AlfalfaGEDB | Msa1269070

M. sativa cultivar zhongmu-4 / Msa1269070

KEGG: -
GO: -
PFAM: PF03732.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1269070	A0A2K3NK11	90.830	578	52	1	404	981	1	577	0.0	1102

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0129250	Msa1269070	0.916611	1.445577e-85	-8.615850e-47
Msa0314060	Msa1269070	0.803644	3.158876e-49	-8.615850e-47
Msa0377440	Msa1269070	0.817199	3.733054e-52	-8.615850e-47
Msa0426900	Msa1269070	0.800095	1.692340e-48	-8.615850e-47
Msa0517650	Msa1269070	0.809162	2.168390e-50	-8.615850e-47
Msa0757960	Msa1269070	0.900886	4.675521e-78	-8.615850e-47
Msa1096060	Msa1269070	0.815851	7.479626e-52	-8.615850e-47
Msa1220940	Msa1269070	0.804451	2.146417e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1269070	MtrunA17_Chr5g0404591	94.256	383	22	0	1	383	1	383	0.0	720
Msa1269070	MtrunA17_Chr5g0404591	94.915	59	3	0	982	1040	381	439	1.68e-29	123
Msa1269070	MtrunA17_Chr8g0372911	59.645	394	147	5	1	383	1	393	1.47e-142	434
Msa1269070	MtrunA17_Chr6g0473401	48.485	165	82	1	445	609	19	180	5.00e-47	167
Msa1269070	MtrunA17_Chr4g0041691	23.680	587	375	13	421	985	85	620	1.68e-34	144
Msa1269070	MtrunA17_Chr2g0289051	23.460	422	281	7	454	872	102	484	3.22e-26	114
Msa1269070	MtrunA17_Chr6g0473411	40.972	144	79	2	709	851	1	139	6.00e-24	100
Msa1269070	MtrunA17_Chr6g0472381	28.324	173	119	2	447	619	212	379	1.05e-16	84.3
Msa1269070	MtrunA17_Chr8g0361011	30.263	152	82	5	695	837	71	207	9.76e-14	71.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1269070	AT3G50910.1	45.185	405	194	10	1	383	1	399	3.25e-82	275
Msa1269070	AT5G66480.1	39.206	403	213	8	1	383	1	391	2.87e-53	193

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Find 323 sgRNAs with CRISPR-Local

