AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1096060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1096060 MtrunA17_Chr7g0219041 99.114 677 6 0 1 677 1 677 0.0 1382
Msa1096060 MtrunA17_Chr3g0086881 41.291 666 343 7 13 677 1 619 1.56e-173 509
Msa1096060 MtrunA17_Chr4g0057561 43.029 581 296 13 116 677 126 690 9.27e-138 419
Msa1096060 MtrunA17_Chr8g0344461 38.816 608 318 14 98 666 13 605 2.85e-122 377
Msa1096060 MtrunA17_Chr5g0431731 32.931 662 401 13 16 667 6 634 1.12e-110 348
Msa1096060 MtrunA17_Chr3g0106431 32.730 663 387 11 16 667 6 620 6.95e-100 319
Msa1096060 MtrunA17_Chr1g0177671 32.143 532 313 7 150 666 127 625 1.25e-88 290
Msa1096060 MtrunA17_Chr1g0197101 31.725 539 313 8 154 666 132 641 1.38e-88 290
Msa1096060 MtrunA17_Chr7g0224041 30.948 601 384 15 83 666 64 650 6.33e-86 283
Msa1096060 MtrunA17_Chr2g0327741 32.369 553 333 10 117 666 67 581 1.20e-85 280
Msa1096060 MtrunA17_Chr6g0462011 30.726 537 323 8 150 667 220 726 5.27e-83 277
Msa1096060 MtrunA17_Chr5g0431741 35.669 471 284 8 206 669 237 695 4.69e-82 274
Msa1096060 MtrunA17_Chr4g0030621 29.908 545 362 9 118 660 72 598 6.59e-75 253
Msa1096060 MtrunA17_Chr1g0182041 32.054 521 327 10 151 664 100 600 1.01e-74 252
Msa1096060 MtrunA17_Chr1g0214001 29.912 565 349 12 150 677 123 677 1.26e-73 251
Msa1096060 MtrunA17_Chr1g0182031 31.549 523 328 11 151 664 98 599 3.13e-67 231
Msa1096060 MtrunA17_Chr5g0432091 30.365 438 281 8 241 665 276 702 1.73e-55 201
Msa1096060 MtrunA17_Chr5g0431811 30.645 372 212 5 217 572 268 609 1.95e-48 183
Msa1096060 MtrunA17_Chr5g0431811 33.714 175 112 2 498 669 898 1071 2.77e-20 96.3
Msa1096060 MtrunA17_Chr5g0432041 27.232 448 294 9 225 664 250 673 8.90e-41 158
Msa1096060 MtrunA17_Chr4g0002391 26.519 543 311 15 157 676 174 651 1.32e-35 143
Msa1096060 MtrunA17_Chr5g0431761 27.667 300 198 3 215 514 256 536 1.36e-34 139
Msa1096060 MtrunA17_Chr3g0104851 26.752 471 299 14 209 664 227 666 3.37e-32 132
Msa1096060 MtrunA17_Chr1g0147911 24.112 535 336 12 156 672 183 665 2.12e-29 124
Msa1096060 MtrunA17_Chr1g0152401 25.721 416 283 9 237 637 257 661 2.38e-29 124
Msa1096060 MtrunA17_Chr5g0431971 26.994 326 205 6 348 668 30 327 2.86e-28 116
Msa1096060 MtrunA17_Chr5g0431871 33.898 177 115 1 226 400 1 177 1.25e-27 110
Msa1096060 MtrunA17_Chr2g0300651 22.847 569 353 15 114 665 139 638 4.15e-25 110
Msa1096060 MtrunA17_Chr5g0444661 29.758 289 176 7 319 603 158 423 2.56e-23 103
Msa1096060 MtrunA17_Chr5g0431881 33.143 175 113 2 498 669 53 226 4.35e-21 92.8
Msa1096060 MtrunA17_Chr5g0431991 24.434 221 146 6 187 403 213 416 2.61e-13 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1096060 AT3G29400.1 48.748 679 310 9 12 677 5 658 0.0 583
Msa1096060 AT5G61010.1 40.183 657 353 6 10 665 8 625 1.68e-164 487
Msa1096060 AT5G61010.2 40.183 657 353 6 10 665 8 625 1.68e-164 487
Msa1096060 AT5G50380.1 42.211 597 290 12 109 677 113 682 3.42e-149 449
Msa1096060 AT3G14090.1 38.333 540 295 10 153 666 86 613 3.94e-118 367
Msa1096060 AT1G72470.1 36.438 612 323 15 101 666 30 621 4.05e-114 357
Msa1096060 AT1G54090.1 41.203 449 249 7 226 666 170 611 2.16e-109 344
Msa1096060 AT5G58430.1 31.429 665 392 12 16 667 6 619 4.47e-103 328
Msa1096060 AT5G03540.1 30.396 681 391 15 24 676 13 638 1.43e-90 295
Msa1096060 AT5G03540.2 32.784 546 312 8 151 676 13 523 1.54e-90 291
Msa1096060 AT1G07000.1 30.344 669 372 16 16 667 6 597 2.08e-89 291
Msa1096060 AT5G03540.3 30.029 686 395 14 24 666 13 656 6.60e-89 291
Msa1096060 AT5G52340.1 30.783 562 348 8 115 666 93 623 5.54e-86 283
Msa1096060 AT5G59730.2 32.737 559 350 11 118 668 60 600 4.20e-83 275
Msa1096060 AT5G59730.1 32.737 559 350 11 118 668 60 600 5.77e-83 275
Msa1096060 AT2G28640.1 30.577 520 328 6 151 669 94 581 1.49e-81 270
Msa1096060 AT5G13150.1 31.690 568 356 14 114 667 96 645 2.50e-81 271
Msa1096060 AT1G07725.1 32.563 519 324 9 151 666 96 591 5.35e-81 269
Msa1096060 AT5G13990.1 30.635 630 353 17 76 667 99 682 1.51e-79 267
Msa1096060 AT2G39380.1 29.211 558 365 7 118 667 76 611 7.73e-77 258
Msa1096060 AT3G09520.1 29.000 600 367 13 88 664 41 604 1.74e-70 241
Msa1096060 AT5G52350.1 30.684 453 284 4 221 666 148 577 3.15e-69 237
Msa1096060 AT3G09530.1 28.996 538 349 8 141 666 86 602 5.79e-65 226
Msa1096060 AT3G55150.1 28.342 561 368 9 117 667 75 611 3.22e-64 224
Msa1096060 AT2G28650.1 29.320 515 307 9 151 664 96 554 5.62e-59 209
Msa1096060 AT4G31540.1 25.056 443 303 7 232 664 231 654 1.70e-33 137
