Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1276390 | sp|O04012|AB19B_PRUPE | 54.808 | 208 | 92 | 1 | 1 | 206 | 1 | 208 | 1.00e-77 | 234 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1276390 | G7L6U7 | 96.135 | 207 | 8 | 0 | 1 | 207 | 1 | 207 | 3.01e-141 | 402 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0212490 | Msa1276390 | 0.813494 | 2.487559e-51 | -8.615850e-47 |
| Msa1276390 | Msa1323030 | 0.824318 | 8.612871e-54 | -8.615850e-47 |
| Msa0252880 | Msa1276390 | 0.802526 | 5.379663e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1276390 | MtrunA17_Chr8g0343921 | 96.135 | 207 | 8 | 0 | 1 | 207 | 1 | 207 | 5.79e-145 | 402 |
| Msa1276390 | MtrunA17_Chr8g0343911 | 59.330 | 209 | 82 | 2 | 1 | 207 | 1 | 208 | 1.45e-82 | 244 |
| Msa1276390 | MtrunA17_Chr8g0343934 | 56.938 | 209 | 86 | 3 | 1 | 207 | 3 | 209 | 6.15e-78 | 232 |
| Msa1276390 | MtrunA17_Chr8g0343961 | 57.282 | 206 | 84 | 3 | 4 | 207 | 6 | 209 | 2.07e-77 | 231 |
| Msa1276390 | MtrunA17_Chr8g0343954 | 58.031 | 193 | 77 | 3 | 17 | 207 | 19 | 209 | 1.24e-73 | 221 |
| Msa1276390 | MtrunA17_Chr2g0300561 | 52.153 | 209 | 96 | 2 | 1 | 207 | 4 | 210 | 3.23e-73 | 220 |
| Msa1276390 | MtrunA17_Chr2g0300581 | 50.718 | 209 | 99 | 2 | 1 | 207 | 4 | 210 | 5.70e-73 | 219 |
| Msa1276390 | MtrunA17_Chr2g0300591 | 50.718 | 209 | 99 | 2 | 1 | 207 | 4 | 210 | 2.11e-72 | 218 |
| Msa1276390 | MtrunA17_Chr2g0301611 | 54.545 | 209 | 91 | 3 | 1 | 207 | 3 | 209 | 2.90e-72 | 218 |
| Msa1276390 | MtrunA17_Chr2g0302171 | 54.854 | 206 | 89 | 3 | 4 | 207 | 6 | 209 | 9.76e-71 | 214 |
| Msa1276390 | MtrunA17_Chr3g0084531 | 54.067 | 209 | 92 | 3 | 1 | 207 | 3 | 209 | 5.48e-69 | 209 |
| Msa1276390 | MtrunA17_Chr2g0297231 | 52.913 | 206 | 93 | 3 | 1 | 204 | 3 | 206 | 8.49e-69 | 209 |
| Msa1276390 | MtrunA17_Chr2g0297241 | 52.885 | 208 | 94 | 3 | 1 | 206 | 3 | 208 | 2.07e-68 | 208 |
| Msa1276390 | MtrunA17_Chr2g0313961 | 53.171 | 205 | 92 | 3 | 4 | 206 | 6 | 208 | 2.88e-68 | 207 |
| Msa1276390 | MtrunA17_Chr8g0344051 | 50.725 | 207 | 98 | 3 | 4 | 207 | 7 | 212 | 4.38e-66 | 202 |
| Msa1276390 | MtrunA17_Chr4g0003361 | 52.913 | 206 | 90 | 5 | 4 | 207 | 5 | 205 | 1.63e-65 | 201 |
| Msa1276390 | MtrunA17_Chr3g0084511 | 52.913 | 206 | 92 | 4 | 4 | 207 | 6 | 208 | 2.41e-65 | 200 |
