AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0757960

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0757960 MtrunA17_Chr5g0404591 94.305 439 25 0 1 439 1 439 0.0 840
Msa0757960 MtrunA17_Chr8g0372911 60.134 449 167 5 1 438 1 448 2.93e-174 495
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0757960 AT3G50910.1 46.413 446 211 10 1 424 1 440 3.79e-104 317
Msa0757960 AT5G66480.1 40.045 442 237 6 1 424 1 432 3.73e-77 247

Find 181 sgRNAs with CRISPR-Local

Find 355 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCAATTGTTTGGGACTTTC+TGG -0.093296 5_2:+12998884 None:intergenic
TTAAGAGATGTTAGTTTATT+TGG 0.090026 5_2:-12994008 Msa0757960:three_prime_UTR
GAGATGAAAGGTGGAGTATT+TGG 0.166460 5_2:-12994370 Msa0757960:three_prime_UTR
TTTGTTCTGTGAACCTTATT+TGG 0.175235 5_2:+12998992 None:intergenic
CCAATTGTTTGGGACTTTCT+GGG 0.218319 5_2:+12998885 None:intergenic
GACACATTCTTCTATATATC+TGG 0.239573 5_2:+12994910 None:intergenic
AGGGTTTCATTGGTTTGATA+TGG 0.271555 5_2:-12993978 Msa0757960:three_prime_UTR
CTCTGTGCATTTATAGTTAT+GGG 0.283376 5_2:-12994753 Msa0757960:three_prime_UTR
TTTGATATAAGATGATAATT+AGG 0.290239 5_2:-12993895 Msa0757960:three_prime_UTR
CAAGAAGCAGAAATGGATTT+GGG 0.296967 5_2:-12995199 Msa0757960:CDS
GCTACAGCTATTAAGTTGTT+TGG 0.298307 5_2:-12994392 Msa0757960:three_prime_UTR
CCTTGTCACTCAGATACTTT+AGG 0.299947 5_2:-12995024 Msa0757960:three_prime_UTR
AGATGAAAGGTGGAGTATTT+GGG 0.304863 5_2:-12994369 Msa0757960:three_prime_UTR
GAAATCAATGGGAGAGTATT+AGG 0.317711 5_2:-12996820 Msa0757960:CDS
GCTCTGTGCATTTATAGTTA+TGG 0.323557 5_2:-12994754 Msa0757960:three_prime_UTR
CAGGATTTGTAAAACTGAAT+TGG 0.328520 5_2:+12997472 None:intergenic
GTTTCATTGGTTTGATAGTA+GGG 0.330494 5_2:-12993927 Msa0757960:three_prime_UTR
GGTTTCATTGGTTTGATAGT+AGG 0.331869 5_2:-12993928 Msa0757960:three_prime_UTR
ATTCAGAGTTAGTGAGTATA+GGG 0.334591 5_2:+12995047 None:intergenic
AGACGTGTCGAACACTAAAT+AGG 0.345067 5_2:+12994083 None:intergenic
CCCAGAAAGTCCCAAACAAT+TGG 0.346062 5_2:-12998885 Msa0757960:five_prime_UTR
TGAAACTCGTTGAATCTTGC+GGG 0.347300 5_2:+12997268 None:intergenic
AAGTCTTACCCACTGCTTCC+TGG 0.355664 5_2:+12996528 None:intergenic
ATATGGCAAGGGGACACTTA+TGG 0.362492 5_2:-12993949 Msa0757960:three_prime_UTR
TTAGCTGCATCATCATGTTC+AGG 0.371008 5_2:+12995078 None:intergenic
CTGAGACATCTCATGATTCA+TGG 0.374319 5_2:+12996556 None:intergenic
GCAAGAAGCAGAAATGGATT+TGG 0.374874 5_2:-12995200 Msa0757960:CDS
TTGATTTCTCATGTTGTTCA+AGG 0.376881 5_2:+12996835 None:intergenic
GTTTGATATGGGTCATCATA+TGG 0.377917 5_2:-12993966 Msa0757960:three_prime_UTR
TGGCCTCAGATGAACTCTTA+TGG 0.378070 5_2:+12997583 None:intergenic
GTTTGATAGTAGGGTTTCAT+TGG 0.383919 5_2:-12993918 Msa0757960:three_prime_UTR
TGGAGATAGTAGGGTTTCAT+TGG 0.386500 5_2:-12993988 Msa0757960:three_prime_UTR
CCAGAAAGTCCCAAACAATT+GGG 0.388451 5_2:-12998884 Msa0757960:five_prime_UTR
ATACTGCAATAGCATTTGAT+AGG 0.389425 5_2:-12997851 Msa0757960:CDS
GGGGACACTTATGGTTTCAT+TGG 0.390774 5_2:-12993940 Msa0757960:three_prime_UTR
TTAGTTTATTTGGAGATAGT+AGG 0.396018 5_2:-12993998 Msa0757960:three_prime_UTR
CCTTCACTGGAAGTCCTTGT+AGG 0.396131 5_2:-12994888 Msa0757960:three_prime_UTR
GAAAGTGCAAGAAGCAGAAA+TGG 0.397288 5_2:-12995206 Msa0757960:CDS
TTCTTACTTCGACCTCTGAT+TGG 0.403950 5_2:+12994316 None:intergenic
CGTTTGTGGTTTATGATGTA+TGG 0.405476 5_2:+12997621 None:intergenic
GTTGGAGCAGGTTTATCAAT+TGG 0.410351 5_2:+12997804 None:intergenic
CAATTGTTTGGGACTTTCTG+GGG 0.414635 5_2:+12998886 None:intergenic
TAGAATGATCTAAAGATTAG+AGG 0.417688 5_2:-12998948 Msa0757960:five_prime_UTR
AATGAGATTGAGTCTATTGA+TGG 0.418044 5_2:-12996888 Msa0757960:CDS
TCGAACACTAAATAGGAGTA+TGG 0.421658 5_2:+12994090 None:intergenic
GCATCATCATGTTCAGGAAC+TGG 0.429188 5_2:+12995084 None:intergenic
GGGTTTCATTGGTTTGATAT+GGG 0.429518 5_2:-12993977 Msa0757960:three_prime_UTR
AGGTTCATATCAAATACTAT+TGG 0.434224 5_2:-12996683 Msa0757960:CDS
GATTCAGAGTTAGTGAGTAT+AGG 0.443193 5_2:+12995046 None:intergenic
GGTTCATATCAAATACTATT+GGG 0.445118 5_2:-12996682 Msa0757960:CDS
AATGGATTCACCTCTTTAAG+TGG 0.446203 5_2:+12994671 None:intergenic
TTTGTGTTGTCTCTGTCAAA+TGG 0.451048 5_2:-12994613 Msa0757960:three_prime_UTR
TAGAAGAATGTGTCCTTCAC+TGG 0.457394 5_2:-12994901 Msa0757960:three_prime_UTR
AAATCCTGAACCTGTTGAAA+AGG 0.460125 5_2:-12997457 Msa0757960:CDS
CTTTGAGATTGCTCGACTCA+TGG 0.462701 5_2:-12996600 Msa0757960:CDS
ATAGAGAATAAGATGGTGAT+AGG 0.463527 5_2:-12998920 Msa0757960:five_prime_UTR
TTTGGTACAGGCATTGAAGT+TGG 0.464899 5_2:+12997786 None:intergenic
TAGTTTATTTGGAGATAGTA+GGG 0.466792 5_2:-12993997 Msa0757960:three_prime_UTR
AGCAGGTTTATCAATTGGCT+TGG 0.472599 5_2:+12997809 None:intergenic
TACAACAATGAAGTGGTAGA+AGG 0.472824 5_2:-12994487 Msa0757960:three_prime_UTR
TGAACAACATGAGAAATCAA+TGG 0.474764 5_2:-12996832 Msa0757960:CDS
CGGCATTCATCACCGCTCAA+TGG 0.481326 5_2:+12994653 None:intergenic
GAACAACATGAGAAATCAAT+GGG 0.481557 5_2:-12996831 Msa0757960:CDS
GACGAGGGCCACGACGTTTG+TGG 0.482940 5_2:+12997607 None:intergenic
GAAGATGGTGAATCTACAAC+TGG 0.483940 5_2:+12997657 None:intergenic
GACTGAGGTAGAGATGGAGA+TGG 0.489945 5_2:-12996645 Msa0757960:CDS
CTATTGGGAGAGCAACTGTT+AGG 0.492385 5_2:-12996667 Msa0757960:CDS
GCAAAACTCAAATTTGTAAG+AGG 0.493009 5_2:-12998812 Msa0757960:five_prime_UTR
GCAACAGCTGTAAGATCTGC+AGG 0.494398 5_2:+12996767 None:intergenic
GGAGTATGGAATTTGAAGCT+TGG 0.495997 5_2:+12994104 None:intergenic
GTTTCTCATCTCTACTAAGC+TGG 0.496423 5_2:+12994173 None:intergenic
