr8_4:53452260-53452279 | None:intergenic | 30.0% | |
| TGAAGAGAGAGTTTCGAAAT+GGG | - | chr8_4:53449170-53449189 | Msa1333350:three_prime_UTR | 35.0% | |
| ! | ATCTGAGAACTCATTTTCTC+AGG | + | chr8_4:53449583-53449602 | None:intergenic | 35.0% |
| ! | TCCCTTTGGCATATGATTTT+TGG | + | chr8_4:53449669-53449688 | None:intergenic | 35.0% |
| ! | TCATATGCCAAAGGGATTTT+TGG | - | chr8_4:53449673-53449692 | Msa1333350:intron | 35.0% |
| !! | ATTGCCACAGCTTTAGATAT+AGG | + | chr8_4:53449928-53449947 | None:intergenic | 35.0% |
| ! | ATATCTAAAGCTGTGGCAAT+AGG | - | chr8_4:53449928-53449947 | Msa1333350:CDS | 35.0% |
| !! | GCTGTTTTCATAAGCTATCT+CGG | + | chr8_4:53450097-53450116 | None:intergenic | 35.0% |
| GCTTATCATGATAAGCACTT+TGG | - | chr8_4:53450185-53450204 | Msa1333350:intron | 35.0% | |
| !!! | TGTTTTTTAATAGGCCCTCA+TGG | - | chr8_4:53450285-53450304 | Msa1333350:intron | 35.0% |
| !! | CCTATGTCTCTTTTTGATTC+CGG | - | chr8_4:53450330-53450349 | Msa1333350:intron | 35.0% |
| TTATAGACATCTAACAGGAG+TGG | + | chr8_4:53450448-53450467 | None:intergenic | 35.0% | |
| ! | GTCAATCTTTTGTGTTACAC+AGG | - | chr8_4:53450514-53450533 | Msa1333350:intron | 35.0% |
| TCGAGTAATGCTAAATAGGA+AGG | + | chr8_4:53450625-53450644 | None:intergenic | 35.0% | |
| CTGTGAATATTAGCAAATGG+AGG | - | chr8_4:53450686-53450705 | Msa1333350:CDS | 35.0% | |
| TGTTCTGTCTCACTATTTAG+AGG | - | chr8_4:53450728-53450747 | Msa1333350:intron | 35.0% | |
| TATTCTTCTCTTCTTCAGAC+TGG | - | chr8_4:53450804-53450823 | Msa1333350:intron | 35.0% | |
| GTTTCTCTTATAGTTTCTCC+AGG | - | chr8_4:53450928-53450947 | Msa1333350:intron | 35.0% | |
| ! | TGATGAGTTGGAAAAAGACA+TGG | - | chr8_4:53451027-53451046 | Msa1333350:intron | 35.0% |
| ATCAGATATTTGTAACCGCA+AGG | + | chr8_4:53451167-53451186 | None:intergenic | 35.0% | |
| AGATAAACAAAAATCCCCAC+AGG | + | chr8_4:53451310-53451329 | None:intergenic | 35.0% | |
| !! | TTGACTCTGATTTGGCTTAT+AGG | - | chr8_4:53451341-53451360 | Msa1333350:intron | 35.0% |
| AATTATTGCAGGATTTGAGC+AGG | - | chr8_4:53451408-53451427 | Msa1333350:intron | 35.0% | |
| ! | AGGAATCTTTTGGTAAGTCA+AGG | + | chr8_4:53451464-53451483 | None:intergenic | 35.0% |
| ! | ACCGGAGTTAAACTAAGTTT+TGG | + | chr8_4:53451609-53451628 | None:intergenic | 35.0% |
| TATGCGTTCATTCATCAAAC+CGG | + | chr8_4:53451627-53451646 | None:intergenic | 35.0% | |
| CAAGAATCATTTAACCCCAA+AGG | + | chr8_4:53451684-53451703 | None:intergenic | 35.0% | |
| GAATAGGCTATCAATGTAGA+AGG | - | chr8_4:53451918-53451937 | Msa1333350:intron | 35.0% | |
| CAATGTAGAAGGTTTATCCT+TGG | - | chr8_4:53451929-53451948 | Msa1333350:intron | 35.0% | |
| !! | TCTTAGCTGATTTTCTATGG+GGG | - | chr8_4:53452118-53452137 | Msa1333350:CDS | 35.0% |