Msa1096060 AT1G51640.1 24.169 451 297 9 237 665 199 626 6.25e-23 104

Find 170 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGTAGTGATTAGTGTTTC+TGG 0.079994 7_3:+19695522 Msa1096060:five_prime_UTR
GTTCAAAAGGTTGCCTATTC+TGG 0.158452 7_3:-19696284 None:intergenic
TCTAACAATGGCTTGTATTT+TGG 0.182205 7_3:+19697830 Msa1096060:three_prime_UTR
AATCTTTGTTAGGGTTTATC+TGG 0.212314 7_3:+19696668 Msa1096060:CDS
AGACATATTGTGATGGCTTT+AGG 0.215581 7_3:+19695832 Msa1096060:CDS
TCAATCGATGATTTGGGATT+TGG 0.227503 7_3:+19696083 Msa1096060:CDS
GAGAAGGAGGAGGGGAAGAT+AGG 0.232008 7_3:+19695937 Msa1096060:CDS
CAAAGATCAAAAGATGGATT+TGG 0.241414 7_3:+19696637 Msa1096060:CDS
CTTCTCACTTTGTATGTTCA+TGG 0.251343 7_3:-19695920 None:intergenic
GTTCGCCTTCTCCGAAAATT+TGG 0.255340 7_3:-19696713 None:intergenic
AGGTTTGAAATTGAAGATTT+TGG 0.260620 7_3:+19695706 Msa1096060:five_prime_UTR
GGGCTTTGAAAATCTTTGTT+AGG 0.261655 7_3:+19696658 Msa1096060:CDS
AGGAAGATCAATCGATGATT+TGG 0.283223 7_3:+19696076 Msa1096060:CDS
GACATATTGTGATGGCTTTA+GGG 0.283742 7_3:+19695833 Msa1096060:CDS
TATTGAAGATGTCTTGAAAA+TGG 0.283952 7_3:+19696596 Msa1096060:CDS
TGATTTAGAAAATTATCTTT+TGG 0.292941 7_3:+19697724 Msa1096060:CDS
TACATGGCTGAAAAGGTTAA+AGG 0.293386 7_3:+19697338 Msa1096060:CDS
ACCAATCTCAAGTTTGTCTA+TGG 0.294396 7_3:-19695008 None:intergenic
TTCCATTCTCAACTTTCTTA+AGG 0.294818 7_3:+19697457 Msa1096060:CDS
AGTTGTTGCAAAATCCTATT+AGG 0.296540 7_3:+19697768 Msa1096060:CDS
CAATCGATGATTTGGGATTT+GGG 0.298646 7_3:+19696084 Msa1096060:CDS
GTTAGAATTTGAAGTTGTTT+TGG 0.303700 7_3:+19695649 Msa1096060:five_prime_UTR
TTAAAGTGATTCAAGCTTAT+AGG 0.315348 7_3:+19697642 Msa1096060:CDS
ACAACGACTTGGTTTGATTC+AGG 0.317391 7_3:+19696035 Msa1096060:CDS
AGGAGGAGGGGAAGATAGGG+AGG 0.319656 7_3:+19695941 Msa1096060:CDS
TGTTTGATGCAGGTGTAATA+AGG 0.320050 7_3:+19695436 Msa1096060:intron
TATTTACCTTCCTGAAAATC+AGG 0.326364 7_3:-19695306 None:intergenic
AAGCTTATACCATTGTTAGA+AGG 0.328404 7_3:+19696526 Msa1096060:CDS
TCGGCTTCGAGGATATTTAC+AGG 0.329702 7_3:+19697555 Msa1096060:CDS
TGCTATTATCATCTCCTAAT+AGG 0.331305 7_3:-19697782 None:intergenic
AAAGATCAAAAGATGGATTT+GGG 0.331630 7_3:+19696638 Msa1096060:CDS
ACAAAACAAGCTTGACTAAC+AGG 0.350658 7_3:-19696735 None:intergenic
CTTTGCAATGTTTGTGTCCA+AGG 0.354805 7_3:+19697998 Msa1096060:three_prime_UTR
GAAGATAGGGAGGGAAAAGG+AGG 0.356692 7_3:+19695951 Msa1096060:CDS
AGATTTGCGGATTTCTATAT+CGG 0.356841 7_3:+19697619 Msa1096060:CDS
TTCAGGAGAAAATAATGAAA+TGG 0.362671 7_3:+19696052 Msa1096060:CDS
AATGAAAATAAATAAAATAA+TGG 0.365248 7_3:-19695050 None:intergenic
TTTGGTGAAGCTATGTCTAT+TGG 0.365289 7_3:+19696795 Msa1096060:CDS
AGAAGGAGGAGGGGAAGATA+GGG 0.365916 7_3:+19695938 Msa1096060:CDS
CTCAACTTTCTTAAGGATGA+AGG 0.371916 7_3:+19697464 Msa1096060:CDS
TGACATCAATGCTTTGTATT+CGG 0.372086 7_3:+19696884 Msa1096060:CDS
TTCAGCTTCGCGAAGATTTG+CGG 0.372177 7_3:+19697606 Msa1096060:CDS
ATTCAGTGCTTCACTGTAAT+CGG 0.383314 7_3:-19697090 None:intergenic
TTGTAGTGATTAGTGTTTCT+GGG 0.385784 7_3:+19695523 Msa1096060:five_prime_UTR
GGGGAAGATAGGGAGGGAAA+AGG 0.388497 7_3:+19695948 Msa1096060:CDS
AAGAAGATTCTGGCTGATCT+TGG 0.397682 7_3:+19695883 Msa1096060:CDS
AATGAACAAACACTCATCTA+AGG 0.398840 7_3:-19696553 None:intergenic
GGAAGATCAATCGATGATTT+GGG 0.400737 7_3:+19696077 Msa1096060:CDS
TTGGCTTCTGTTATCATCTT+CGG 0.401388 7_3:-19697177 None:intergenic
CAATGGCTGTTGAGGAATCT+AGG 0.406090 7_3:+19695761 Msa1096060:exon
TTGAAGAATTTGATTATCAA+TGG 0.406925 7_3:+19695744 Msa1096060:exon
AAAATTTGAATATCTCGTAT+TGG 0.407384 7_3:-19694955 None:intergenic
GGACGAGGTGGACGAGGAGG+AGG 0.408834 7_3:+19695990 Msa1096060:CDS
TCTTCGCGAAGCTGAACATC+TGG 0.409566 7_3:-19697599 None:intergenic
GGCTTTGAAAATCTTTGTTA+GGG 0.412401 7_3:+19696659 Msa1096060:CDS
TCAGGAGAAAATAATGAAAT+GGG 0.414181 7_3:+19696053 Msa1096060:CDS
GTGTTTGTTCATTCTTGAAA+TGG 0.417456 7_3:+19696563 Msa1096060:CDS
TTCGGACGAGGTTGGTTCCT+CGG 0.417915 7_3:+19696902 Msa1096060:CDS
CGTGTCAGGTGACGATGAAA+TGG 0.419107 7_3:-19697144 None:intergenic
TATATGCCTCAAGGCCTACT+TGG 0.420731 7_3:+19698054 Msa1096060:three_prime_UTR
GAAAATGGAATGGGGTACTT+TGG 0.421152 7_3:+19696611 Msa1096060:CDS
CCAAGACTGAAGCAAATGAT+AGG 0.421729 7_3:-19697238 None:intergenic
CAAGCTTATAGGACATTTGT+TGG 0.424622 7_3:+19697653 Msa1096060:CDS
CCTACATTACATGGCTGAAA+AGG 0.424669 7_3:+19697331 Msa1096060:CDS
AAATACTCAGACGTTTCTTC+AGG 0.429562 7_3:-19696108 None:intergenic
GAGAATTCGTATCAATTTCT+CGG 0.430289 7_3:-19696829 None:intergenic
TTCGTATCAATTTCTCGGGT+TGG 0.433899 7_3:-19696824 None:intergenic