Find 819 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACACACTGCCAACAC+TGG	0.552966	8_3:+2290094	Msa1269070:CDS
AAAATAAGGTTCCTCGTCCT+CGG	0.562260	8_3:+2287115	Msa1269070:CDS
AAAATGTGTTTCGACTATCA+AGG	0.568754	8_3:+2290727	Msa1269070:CDS
AAACTCAAATTTGTAAGAGG+CGG	0.608085	8_3:+2285978	Msa1269070:five_prime_UTR
AAAGAGGTGAATCCATTGAG+CGG	0.711570	8_3:+2295543	Msa1269070:three_prime_UTR
AAAGTCCCAAACAATTGGGG+AGG	0.650753	8_3:+2285907	Msa1269070:five_prime_UTR
AAATAAGGTTCACATAACAA+AGG	0.660138	8_3:+2285797	None:intergenic
AAATCCACAGGTGGTGCACG+TGG	0.608914	8_3:+2290049	Msa1269070:CDS
AAATCCTGAACCTGTTGAAA+AGG	0.460125	8_3:+2287380	Msa1269070:CDS
AACAGTGGAGGAAAATCCAC+AGG	0.590868	8_3:+2290037	Msa1269070:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATAGAGAATAAGATGGTGAT+AGG	+	chr8_3:2285867-2285886	Msa1269070:five_prime_UTR	30.0%
GCAAAACTCAAATTTGTAAG+AGG	+	chr8_3:2285975-2285994	Msa1269070:five_prime_UTR	30.0%
AAACTCAAATTTGTAAGAGG+CGG	+	chr8_3:2285978-2285997	Msa1269070:five_prime_UTR	30.0%
AAAAAAGACAATAGAGAGAG+AGG	-	chr8_3:2286161-2286180	None:intergenic	30.0%
TTATGCTTTCTCATAGACTT+TGG	+	chr8_3:2286215-2286234	Msa1269070:intron	30.0%
TTGGGAATATCTCTAGTTAT+TGG	+	chr8_3:2286392-2286411	Msa1269070:intron	30.0%
TGGGAATATCTCTAGTTATT+GGG	+	chr8_3:2286393-2286412	Msa1269070:intron	30.0%
CAGTATTAGGATTAGGAATT+TGG	+	chr8_3:2286531-2286550	Msa1269070:intron	30.0%
GCTTATACATAGTACTTATG+TGG	+	chr8_3:2286827-2286846	Msa1269070:intron	30.0%
AGATTGCTAAAAATTGTGCT+TGG	+	chr8_3:2286900-2286919	Msa1269070:five_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_3	gene	2285798	2296335	2285798	ID=Msa1269070;Name=Msa1269070
chr8_3	mRNA	2285798	2296335	2285798	ID=Msa1269070-mRNA-1;Parent=Msa1269070;Name=Msa1269070-mRNA-1;_AED=0.14;_eAED=0.14;_QI=434\|0.4\|0.66\|0.83\|0.6\|0.33\|6\|1181\|1040
chr8_3	exon	2285798	2286150	2285798	ID=Msa1269070-mRNA-1:exon:711;Parent=Msa1269070-mRNA-1
chr8_3	exon	2286895	2287681	2286895	ID=Msa1269070-mRNA-1:exon:712;Parent=Msa1269070-mRNA-1
chr8_3	exon	2287888	2288322	2287888	ID=Msa1269070-mRNA-1:exon:713;Parent=Msa1269070-mRNA-1
chr8_3	exon	2288557	2288622	2288557	ID=Msa1269070-mRNA-1:exon:714;Parent=Msa1269070-mRNA-1
chr8_3	exon	2289243	2290979	2289243	ID=Msa1269070-mRNA-1:exon:715;Parent=Msa1269070-mRNA-1
chr8_3	exon	2294976	2296335	2294976	ID=Msa1269070-mRNA-1:exon:716;Parent=Msa1269070-mRNA-1
chr8_3	five_prime_UTR	2285798	2286150	2285798	ID=Msa1269070-mRNA-1:five_prime_utr;Parent=Msa1269070-mRNA-1
chr8_3	five_prime_UTR	2286895	2286975	2286895	ID=Msa1269070-mRNA-1:five_prime_utr;Parent=Msa1269070-mRNA-1
chr8_3	CDS	2286976	2287681	2286976	ID=Msa1269070-mRNA-1:cds;Parent=Msa1269070-mRNA-1
chr8_3	CDS	2287888	2288322	2287888	ID=Msa1269070-mRNA-1:cds;Parent=Msa1269070-mRNA-1
chr8_3	CDS	2288557	2288622	2288557	ID=Msa1269070-mRNA-1:cds;Parent=Msa1269070-mRNA-1
chr8_3	CDS	2289243	2290979	2289243	ID=Msa1269070-mRNA-1:cds;Parent=Msa1269070-mRNA-1
chr8_3	CDS	2294976	2295154	2294976	ID=Msa1269070-mRNA-1:cds;Parent=Msa1269070-mRNA-1
chr8_3	three_prime_UTR	2295155	2296335	2295155	ID=Msa1269070-mRNA-1:three_prime_utr;Parent=Msa1269070-mRNA-1