| ATTGAAGCATACAATGGGAT+GGG | + | chr8_4:53452207-53452226 | None:intergenic | 35.0% | |
| AATTGAAGCATACAATGGGA+TGG | + | chr8_4:53452208-53452227 | None:intergenic | 35.0% | |
| GTGAAGAGAGAGTTTCGAAA+TGG | - | chr8_4:53449169-53449188 | Msa1333350:three_prime_UTR | 40.0% | |
| !! | TCCTTGCTGTTGTACTTGTA+CGG | + | chr8_4:53449216-53449235 | None:intergenic | 40.0% |
| TCGAGATCTGGAAGAATATC+TGG | + | chr8_4:53449299-53449318 | None:intergenic | 40.0% | |
| AGAAAATGGATACCTGGTAG+AGG | + | chr8_4:53449460-53449479 | None:intergenic | 40.0% | |
| !! | TGCCAAAGGGATTTTTGGAT+TGG | - | chr8_4:53449678-53449697 | Msa1333350:intron | 40.0% |
| AGCCAATCCAAAAATCCCTT+TGG | + | chr8_4:53449683-53449702 | None:intergenic | 40.0% | |
| !! | AGAGTTTGTTGTGCTTCTTG+TGG | - | chr8_4:53449775-53449794 | Msa1333350:intron | 40.0% |
| ! | TTACCCATTGTTGGTTGGTA+AGG | - | chr8_4:53449887-53449906 | Msa1333350:intron | 40.0% |
| ! | TGTTTGGGATTCAGAAGTGA+AGG | + | chr8_4:53450007-53450026 | None:intergenic | 40.0% |
| TGAATCCCAAACAGTTCGAT+TGG | - | chr8_4:53450014-53450033 | Msa1333350:intron | 40.0% | |
| GAATCCCAAACAGTTCGATT+GGG | - | chr8_4:53450015-53450034 | Msa1333350:intron | 40.0% | |
| AATCCCAAACAGTTCGATTG+GGG | - | chr8_4:53450016-53450035 | Msa1333350:intron | 40.0% | |
| CCGGAATCAAAAAGAGACAT+AGG | + | chr8_4:53450333-53450352 | None:intergenic | 40.0% | |
| AAGAATCATACCACACGTTC+CGG | + | chr8_4:53450352-53450371 | None:intergenic | 40.0% | |
| TCTTTGAACTGCGTAAGTCA+TGG | + | chr8_4:53450771-53450790 | None:intergenic | 40.0% | |
| TCCCCTAAATCACTAGAAGT+AGG | - | chr8_4:53450954-53450973 | Msa1333350:intron | 40.0% | |
| CCCTACTTCTAGTGATTTAG+GGG | + | chr8_4:53450958-53450977 | None:intergenic | 40.0% | |
| CCCCTAAATCACTAGAAGTA+GGG | - | chr8_4:53450955-53450974 | Msa1333350:intron | 40.0% | |
| CCCCTACTTCTAGTGATTTA+GGG | + | chr8_4:53450959-53450978 | None:intergenic | 40.0% | |
| CCCTAAATCACTAGAAGTAG+GGG | - | chr8_4:53450956-53450975 | Msa1333350:intron | 40.0% | |
| TCCCCTACTTCTAGTGATTT+AGG | + | chr8_4:53450960-53450979 | None:intergenic | 40.0% | |
| GGATCTAGAGATTGATGAGT+TGG | - | chr8_4:53451015-53451034 | Msa1333350:intron | 40.0% | |
| TGTTAATTGCGTCGTGTAAC+TGG | - | chr8_4:53451137-53451156 | Msa1333350:intron | 40.0% | |
| GTTAATTGCGTCGTGTAACT+GGG | - | chr8_4:53451138-53451157 | Msa1333350:intron | 40.0% | |
| !!! | GCACAGTTCTAGGAATCTTT+TGG | + | chr8_4:53451474-53451493 | None:intergenic | 40.0% |
| GTGTTCAAGGAATTTGTCCA+AGG | + | chr8_4:53451949-53451968 | None:intergenic | 40.0% | |
| TTGGGTTATTGAGAAAAGCC+AGG | - | chr8_4:53451986-53452005 | Msa1333350:CDS | 40.0% | |