CCTATCATTTGCTTCAGTCT+TGG 0.436027 7_3:+19697238 Msa1096060:CDS
AGCGAGGAAGATGTTGTTGA+TGG 0.439521 7_3:+19696330 Msa1096060:CDS
TTCTCTTCTCTTTCTAACTC+AGG 0.440235 7_3:-19695793 None:intergenic
TGTCATTGATTTAGTTCATC+CGG 0.441468 7_3:+19696434 Msa1096060:CDS
ATCCTTAAGAAAGTTGAGAA+TGG 0.446088 7_3:-19697459 None:intergenic
CGGCTGTGATTCCTGATCTC+AGG 0.446347 7_3:+19696454 Msa1096060:CDS
TCTGAACTTAGGATCATATT+CGG 0.456601 7_3:+19697362 Msa1096060:CDS
GCAACCTGCTTATCCAGAAT+AGG 0.463293 7_3:+19696271 Msa1096060:CDS
TGTTCTTGGCTTTGATTGGT+GGG 0.463543 7_3:+19695486 Msa1096060:five_prime_UTR
CTGTTATCATCTTCGGTACC+CGG 0.467583 7_3:-19697170 None:intergenic
AGAATTCGTATCAATTTCTC+GGG 0.468076 7_3:-19696828 None:intergenic
ACATGGCTGAAAAGGTTAAA+GGG 0.470527 7_3:+19697339 Msa1096060:CDS
GTGTTGTGTTTGTGTTAGAA+TGG 0.473536 7_3:-19695141 None:intergenic
TCGGTACCCGGACTCGTGTC+AGG 0.474489 7_3:-19697158 None:intergenic
AATGGATCCGAAAACACAAC+TGG 0.475821 7_3:+19697390 Msa1096060:CDS
AAGCTTCTACCTCGGCTTCG+AGG 0.476916 7_3:+19697544 Msa1096060:CDS
CACGAGGTTCTGAACAGATT+GGG 0.480214 7_3:+19696939 Msa1096060:CDS
TTGTTCTTGGCTTTGATTGG+TGG 0.480339 7_3:+19695485 Msa1096060:five_prime_UTR
AAGTGATGAAAAGAAGATTC+TGG 0.481173 7_3:+19695873 Msa1096060:CDS
CCGTCAACAACGCCTTTAGT+TGG 0.482370 7_3:+19697014 Msa1096060:CDS
TCCTGGTAGATTTCCCTCAA+TGG 0.483428 7_3:+19697205 Msa1096060:CDS
CATTATATGTATGTAATGAT+TGG 0.487485 7_3:+19697882 Msa1096060:three_prime_UTR
GCGCATATTGATCGAGAAGT+TGG 0.488485 7_3:+19696149 Msa1096060:CDS
CAATGCTTTGTATTCGGACG+AGG 0.488922 7_3:+19696890 Msa1096060:CDS
AGATGTCTTGAAAATGGAAT+GGG 0.491461 7_3:+19696602 Msa1096060:CDS
GATATGTTATGAATTATCTT+CGG 0.492481 7_3:+19697060 Msa1096060:CDS
GAGACATACTCAGGTTCAAA+AGG 0.492494 7_3:-19696297 None:intergenic
GCCATAGACAAACTTGAGAT+TGG 0.497133 7_3:+19695007 Msa1096060:five_prime_UTR
TGTTCATTCTTGAAATGGAA+AGG 0.497581 7_3:+19696568 Msa1096060:CDS
CCAACTAAAGGCGTTGTTGA+CGG 0.497916 7_3:-19697014 None:intergenic
GTTGCCTATTCTGGATAAGC+AGG 0.498736 7_3:-19696275 None:intergenic
TTGATTATCAATGGCTGTTG+AGG 0.499717 7_3:+19695753 Msa1096060:exon
AAAGGAGGATGATATAGATA+AGG 0.499854 7_3:+19695966 Msa1096060:CDS
CTTATAGGACATTTGTTGGA+AGG 0.502026 7_3:+19697657 Msa1096060:CDS
CCACGAGGTTCTGAACAGAT+TGG 0.503504 7_3:+19696938 Msa1096060:CDS
AGGAATTGCCGCGCCATTGA+GGG 0.506822 7_3:-19697218 None:intergenic
TTTACAGGATTCAAACAGCT+TGG 0.507788 7_3:+19697570 Msa1096060:CDS
TTTGCGATACACCTGAGATC+AGG 0.508198 7_3:-19696465 None:intergenic
ATCAATTTCTCGGGTTGGTG+AGG 0.514697 7_3:-19696819 None:intergenic
AGGTTAAAGGGTCTGAACTT+AGG 0.515044 7_3:+19697351 Msa1096060:CDS
TGTATCCCTCCACCAACTAA+AGG 0.515506 7_3:-19697026 None:intergenic
GAGGAGGAGGAAGAAGGTGT+TGG 0.517714 7_3:+19696003 Msa1096060:CDS
TCAACAACGCCTTTAGTTGG+TGG 0.518800 7_3:+19697017 Msa1096060:CDS
AACAGAAGCCAAGCATCTCC+TGG 0.521198 7_3:+19697188 Msa1096060:CDS
TCGTCACCTGACACGAGTCC+GGG 0.521282 7_3:+19697152 Msa1096060:CDS
AGCTTATACCATTGTTAGAA+GGG 0.522929 7_3:+19696527 Msa1096060:CDS
AATGAACAACCTACATTACA+TGG 0.524061 7_3:+19697322 Msa1096060:CDS
GAAATCTACCAGGAGATGCT+TGG 0.524343 7_3:-19697196 None:intergenic
TGGTTTCAAAGATCAAAAGA+TGG 0.529315 7_3:+19696631 Msa1096060:CDS
AAGATGTCTTGAAAATGGAA+TGG 0.530741 7_3:+19696601 Msa1096060:CDS
TAAGGAGGACGAGGTGGACG+AGG 0.533562 7_3:+19695984 Msa1096060:CDS
GGGTTTATCTGGCAAGTGAA+AGG 0.533899 7_3:+19696679 Msa1096060:CDS
GGAGGATGATATAGATAAGG+AGG 0.534132 7_3:+19695969 Msa1096060:CDS
GGCTTATAGTGTTCTTCAGA+CGG 0.538239 7_3:+19696221 Msa1096060:CDS
TCTGAAAGATCAAGAAGAAG+AGG 0.540005 7_3:+19697118 Msa1096060:CDS
TGATATAGATAAGGAGGACG+AGG 0.540858 7_3:+19695975 Msa1096060:CDS
GAATACAAAGCATTGATGTC+AGG 0.541545 7_3:-19696882 None:intergenic
ACAACGCCTTTAGTTGGTGG+AGG 0.547732 7_3:+19697020 Msa1096060:CDS
TGAAATACGAGAGAGCTAGT+TGG 0.555215 7_3:+19697432 Msa1096060:CDS
GTGGACGAGGAGGAGGAAGA+AGG 0.558808 7_3:+19695997 Msa1096060:CDS
GGAGGACGAGGTGGACGAGG+AGG 0.563413 7_3:+19695987 Msa1096060:CDS
TTCATAACATATCTCGCCAA+TGG 0.563562 7_3:-19697050 None:intergenic
GCCATTGAGGGAAATCTACC+AGG 0.565256 7_3:-19697206 None:intergenic
GGATCATATTCGGAGACGAA+TGG 0.566493 7_3:+19697372 Msa1096060:CDS
TTCTTCAGACGGCTATGACA+CGG 0.570975 7_3:+19696232 Msa1096060:CDS
TAGGAATTGCCGCGCCATTG+AGG 0.571255 7_3:-19697219 None:intergenic
TTTGAGACAGAATTTGAACC+GGG 0.573177 7_3:-19697497 None:intergenic
ATAAATAAATAAATCCAAGT+AGG 0.577610 7_3:-19698068 None:intergenic