ATCTGTGCTGCAAGTTCAGC+GGG 0.499928 5_2:-12997501 Msa0757960:CDS
ACAGAGCCAGACGCATCATA+TGG 0.500185 5_2:+12994770 None:intergenic
GCATGGTCTTATCTTCCTGC+TGG 0.505695 5_2:-12995135 Msa0757960:CDS
GTTTAGCCATATGATGCGTC+TGG 0.506332 5_2:-12994776 Msa0757960:three_prime_UTR
GACTGTGATCGCACTTGGTA+CGG 0.509214 5_2:-12995166 Msa0757960:CDS
TCAATGGGAGAGTATTAGGC+AGG 0.510480 5_2:-12996816 Msa0757960:CDS
ACAGGCATTGAAGTTGGAGC+AGG 0.510503 5_2:+12997792 None:intergenic
TTTGCAAAGCTACTACTCTC+TGG 0.512035 5_2:+12997360 None:intergenic
TAAGCTTGACCCACTTAAAG+AGG 0.512467 5_2:-12994681 Msa0757960:three_prime_UTR
TGAAATTCAGCAGTCCTGGC+GGG 0.513546 5_2:-12997200 Msa0757960:CDS
TGCCATAGCATCCTATGCAT+TGG 0.515664 5_2:-12994821 Msa0757960:three_prime_UTR
TGGTCTTATCTTCCTGCTGG+TGG 0.515856 5_2:-12995132 Msa0757960:CDS
GAGATGAGTTAACCACACTA+TGG 0.516115 5_2:+12994977 None:intergenic
CTCCAATGCATAGGATGCTA+TGG 0.518764 5_2:+12994819 None:intergenic
ACTGGAAGTTGTTTCACCTC+GGG 0.521881 5_2:+12997675 None:intergenic
CTAACGACTGTGATCGCACT+TGG 0.522171 5_2:-12995171 Msa0757960:CDS
AAGAAGCATATGAGAAGAGA+AGG 0.526196 5_2:+12998698 None:intergenic
GACTGCTGAATTTCATAGAT+AGG 0.526385 5_2:+12997208 None:intergenic
AATTGTTTGGGACTTTCTGG+GGG 0.527973 5_2:+12998887 None:intergenic
GTGAAACTCGTTGAATCTTG+CGG 0.531685 5_2:+12997267 None:intergenic
AATGAAGTGGTAGAAGGTTG+TGG 0.532768 5_2:-12994481 Msa0757960:three_prime_UTR
TTAAGTTGTTTGGAGATGAA+AGG 0.532861 5_2:-12994382 Msa0757960:three_prime_UTR
AGTTGTTTGGAGATGAAAGG+TGG 0.535136 5_2:-12994379 Msa0757960:three_prime_UTR
GCATCATAAAACTCCCCGCC+AGG 0.537987 5_2:+12997186 None:intergenic
GGTCGATATAGAGAATAAGA+TGG 0.538345 5_2:-12998927 Msa0757960:five_prime_UTR
GTCAACAGCTTTATGTTGCT+AGG 0.541027 5_2:-12996703 Msa0757960:CDS
TGTTAGGACTGAGGTAGAGA+TGG 0.541729 5_2:-12996651 Msa0757960:CDS
CAACATAAAGCTGTTGACAT+AGG 0.542420 5_2:+12996708 None:intergenic
GTAACAATGCTACCAACTGT+TGG 0.547002 5_2:-12994548 Msa0757960:three_prime_UTR
TCTATGAAATTCAGCAGTCC+TGG 0.547113 5_2:-12997204 Msa0757960:CDS
AGGCAGGGGTTGTATCTAGC+AGG 0.548446 5_2:-12996800 Msa0757960:CDS
TGGTTTATGATGTATGGTGA+AGG 0.553035 5_2:+12997627 None:intergenic
TTGAACAAAACGCAAACAGT+TGG 0.553988 5_2:-12998743 Msa0757960:five_prime_UTR
AACTGGAAGTTGTTTCACCT+CGG 0.554664 5_2:+12997674 None:intergenic
GCTTTGCAAATGATTTGCCC+AGG 0.559364 5_2:-12997347 Msa0757960:CDS
TCTTTCTGTAGAACTATCAT+CGG 0.559799 5_2:-12996960 Msa0757960:intron
AAAATAAGGTTCCTCGTCCT+CGG 0.562260 5_2:-12997722 Msa0757960:CDS
AGTTGGTAGCATTGTTACAA+TGG 0.564051 5_2:+12994553 None:intergenic
TGTTGAAAAGGAGTGTTTGA+AGG 0.564872 5_2:-12997445 Msa0757960:CDS
TAAAGTGCTGGCTTTAACCG+AGG 0.565232 5_2:+12997705 None:intergenic
GGTGAATATGATAGAAGCAA+TGG 0.572513 5_2:-12997411 Msa0757960:CDS
GACAATGAAATTCTCTAGTG+TGG 0.572939 5_2:+12994713 None:intergenic
TCTCTTGACGTATTCAATGC+AGG 0.573129 5_2:+12997315 None:intergenic
TCATATATCTTGATGCACCT+TGG 0.574081 5_2:-12994582 Msa0757960:three_prime_UTR
AACATGACAAGTAAAACAGT+TGG 0.578125 5_2:+12994796 None:intergenic
TCGGGTGTAGTATAAAGTGC+TGG 0.578523 5_2:+12997693 None:intergenic
TCTGGATTATGCACATACTC+AGG 0.578981 5_2:+12994928 None:intergenic
TGTTTGAAGGGTGTCTGTGG+TGG 0.579450 5_2:-12997432 Msa0757960:CDS
TGGGGTGTAAGTTTAGCAGA+AGG 0.580975 5_2:-12994350 Msa0757960:three_prime_UTR
TGGGTCAAGCTTACATTCAA+CGG 0.581266 5_2:+12994691 None:intergenic
GAGGACGACTCTCCACCAGC+AGG 0.582258 5_2:+12995120 None:intergenic
ATGGATTCACCTCTTTAAGT+GGG 0.583998 5_2:+12994672 None:intergenic
TCAGAGAAACCAGGAAGCAG+TGG 0.585491 5_2:-12996537 Msa0757960:CDS
AGATCTTACAGCTGTTGCTG+AGG 0.587621 5_2:-12996762 Msa0757960:CDS
ATATGGGTCATCATATGGCA+AGG 0.589128 5_2:-12993961 Msa0757960:three_prime_UTR
AATGCTATTGCAGTATATGT+CGG 0.591259 5_2:+12997858 None:intergenic
GATCTTACAGCTGTTGCTGA+GGG 0.591506 5_2:-12996761 Msa0757960:CDS
CAAATGAAAAGTACTAGAAG+AGG 0.594359 5_2:-12994144 Msa0757960:three_prime_UTR
GAAATTCAGCAGTCCTGGCG+GGG 0.595787 5_2:-12997199 Msa0757960:CDS
CAGAAAGTCCCAAACAATTG+GGG 0.597376 5_2:-12998883 Msa0757960:five_prime_UTR
GAGTGTTTGAAGGGTGTCTG+TGG 0.598262 5_2:-12997435 Msa0757960:CDS
GCTGGCTTTAACCGAGGACG+AGG 0.598445 5_2:+12997711 None:intergenic
TTATATTATATCACATCACA+TGG 0.601872 5_2:-12994292 Msa0757960:three_prime_UTR
CTTTGCAAATGATTTGCCCA+GGG 0.601901 5_2:-12997346 Msa0757960:CDS
CAACAGCATGATCCAACAGT+TGG 0.602588 5_2:+12994536 None:intergenic
GGTGAAGGAGGAAATGAAGA+TGG 0.603703 5_2:+12997642 None:intergenic
AACAGTTGGCTCCAATGCAT+AGG 0.605072 5_2:+12994810 None:intergenic
TATTCTCTACAACAATGAAG+TGG 0.606189 5_2:-12994494 Msa0757960:three_prime_UTR
ACTGACGTGGAAGAAAATGC+AGG 0.607052 5_2:-12997237 Msa0757960:CDS
TGTTGACATAGGTCTTCCAC+TGG 0.607331 5_2:+12996719 None:intergenic
AAACTCAAATTTGTAAGAGG+CGG 0.608085 5_2:-12998809 Msa0757960:five_prime_UTR
CAATGGGAGAGTATTAGGCA+GGG 0.613017 5_2:-12996815 Msa0757960:CDS
TTTATGATGTATGGTGAAGG+AGG 0.613364 5_2:+12997630 None:intergenic
GCTGAGTCTGCTCCAATCAG+AGG 0.616552 5_2:-12994328 Msa0757960:three_prime_UTR
AATGGGAGAGTATTAGGCAG+GGG 0.619951 5_2:-12996814 Msa0757960:CDS
TGGCATATTTCTCTACCATG+TGG 0.622066 5_2:+12994839 None:intergenic
AATGGAAGTGAACTGATGAA+TGG 0.624686 5_2:-12997393 Msa0757960:CDS
TATTGATGGAGATAGAGAAG+CGG 0.624918 5_2:-12996874 Msa0757960:CDS
GTTGAAAAGGAGTGTTTGAA+GGG 0.629295 5_2:-12997444 Msa0757960:CDS
TAGAGATGGCACGACGCGAG+AGG 0.630994 5_2:-12995233 Msa0757960:CDS
ATGAAATTCAGCAGTCCTGG+CGG 0.631034 5_2:-12997201 Msa0757960:CDS
TTGGTACGGCCACAGTAGCA+TGG 0.633372 5_2:-12995152 Msa0757960:CDS