| TGGGTTATTGAGAAAAGCCA+GGG | - | chr8_4:53451987-53452006 | Msa1333350:CDS | 40.0% | |
| TACCATTGGAGCACATTAGA+CGG | - | chr8_4:53452084-53452103 | Msa1333350:intron | 40.0% | |
| ! | TCGTTCTTTTCCCTTGTGAG+TGG | - | chr8_4:53449098-53449117 | Msa1333350:three_prime_UTR | 45.0% |
| CGCTATCTTACCACTCACAA+GGG | + | chr8_4:53449111-53449130 | None:intergenic | 45.0% | |
| TCGCTATCTTACCACTCACA+AGG | + | chr8_4:53449112-53449131 | None:intergenic | 45.0% | |
| ! | ATAGCGAACGCGAAGTACTA+GGG | - | chr8_4:53449125-53449144 | Msa1333350:three_prime_UTR | 45.0% |
| CAAGTACAACAGCAAGGACA+AGG | - | chr8_4:53449218-53449237 | Msa1333350:three_prime_UTR | 45.0% | |
| ! | GAAGGCAGAGATTTGATTCG+AGG | + | chr8_4:53449433-53449452 | None:intergenic | 45.0% |
| TCAGATCGTTGCTCGCATAT+TGG | - | chr8_4:53449597-53449616 | Msa1333350:intron | 45.0% | |
| ! | CGTTGCTCGCATATTGGTTA+AGG | - | chr8_4:53449603-53449622 | Msa1333350:intron | 45.0% |
| ! | ATGGGCGGTTTTGCTAGAAT+AGG | + | chr8_4:53449856-53449875 | None:intergenic | 45.0% |
| CAACCAACAATGGGTAACGA+TGG | + | chr8_4:53449884-53449903 | None:intergenic | 45.0% | |
| CATCGTTACCCATTGTTGGT+TGG | - | chr8_4:53449882-53449901 | Msa1333350:intron | 45.0% | |
| ACGCCTTACCAACCAACAAT+GGG | + | chr8_4:53449893-53449912 | None:intergenic | 45.0% | |
| TACGCCTTACCAACCAACAA+TGG | + | chr8_4:53449894-53449913 | None:intergenic | 45.0% | |
| ATCCCAAACAGTTCGATTGG+GGG | - | chr8_4:53450017-53450036 | Msa1333350:intron | 45.0% | |
| !! | TCAGCTATCTTGGCTCTGTT+TGG | + | chr8_4:53450237-53450256 | None:intergenic | 45.0% |
| AAGAGACATAGGCTGAAGTC+TGG | + | chr8_4:53450322-53450341 | None:intergenic | 45.0% | |
| !! | CTTTTTGATTCCGGAACGTG+TGG | - | chr8_4:53450339-53450358 | Msa1333350:intron | 45.0% |
| CTTCTCTTCTTCAGACTGGA+AGG | - | chr8_4:53450808-53450827 | Msa1333350:intron | 45.0% | |
| TGGAAGGTTTCGTCAGTTCT+GGG | - | chr8_4:53450824-53450843 | Msa1333350:intron | 45.0% | |
| CATATAGTTGAAGCTGTGCC+AGG | - | chr8_4:53450867-53450886 | Msa1333350:intron | 45.0% | |
| TAGTGATTTAGGGGAAGACC+TGG | + | chr8_4:53450949-53450968 | None:intergenic | 45.0% | |
| ATGTAGCCAACCTCACTTAG+TGG | - | chr8_4:53451083-53451102 | Msa1333350:CDS | 45.0% | |
| TGTAGCCAACCTCACTTAGT+GGG | - | chr8_4:53451084-53451103 | Msa1333350:CDS | 45.0% | |
| CTTATCCCACTAAGTGAGGT+TGG | + | chr8_4:53451092-53451111 | None:intergenic | 45.0% | |
| CAACCTCACTTAGTGGGATA+AGG | - | chr8_4:53451090-53451109 | Msa1333350:CDS | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+AGG | + | chr8_4:53451096-53451115 | None:intergenic | 45.0% |
| TCACTTAGTGGGATAAGGCT+TGG | - | chr8_4:53451095-53451114 | Msa1333350:CDS | 45.0% | |