| Msa1276390 | MtrunA17_Chr3g0084521 | 52.427 | 206 | 93 | 4 | 4 | 207 | 6 | 208 | 2.71e-64 | 197 |
| Msa1276390 | MtrunA17_Chr5g0411961 | 50.239 | 209 | 100 | 3 | 1 | 207 | 3 | 209 | 3.84e-64 | 197 |
| Msa1276390 | MtrunA17_Chr2g0302541 | 53.333 | 195 | 87 | 3 | 15 | 207 | 17 | 209 | 7.19e-62 | 191 |
| Msa1276390 | MtrunA17_Chr4g0012651 | 53.093 | 194 | 87 | 3 | 16 | 207 | 18 | 209 | 7.35e-62 | 191 |
| Msa1276390 | MtrunA17_Chr7g0217811 | 52.577 | 194 | 88 | 3 | 16 | 207 | 18 | 209 | 2.43e-60 | 187 |
| Msa1276390 | MtrunA17_Chr8g0344041 | 49.738 | 191 | 93 | 2 | 19 | 207 | 24 | 213 | 2.19e-58 | 182 |
| Msa1276390 | MtrunA17_Chr3g0115141 | 50.267 | 187 | 89 | 4 | 22 | 207 | 27 | 210 | 3.92e-58 | 182 |
| Msa1276390 | MtrunA17_Chr8g0344031 | 49.038 | 208 | 102 | 3 | 2 | 207 | 6 | 211 | 6.04e-58 | 181 |
| Msa1276390 | MtrunA17_Chr2g0286171 | 47.619 | 210 | 103 | 5 | 2 | 207 | 6 | 212 | 1.17e-57 | 181 |
| Msa1276390 | MtrunA17_Chr8g0344021 | 45.411 | 207 | 109 | 3 | 4 | 207 | 7 | 212 | 6.61e-57 | 179 |
| Msa1276390 | MtrunA17_Chr3g0084551 | 46.798 | 203 | 98 | 4 | 1 | 201 | 3 | 197 | 1.88e-53 | 171 |
| Msa1276390 | MtrunA17_Chr1g0178711 | 36.458 | 192 | 108 | 5 | 20 | 200 | 30 | 218 | 2.64e-35 | 124 |
| Msa1276390 | MtrunA17_Chr1g0193421 | 37.297 | 185 | 110 | 4 | 22 | 201 | 30 | 213 | 1.48e-32 | 117 |
| Msa1276390 | MtrunA17_Chr1g0210761 | 34.211 | 190 | 116 | 4 | 20 | 206 | 27 | 210 | 2.14e-30 | 111 |
| Msa1276390 | MtrunA17_Chr2g0292901 | 35.638 | 188 | 112 | 4 | 22 | 203 | 29 | 213 | 1.16e-29 | 109 |
| Msa1276390 | MtrunA17_Chr1g0156131 | 35.468 | 203 | 118 | 5 | 8 | 203 | 13 | 209 | 3.30e-29 | 108 |
| Msa1276390 | MtrunA17_Chr2g0292831 | 34.555 | 191 | 116 | 4 | 19 | 203 | 25 | 212 | 3.43e-29 | 108 |
| Msa1276390 | MtrunA17_Chr7g0271211 | 37.342 | 158 | 97 | 1 | 22 | 177 | 26 | 183 | 9.83e-29 | 107 |
| Msa1276390 | MtrunA17_Chr5g0414971 | 32.804 | 189 | 122 | 3 | 22 | 205 | 33 | 221 | 1.51e-28 | 106 |
| Msa1276390 | MtrunA17_Chr6g0449761 | 38.421 | 190 | 107 | 6 | 22 | 203 | 28 | 215 | 6.23e-28 | 105 |
| Msa1276390 | MtrunA17_Chr6g0449751 | 38.421 | 190 | 107 | 6 | 22 | 203 | 28 | 215 | 6.50e-28 | 105 |
| Msa1276390 | MtrunA17_Chr6g0449731 | 38.421 | 190 | 107 | 6 | 22 | 203 | 28 | 215 | 7.38e-28 | 104 |