TATGGGTCATCATATGGCAA+GGG 0.634469 5_2:-12993960 Msa0757960:three_prime_UTR
ATGAACTCTTATGGAGACGA+GGG 0.637716 5_2:+12997592 None:intergenic
TGTTACAATGGACAATGCCA+AGG 0.638618 5_2:+12994565 None:intergenic
CAGAGAAACCAGGAAGCAGT+GGG 0.639211 5_2:-12996536 Msa0757960:intron
ATCATAAACCACAAACGTCG+TGG 0.640724 5_2:-12997615 Msa0757960:CDS
ATGGGTCATCATATGGCAAG+GGG 0.642769 5_2:-12993959 Msa0757960:three_prime_UTR
GCAGCGGAATTCTGATCCAG+TGG 0.645249 5_2:-12996735 Msa0757960:CDS
AAGTTATACATGCCATAGTG+TGG 0.647000 5_2:-12994989 Msa0757960:three_prime_UTR
AACTGGATGATCATCTGCGG+AGG 0.647393 5_2:+12995101 None:intergenic
CCTAAAGTATCTGAGTGACA+AGG 0.647405 5_2:+12995024 None:intergenic
AAGATAAGACCATGCTACTG+TGG 0.649946 5_2:+12995143 None:intergenic
AAAGTCCCAAACAATTGGGG+AGG 0.650753 5_2:-12998880 Msa0757960:five_prime_UTR
TGAGATGTCTCAGAGAAACC+AGG 0.651421 5_2:-12996546 Msa0757960:CDS
GATTCATGGTCTCATAACAG+TGG 0.653039 5_2:+12996570 None:intergenic
TATCTGTGCTGCAAGTTCAG+CGG 0.655362 5_2:-12997502 Msa0757960:CDS
GATGAACTCTTATGGAGACG+AGG 0.655601 5_2:+12997591 None:intergenic
CTGACGTGGAAGAAAATGCA+GGG 0.661121 5_2:-12997236 Msa0757960:CDS
GATGAAAGGTGGAGTATTTG+GGG 0.664707 5_2:-12994368 Msa0757960:three_prime_UTR
CTGTTGCTGAGGGTGAGCAG+CGG 0.667573 5_2:-12996751 Msa0757960:CDS
AAGAAGCAGAAATGGATTTG+GGG 0.672341 5_2:-12995198 Msa0757960:CDS
AAATAAGGTTCACAGAACAA+AGG 0.672556 5_2:-12998990 Msa0757960:five_prime_UTR
TCTCCATAAGAGTTCATCTG+AGG 0.680121 5_2:-12997586 Msa0757960:CDS
CCTACAAGGACTTCCAGTGA+AGG 0.684981 5_2:+12994888 None:intergenic
AGGAACTGGATGATCATCTG+CGG 0.690792 5_2:+12995098 None:intergenic
TTTCACAAGTAACACTGACG+TGG 0.692204 5_2:-12997250 Msa0757960:CDS
GAGAGCAACTGTTAGGACTG+AGG 0.700724 5_2:-12996660 Msa0757960:CDS
AAAGAGGTGAATCCATTGAG+CGG 0.711570 5_2:-12994665 Msa0757960:three_prime_UTR
AGCACTTTATACTACACCCG+AGG 0.726065 5_2:-12997691 Msa0757960:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATAAAAAAAATATAT+TGG + chr5_2:12996983-12997002 None:intergenic 0.0%
!! AATAAAAAAAATATATTGGT+GGG + chr5_2:12996979-12996998 None:intergenic 10.0%
!! AAATAAAAAAAATATATTGG+TGG + chr5_2:12996980-12996999 None:intergenic 10.0%
!!! ATTCCTAGTTATATTTTAAA+TGG + chr5_2:12996825-12996844 None:intergenic 15.0%
!! TAAAAAGTTTCAAATAATGA+AGG + chr5_2:12997273-12997292 None:intergenic 15.0%
!!! GGTTAAAAATTTATCTTTTA+TGG - chr5_2:12998400-12998419 Msa0757960:intron 15.0%
!!! GTCTTAAATATGATTATTTT+CGG - chr5_2:12998796-12998815 Msa0757960:five_prime_UTR 15.0%
!! TTTGATATAAGATGATAATT+AGG - chr5_2:12998965-12998984 Msa0757960:five_prime_UTR 15.0%
!!! TTTTGTTCAAAGAGAAAATA+TGG + chr5_2:12994107-12994126 None:intergenic 20.0%
!!! TTTTCTTTTCAATATGTTGA+AGG - chr5_2:12994409-12994428 Msa0757960:three_prime_UTR 20.0%
!!! ATATTCCCAAAAACAATTTT+TGG + chr5_2:12994459-12994478 None:intergenic 20.0%
!! ATTGAATTGTTTATTCAAAC+AGG - chr5_2:12994896-12994915 Msa0757960:three_prime_UTR 20.0%
!! TTGAATTGTTTATTCAAACA+GGG - chr5_2:12994897-12994916 Msa0757960:three_prime_UTR 20.0%
!!! CATATATATGTTTTAGAATC+TGG - chr5_2:12996505-12996524 Msa0757960:intron 20.0%
!!! AAGCCATTTAAAATATAACT+AGG - chr5_2:12996819-12996838 Msa0757960:CDS 20.0%
!!! AAAAGACCTAAACTTTTATT+AGG - chr5_2:12996851-12996870 Msa0757960:CDS 20.0%
!!! TTTTAAATGAAGGTATATCT+TGG - chr5_2:12997002-12997021 Msa0757960:intron 20.0%
!!! TTTGAAACTTTTTATTGTAG+TGG - chr5_2:12997279-12997298 Msa0757960:CDS 20.0%
!!! AATGAGATTTAAAATTAAGC+AGG + chr5_2:12997587-12997606 None:intergenic 20.0%
!! AAAAAACCAAAAACGAAATT+CGG + chr5_2:12998230-12998249 None:intergenic 20.0%
!!! TGATTACCTATAAAGTTTTT+TGG - chr5_2:12998441-12998460 Msa0757960:intron 20.0%
!! TTATATTATATCACATCACA+TGG - chr5_2:12998568-12998587 Msa0757960:intron 20.0%
!!! TAAATATGATTATTTTCGGT+TGG - chr5_2:12998800-12998819 Msa0757960:five_prime_UTR 20.0%
!!! AAATATGATTATTTTCGGTT+GGG - chr5_2:12998801-12998820 Msa0757960:five_prime_UTR 20.0%
!!! CATCTCTTAAATGTTTTTTT+GGG + chr5_2:12998842-12998861 None:intergenic 20.0%
!!! ACATCTCTTAAATGTTTTTT+TGG + chr5_2:12998843-12998862 None:intergenic 20.0%
!!! TTAAGAGATGTTAGTTTATT+TGG - chr5_2:12998852-12998871 Msa0757960:five_prime_UTR 20.0%
!! GATCATTCTATTCTCTTTTA+GGG + chr5_2:12993902-12993921 None:intergenic 25.0%
!! AGATCATTCTATTCTCTTTT+AGG + chr5_2:12993903-12993922 None:intergenic 25.0%
! TAGAATGATCTAAAGATTAG+AGG - chr5_2:12993912-12993931 Msa0757960:three_prime_UTR 25.0%
!!! CTCTATTGTCTTTTTTATTG+CGG - chr5_2:12994252-12994271 Msa0757960:three_prime_UTR 25.0%
!! AAGTTGCTCAAAATTGTTTT+TGG - chr5_2:12994525-12994544 Msa0757960:three_prime_UTR 25.0%
! AATATACCACATAAGTACTA+TGG + chr5_2:12994859-12994878 None:intergenic 25.0%
! AGGTTCATATCAAATACTAT+TGG - chr5_2:12996177-12996196 Msa0757960:intron 25.0%
! GGTTCATATCAAATACTATT+GGG - chr5_2:12996178-12996197 Msa0757960:intron 25.0%
!!! TCGTTTTTCTACTTCTAATT+AGG - chr5_2:12996402-12996421 Msa0757960:intron 25.0%
! ACTTACTGTGCAATTAAATT+TGG - chr5_2:12996481-12996500 Msa0757960:intron 25.0%
!! ACCTAAACTTTTATTAGGAA+AGG - chr5_2:12996856-12996875 Msa0757960:CDS 25.0%
!! GACAATTGTCTAAATTTTTC+CGG + chr5_2:12996904-12996923 None:intergenic 25.0%
! TTGGTATATCTTAACTGTTA+AGG - chr5_2:12997021-12997040 Msa0757960:intron 25.0%
!!! ACTGTTAAGGTTTTAAAGAT+TGG - chr5_2:12997034-12997053 Msa0757960:intron 25.0%
! AACAGAATATCATGTAGTTA+GGG + chr5_2:12997478-12997497 None:intergenic 25.0%
! GTAATGCAATCTTTACAAAT+AGG + chr5_2:12997527-12997546 None:intergenic 25.0%
! AACAAAACATTCTTTAAGCT+GGG + chr5_2:12997556-12997575 None:intergenic 25.0%