Gene Sequence

>Msa1269070

ATGCCGACATATACTGCAATAGCATTTGATAGGTTTTTAGAGACTAGAGCTTCCAAGCCAATTGATAAACCTGCTCCAACTTCAATGCCTGTACCAAATGCTCAAAAACTTGAGAGCACTACTAGTGCTCCACCTGTGAAAAATAAGGTTCCTCGTCCTCGGTTAAAGCCAGCACTTTATACTACACCCGAGGTGAAACAACTTCCAGTTGTAGATTCACCATCTTCATTTCCTCCTTCACCATACATCATAAACCACAAACGTCGTGGCCCTCGTCTCCATAAGAGTTCATCTGAGGCCAGTGTGCTGTCCAAAAAGAATGTTTCGGGTGAGGAAAAAGTTGATGATAAGAGCTTTGATATCTGTGCTGCAAGTTCAGCGGGTGATCTCCAATTCAGTTTTACAAATCCTGAACCTGTTGAAAAGGAGTGTTTGAAGGGTGTCTGTGGTGGTGAATATGATAGAAGCAATGGAAGTGAACTGATGAATGGACACAAAGAACCAGAGAGTAGTAGCTTTGCAAATGATTTGCCCAGGGAAAATGCTCCTGCATTGAATACGTCAAGAGATACAGATATTGAAGACTTCTTTGACCCGCAAGATTCAACGAGTTTCACAAGTAACACTGACGTGGAAGAAAATGCAGGGACAGACCTATCTATGAAATTCAGCAGTCCTGGCGGGGAGTTTTATGATGCTTGGGAAGAACTATCATCGGAAGCTGCTACTCAAAATTCTGCATCTGATGTTGAAGCTGAATTGCGTGAAATGAGATTGAGTCTATTGATGGAGATAGAGAAGCGGAAGCAAGCTGAAGAATCCTTGAACAACATGAGAAATCAATGGGAGAGTATTAGGCAGGGGTTGTATCTAGCAGGAATCGTTTTGCCTGCAGATCTTACAGCTGTTGCTGAGGGTGAGCAGCTGAATTCTGATCCAGTGGAAGACCTATGTCAACAGCTTTATGTTGCTAGGTTCATATCAAATACTATTGGGAGAGCAACTGTTAGGACTGAGGTAGAGATGGAGATGGAAACTCAACTAGAGTCAAAGAACTTTGAGATTGCTCGACTCATGGAACGTCTCCACTGTTATGAGACCATGAATCATGAGATGTCTCAGAGAAACCAGGAAGCAGTGGCCGTAGCTGTGTCGGGGATAGTTGTTTTATTAGGAGTTCAGACTCGCATATCCATGGCAGGACATGAAATGCAGAATCAAAATAAGGAGAACCAGGAGAAGATCATCTCTTTATTGAATTCAAGTAAGAAGAAGAATGTGGGAGAATCATCACAAAATAATGAGTCAGTTGGTAACAAAAAGAAAAATTCTGAATTACATGATGATGCCTTGGATGAATTTCGCCTATCTGTTAAAAAGGTTGAATTACCGATGTTTAATGGTGATGATCCCGCTGGTTGGATCGCCAGGGCGGAAGTTTATTTCAATGTGCAGAACACTACACCAGAAATCAAAGTGAATTTGGCACAATTATGTATGGACGGTCCTACAATCCATTTTTTCAAAGGACTGTTGGAGGAGAATGAAACACTGACGTGGGAAGATTTGAAAGATGCACTTCTTGAAAGGTATGGTGGTGTTAGTGATGGGAATGTATTTGAACAACTTTCTGCACTTCAACAGGAAGGAACGATCGAAGAATACATTGAAGATTTTGAGAGGTTAGTAGCGCAACTGCCCAGATTACCCAATGACCAATATTTGGGTTATTTCGTTCATGGTTTGAATGACAAAATCAGAGGAAAAGTTCGCAGCATGATTGCTATGGGGCCCATGTCAAGAGCAAAGTTAATGAACGTGGCTAGAGCAGTAGAACGTGAATTGGAGGAGGGGCGAAGAGACTGGACATCGCGAAGGTCACATGGTTCACTATCTAGACCCGTTTTTGGTAACAAGATTGTCACACAGAATGAAGGTAGAAATGGCGATTGGGTTATGGTTCGTAATAACAAAGACAATCGTGATCGTTTTCCTGGAGGAAACAGTGGAGGAAAATCCACAGGTGGTGCACGTGGAATGTTTAGTGTTGGACAAAACAAAACACACACTGCCAACACTGGAAATTGGCGTGACAAGAATGTGAGGAATCTGTCTTCACAAGAGATTGCTGACCGTCGTCAAAAAGGACTCTGTTTTAAATGTGGAGGGCCGTATCATCCTCGTCATCAATGTCCAGATAAAAATTTGCGTGTTATGGTGCTTGAGGATGATTCTGAAGATGAAAATGAAGTAAGAGTGTTGAATGATGAAGATGTGGACACAGGTGCAGAAGAGTTGCAATTGAATGTGCTGACTTTTGAAAATGTGTTGACTTTTGATAGACAAACCGAGTATTATCAAGATATGCTCCAATGCATCAGATTGCAAGGGAAAGTAGGGGAGATACCGGTGCTGATGTTGGTTGACAGTGGAGCAAACAAAAATTTCATGTCAAGGCGTCTAGCTTTGGCTTTGGGTTTGCGAATTACCGGGACTCCTGCTAGACGTATCAGATTGGGTGACGGACATGTGGCTTCGACTTTGGGAGAGTGCCATGATGTTATCATTTCTGTTCAAGGGGTTGAATGGGAGATAGATGTTATACTTTTTGAGTTGGGCGGTTATGATCTAGTATTGGGGATGGCATGGCTGACACAAATTGGATGTACATACATCGATTGGGTTGAGAAAAAAATGTGTTTCGACTATCAAGGAGAGTGGATAGAGATCAGAGGAATTCGTACTAGGGAGTGCACTCCATTACAAAATTATGTTGATGAAAATCATTTTGGTCAGTTGCATTGTGATGCTCAACCGGATATGGTGACACCAGATCAGCAATTGGAAATGAAGTCAGTGCTGGATAATTTTGATAATATTTTCAAGGAACCACAAGGATTGCCTCCTGGACGACAACAAGAGCATGCTATACACTTGCTGAATGAGATGGCACGACGCGAGAGGCAAAGAAAGTGCAAGAAGCAGAAATGGATTTGGGGTTCCCTAACGACTGTGATCGCACTTGGTACGGCCGCAGTAGCATGGTCTTATCTTCCTGCTGGTGGAGAGTCGTCCTCCGCAGAAGATCATCCAGTTCCTGAACATGATGATGCAGCTAAATAA