| Msa1276390 | MtrunA17_Chr3g0084501 | 50.980 | 102 | 47 | 2 | 4 | 103 | 6 | 106 | 2.31e-27 | 100 |
| Msa1276390 | MtrunA17_Chr1g0189841 | 36.757 | 185 | 106 | 5 | 3 | 177 | 6 | 189 | 2.39e-27 | 103 |
| Msa1276390 | MtrunA17_Chr6g0449771 | 37.895 | 190 | 108 | 6 | 22 | 203 | 28 | 215 | 4.45e-27 | 102 |
| Msa1276390 | MtrunA17_Chr2g0292861 | 35.465 | 172 | 104 | 4 | 39 | 203 | 7 | 178 | 3.03e-26 | 99.4 |
| Msa1276390 | MtrunA17_Chr1g0193671 | 31.694 | 183 | 121 | 2 | 22 | 200 | 29 | 211 | 7.49e-26 | 99.8 |
| Msa1276390 | MtrunA17_Chr2g0292841 | 35.465 | 172 | 104 | 4 | 39 | 203 | 7 | 178 | 2.21e-25 | 97.4 |
| Msa1276390 | MtrunA17_Chr8g0335851 | 32.308 | 195 | 126 | 4 | 2 | 191 | 11 | 204 | 4.94e-25 | 97.4 |
| Msa1276390 | MtrunA17_Chr2g0285871 | 33.333 | 210 | 127 | 7 | 1 | 200 | 7 | 213 | 5.73e-25 | 97.4 |
| Msa1276390 | MtrunA17_Chr4g0007041 | 34.759 | 187 | 111 | 6 | 1 | 179 | 7 | 190 | 9.93e-25 | 96.7 |
| Msa1276390 | MtrunA17_Chr4g0007051 | 32.857 | 210 | 128 | 7 | 1 | 200 | 7 | 213 | 1.24e-24 | 96.7 |
| Msa1276390 | MtrunA17_Chr4g0007031 | 34.759 | 187 | 111 | 6 | 1 | 179 | 7 | 190 | 1.55e-24 | 96.3 |
| Msa1276390 | MtrunA17_Chr5g0419971 | 34.759 | 187 | 111 | 6 | 1 | 179 | 7 | 190 | 1.55e-24 | 96.3 |
| Msa1276390 | MtrunA17_Chr5g0419981 | 34.759 | 187 | 111 | 6 | 1 | 179 | 7 | 190 | 1.55e-24 | 96.3 |
| Msa1276390 | MtrunA17_Chr6g0449791 | 35.429 | 175 | 103 | 6 | 1 | 167 | 6 | 178 | 2.86e-22 | 90.1 |
| Msa1276390 | MtrunA17_Chr3g0130241 | 35.294 | 153 | 80 | 3 | 29 | 167 | 96 | 243 | 5.88e-22 | 90.9 |
| Msa1276390 | MtrunA17_Chr2g0292911 | 37.607 | 117 | 69 | 2 | 39 | 151 | 7 | 123 | 1.65e-20 | 83.6 |
| Msa1276390 | MtrunA17_Chr6g0449781 | 32.275 | 189 | 119 | 6 | 22 | 203 | 28 | 214 | 3.22e-19 | 82.0 |
| Msa1276390 | MtrunA17_Chr2g0321581 | 30.114 | 176 | 104 | 4 | 45 | 203 | 31 | 204 | 8.24e-19 | 80.9 |
| Msa1276390 | MtrunA17_Chr2g0321591 | 29.545 | 176 | 105 | 4 | 45 | 203 | 31 | 204 | 2.51e-18 | 79.3 |
| Msa1276390 | MtrunA17_Chr2g0321601 | 33.588 | 131 | 86 | 1 | 74 | 203 | 73 | 203 | 6.30e-18 | 78.6 |
| Msa1276390 | MtrunA17_Chr4g0026201 | 31.953 | 169 | 112 | 2 | 38 | 203 | 37 | 205 | 4.24e-17 | 76.3 |
| Msa1276390 | MtrunA17_Chr4g0026191 | 31.953 | 169 | 112 | 2 | 38 | 203 | 37 | 205 | 5.85e-17 | 75.9 |