!!! ATTTTTGTCTTGTTTAGAGA+TGG - chr5_2:12997613-12997632 Msa0757960:CDS 25.0%
!!! ACCTATAAAGTTTTTTGGAA+AGG - chr5_2:12998446-12998465 Msa0757960:intron 25.0%
! TTAGTTTATTTGGAGATAGT+AGG - chr5_2:12998862-12998881 Msa0757960:five_prime_UTR 25.0%
! TAGTTTATTTGGAGATAGTA+GGG - chr5_2:12998863-12998882 Msa0757960:five_prime_UTR 25.0%
ATAGAGAATAAGATGGTGAT+AGG - chr5_2:12993940-12993959 Msa0757960:three_prime_UTR 30.0%
!! TACAAATTTGAGTTTTGCGT+TGG + chr5_2:12994046-12994065 None:intergenic 30.0%
GCAAAACTCAAATTTGTAAG+AGG - chr5_2:12994048-12994067 Msa0757960:three_prime_UTR 30.0%
AAACTCAAATTTGTAAGAGG+CGG - chr5_2:12994051-12994070 Msa0757960:three_prime_UTR 30.0%
TTATGCTTTCTCATAGACTT+TGG - chr5_2:12994293-12994312 Msa0757960:three_prime_UTR 30.0%
!! ATTATTTTTCCCCTAGTTTC+TGG - chr5_2:12994355-12994374 Msa0757960:three_prime_UTR 30.0%
!! TTATTTTTCCCCTAGTTTCT+GGG - chr5_2:12994356-12994375 Msa0757960:three_prime_UTR 30.0%
! ACAAATTTTCCCAGAAACTA+GGG + chr5_2:12994368-12994387 None:intergenic 30.0%
! TACAAATTTTCCCAGAAACT+AGG + chr5_2:12994369-12994388 None:intergenic 30.0%
! CTTTTCAATATGTTGAAGGA+AGG - chr5_2:12994413-12994432 Msa0757960:three_prime_UTR 30.0%
! ATGGCACCAAAAATTGTTTT+TGG - chr5_2:12994450-12994469 Msa0757960:three_prime_UTR 30.0%
!! TGGCACCAAAAATTGTTTTT+GGG - chr5_2:12994451-12994470 Msa0757960:three_prime_UTR 30.0%
TTGGGAATATCTCTAGTTAT+TGG - chr5_2:12994469-12994488 Msa0757960:three_prime_UTR 30.0%
TGGGAATATCTCTAGTTATT+GGG - chr5_2:12994470-12994489 Msa0757960:three_prime_UTR 30.0%
!!! GCTTGCATAAGCTATTTTTA+TGG - chr5_2:12994597-12994616 Msa0757960:three_prime_UTR 30.0%
! TGTTTTCAACTTATTCTCAC+AGG - chr5_2:12994754-12994773 Msa0757960:three_prime_UTR 30.0%
AGATTGCTAAAAATTGTGCT+TGG - chr5_2:12994923-12994942 Msa0757960:three_prime_UTR 30.0%
AATGCTATTGCAGTATATGT+CGG + chr5_2:12995005-12995024 None:intergenic 30.0%
ATACTGCAATAGCATTTGAT+AGG - chr5_2:12995009-12995028 Msa0757960:three_prime_UTR 30.0%
CAGGATTTGTAAAACTGAAT+TGG + chr5_2:12995391-12995410 None:intergenic 30.0%
TCATAATGCAACTGTGATAA+TGG - chr5_2:12995790-12995809 Msa0757960:intron 30.0%
CATAATGCAACTGTGATAAT+GGG - chr5_2:12995791-12995810 Msa0757960:intron 30.0%
! ATAATGCAACTGTGATAATG+GGG - chr5_2:12995792-12995811 Msa0757960:intron 30.0%
TCTTTCTGTAGAACTATCAT+CGG - chr5_2:12995900-12995919 Msa0757960:intron 30.0%
AATGAGATTGAGTCTATTGA+TGG - chr5_2:12995972-12995991 Msa0757960:intron 30.0%
TTGATTTCTCATGTTGTTCA+AGG + chr5_2:12996028-12996047 None:intergenic 30.0%
TGAACAACATGAGAAATCAA+TGG - chr5_2:12996028-12996047 Msa0757960:intron 30.0%
GAACAACATGAGAAATCAAT+GGG - chr5_2:12996029-12996048 Msa0757960:intron 30.0%
TAAGACTTATGTGACATCTT+TGG - chr5_2:12996347-12996366 Msa0757960:intron 30.0%
AGGTAGATTTATTCAACTAG+TGG - chr5_2:12996422-12996441 Msa0757960:intron 30.0%
! TTATTCAACTAGTGGACATT+TGG - chr5_2:12996430-12996449 Msa0757960:intron 30.0%
GCCTTTCCTAATAAAAGTTT+AGG + chr5_2:12996860-12996879 None:intergenic 30.0%
! ATTGTCTAAATTTTTCCGGT+GGG + chr5_2:12996900-12996919 None:intergenic 30.0%
! AATTGTCTAAATTTTTCCGG+TGG + chr5_2:12996901-12996920 None:intergenic 30.0%
! AAAAAATATATTGGTGGGTG+AGG + chr5_2:12996974-12996993 None:intergenic 30.0%
GCTATGAATTCATACTATCT+TGG + chr5_2:12997098-12997117 None:intergenic 30.0%
!! TGGGAGTTGTTATTTGTTAT+TGG - chr5_2:12997199-12997218 Msa0757960:CDS 30.0%
AATGAAGGTTTCCATAACAA+CGG + chr5_2:12997258-12997277 None:intergenic 30.0%
ATCCTATAACACTTGGAAAA+TGG + chr5_2:12997313-12997332 None:intergenic 30.0%
TAGGAAAATCCTATAACACT+TGG + chr5_2:12997320-12997339 None:intergenic 30.0%
! TAACATCCTTTTTGTGAACA+TGG - chr5_2:12997379-12997398 Msa0757960:CDS 30.0%
GAACAGAATATCATGTAGTT+AGG + chr5_2:12997479-12997498 None:intergenic 30.0%
GAACAAAACATTCTTTAAGC+TGG + chr5_2:12997557-12997576 None:intergenic 30.0%
ATTCAGAGTTAGTGAGTATA+GGG + chr5_2:12997816-12997835 None:intergenic 30.0%
GACACATTCTTCTATATATC+TGG + chr5_2:12997953-12997972 None:intergenic 30.0%
AACATGACAAGTAAAACAGT+TGG + chr5_2:12998067-12998086 None:intergenic 30.0%
CTCTGTGCATTTATAGTTAT+GGG - chr5_2:12998107-12998126 Msa0757960:intron 30.0%
GCCTTTCCAAAAAACTTTAT+AGG + chr5_2:12998450-12998469 None:intergenic 30.0%
! TTAAGTTGTTTGGAGATGAA+AGG - chr5_2:12998478-12998497 Msa0757960:intron 30.0%
!! CAAATGAAAAGTACTAGAAG+AGG - chr5_2:12998716-12998735 Msa0757960:five_prime_UTR 30.0%
!! GTTTCATTGGTTTGATAGTA+GGG - chr5_2:12998933-12998952 Msa0757960:five_prime_UTR 30.0%
GGTCGATATAGAGAATAAGA+TGG - chr5_2:12993933-12993952 Msa0757960:three_prime_UTR 35.0%
! TTTTTCCTCCCCAATTGTTT+GGG + chr5_2:12993988-12994007 None:intergenic 35.0%
!!! TTTTTTCCTCCCCAATTGTT+TGG + chr5_2:12993989-12994008 None:intergenic 35.0%
TTGAACAAAACGCAAACAGT+TGG - chr5_2:12994117-12994136 Msa0757960:three_prime_UTR 35.0%
! AAGAAGCATATGAGAAGAGA+AGG + chr5_2:12994165-12994184 None:intergenic 35.0%
! CAAATTTTCCCAGAAACTAG+GGG + chr5_2:12994367-12994386 None:intergenic 35.0%
TTCAATATGTTGAAGGAAGG+AGG - chr5_2:12994416-12994435 Msa0757960:three_prime_UTR 35.0%
!! TTTTTGGTAGCTGCAGTATT+AGG - chr5_2:12994541-12994560 Msa0757960:three_prime_UTR 35.0%
TAGCTGCAGTATTAGGATTA+GGG - chr5_2:12994548-12994567 Msa0757960:three_prime_UTR 35.0%
CAGTATTAGGATTAGGGATT+TGG - chr5_2:12994554-12994573 Msa0757960:three_prime_UTR 35.0%
AGACTGTATGAGAAAGCTTA+TGG - chr5_2:12994705-12994724 Msa0757960:three_prime_UTR 35.0%
GCTTATCCATAGTACTTATG+TGG - chr5_2:12994850-12994869 Msa0757960:three_prime_UTR 35.0%