Protein sequence

>Msa1269070

MPTYTAIAFDRFLETRASKPIDKPAPTSMPVPNAQKLESTTSAPPVKNKVPRPRLKPALYTTPEVKQLPVVDSPSSFPPSPYIINHKRRGPRLHKSSSEASVLSKKNVSGEEKVDDKSFDICAASSAGDLQFSFTNPEPVEKECLKGVCGGEYDRSNGSELMNGHKEPESSSFANDLPRENAPALNTSRDTDIEDFFDPQDSTSFTSNTDVEENAGTDLSMKFSSPGGEFYDAWEELSSEAATQNSASDVEAELREMRLSLLMEIEKRKQAEESLNNMRNQWESIRQGLYLAGIVLPADLTAVAEGEQLNSDPVEDLCQQLYVARFISNTIGRATVRTEVEMEMETQLESKNFEIARLMERLHCYETMNHEMSQRNQEAVAVAVSGIVVLLGVQTRISMAGHEMQNQNKENQEKIISLLNSSKKKNVGESSQNNESVGNKKKNSELHDDALDEFRLSVKKVELPMFNGDDPAGWIARAEVYFNVQNTTPEIKVNLAQLCMDGPTIHFFKGLLEENETLTWEDLKDALLERYGGVSDGNVFEQLSALQQEGTIEEYIEDFERLVAQLPRLPNDQYLGYFVHGLNDKIRGKVRSMIAMGPMSRAKLMNVARAVERELEEGRRDWTSRRSHGSLSRPVFGNKIVTQNEGRNGDWVMVRNNKDNRDRFPGGNSGGKSTGGARGMFSVGQNKTHTANTGNWRDKNVRNLSSQEIADRRQKGLCFKCGGPYHPRHQCPDKNLRVMVLEDDSEDENEVRVLNDEDVDTGAEELQLNVLTFENVLTFDRQTEYYQDMLQCIRLQGKVGEIPVLMLVDSGANKNFMSRRLALALGLRITGTPARRIRLGDGHVASTLGECHDVIISVQGVEWEIDVILFELGGYDLVLGMAWLTQIGCTYIDWVEKKMCFDYQGEWIEIRGIRTRECTPLQNYVDENHFGQLHCDAQPDMVTPDQQLEMKSVLDNFDNIFKEPQGLPPGRQQEHAIHLLNEMARRERQRKCKKQKWIWGSLTTVIALGTAAVAWSYLPAGGESSSAEDHPVPEHDDAAK*