AAGTTACGAAGCTTCTACCT+CGG 0.578858 7_3:+19697536 Msa1096060:CDS
TGTAAATATCCTCGAAGCCG+AGG 0.581914 7_3:-19697553 None:intergenic
GCTTTGTATTCGGACGAGGT+TGG 0.582361 7_3:+19696894 Msa1096060:CDS
GGAGGAGGGGAAGATAGGGA+GGG 0.582716 7_3:+19695942 Msa1096060:CDS
GTAGATAATTATATGCCTCA+AGG 0.585702 7_3:+19698045 Msa1096060:three_prime_UTR
GCGAGGAAGATGTTGTTGAT+GGG 0.586419 7_3:+19696331 Msa1096060:CDS
TGGTGGAGGGATACATCCAT+TGG 0.593262 7_3:+19697034 Msa1096060:CDS
CATGAACATACAAAGTGAGA+AGG 0.595930 7_3:+19695921 Msa1096060:CDS
CAACGCCTTTAGTTGGTGGA+GGG 0.597098 7_3:+19697021 Msa1096060:CDS
TGTGTTAGAATGGTAAAATG+AGG 0.598307 7_3:-19695131 None:intergenic
GGAGAAAATAATGAAATGGG+AGG 0.598922 7_3:+19696056 Msa1096060:CDS
GATCGAAACGAGACATACTC+AGG 0.599078 7_3:-19696306 None:intergenic
CATACAAAGTGAGAAGGAGG+AGG 0.600227 7_3:+19695927 Msa1096060:CDS
CTGAGATCAGGAATCACAGC+CGG 0.603127 7_3:-19696453 None:intergenic
ATCAATGACATGCTCTTCAG+TGG 0.607832 7_3:-19696421 None:intergenic
TACAAAGTGAGAAGGAGGAG+GGG 0.610000 7_3:+19695929 Msa1096060:CDS
GATGAAGGAATTCACGCTCC+CGG 0.612751 7_3:+19697479 Msa1096060:CDS
GGTGTTATTGAACAACGACT+TGG 0.615375 7_3:+19696024 Msa1096060:CDS
TTTATCTGGCAAGTGAAAGG+TGG 0.615613 7_3:+19696682 Msa1096060:CDS
GCACACTAAGTGAAACAAGA+AGG 0.618287 7_3:-19697860 None:intergenic
TATAGATAAGGAGGACGAGG+TGG 0.620009 7_3:+19695978 Msa1096060:CDS
TAAGGCATCCCTTCTAACAA+TGG 0.621969 7_3:-19696535 None:intergenic
AATCTTCTGCAAGATCTGCA+AGG 0.627162 7_3:-19695248 None:intergenic
ATACAAAGTGAGAAGGAGGA+GGG 0.633932 7_3:+19695928 Msa1096060:CDS
GAACATACAAAGTGAGAAGG+AGG 0.636230 7_3:+19695924 Msa1096060:CDS
ATATTGATCGAGAAGTTGGA+AGG 0.643451 7_3:+19696153 Msa1096060:CDS
ATAAATCCAAGTAGGCCTTG+AGG 0.646028 7_3:-19698060 None:intergenic
GTAGATTTCCCTCAATGGCG+CGG 0.659563 7_3:+19697210 Msa1096060:CDS
TGCAGCAAGACATATTGTGA+TGG 0.663518 7_3:+19695825 Msa1096060:CDS
AGTCTTGGAGAACAATCTCG+AGG 0.679517 7_3:+19697253 Msa1096060:CDS
AAATAAATAAAATAATGGTG+TGG 0.709002 7_3:-19695045 None:intergenic
GGTTCACTTTGAATGCCACG+AGG 0.713802 7_3:+19696923 Msa1096060:CDS
CCAATCTGTTCAGAACCTCG+TGG 0.714380 7_3:-19696938 None:intergenic
GATGTCTTGAAAATGGAATG+GGG 0.730786 7_3:+19696603 Msa1096060:CDS
GTGGCATTCAAAGTGAACCG+AGG 0.739746 7_3:-19696919 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAGATATTCAAATTTTTTAA+GGG + chr7_3:19694962-19694981 Msa1096060:five_prime_UTR 15.0%
!! AAATAAATAAAATAATGGTG+TGG - chr7_3:19695048-19695067 None:intergenic 15.0%
!!! TGATTTAGAAAATTATCTTT+TGG + chr7_3:19697724-19697743 Msa1096060:CDS 15.0%
!!! CGAGATATTCAAATTTTTTA+AGG + chr7_3:19694961-19694980 Msa1096060:five_prime_UTR 20.0%
!!! AGTTTTTGGAGTTTTTAAAA+GGG - chr7_3:19695101-19695120 None:intergenic 20.0%
!!! AAGTTTTTGGAGTTTTTAAA+AGG - chr7_3:19695102-19695121 None:intergenic 20.0%
!!! AATTCAGTGTTTTCTTTAAT+TGG + chr7_3:19695376-19695395 Msa1096060:intron 20.0%
!!! ATTCAGTGTTTTCTTTAATT+GGG + chr7_3:19695377-19695396 Msa1096060:intron 20.0%
!!! TTTCTTTAATTGGGTTTTTT+TGG + chr7_3:19695386-19695405 Msa1096060:intron 20.0%
!! CAAGAACAAAAAAATCAAAA+GGG - chr7_3:19695474-19695493 None:intergenic 20.0%
!!! GAAAAAAGTTTGAATTTTGA+AGG + chr7_3:19695598-19695617 Msa1096060:five_prime_UTR 20.0%
!!! TGATTGTTGTTGTTTTTTTT+GGG + chr7_3:19695672-19695691 Msa1096060:five_prime_UTR 20.0%
!! TTGAAGAATTTGATTATCAA+TGG + chr7_3:19695744-19695763 Msa1096060:exon 20.0%
!! GATATGTTATGAATTATCTT+CGG + chr7_3:19697060-19697079 Msa1096060:CDS 20.0%
!!! AATCCATTTTTATCTAACAA+TGG + chr7_3:19697818-19697837 Msa1096060:three_prime_UTR 20.0%
!! CATTATATGTATGTAATGAT+TGG + chr7_3:19697882-19697901 Msa1096060:three_prime_UTR 20.0%
!! TAAAGAATACATTGCAAAAA+AGG - chr7_3:19697929-19697948 None:intergenic 20.0%
!! GAGGAAAAAAACAAAGTTTT+TGG - chr7_3:19695115-19695134 None:intergenic 25.0%
!!! TTTATCTTGTTTTGTTCATC+TGG + chr7_3:19695335-19695354 Msa1096060:intron 25.0%
!!! TTATCTTGTTTTGTTCATCT+GGG + chr7_3:19695336-19695355 Msa1096060:intron 25.0%
!!! TTTTTGTTTTTGTTTGATGC+AGG + chr7_3:19695426-19695445 Msa1096060:intron 25.0%
! CCAAGAACAAAAAAATCAAA+AGG - chr7_3:19695475-19695494 None:intergenic 25.0%
!!! CCTTTTGATTTTTTTGTTCT+TGG + chr7_3:19695472-19695491 Msa1096060:five_prime_UTR 25.0%
!!! AATGCTTGAATTGATTTTGA+AGG + chr7_3:19695574-19695593 Msa1096060:five_prime_UTR 25.0%
!!! TGTTTTTGAAGAAGTGAAAA+AGG + chr7_3:19695627-19695646 Msa1096060:five_prime_UTR 25.0%
!!! GTTAGAATTTGAAGTTGTTT+TGG + chr7_3:19695649-19695668 Msa1096060:five_prime_UTR 25.0%