!! AGTTTTTGAGCATTTGGTAC+AGG + chr5_2:12995089-12995108 None:intergenic 35.0%
!! CTCTCAAGTTTTTGAGCATT+TGG + chr5_2:12995095-12995114 None:intergenic 35.0%
CAAATGCTCAAAAACTTGAG+AGG - chr5_2:12995093-12995112 Msa0757960:CDS 35.0%
TTTATGATGTATGGTGAAGG+AGG + chr5_2:12995233-12995252 None:intergenic 35.0%
TGGTTTATGATGTATGGTGA+AGG + chr5_2:12995236-12995255 None:intergenic 35.0%
CGTTTGTGGTTTATGATGTA+TGG + chr5_2:12995242-12995261 None:intergenic 35.0%
GCTGTCCAAAAAGAATGTTT+CGG - chr5_2:12995304-12995323 Msa0757960:intron 35.0%
CTGTCCAAAAAGAATGTTTC+GGG - chr5_2:12995305-12995324 Msa0757960:intron 35.0%
AAATCCTGAACCTGTTGAAA+AGG - chr5_2:12995403-12995422 Msa0757960:intron 35.0%
! TTCAAACACTCCTTTTCAAC+AGG + chr5_2:12995416-12995435 None:intergenic 35.0%
!! TGTTGAAAAGGAGTGTTTGA+AGG - chr5_2:12995415-12995434 Msa0757960:intron 35.0%
!! GTTGAAAAGGAGTGTTTGAA+GGG - chr5_2:12995416-12995435 Msa0757960:intron 35.0%
GGTGAATATGATAGAAGCAA+TGG - chr5_2:12995449-12995468 Msa0757960:intron 35.0%
AATGGAAGTGAACTGATGAA+TGG - chr5_2:12995467-12995486 Msa0757960:intron 35.0%
GACTGCTGAATTTCATAGAT+AGG + chr5_2:12995655-12995674 None:intergenic 35.0%
TGCATTTGCGACAGAAAAAT+TGG + chr5_2:12995729-12995748 None:intergenic 35.0%
TATTGATGGAGATAGAGAAG+CGG - chr5_2:12995986-12996005 Msa0757960:intron 35.0%
!! GAAATCAATGGGAGAGTATT+AGG - chr5_2:12996040-12996059 Msa0757960:intron 35.0%
CAACATAAAGCTGTTGACAT+AGG + chr5_2:12996155-12996174 None:intergenic 35.0%
AGTAAGTTAACTGTTACGAG+GGG + chr5_2:12996468-12996487 None:intergenic 35.0%
CAGTAAGTTAACTGTTACGA+GGG + chr5_2:12996469-12996488 None:intergenic 35.0%
ACAGTAAGTTAACTGTTACG+AGG + chr5_2:12996470-12996489 None:intergenic 35.0%
!! TCGGGGATAGTTGTTTTATT+AGG - chr5_2:12996591-12996610 Msa0757960:CDS 35.0%
! TGAGTGATGGTTAAGCTTTT+CGG + chr5_2:12996762-12996781 None:intergenic 35.0%
AATTACCATCTATGAAGCAC+AGG + chr5_2:12996931-12996950 None:intergenic 35.0%
TGTGCTTCATAGATGGTAAT+TGG - chr5_2:12996930-12996949 Msa0757960:CDS 35.0%
TGATATGTTCTGATGTCTCT+TGG - chr5_2:12997179-12997198 Msa0757960:CDS 35.0%
GATATGTTCTGATGTCTCTT+GGG - chr5_2:12997180-12997199 Msa0757960:CDS 35.0%
TTGGTTTATGCTGTAGTAAG+AGG - chr5_2:12997218-12997237 Msa0757960:CDS 35.0%
TAACACTTGGAAAATGGAGT+TGG + chr5_2:12997307-12997326 None:intergenic 35.0%
! CTCCATTTTCCAAGTGTTAT+AGG - chr5_2:12997308-12997327 Msa0757960:CDS 35.0%
! GGATTTTCCTAATAGCTAGA+TGG - chr5_2:12997329-12997348 Msa0757960:CDS 35.0%
CAGAATACCATCTAGCTATT+AGG + chr5_2:12997339-12997358 None:intergenic 35.0%
GTAATGCCATGTTCACAAAA+AGG + chr5_2:12997388-12997407 None:intergenic 35.0%
CATAGTTTAAGCTGGGAAAA+AGG + chr5_2:12997423-12997442 None:intergenic 35.0%
AACAAGGCATAGTTTAAGCT+GGG + chr5_2:12997430-12997449 None:intergenic 35.0%
AAACAAGGCATAGTTTAAGC+TGG + chr5_2:12997431-12997450 None:intergenic 35.0%
!! AACTATGCCTTGTTTCCTAA+TGG - chr5_2:12997436-12997455 Msa0757960:CDS 35.0%
AAAATCACAGCAAAGCCATT+AGG + chr5_2:12997454-12997473 None:intergenic 35.0%
! CAAGAAGCAGAAATGGATTT+GGG - chr5_2:12997661-12997680 Msa0757960:CDS 35.0%
! AAGAAGCAGAAATGGATTTG+GGG - chr5_2:12997662-12997681 Msa0757960:CDS 35.0%
GATTCAGAGTTAGTGAGTAT+AGG + chr5_2:12997817-12997836 None:intergenic 35.0%
AAGTTATACATGCCATAGTG+TGG - chr5_2:12997871-12997890 Msa0757960:exon 35.0%
!!! CCTTGTAGGCAGTTTTTTTA+CGG - chr5_2:12997986-12998005 Msa0757960:intron 35.0%
!!! CTTGTAGGCAGTTTTTTTAC+GGG - chr5_2:12997987-12998006 Msa0757960:intron 35.0%
GCTCTGTGCATTTATAGTTA+TGG - chr5_2:12998106-12998125 Msa0757960:intron 35.0%
GACAATGAAATTCTCTAGTG+TGG + chr5_2:12998150-12998169 None:intergenic 35.0%
ATGGATTCACCTCTTTAAGT+GGG + chr5_2:12998191-12998210 None:intergenic 35.0%
! AATGGATTCACCTCTTTAAG+TGG + chr5_2:12998192-12998211 None:intergenic 35.0%
! TGAATGCCGAATTTCGTTTT+TGG - chr5_2:12998221-12998240 Msa0757960:intron 35.0%
TTTGTGTTGTCTCTGTCAAA+TGG - chr5_2:12998247-12998266 Msa0757960:intron 35.0%
TCATATATCTTGATGCACCT+TGG - chr5_2:12998278-12998297 Msa0757960:intron 35.0%
!! AGTTGGTAGCATTGTTACAA+TGG + chr5_2:12998310-12998329 None:intergenic 35.0%
TACAACAATGAAGTGGTAGA+AGG - chr5_2:12998373-12998392 Msa0757960:intron 35.0%
! GCTACAGCTATTAAGTTGTT+TGG - chr5_2:12998468-12998487 Msa0757960:intron 35.0%
! AGATGAAAGGTGGAGTATTT+GGG - chr5_2:12998491-12998510 Msa0757960:intron 35.0%
TCGAACACTAAATAGGAGTA+TGG + chr5_2:12998773-12998792 None:intergenic 35.0%
!! AGGGTTTCATTGGTTTGATA+TGG - chr5_2:12998882-12998901 Msa0757960:five_prime_UTR 35.0%
!! GGGTTTCATTGGTTTGATAT+GGG - chr5_2:12998883-12998902 Msa0757960:five_prime_UTR 35.0%
GTTTGATATGGGTCATCATA+TGG - chr5_2:12998894-12998913 Msa0757960:five_prime_UTR 35.0%
!! GGTTTCATTGGTTTGATAGT+AGG - chr5_2:12998932-12998951 Msa0757960:five_prime_UTR 35.0%
! GTTTGATAGTAGGGTTTCAT+TGG - chr5_2:12998942-12998961 Msa0757960:five_prime_UTR 35.0%
! AATTGTTTGGGACTTTCTGG+GGG + chr5_2:12993976-12993995 None:intergenic 40.0%
! CAATTGTTTGGGACTTTCTG+GGG + chr5_2:12993977-12993996 None:intergenic 40.0%
! CCAATTGTTTGGGACTTTCT+GGG + chr5_2:12993978-12993997 None:intergenic 40.0%
CCAGAAAGTCCCAAACAATT+GGG - chr5_2:12993976-12993995 Msa0757960:three_prime_UTR 40.0%
CAGAAAGTCCCAAACAATTG+GGG - chr5_2:12993977-12993996 Msa0757960:three_prime_UTR 40.0%
AATAGAGAGAGAGAGAGAGA+GGG + chr5_2:12994239-12994258 None:intergenic 40.0%
TGCTTTCTCATAGACTTTGG+CGG - chr5_2:12994296-12994315 Msa0757960:three_prime_UTR 40.0%
GAAGGAGGAAAGATCAAACA+TGG - chr5_2:12994431-12994450 Msa0757960:three_prime_UTR 40.0%