| GAACATGAATCGCATAGCCT+TGG | + | chr8_4:53451438-53451457 | None:intergenic | 45.0% | |
| !! | AGTTGGCTACTTGGTGTTCA+AGG | + | chr8_4:53451962-53451981 | None:intergenic | 45.0% |
| CTCAATAACCCAACCAGAGT+TGG | + | chr8_4:53451979-53451998 | None:intergenic | 45.0% | |
| GGGTTATTGAGAAAAGCCAG+GGG | - | chr8_4:53451988-53452007 | Msa1333350:CDS | 45.0% | |
| CACTGCAGATAGTGTACCAT+TGG | - | chr8_4:53452070-53452089 | Msa1333350:intron | 45.0% | |
| ATCCGTCTAATGTGCTCCAA+TGG | + | chr8_4:53452089-53452108 | None:intergenic | 45.0% | |
| ! | GATAGCGAACGCGAAGTACT+AGG | - | chr8_4:53449124-53449143 | Msa1333350:three_prime_UTR | 50.0% |
| GCCGTACAAGTACAACAGCA+AGG | - | chr8_4:53449212-53449231 | Msa1333350:three_prime_UTR | 50.0% | |
| ACAACAGCAAGGACAAGGAC+AGG | - | chr8_4:53449223-53449242 | Msa1333350:three_prime_UTR | 50.0% | |
| CAACAGCAAGGACAAGGACA+GGG | - | chr8_4:53449224-53449243 | Msa1333350:three_prime_UTR | 50.0% | |
| GAGCTGTTCGACAGTGTAAG+CGG | + | chr8_4:53449255-53449274 | None:intergenic | 50.0% | |
| ATACCTGGTAGAGGCGAAGA+AGG | + | chr8_4:53449451-53449470 | None:intergenic | 50.0% | |
| !! | TGGGTAACGATGGCTCTGAT+GGG | + | chr8_4:53449874-53449893 | None:intergenic | 50.0% |
| !! | ATGGGTAACGATGGCTCTGA+TGG | + | chr8_4:53449875-53449894 | None:intergenic | 50.0% |
| GAGCCATCGTTACCCATTGT+TGG | - | chr8_4:53449878-53449897 | Msa1333350:intron | 50.0% | |
| GACCCCCAATCGAACTGTTT+GGG | + | chr8_4:53450022-53450041 | None:intergenic | 50.0% | |
| TGACCCCCAATCGAACTGTT+TGG | + | chr8_4:53450023-53450042 | None:intergenic | 50.0% | |
| CTGGAAGGTTTCGTCAGTTC+TGG | - | chr8_4:53450823-53450842 | Msa1333350:intron | 50.0% | |
| GGATTTGAGCAGGCAATCCA+AGG | - | chr8_4:53451418-53451437 | Msa1333350:intron | 50.0% | |
| ! | TCCTAGAACTGTGCTTGCTG+AGG | - | chr8_4:53451480-53451499 | Msa1333350:intron | 50.0% |
| ACCTCAGCAAGCACAGTTCT+AGG | + | chr8_4:53451484-53451503 | None:intergenic | 50.0% | |
| GAACACCAAGTAGCCAACTC+TGG | - | chr8_4:53451963-53451982 | Msa1333350:CDS | 50.0% | |
| ACCAAGTAGCCAACTCTGGT+TGG | - | chr8_4:53451967-53451986 | Msa1333350:CDS | 50.0% | |
| CCAAGTAGCCAACTCTGGTT+GGG | - | chr8_4:53451968-53451987 | Msa1333350:CDS | 50.0% | |
| ATTGAGAAAAGCCAGGGGAC+AGG | - | chr8_4:53451993-53452012 | Msa1333350:CDS | 50.0% | |
| !! | GTAACGATGGCTCTGATGGG+CGG | + | chr8_4:53449871-53449890 | None:intergenic | 55.0% |
| TGGAGCTGGCATAGCCATGA+GGG | + | chr8_4:53450302-53450321 | None:intergenic | 55.0% | |
| ! | CATAGGCTGAAGTCTGGAGC+TGG | + | chr8_4:53450316-53450335 | None:intergenic | 55.0% |
| CGTGTAACTGGGAAGCCTTG+CGG | - | chr8_4:53451149-53451168 | Msa1333350:intron | 55.0% | |
| CCCAACCAGAGTTGGCTACT+TGG | + | chr8_4:53451971-53451990 | None:intergenic | 55.0% | |