!!! GTGATTGTTGTTGTTTTTTT+TGG + chr7_3:19695671-19695690 Msa1096060:five_prime_UTR 25.0%
!!! AGGTTTGAAATTGAAGATTT+TGG + chr7_3:19695706-19695725 Msa1096060:five_prime_UTR 25.0%
! TTCAGGAGAAAATAATGAAA+TGG + chr7_3:19696052-19696071 Msa1096060:CDS 25.0%
! TCAGGAGAAAATAATGAAAT+GGG + chr7_3:19696053-19696072 Msa1096060:CDS 25.0%
! TATTGAAGATGTCTTGAAAA+TGG + chr7_3:19696596-19696615 Msa1096060:CDS 25.0%
!! AAAGATCAAAAGATGGATTT+GGG + chr7_3:19696638-19696657 Msa1096060:CDS 25.0%
! TTAAAGTGATTCAAGCTTAT+AGG + chr7_3:19697642-19697661 Msa1096060:CDS 25.0%
!! TATCTTTTGGATTTCTTTGA+AGG + chr7_3:19697737-19697756 Msa1096060:CDS 25.0%
! AAGCCATTGTTAGATAAAAA+TGG - chr7_3:19697824-19697843 None:intergenic 25.0%
TGTGTTAGAATGGTAAAATG+AGG - chr7_3:19695134-19695153 None:intergenic 30.0%
TATTTACCTTCCTGAAAATC+AGG - chr7_3:19695309-19695328 None:intergenic 30.0%
!!! TTTTTGTTCTTGGCTTTGAT+TGG + chr7_3:19695482-19695501 Msa1096060:five_prime_UTR 30.0%
TTGTAGTGATTAGTGTTTCT+GGG + chr7_3:19695523-19695542 Msa1096060:five_prime_UTR 30.0%
AAGTGATGAAAAGAAGATTC+TGG + chr7_3:19695873-19695892 Msa1096060:CDS 30.0%
AAAGGAGGATGATATAGATA+AGG + chr7_3:19695966-19695985 Msa1096060:CDS 30.0%
!! AAGAGTATAAGTTTTTGCAG+AGG + chr7_3:19696199-19696218 Msa1096060:CDS 30.0%
! AGAGTATAAGTTTTTGCAGA+GGG + chr7_3:19696200-19696219 Msa1096060:CDS 30.0%
!!! TTTTGGTGATGATTCATTTG+AGG + chr7_3:19696368-19696387 Msa1096060:CDS 30.0%
!! TGTCATTGATTTAGTTCATC+CGG + chr7_3:19696434-19696453 Msa1096060:CDS 30.0%
AAGCTTATACCATTGTTAGA+AGG + chr7_3:19696526-19696545 Msa1096060:CDS 30.0%
AGCTTATACCATTGTTAGAA+GGG + chr7_3:19696527-19696546 Msa1096060:CDS 30.0%
AATGAACAAACACTCATCTA+AGG - chr7_3:19696556-19696575 None:intergenic 30.0%
GTGTTTGTTCATTCTTGAAA+TGG + chr7_3:19696563-19696582 Msa1096060:CDS 30.0%
TGTTCATTCTTGAAATGGAA+AGG + chr7_3:19696568-19696587 Msa1096060:CDS 30.0%
AAGATGTCTTGAAAATGGAA+TGG + chr7_3:19696601-19696620 Msa1096060:CDS 30.0%
AGATGTCTTGAAAATGGAAT+GGG + chr7_3:19696602-19696621 Msa1096060:CDS 30.0%
TGGTTTCAAAGATCAAAAGA+TGG + chr7_3:19696631-19696650 Msa1096060:CDS 30.0%
! CAAAGATCAAAAGATGGATT+TGG + chr7_3:19696637-19696656 Msa1096060:CDS 30.0%
!! GGCTTTGAAAATCTTTGTTA+GGG + chr7_3:19696659-19696678 Msa1096060:CDS 30.0%
AATCTTTGTTAGGGTTTATC+TGG + chr7_3:19696668-19696687 Msa1096060:CDS 30.0%
! ATTTTGCAGCTTCTGAATTT+TGG + chr7_3:19696777-19696796 Msa1096060:CDS 30.0%
AGAATTCGTATCAATTTCTC+GGG - chr7_3:19696831-19696850 None:intergenic 30.0%
GAGAATTCGTATCAATTTCT+CGG - chr7_3:19696832-19696851 None:intergenic 30.0%
TGACATCAATGCTTTGTATT+CGG + chr7_3:19696884-19696903 Msa1096060:CDS 30.0%
AATGAACAACCTACATTACA+TGG + chr7_3:19697322-19697341 Msa1096060:CDS 30.0%
TCTGAACTTAGGATCATATT+CGG + chr7_3:19697362-19697381 Msa1096060:CDS 30.0%
TTCCATTCTCAACTTTCTTA+AGG + chr7_3:19697457-19697476 Msa1096060:CDS 30.0%
ATCCTTAAGAAAGTTGAGAA+TGG - chr7_3:19697462-19697481 None:intergenic 30.0%
!!! TTTTGAGACAGAATTTGAAC+CGG - chr7_3:19697501-19697520 None:intergenic 30.0%
TGTCTCAAAAACTCTTCTAA+AGG + chr7_3:19697511-19697530 Msa1096060:CDS 30.0%
AGATTTGCGGATTTCTATAT+CGG + chr7_3:19697619-19697638 Msa1096060:CDS 30.0%
AGTTGTTGCAAAATCCTATT+AGG + chr7_3:19697768-19697787 Msa1096060:CDS 30.0%
TGCTATTATCATCTCCTAAT+AGG - chr7_3:19697785-19697804 None:intergenic 30.0%
!! TCTAACAATGGCTTGTATTT+TGG + chr7_3:19697830-19697849 Msa1096060:three_prime_UTR 30.0%
GTAGATAATTATATGCCTCA+AGG + chr7_3:19698045-19698064 Msa1096060:three_prime_UTR 30.0%
ACCAATCTCAAGTTTGTCTA+TGG - chr7_3:19695011-19695030 None:intergenic 35.0%
GTGTTGTGTTTGTGTTAGAA+TGG - chr7_3:19695144-19695163 None:intergenic 35.0%
CAAGCAAAAATAGCACTGTA+CGG - chr7_3:19695218-19695237 None:intergenic 35.0%
!! TCAACTTGTTCCTGATTTTC+AGG + chr7_3:19695296-19695315 Msa1096060:five_prime_UTR 35.0%
TGTTTGATGCAGGTGTAATA+AGG + chr7_3:19695436-19695455 Msa1096060:intron 35.0%
!!! TTGATTGGTGGGTTTTGTTA+AGG + chr7_3:19695497-19695516 Msa1096060:five_prime_UTR 35.0%
GTTGTAGTGATTAGTGTTTC+TGG + chr7_3:19695522-19695541 Msa1096060:five_prime_UTR 35.0%
!!! GTTGTTGTTTTTTTTGGGAG+AGG + chr7_3:19695677-19695696 Msa1096060:five_prime_UTR 35.0%
!!! TTTTTTGGGAGAGGTGAAAA+AGG + chr7_3:19695686-19695705 Msa1096060:five_prime_UTR 35.0%
TTGATTATCAATGGCTGTTG+AGG + chr7_3:19695753-19695772 Msa1096060:exon 35.0%
TTCTCTTCTCTTTCTAACTC+AGG - chr7_3:19695796-19695815 None:intergenic 35.0%
AGACATATTGTGATGGCTTT+AGG + chr7_3:19695832-19695851 Msa1096060:CDS 35.0%
! GACATATTGTGATGGCTTTA+GGG + chr7_3:19695833-19695852 Msa1096060:CDS 35.0%