GTAGCTGCAGTATTAGGATT+AGG - chr5_2:12994547-12994566 Msa0757960:three_prime_UTR 40.0%
! GCAGTTTTCATAAGCTGTCT+TGG + chr5_2:12994784-12994803 None:intergenic 40.0%
AGCAGGTTTATCAATTGGCT+TGG + chr5_2:12995054-12995073 None:intergenic 40.0%
GTTGGAGCAGGTTTATCAAT+TGG + chr5_2:12995059-12995078 None:intergenic 40.0%
!! TTTGGTACAGGCATTGAAGT+TGG + chr5_2:12995077-12995096 None:intergenic 40.0%
TGCTCCACCTGTGAAAAATA+AGG - chr5_2:12995124-12995143 Msa0757960:CDS 40.0%
!!! GGAACCTTATTTTTCACAGG+TGG + chr5_2:12995131-12995150 None:intergenic 40.0%
!!! CGAGGAACCTTATTTTTCAC+AGG + chr5_2:12995134-12995153 None:intergenic 40.0%
AAAATAAGGTTCCTCGTCCT+CGG - chr5_2:12995138-12995157 Msa0757960:CDS 40.0%
! AACTGGAAGTTGTTTCACCT+CGG + chr5_2:12995189-12995208 None:intergenic 40.0%
GAAGATGGTGAATCTACAAC+TGG + chr5_2:12995206-12995225 None:intergenic 40.0%
ATCATAAACCACAAACGTCG+TGG - chr5_2:12995245-12995264 Msa0757960:intron 40.0%
ATGAACTCTTATGGAGACGA+GGG + chr5_2:12995271-12995290 None:intergenic 40.0%
TCTCCATAAGAGTTCATCTG+AGG - chr5_2:12995274-12995293 Msa0757960:intron 40.0%
! ATTCTTTTTGGACAGCACAC+TGG + chr5_2:12995300-12995319 None:intergenic 40.0%
! CTCACCCGAAACATTCTTTT+TGG + chr5_2:12995312-12995331 None:intergenic 40.0%
! CAAAAAGAATGTTTCGGGTG+AGG - chr5_2:12995310-12995329 Msa0757960:intron 40.0%
TTTGCAAAGCTACTACTCTC+TGG + chr5_2:12995503-12995522 None:intergenic 40.0%
! CTTTGCAAATGATTTGCCCA+GGG - chr5_2:12995514-12995533 Msa0757960:intron 40.0%
TCTCTTGACGTATTCAATGC+AGG + chr5_2:12995548-12995567 None:intergenic 40.0%
TGAAACTCGTTGAATCTTGC+GGG + chr5_2:12995595-12995614 None:intergenic 40.0%
GTGAAACTCGTTGAATCTTG+CGG + chr5_2:12995596-12995615 None:intergenic 40.0%
TTTCACAAGTAACACTGACG+TGG - chr5_2:12995610-12995629 Msa0757960:intron 40.0%
TCTATGAAATTCAGCAGTCC+TGG - chr5_2:12995656-12995675 Msa0757960:intron 40.0%
!! GAGTTTTATGATGCTTGGGA+AGG - chr5_2:12995683-12995702 Msa0757960:intron 40.0%
CGACAGAAAAATTGGAGTGA+AGG + chr5_2:12995721-12995740 None:intergenic 40.0%
! GTCAACAGCTTTATGTTGCT+AGG - chr5_2:12996157-12996176 Msa0757960:intron 40.0%
GATTCATGGTCTCATAACAG+TGG + chr5_2:12996293-12996312 None:intergenic 40.0%
CTGAGACATCTCATGATTCA+TGG + chr5_2:12996307-12996326 None:intergenic 40.0%
AGTCAACACATACACTCTTG+TGG + chr5_2:12996536-12996555 None:intergenic 40.0%
AGATTGCTTCAGTCTGTGAA+TGG - chr5_2:12996656-12996675 Msa0757960:CDS 40.0%
GTCAGGCTATATATGAGTGA+TGG + chr5_2:12996775-12996794 None:intergenic 40.0%
CACTCATATATAGCCTGACA+TGG - chr5_2:12996776-12996795 Msa0757960:CDS 40.0%
CATATATAGCCTGACATGGA+AGG - chr5_2:12996780-12996799 Msa0757960:CDS 40.0%
CTATTCCTGTGCTTCATAGA+TGG - chr5_2:12996923-12996942 Msa0757960:CDS 40.0%
GCTTCATAGATGGTAATTGG+TGG - chr5_2:12996933-12996952 Msa0757960:CDS 40.0%
! AATATATTGGTGGGTGAGGA+GGG + chr5_2:12996970-12996989 None:intergenic 40.0%
! AAATATATTGGTGGGTGAGG+AGG + chr5_2:12996971-12996990 None:intergenic 40.0%
TTTCCATAACAACGGCATCT+GGG + chr5_2:12997250-12997269 None:intergenic 40.0%
AGCAAAGCCATTAGGAAACA+AGG + chr5_2:12997446-12997465 None:intergenic 40.0%
CATTCTTTAAGCTGGGAACA+AGG + chr5_2:12997549-12997568 None:intergenic 40.0%
! GAAAGTGCAAGAAGCAGAAA+TGG - chr5_2:12997654-12997673 Msa0757960:CDS 40.0%
! GCAAGAAGCAGAAATGGATT+TGG - chr5_2:12997660-12997679 Msa0757960:CDS 40.0%
AAGATAAGACCATGCTACTG+TGG + chr5_2:12997720-12997739 None:intergenic 40.0%
TTAGCTGCATCATCATGTTC+AGG + chr5_2:12997785-12997804 None:intergenic 40.0%
! CCTAAAGTATCTGAGTGACA+AGG + chr5_2:12997839-12997858 None:intergenic 40.0%
CCTTGTCACTCAGATACTTT+AGG - chr5_2:12997836-12997855 Msa0757960:CDS 40.0%
GAGATGAGTTAACCACACTA+TGG + chr5_2:12997886-12997905 None:intergenic 40.0%
TCTGGATTATGCACATACTC+AGG + chr5_2:12997935-12997954 None:intergenic 40.0%
TAGAAGAATGTGTCCTTCAC+TGG - chr5_2:12997959-12997978 Msa0757960:intron 40.0%
CCGTAAAAAAACTGCCTACA+AGG + chr5_2:12997989-12998008 None:intergenic 40.0%
TGGCATATTTCTCTACCATG+TGG + chr5_2:12998024-12998043 None:intergenic 40.0%
TGGGTCAAGCTTACATTCAA+CGG + chr5_2:12998172-12998191 None:intergenic 40.0%
TAAGCTTGACCCACTTAAAG+AGG - chr5_2:12998179-12998198 Msa0757960:intron 40.0%
AAAGAGGTGAATCCATTGAG+CGG - chr5_2:12998195-12998214 Msa0757960:intron 40.0%
TGTTACAATGGACAATGCCA+AGG + chr5_2:12998298-12998317 None:intergenic 40.0%
GTAACAATGCTACCAACTGT+TGG - chr5_2:12998312-12998331 Msa0757960:intron 40.0%
AATGAAGTGGTAGAAGGTTG+TGG - chr5_2:12998379-12998398 Msa0757960:intron 40.0%
AGTTGTTTGGAGATGAAAGG+TGG - chr5_2:12998481-12998500 Msa0757960:intron 40.0%
! GAGATGAAAGGTGGAGTATT+TGG - chr5_2:12998490-12998509 Msa0757960:intron 40.0%
! GATGAAAGGTGGAGTATTTG+GGG - chr5_2:12998492-12998511 Msa0757960:intron 40.0%
TTCTTACTTCGACCTCTGAT+TGG + chr5_2:12998547-12998566 None:intergenic 40.0%
GTTTCTCATCTCTACTAAGC+TGG + chr5_2:12998690-12998709 None:intergenic 40.0%
! GGAGTATGGAATTTGAAGCT+TGG + chr5_2:12998759-12998778 None:intergenic 40.0%
AGACGTGTCGAACACTAAAT+AGG + chr5_2:12998780-12998799 None:intergenic 40.0%
TGGAGATAGTAGGGTTTCAT+TGG - chr5_2:12998872-12998891 Msa0757960:five_prime_UTR 40.0%
ATATGGGTCATCATATGGCA+AGG - chr5_2:12998899-12998918 Msa0757960:five_prime_UTR 40.0%
TATGGGTCATCATATGGCAA+GGG - chr5_2:12998900-12998919 Msa0757960:five_prime_UTR 40.0%
CCCAGAAAGTCCCAAACAAT+TGG - chr5_2:12993975-12993994 Msa0757960:three_prime_UTR 45.0%
! CCCAATTGTTTGGGACTTTC+TGG + chr5_2:12993979-12993998 None:intergenic 45.0%
AAAGTCCCAAACAATTGGGG+AGG - chr5_2:12993980-12993999 Msa0757960:three_prime_UTR 45.0%
!! TCATTCGCTTTTCTCTCACC+AGG - chr5_2:12994198-12994217 Msa0757960:three_prime_UTR 45.0%