| CAGCAAGGACAAGGACAGGG+AGG | - | chr8_4:53449227-53449246 | Msa1333350:three_prime_UTR | 60.0% | |
| CTGCCTTCTTCGCCTCTACC+AGG | - | chr8_4:53449445-53449464 | Msa1333350:CDS | 60.0% | |
| CTGGAGCTGGCATAGCCATG+AGG | + | chr8_4:53450303-53450322 | None:intergenic | 60.0% | |
| ! | CGATGAGTTGACCTGTCCCC+TGG | + | chr8_4:53452007-53452026 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 53449096 | 53452328 | 53449096 | ID=Msa1333350;Name=Msa1333350 |
| chr8_4 | mRNA | 53449096 | 53452328 | 53449096 | ID=Msa1333350-mRNA-1;Parent=Msa1333350;Name=Msa1333350-mRNA-1;_AED=0.08;_eAED=0.08;_QI=92|1|1|1|1|1|8|201|241 |
| chr8_4 | exon | 53449096 | 53449500 | 53449096 | ID=Msa1333350-mRNA-1:exon:16395;Parent=Msa1333350-mRNA-1 |
| chr8_4 | exon | 53449923 | 53450005 | 53449923 | ID=Msa1333350-mRNA-1:exon:16394;Parent=Msa1333350-mRNA-1 |
| chr8_4 | exon | 53450536 | 53450602 | 53450536 | ID=Msa1333350-mRNA-1:exon:16393;Parent=Msa1333350-mRNA-1 |
| chr8_4 | exon | 53450675 | 53450725 | 53450675 | ID=Msa1333350-mRNA-1:exon:16392;Parent=Msa1333350-mRNA-1 |
| chr8_4 | exon | 53451064 | 53451126 | 53451064 | ID=Msa1333350-mRNA-1:exon:16391;Parent=Msa1333350-mRNA-1 |
| chr8_4 | exon | 53451800 | 53451850 | 53451800 | ID=Msa1333350-mRNA-1:exon:16390;Parent=Msa1333350-mRNA-1 |
| chr8_4 | exon | 53451958 | 53452014 | 53451958 | ID=Msa1333350-mRNA-1:exon:16389;Parent=Msa1333350-mRNA-1 |
| chr8_4 | exon | 53452087 | 53452328 | 53452087 | ID=Msa1333350-mRNA-1:exon:16388;Parent=Msa1333350-mRNA-1 |
| chr8_4 | five_prime_UTR | 53452237 | 53452328 | 53452237 | ID=Msa1333350-mRNA-1:five_prime_utr;Parent=Msa1333350-mRNA-1 |
| chr8_4 | CDS | 53452087 | 53452236 | 53452087 | ID=Msa1333350-mRNA-1:cds;Parent=Msa1333350-mRNA-1 |
| chr8_4 | CDS | 53451958 | 53452014 | 53451958 | ID=Msa1333350-mRNA-1:cds;Parent=Msa1333350-mRNA-1 |
| chr8_4 | CDS | 53451800 | 53451850 | 53451800 | ID=Msa1333350-mRNA-1:cds;Parent=Msa1333350-mRNA-1 |
| chr8_4 | CDS | 53451064 | 53451126 | 53451064 | ID=Msa1333350-mRNA-1:cds;Parent=Msa1333350-mRNA-1 |
| chr8_4 | CDS | 53450675 | 53450725 | 53450675 | ID=Msa1333350-mRNA-1:cds;Parent=Msa1333350-mRNA-1 |
| chr8_4 | CDS | 53450536 | 53450602 | 53450536 | ID=Msa1333350-mRNA-1:cds;Parent=Msa1333350-mRNA-1 |
| chr8_4 | CDS | 53449923 | 53450005 | 53449923 | ID=Msa1333350-mRNA-1:cds;Parent=Msa1333350-mRNA-1 |
| chr8_4 | CDS | 53449297 | 53449500 | 53449297 | ID=Msa1333350-mRNA-1:cds;Parent=Msa1333350-mRNA-1 |
| chr8_4 | three_prime_UTR | 53449096 | 53449296 | 53449096 | ID=Msa1333350-mRNA-1:three_prime_utr;Parent=Msa1333350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