CTTCTCACTTTGTATGTTCA+TGG - chr7_3:19695923-19695942 None:intergenic 35.0%
CATGAACATACAAAGTGAGA+AGG + chr7_3:19695921-19695940 Msa1096060:CDS 35.0%
GGAGAAAATAATGAAATGGG+AGG + chr7_3:19696056-19696075 Msa1096060:CDS 35.0%
AGGAAGATCAATCGATGATT+TGG + chr7_3:19696076-19696095 Msa1096060:CDS 35.0%
GGAAGATCAATCGATGATTT+GGG + chr7_3:19696077-19696096 Msa1096060:CDS 35.0%
! TCAATCGATGATTTGGGATT+TGG + chr7_3:19696083-19696102 Msa1096060:CDS 35.0%
! CAATCGATGATTTGGGATTT+GGG + chr7_3:19696084-19696103 Msa1096060:CDS 35.0%
AAATACTCAGACGTTTCTTC+AGG - chr7_3:19696111-19696130 None:intergenic 35.0%
ATATTGATCGAGAAGTTGGA+AGG + chr7_3:19696153-19696172 Msa1096060:CDS 35.0%
! GGGAATTCTTTTGTCTCTTT+TGG + chr7_3:19696351-19696370 Msa1096060:CDS 35.0%
GATGTCTTGAAAATGGAATG+GGG + chr7_3:19696603-19696622 Msa1096060:CDS 35.0%
!! GGGCTTTGAAAATCTTTGTT+AGG + chr7_3:19696658-19696677 Msa1096060:CDS 35.0%
! TGGCTTAGTGACCAAATTTT+CGG + chr7_3:19696702-19696721 Msa1096060:CDS 35.0%
ACAAAACAAGCTTGACTAAC+AGG - chr7_3:19696738-19696757 None:intergenic 35.0%
TTTGGTGAAGCTATGTCTAT+TGG + chr7_3:19696795-19696814 Msa1096060:CDS 35.0%
!! GAATACAAAGCATTGATGTC+AGG - chr7_3:19696885-19696904 None:intergenic 35.0%
TTCATAACATATCTCGCCAA+TGG - chr7_3:19697053-19697072 None:intergenic 35.0%
ATTCAGTGCTTCACTGTAAT+CGG - chr7_3:19697093-19697112 None:intergenic 35.0%
TCTGAAAGATCAAGAAGAAG+AGG + chr7_3:19697118-19697137 Msa1096060:CDS 35.0%
TTGGCTTCTGTTATCATCTT+CGG - chr7_3:19697180-19697199 None:intergenic 35.0%
TACATGGCTGAAAAGGTTAA+AGG + chr7_3:19697338-19697357 Msa1096060:CDS 35.0%
ACATGGCTGAAAAGGTTAAA+GGG + chr7_3:19697339-19697358 Msa1096060:CDS 35.0%
! GAAACTTCCAGTTGTGTTTT+CGG - chr7_3:19697400-19697419 None:intergenic 35.0%
CTCAACTTTCTTAAGGATGA+AGG + chr7_3:19697464-19697483 Msa1096060:CDS 35.0%
! TTTGAGACAGAATTTGAACC+GGG - chr7_3:19697500-19697519 None:intergenic 35.0%
TTTACAGGATTCAAACAGCT+TGG + chr7_3:19697570-19697589 Msa1096060:CDS 35.0%
CAAGCTTATAGGACATTTGT+TGG + chr7_3:19697653-19697672 Msa1096060:CDS 35.0%
! CTTATAGGACATTTGTTGGA+AGG + chr7_3:19697657-19697676 Msa1096060:CDS 35.0%
!!! TTACACTTTTTTGCATGCCT+TGG - chr7_3:19698018-19698037 None:intergenic 35.0%
GCCATAGACAAACTTGAGAT+TGG + chr7_3:19695007-19695026 Msa1096060:five_prime_UTR 40.0%
AATCTTCTGCAAGATCTGCA+AGG - chr7_3:19695251-19695270 None:intergenic 40.0%
!! CTTGTTCCTGATTTTCAGGA+AGG + chr7_3:19695300-19695319 Msa1096060:five_prime_UTR 40.0%
!! TTGTTCTTGGCTTTGATTGG+TGG + chr7_3:19695485-19695504 Msa1096060:five_prime_UTR 40.0%
!! TGTTCTTGGCTTTGATTGGT+GGG + chr7_3:19695486-19695505 Msa1096060:five_prime_UTR 40.0%
TGCAGCAAGACATATTGTGA+TGG + chr7_3:19695825-19695844 Msa1096060:CDS 40.0%
! AAGAAGATTCTGGCTGATCT+TGG + chr7_3:19695883-19695902 Msa1096060:CDS 40.0%
GAACATACAAAGTGAGAAGG+AGG + chr7_3:19695924-19695943 Msa1096060:CDS 40.0%
ATACAAAGTGAGAAGGAGGA+GGG + chr7_3:19695928-19695947 Msa1096060:CDS 40.0%
GGAGGATGATATAGATAAGG+AGG + chr7_3:19695969-19695988 Msa1096060:CDS 40.0%
TGATATAGATAAGGAGGACG+AGG + chr7_3:19695975-19695994 Msa1096060:CDS 40.0%
!! GGTGTTATTGAACAACGACT+TGG + chr7_3:19696024-19696043 Msa1096060:CDS 40.0%
!! ACAACGACTTGGTTTGATTC+AGG + chr7_3:19696035-19696054 Msa1096060:CDS 40.0%
GGCTTATAGTGTTCTTCAGA+CGG + chr7_3:19696221-19696240 Msa1096060:CDS 40.0%
GTTCAAAAGGTTGCCTATTC+TGG - chr7_3:19696287-19696306 None:intergenic 40.0%
GAGACATACTCAGGTTCAAA+AGG - chr7_3:19696300-19696319 None:intergenic 40.0%
ATCAATGACATGCTCTTCAG+TGG - chr7_3:19696424-19696443 None:intergenic 40.0%
! TAAGGCATCCCTTCTAACAA+TGG - chr7_3:19696538-19696557 None:intergenic 40.0%
! GAAAATGGAATGGGGTACTT+TGG + chr7_3:19696611-19696630 Msa1096060:CDS 40.0%
TTTATCTGGCAAGTGAAAGG+TGG + chr7_3:19696682-19696701 Msa1096060:CDS 40.0%
! AGTGACCAAATTTTCGGAGA+AGG + chr7_3:19696708-19696727 Msa1096060:CDS 40.0%
TTCGTATCAATTTCTCGGGT+TGG - chr7_3:19696827-19696846 None:intergenic 40.0%
CCAAGACTGAAGCAAATGAT+AGG - chr7_3:19697241-19697260 None:intergenic 40.0%
CCTATCATTTGCTTCAGTCT+TGG + chr7_3:19697238-19697257 Msa1096060:CDS 40.0%
! CCTTTTCAGCCATGTAATGT+AGG - chr7_3:19697334-19697353 None:intergenic 40.0%
CCTACATTACATGGCTGAAA+AGG + chr7_3:19697331-19697350 Msa1096060:CDS 40.0%
AGGTTAAAGGGTCTGAACTT+AGG + chr7_3:19697351-19697370 Msa1096060:CDS 40.0%
AATGGATCCGAAAACACAAC+TGG + chr7_3:19697390-19697409 Msa1096060:CDS 40.0%
TGAAATACGAGAGAGCTAGT+TGG + chr7_3:19697432-19697451 Msa1096060:CDS 40.0%