CAATAGAGAGAGAGAGAGAG+AGG + chr5_2:12994240-12994259 None:intergenic 45.0%
!! TAAAGTGCTGGCTTTAACCG+AGG + chr5_2:12995158-12995177 None:intergenic 45.0%
TCGGGTGTAGTATAAAGTGC+TGG + chr5_2:12995170-12995189 None:intergenic 45.0%
AGCACTTTATACTACACCCG+AGG - chr5_2:12995169-12995188 Msa0757960:CDS 45.0%
! ACTGGAAGTTGTTTCACCTC+GGG + chr5_2:12995188-12995207 None:intergenic 45.0%
GGTGAAGGAGGAAATGAAGA+TGG + chr5_2:12995221-12995240 None:intergenic 45.0%
GATGAACTCTTATGGAGACG+AGG + chr5_2:12995272-12995291 None:intergenic 45.0%
TGGCCTCAGATGAACTCTTA+TGG + chr5_2:12995280-12995299 None:intergenic 45.0%
TATCTGTGCTGCAAGTTCAG+CGG - chr5_2:12995358-12995377 Msa0757960:intron 45.0%
! CACTCCTTTTCAACAGGTTC+AGG + chr5_2:12995410-12995429 None:intergenic 45.0%
! GCTTTGCAAATGATTTGCCC+AGG - chr5_2:12995513-12995532 Msa0757960:intron 45.0%
!!! AATGCAGGAGCATTTTCCCT+GGG + chr5_2:12995533-12995552 None:intergenic 45.0%
ACTGACGTGGAAGAAAATGC+AGG - chr5_2:12995623-12995642 Msa0757960:intron 45.0%
CTGACGTGGAAGAAAATGCA+GGG - chr5_2:12995624-12995643 Msa0757960:intron 45.0%
ATGAAATTCAGCAGTCCTGG+CGG - chr5_2:12995659-12995678 Msa0757960:intron 45.0%
!! CGGGGAGTTTTATGATGCTT+GGG - chr5_2:12995679-12995698 Msa0757960:intron 45.0%
TGATGCTTGGGAAGGTAAAC+TGG - chr5_2:12995691-12995710 Msa0757960:intron 45.0%
! TTTTCTGTCGCAAATGCACG+TGG - chr5_2:12995731-12995750 Msa0757960:intron 45.0%
CAAATGCACGTGGCAATAGT+AGG - chr5_2:12995741-12995760 Msa0757960:intron 45.0%
!! TCAATGGGAGAGTATTAGGC+AGG - chr5_2:12996044-12996063 Msa0757960:intron 45.0%
!! CAATGGGAGAGTATTAGGCA+GGG - chr5_2:12996045-12996064 Msa0757960:intron 45.0%
!! AATGGGAGAGTATTAGGCAG+GGG - chr5_2:12996046-12996065 Msa0757960:intron 45.0%
AGATCTTACAGCTGTTGCTG+AGG - chr5_2:12996098-12996117 Msa0757960:intron 45.0%
GATCTTACAGCTGTTGCTGA+GGG - chr5_2:12996099-12996118 Msa0757960:intron 45.0%
TGTTGACATAGGTCTTCCAC+TGG + chr5_2:12996144-12996163 None:intergenic 45.0%
CTATTGGGAGAGCAACTGTT+AGG - chr5_2:12996193-12996212 Msa0757960:intron 45.0%
TGTTAGGACTGAGGTAGAGA+TGG - chr5_2:12996209-12996228 Msa0757960:intron 45.0%
!! CTTTGAGATTGCTCGACTCA+TGG - chr5_2:12996260-12996279 Msa0757960:intron 45.0%
TGAGATGTCTCAGAGAAACC+AGG - chr5_2:12996314-12996333 Msa0757960:intron 45.0%
AGTTCAGACTCGCATATCCA+TGG - chr5_2:12996614-12996633 Msa0757960:CDS 45.0%
GAAAATACCATGTCCTGCCA+TGG + chr5_2:12996634-12996653 None:intergenic 45.0%
ACATGTTGGGCACTCAAAAC+TGG - chr5_2:12996714-12996733 Msa0757960:CDS 45.0%
CATGTTGGGCACTCAAAACT+GGG - chr5_2:12996715-12996734 Msa0757960:CDS 45.0%
TTCCATAACAACGGCATCTG+GGG + chr5_2:12997249-12997268 None:intergenic 45.0%
GTTTCCATAACAACGGCATC+TGG + chr5_2:12997251-12997270 None:intergenic 45.0%
AGGAACTGGATGATCATCTG+CGG + chr5_2:12997765-12997784 None:intergenic 45.0%
GCATCATCATGTTCAGGAAC+TGG + chr5_2:12997779-12997798 None:intergenic 45.0%
TGCCATAGCATCCTATGCAT+TGG - chr5_2:12998039-12998058 Msa0757960:intron 45.0%
CTCCAATGCATAGGATGCTA+TGG + chr5_2:12998044-12998063 None:intergenic 45.0%
! AACAGTTGGCTCCAATGCAT+AGG + chr5_2:12998053-12998072 None:intergenic 45.0%
GTTTAGCCATATGATGCGTC+TGG - chr5_2:12998084-12998103 Msa0757960:intron 45.0%
CAACAGCATGATCCAACAGT+TGG + chr5_2:12998327-12998346 None:intergenic 45.0%
TGGGGTGTAAGTTTAGCAGA+AGG - chr5_2:12998510-12998529 Msa0757960:intron 45.0%
ATGGGTCATCATATGGCAAG+GGG - chr5_2:12998901-12998920 Msa0757960:five_prime_UTR 45.0%
ATATGGCAAGGGGACACTTA+TGG - chr5_2:12998911-12998930 Msa0757960:five_prime_UTR 45.0%
GGGGACACTTATGGTTTCAT+TGG - chr5_2:12998920-12998939 Msa0757960:five_prime_UTR 45.0%
!!! TTTTATTTTTTTTTAAATGA+AGG - chr5_2:12996992-12997011 Msa0757960:intron 5.0%
GGGAGAGAGAGGAAAAAACC+TGG + chr5_2:12994219-12994238 None:intergenic 50.0%
!! ACAGGCATTGAAGTTGGAGC+AGG + chr5_2:12995071-12995090 None:intergenic 50.0%
ATCTGTGCTGCAAGTTCAGC+GGG - chr5_2:12995359-12995378 Msa0757960:intron 50.0%
!! GAGTGTTTGAAGGGTGTCTG+TGG - chr5_2:12995425-12995444 Msa0757960:intron 50.0%
!! TGTTTGAAGGGTGTCTGTGG+TGG - chr5_2:12995428-12995447 Msa0757960:intron 50.0%
!!! CAATGCAGGAGCATTTTCCC+TGG + chr5_2:12995534-12995553 None:intergenic 50.0%
TGAAATTCAGCAGTCCTGGC+GGG - chr5_2:12995660-12995679 Msa0757960:intron 50.0%
!! GCGGGGAGTTTTATGATGCT+TGG - chr5_2:12995678-12995697 Msa0757960:intron 50.0%
GCAACAGCTGTAAGATCTGC+AGG + chr5_2:12996096-12996115 None:intergenic 50.0%
GAGAGCAACTGTTAGGACTG+AGG - chr5_2:12996200-12996219 Msa0757960:intron 50.0%
GACTGAGGTAGAGATGGAGA+TGG - chr5_2:12996215-12996234 Msa0757960:intron 50.0%
TCAGAGAAACCAGGAAGCAG+TGG - chr5_2:12996323-12996342 Msa0757960:intron 50.0%
CAGAGAAACCAGGAAGCAGT+GGG - chr5_2:12996324-12996343 Msa0757960:intron 50.0%
AAGTCTTACCCACTGCTTCC+TGG + chr5_2:12996335-12996354 None:intergenic 50.0%
GTCAATAGCCGTAGCTGTGT+CGG - chr5_2:12996572-12996591 Msa0757960:CDS 50.0%
TCAATAGCCGTAGCTGTGTC+GGG - chr5_2:12996573-12996592 Msa0757960:CDS 50.0%
AACTATCCCCGACACAGCTA+CGG + chr5_2:12996583-12996602 None:intergenic 50.0%
AACACCCGACTGACACATGT+TGG - chr5_2:12996700-12996719 Msa0757960:CDS 50.0%
ACACCCGACTGACACATGTT+GGG - chr5_2:12996701-12996720 Msa0757960:CDS 50.0%
AGTGCCCAACATGTGTCAGT+CGG + chr5_2:12996708-12996727 None:intergenic 50.0%
CAGTTGCATCCTTCCATGTC+AGG + chr5_2:12996792-12996811 None:intergenic 50.0%
GTGGGTCACAACGCATAAGA+CGG + chr5_2:12996882-12996901 None:intergenic 50.0%
TCTTATGCGTTGTGACCCAC+CGG - chr5_2:12996882-12996901 Msa0757960:CDS 50.0%
AACCCCAGATGCCGTTGTTA+TGG - chr5_2:12997244-12997263 Msa0757960:CDS 50.0%
CTAACGACTGTGATCGCACT+TGG - chr5_2:12997689-12997708 Msa0757960:CDS 50.0%
GACTGTGATCGCACTTGGTA+CGG - chr5_2:12997694-12997713 Msa0757960:CDS 50.0%
!! GCATGGTCTTATCTTCCTGC+TGG - chr5_2:12997725-12997744 Msa0757960:CDS 50.0%
!! TGGTCTTATCTTCCTGCTGG+TGG - chr5_2:12997728-12997747 Msa0757960:CDS 50.0%
AACTGGATGATCATCTGCGG+AGG + chr5_2:12997762-12997781 None:intergenic 50.0%
CCTACAAGGACTTCCAGTGA+AGG + chr5_2:12997975-12997994 None:intergenic 50.0%
CCTTCACTGGAAGTCCTTGT+AGG - chr5_2:12997972-12997991 Msa0757960:intron 50.0%
!!! CGGGAGTGTTTTGAACCACA+TGG - chr5_2:12998006-12998025 Msa0757960:intron 50.0%
ACAGAGCCAGACGCATCATA+TGG + chr5_2:12998093-12998112 None:intergenic 50.0%
! GTTTGGGACTTTCTGGGGGT+GGG + chr5_2:12993972-12993991 None:intergenic 55.0%
! TGTTTGGGACTTTCTGGGGG+TGG + chr5_2:12993973-12993992 None:intergenic 55.0%
AGAGAGAGAGAGGGAGAGAG+AGG + chr5_2:12994230-12994249 None:intergenic 55.0%
GAAATTCAGCAGTCCTGGCG+GGG - chr5_2:12995661-12995680 Msa0757960:intron 55.0%
GCATCATAAAACTCCCCGCC+AGG + chr5_2:12995677-12995696 None:intergenic 55.0%
AGGCAGGGGTTGTATCTAGC+AGG - chr5_2:12996060-12996079 Msa0757960:intron 55.0%
GCAGCGGAATTCTGATCCAG+TGG - chr5_2:12996125-12996144 Msa0757960:intron 55.0%
CAATAGCCGTAGCTGTGTCG+GGG - chr5_2:12996574-12996593 Msa0757960:CDS 55.0%
CAGACTCGCATATCCATGGC+AGG - chr5_2:12996618-12996637 Msa0757960:CDS 55.0%
CGCATATCCATGGCAGGACA+TGG - chr5_2:12996624-12996643 Msa0757960:CDS 55.0%
GTGCCCAACATGTGTCAGTC+GGG + chr5_2:12996707-12996726 None:intergenic 55.0%
TTGGTACGGCCACAGTAGCA+TGG - chr5_2:12997708-12997727 Msa0757960:CDS 55.0%
CGGCATTCATCACCGCTCAA+TGG + chr5_2:12998210-12998229 None:intergenic 55.0%
GCTGAGTCTGCTCCAATCAG+AGG - chr5_2:12998532-12998551 Msa0757960:intron 55.0%
!! GCTGGCTTTAACCGAGGACG+AGG + chr5_2:12995152-12995171 None:intergenic 60.0%
CTGTTGCTGAGGGTGAGCAG+CGG - chr5_2:12996109-12996128 Msa0757960:intron 60.0%
TAGAGATGGCACGACGCGAG+AGG - chr5_2:12997627-12997646 Msa0757960:CDS 60.0%
! GGACTTTCTGGGGGTGGGTG+GGG + chr5_2:12993967-12993986 None:intergenic 65.0%
! GGGACTTTCTGGGGGTGGGT+GGG + chr5_2:12993968-12993987 None:intergenic 65.0%
! TGGGACTTTCTGGGGGTGGG+TGG + chr5_2:12993969-12993988 None:intergenic 65.0%
GACGAGGGCCACGACGTTTG+TGG + chr5_2:12995256-12995275 None:intergenic 65.0%
GAGGACGACTCTCCACCAGC+AGG + chr5_2:12997743-12997762 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 12993871 12999011 12993871 ID=Msa0757960;Name=Msa0757960
chr5_2 mRNA 12993871 12999011 12993871 ID=Msa0757960-mRNA-1;Parent=Msa0757960;Name=Msa0757960-mRNA-1;_AED=0.02;_eAED=0.02;_QI=430|1|1|1|0.33|0.5|4|1203|439
chr5_2 exon 12993871 12995252 12993871 ID=Msa0757960-mRNA-1:exon:5860;Parent=Msa0757960-mRNA-1
chr5_2 exon 12996537 12996971 12996537 ID=Msa0757960-mRNA-1:exon:5859;Parent=Msa0757960-mRNA-1
chr5_2 exon 12997178 12997964 12997178 ID=Msa0757960-mRNA-1:exon:5858;Parent=Msa0757960-mRNA-1
chr5_2 exon 12998663 12999011 12998663 ID=Msa0757960-mRNA-1:exon:5857;Parent=Msa0757960-mRNA-1
chr5_2 five_prime_UTR 12998663 12999011 12998663 ID=Msa0757960-mRNA-1:five_prime_utr;Parent=Msa0757960-mRNA-1
chr5_2 five_prime_UTR 12997884 12997964 12997884 ID=Msa0757960-mRNA-1:five_prime_utr;Parent=Msa0757960-mRNA-1
chr5_2 CDS 12997178 12997883 12997178 ID=Msa0757960-mRNA-1:cds;Parent=Msa0757960-mRNA-1
chr5_2 CDS 12996537 12996971 12996537 ID=Msa0757960-mRNA-1:cds;Parent=Msa0757960-mRNA-1
chr5_2 CDS 12995074 12995252 12995074 ID=Msa0757960-mRNA-1:cds;Parent=Msa0757960-mRNA-1
chr5_2 three_prime_UTR 12993871 12995073 12993871 ID=Msa0757960-mRNA-1:three_prime_utr;Parent=Msa0757960-mRNA-1
Gene Sequence

>Msa0757960

ATGCCGACATATACTGCAATAGCATTTGATAGGTTTTTAGAGACTAGAGCTTCCAAGCCAATTGATAAACCTGCTCCAACTTCAATGCCTGTACCAAATGCTCAAAAACTTGAGAGGACTACTAGTGCTCCACCTGTGAAAAATAAGGTTCCTCGTCCTCGGTTAAAGCCAGCACTTTATACTACACCCGAGGTGAAACAACTTCCAGTTGTAGATTCACCATCTTCATTTCCTCCTTCACCATACATCATAAACCACAAACGTCGTGGCCCTCGTCTCCATAAGAGTTCATCTGAGGCCAGTGTGCTGTCCAAAAAGAATGTTTCGGGTGAGGAAAAAGTTGATGATAAGAGCTTTGATATCTGTGCTGCAAGTTCAGCGGGTGATCTCCAATTCAGTTTTACAAATCCTGAACCTGTTGAAAAGGAGTGTTTGAAGGGTGTCTGTGGTGGTGAATATGATAGAAGCAATGGAAGTGAACTGATGAATGGACACAAAGAACCAGAGAGTAGTAGCTTTGCAAATGATTTGCCCAGGGAAAATGCTCCTGCATTGAATACGTCAAGAGATACAGATATTGAAGACTTCTTTGACCCGCAAGATTCAACGAGTTTCACAAGTAACACTGACGTGGAAGAAAATGCAGGGACAGACCTATCTATGAAATTCAGCAGTCCTGGCGGGGAGTTTTATGATGCTTGGGAAGAACTATCATCGGAAGCTGCTACTCAAAATTCTGCATCTGATGTTGAAGCTGAATTGCGTGAAATGAGATTGAGTCTATTGATGGAGATAGAGAAGCGGAAGCAAGCTGAAGAATCCTTGAACAACATGAGAAATCAATGGGAGAGTATTAGGCAGGGGTTGTATCTAGCAGGAATCGTTTTGCCTGCAGATCTTACAGCTGTTGCTGAGGGTGAGCAGCGGAATTCTGATCCAGTGGAAGACCTATGTCAACAGCTTTATGTTGCTAGGTTCATATCAAATACTATTGGGAGAGCAACTGTTAGGACTGAGGTAGAGATGGAGATGGAAACTCAACTAGAGTCAAAGAACTTTGAGATTGCTCGACTCATGGAACGTCTCCACTGTTATGAGACCATGAATCATGAGATGTCTCAGAGAAACCAGGAAGCAGTGGAGATGGCACGACGCGAGAGGCAAAGAAAGTGCAAGAAGCAGAAATGGATTTGGGGTTCACTAACGACTGTGATCGCACTTGGTACGGCCACAGTAGCATGGTCTTATCTTCCTGCTGGTGGAGAGTCGTCCTCCGCAGATGATCATCCAGTTCCTGAACATGATGATGCAGCTAAATAA
Protein sequence

>Msa0757960

MPTYTAIAFDRFLETRASKPIDKPAPTSMPVPNAQKLERTTSAPPVKNKVPRPRLKPALYTTPEVKQLPVVDSPSSFPPSPYIINHKRRGPRLHKSSSEASVLSKKNVSGEEKVDDKSFDICAASSAGDLQFSFTNPEPVEKECLKGVCGGEYDRSNGSELMNGHKEPESSSFANDLPRENAPALNTSRDTDIEDFFDPQDSTSFTSNTDVEENAGTDLSMKFSSPGGEFYDAWEELSSEAATQNSASDVEAELREMRLSLLMEIEKRKQAEESLNNMRNQWESIRQGLYLAGIVLPADLTAVAEGEQRNSDPVEDLCQQLYVARFISNTIGRATVRTEVEMEMETQLESKNFEIARLMERLHCYETMNHEMSQRNQEAVEMARRERQRKCKKQKWIWGSLTTVIALGTATVAWSYLPAGGESSSADDHPVPEHDDAAK*