AAGTTACGAAGCTTCTACCT+CGG + chr7_3:19697536-19697555 Msa1096060:CDS 40.0%
GCACACTAAGTGAAACAAGA+AGG - chr7_3:19697863-19697882 None:intergenic 40.0%
CTTTGCAATGTTTGTGTCCA+AGG + chr7_3:19697998-19698017 Msa1096060:three_prime_UTR 40.0%
ATAAATCCAAGTAGGCCTTG+AGG - chr7_3:19698063-19698082 None:intergenic 40.0%
CAATGGCTGTTGAGGAATCT+AGG + chr7_3:19695761-19695780 Msa1096060:exon 45.0%
CATACAAAGTGAGAAGGAGG+AGG + chr7_3:19695927-19695946 Msa1096060:CDS 45.0%
TACAAAGTGAGAAGGAGGAG+GGG + chr7_3:19695929-19695948 Msa1096060:CDS 45.0%
TATAGATAAGGAGGACGAGG+TGG + chr7_3:19695978-19695997 Msa1096060:CDS 45.0%
GCGCATATTGATCGAGAAGT+TGG + chr7_3:19696149-19696168 Msa1096060:CDS 45.0%
TTCTTCAGACGGCTATGACA+CGG + chr7_3:19696232-19696251 Msa1096060:CDS 45.0%
GCAACCTGCTTATCCAGAAT+AGG + chr7_3:19696271-19696290 Msa1096060:CDS 45.0%
GTTGCCTATTCTGGATAAGC+AGG - chr7_3:19696278-19696297 None:intergenic 45.0%
GATCGAAACGAGACATACTC+AGG - chr7_3:19696309-19696328 None:intergenic 45.0%
AGCGAGGAAGATGTTGTTGA+TGG + chr7_3:19696330-19696349 Msa1096060:CDS 45.0%
GCGAGGAAGATGTTGTTGAT+GGG + chr7_3:19696331-19696350 Msa1096060:CDS 45.0%
TTTGCGATACACCTGAGATC+AGG - chr7_3:19696468-19696487 None:intergenic 45.0%
GGGTTTATCTGGCAAGTGAA+AGG + chr7_3:19696679-19696698 Msa1096060:CDS 45.0%
GTTCGCCTTCTCCGAAAATT+TGG - chr7_3:19696716-19696735 None:intergenic 45.0%
!! ATCAATTTCTCGGGTTGGTG+AGG - chr7_3:19696822-19696841 None:intergenic 45.0%
CAATGCTTTGTATTCGGACG+AGG + chr7_3:19696890-19696909 Msa1096060:CDS 45.0%
!! CACGAGGTTCTGAACAGATT+GGG + chr7_3:19696939-19696958 Msa1096060:CDS 45.0%
!! CCAACTAAAGGCGTTGTTGA+CGG - chr7_3:19697017-19697036 None:intergenic 45.0%
TCAACAACGCCTTTAGTTGG+TGG + chr7_3:19697017-19697036 Msa1096060:CDS 45.0%
TGTATCCCTCCACCAACTAA+AGG - chr7_3:19697029-19697048 None:intergenic 45.0%
CTGTTATCATCTTCGGTACC+CGG - chr7_3:19697173-19697192 None:intergenic 45.0%
GAAATCTACCAGGAGATGCT+TGG - chr7_3:19697199-19697218 None:intergenic 45.0%
TCCTGGTAGATTTCCCTCAA+TGG + chr7_3:19697205-19697224 Msa1096060:CDS 45.0%
AGTCTTGGAGAACAATCTCG+AGG + chr7_3:19697253-19697272 Msa1096060:CDS 45.0%
GGATCATATTCGGAGACGAA+TGG + chr7_3:19697372-19697391 Msa1096060:CDS 45.0%
TGTAAATATCCTCGAAGCCG+AGG - chr7_3:19697556-19697575 None:intergenic 45.0%
TCGGCTTCGAGGATATTTAC+AGG + chr7_3:19697555-19697574 Msa1096060:CDS 45.0%
TTCAGCTTCGCGAAGATTTG+CGG + chr7_3:19697606-19697625 Msa1096060:CDS 45.0%
TATATGCCTCAAGGCCTACT+TGG + chr7_3:19698054-19698073 Msa1096060:three_prime_UTR 45.0%
!! AATGAAAATAAATAAAATAA+TGG - chr7_3:19695053-19695072 None:intergenic 5.0%
AGAAGGAGGAGGGGAAGATA+GGG + chr7_3:19695938-19695957 Msa1096060:CDS 50.0%
GAAGATAGGGAGGGAAAAGG+AGG + chr7_3:19695951-19695970 Msa1096060:CDS 50.0%
CTGAGATCAGGAATCACAGC+CGG - chr7_3:19696456-19696475 None:intergenic 50.0%
GCTTTGTATTCGGACGAGGT+TGG + chr7_3:19696894-19696913 Msa1096060:CDS 50.0%
GTGGCATTCAAAGTGAACCG+AGG - chr7_3:19696922-19696941 None:intergenic 50.0%
GGTTCACTTTGAATGCCACG+AGG + chr7_3:19696923-19696942 Msa1096060:CDS 50.0%
CCAATCTGTTCAGAACCTCG+TGG - chr7_3:19696941-19696960 None:intergenic 50.0%
!! CCACGAGGTTCTGAACAGAT+TGG + chr7_3:19696938-19696957 Msa1096060:CDS 50.0%
CCGTCAACAACGCCTTTAGT+TGG + chr7_3:19697014-19697033 Msa1096060:CDS 50.0%
!! ACAACGCCTTTAGTTGGTGG+AGG + chr7_3:19697020-19697039 Msa1096060:CDS 50.0%
!! CAACGCCTTTAGTTGGTGGA+GGG + chr7_3:19697021-19697040 Msa1096060:CDS 50.0%
TGGTGGAGGGATACATCCAT+TGG + chr7_3:19697034-19697053 Msa1096060:CDS 50.0%
CGTGTCAGGTGACGATGAAA+TGG - chr7_3:19697147-19697166 None:intergenic 50.0%
AACAGAAGCCAAGCATCTCC+TGG + chr7_3:19697188-19697207 Msa1096060:CDS 50.0%
GCCATTGAGGGAAATCTACC+AGG - chr7_3:19697209-19697228 None:intergenic 50.0%
GTAGATTTCCCTCAATGGCG+CGG + chr7_3:19697210-19697229 Msa1096060:CDS 50.0%
GATGAAGGAATTCACGCTCC+CGG + chr7_3:19697479-19697498 Msa1096060:CDS 50.0%
TCTTCGCGAAGCTGAACATC+TGG - chr7_3:19697602-19697621 None:intergenic 50.0%
GAGAAGGAGGAGGGGAAGAT+AGG + chr7_3:19695937-19695956 Msa1096060:CDS 55.0%
GGGGAAGATAGGGAGGGAAA+AGG + chr7_3:19695948-19695967 Msa1096060:CDS 55.0%
! GAGGAGGAGGAAGAAGGTGT+TGG + chr7_3:19696003-19696022 Msa1096060:CDS 55.0%
TGTCTCGTTTCGATCGAGCG+AGG + chr7_3:19696314-19696333 Msa1096060:CDS 55.0%
CGGCTGTGATTCCTGATCTC+AGG + chr7_3:19696454-19696473 Msa1096060:CDS 55.0%
! TTCGGACGAGGTTGGTTCCT+CGG + chr7_3:19696902-19696921 Msa1096060:CDS 55.0%
ATCGTCACCTGACACGAGTC+CGG + chr7_3:19697151-19697170 Msa1096060:CDS 55.0%
AGGAATTGCCGCGCCATTGA+GGG - chr7_3:19697221-19697240 None:intergenic 55.0%
TAGGAATTGCCGCGCCATTG+AGG - chr7_3:19697222-19697241 None:intergenic 55.0%
AAGCTTCTACCTCGGCTTCG+AGG + chr7_3:19697544-19697563 Msa1096060:CDS 55.0%
AGGAGGAGGGGAAGATAGGG+AGG + chr7_3:19695941-19695960 Msa1096060:CDS 60.0%
GGAGGAGGGGAAGATAGGGA+GGG + chr7_3:19695942-19695961 Msa1096060:CDS 60.0%
TAAGGAGGACGAGGTGGACG+AGG + chr7_3:19695984-19696003 Msa1096060:CDS 60.0%
GTGGACGAGGAGGAGGAAGA+AGG + chr7_3:19695997-19696016 Msa1096060:CDS 60.0%
TCGTCACCTGACACGAGTCC+GGG + chr7_3:19697152-19697171 Msa1096060:CDS 60.0%
TCGGTACCCGGACTCGTGTC+AGG - chr7_3:19697161-19697180 None:intergenic 65.0%
GGAGGACGAGGTGGACGAGG+AGG + chr7_3:19695987-19696006 Msa1096060:CDS 70.0%
GGACGAGGTGGACGAGGAGG+AGG + chr7_3:19695990-19696009 Msa1096060:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 19694956 19698089 19694956 ID=Msa1096060;Name=Msa1096060
chr7_3 mRNA 19694956 19698089 19694956 ID=Msa1096060-mRNA-1;Parent=Msa1096060;Name=Msa1096060-mRNA-1;_AED=0.00;_eAED=0.00;_QI=681|1|1|1|1|1|2|293|677
chr7_3 exon 19694956 19695321 19694956 ID=Msa1096060-mRNA-1:exon:4255;Parent=Msa1096060-mRNA-1
chr7_3 exon 19695448 19698089 19695448 ID=Msa1096060-mRNA-1:exon:4256;Parent=Msa1096060-mRNA-1
chr7_3 five_prime_UTR 19694956 19695321 19694956 ID=Msa1096060-mRNA-1:five_prime_utr;Parent=Msa1096060-mRNA-1
chr7_3 five_prime_UTR 19695448 19695762 19695448 ID=Msa1096060-mRNA-1:five_prime_utr;Parent=Msa1096060-mRNA-1
chr7_3 CDS 19695763 19697796 19695763 ID=Msa1096060-mRNA-1:cds;Parent=Msa1096060-mRNA-1
chr7_3 three_prime_UTR 19697797 19698089 19697797 ID=Msa1096060-mRNA-1:three_prime_utr;Parent=Msa1096060-mRNA-1
Gene Sequence

>Msa1096060

ATGGCTGTTGAGGAATCTAGGCAAGTGATTCCTGAGTTAGAAAGAGAAGAGAATTTAATTGCTGCAGCAAGACATATTGTGATGGCTTTAGGGTCAAAGAACAGTCTTACAAGTGATGAAAAGAAGATTCTGGCTGATCTTGGATCAAAGTTGTCTTCCATGAACATACAAAGTGAGAAGGAGGAGGGGAAGATAGGGAGGGAAAAGGAGGATGATATAGATAAGGAGGACGAGGTGGACGAGGAGGAGGAAGAAGGTGTTGGTGTTATTGAACAACGACTTGGTTTGATTCAGGAGAAAATAATGAAATGGGAGGAAGATCAATCGATGATTTGGGATTTGGGACCTGAAGAAACGTCTGAGTATTTGAATGCAGCTAATGATGTGCGCATATTGATCGAGAAGTTGGAAGGTATGCATTTGAATAAAGAAGATCAAGAGTATAAGTTTTTGCAGAGGGCTTATAGTGTTCTTCAGACGGCTATGACACGGCTTGAAGAAGAGTTTAGCAACCTGCTTATCCAGAATAGGCAACCTTTTGAACCTGAGTATGTCTCGTTTCGATCGAGCGAGGAAGATGTTGTTGATGGGAATTCTTTTGTCTCTTTTGGTGATGATTCATTTGAGGAATCTCTTCGAAGAGATAGTGTCAGTCGAGCCACTGAAGAGCATGTCATTGATTTAGTTCATCCGGCTGTGATTCCTGATCTCAGGTGTATCGCAAACTTGCTTTTTGCTTCAAATTATGCTCAAGAATGTTCACAAGCTTATACCATTGTTAGAAGGGATGCCTTAGATGAGTGTTTGTTCATTCTTGAAATGGAAAGGCTAAGTATTGAAGATGTCTTGAAAATGGAATGGGGTACTTTGGTTTCAAAGATCAAAAGATGGATTTGGGCTTTGAAAATCTTTGTTAGGGTTTATCTGGCAAGTGAAAGGTGGCTTAGTGACCAAATTTTCGGAGAAGGCGAACCTGTTAGTCAAGCTTGTTTTGTCGATGCATCAAAAGCTTCAATTTTGCAGCTTCTGAATTTTGGTGAAGCTATGTCTATTGGTCCTCACCAACCCGAGAAATTGATACGAATTCTCGACATGTATGAAGTTCTTGCAGATCTTATGCCTGACATCAATGCTTTGTATTCGGACGAGGTTGGTTCCTCGGTTCACTTTGAATGCCACGAGGTTCTGAACAGATTGGGAGATTGTGTAAAGAAAACATTTCTTGAATTCAAAAATGCTGTTGATTTGAATCCGTCAACAACGCCTTTAGTTGGTGGAGGGATACATCCATTGGCGAGATATGTTATGAATTATCTTCGGACTCTTACCGATTACAGTGAAGCACTGAATCATCTTCTGAAAGATCAAGAAGAAGAGGATTCCATTTCATCGTCACCTGACACGAGTCCGGGTACCGAAGATGATAACAGAAGCCAAGCATCTCCTGGTAGATTTCCCTCAATGGCGCGGCAATTCCTATCATTTGCTTCAGTCTTGGAGAACAATCTCGAGGAGAAATCGAAGTTATACAAAGAGACTTCATTGCAGCACTTGTTCTTAATGAACAACCTACATTACATGGCTGAAAAGGTTAAAGGGTCTGAACTTAGGATCATATTCGGAGACGAATGGATCCGAAAACACAACTGGAAGTTTCAGCAGCACGCGATGAAATACGAGAGAGCTAGTTGGAGTTCCATTCTCAACTTTCTTAAGGATGAAGGAATTCACGCTCCCGGTTCAAATTCTGTCTCAAAAACTCTTCTAAAGGAGAAGTTACGAAGCTTCTACCTCGGCTTCGAGGATATTTACAGGATTCAAACAGCTTGGTCGATTCCAGATGTTCAGCTTCGCGAAGATTTGCGGATTTCTATATCGGTTAAAGTGATTCAAGCTTATAGGACATTTGTTGGAAGGAATAATAGTCATGTGAGTGATAAACATATTAGATACACTGCTGATGATTTAGAAAATTATCTTTTGGATTTCTTTGAAGGTTCTCAAAAGTTGTTGCAAAATCCTATTAGGAGATGA

Protein sequence

>Msa1096060

MAVEESRQVIPELEREENLIAAARHIVMALGSKNSLTSDEKKILADLGSKLSSMNIQSEKEEGKIGREKEDDIDKEDEVDEEEEEGVGVIEQRLGLIQEKIMKWEEDQSMIWDLGPEETSEYLNAANDVRILIEKLEGMHLNKEDQEYKFLQRAYSVLQTAMTRLEEEFSNLLIQNRQPFEPEYVSFRSSEEDVVDGNSFVSFGDDSFEESLRRDSVSRATEEHVIDLVHPAVIPDLRCIANLLFASNYAQECSQAYTIVRRDALDECLFILEMERLSIEDVLKMEWGTLVSKIKRWIWALKIFVRVYLASERWLSDQIFGEGEPVSQACFVDASKASILQLLNFGEAMSIGPHQPEKLIRILDMYEVLADLMPDINALYSDEVGSSVHFECHEVLNRLGDCVKKTFLEFKNAVDLNPSTTPLVGGGIHPLARYVMNYLRTLTDYSEALNHLLKDQEEEDSISSSPDTSPGTEDDNRSQASPGRFPSMARQFLSFASVLENNLEEKSKLYKETSLQHLFLMNNLHYMAEKVKGSELRIIFGDEWIRKHNWKFQQHAMKYERASWSSILNFLKDEGIHAPGSNSVSKTLLKEKLRSFYLGFEDIYRIQTAWSIPDVQLREDLRISISVKVIQAYRTFVGRNNSHVSDKHIRYTADDLENYLLDFFEGSQKLLQNPIRR*