| Msa1276390 | MtrunA17_Chr2g0327651 | 32.323 | 99 | 65 | 2 | 41 | 138 | 7 | 104 | 6.25e-13 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1276390 | AT1G72610.1 | 53.886 | 193 | 87 | 1 | 17 | 207 | 16 | 208 | 2.92e-73 | 221 |
| Msa1276390 | AT5G20630.1 | 50.962 | 208 | 99 | 2 | 1 | 206 | 4 | 210 | 7.89e-70 | 212 |
| Msa1276390 | AT1G18980.1 | 37.073 | 205 | 125 | 2 | 3 | 203 | 14 | 218 | 1.99e-41 | 140 |
| Msa1276390 | AT1G18970.1 | 35.610 | 205 | 128 | 2 | 1 | 203 | 16 | 218 | 3.34e-39 | 134 |
| Msa1276390 | AT3G04200.1 | 39.791 | 191 | 107 | 4 | 22 | 204 | 33 | 223 | 1.17e-36 | 128 |
| Msa1276390 | AT3G05930.1 | 36.813 | 182 | 111 | 3 | 2 | 179 | 8 | 189 | 6.27e-33 | 118 |
| Msa1276390 | AT5G26700.1 | 36.946 | 203 | 118 | 5 | 4 | 200 | 8 | 206 | 6.82e-33 | 118 |
| Msa1276390 | AT1G09560.1 | 34.343 | 198 | 126 | 2 | 10 | 203 | 18 | 215 | 3.06e-31 | 114 |
| Msa1276390 | AT3G10080.1 | 34.715 | 193 | 114 | 5 | 20 | 203 | 30 | 219 | 6.08e-31 | 113 |
| Msa1276390 | AT3G10080.2 | 34.715 | 193 | 114 | 5 | 20 | 203 | 101 | 290 | 2.64e-30 | 113 |
| Msa1276390 | AT5G38960.1 | 36.788 | 193 | 111 | 7 | 22 | 204 | 32 | 223 | 2.95e-30 | 111 |
| Msa1276390 | AT1G02335.1 | 34.810 | 158 | 101 | 1 | 22 | 177 | 30 | 187 | 1.26e-29 | 109 |
| Msa1276390 | AT3G04150.1 | 33.178 | 214 | 135 | 4 | 2 | 207 | 12 | 225 | 2.37e-29 | 109 |
| Msa1276390 | AT5G61750.1 | 33.523 | 176 | 101 | 3 | 2 | 167 | 5 | 174 | 3.31e-29 | 108 |
| Msa1276390 | AT1G74820.1 | 32.558 | 172 | 110 | 1 | 1 | 166 | 15 | 186 | 8.04e-29 | 107 |
| Msa1276390 | AT3G62020.1 | 30.435 | 207 | 139 | 3 | 3 | 204 | 10 | 216 | 1.56e-28 | 107 |
| Msa1276390 | AT3G04150.2 | 31.278 | 227 | 135 | 4 | 2 | 207 | 12 | 238 | 2.56e-28 | 107 |
| Msa1276390 | AT3G05950.1 | 36.842 | 190 | 112 | 4 | 22 | 203 | 32 | 221 | 5.47e-28 | 105 |
| Msa1276390 | AT5G39110.1 | 34.579 | 214 | 125 | 5 | 5 | 203 | 7 | 220 | 9.30e-28 | 105 |
| Msa1276390 | AT5G38910.1 | 33.493 | 209 | 129 | 5 | 4 | 203 | 12 | 219 | 6.64e-27 | 102 |
| Msa1276390 | AT5G38940.1 | 34.211 | 190 | 117 | 4 | 22 | 203 | 32 | 221 | 3.17e-26 | 100 |
| Msa1276390 | AT3G04190.1 | 35.602 | 191 | 113 | 6 | 22 | 203 | 32 | 221 | 3.59e-26 | 100 |
| Msa1276390 | AT5G39160.3 | 34.375 | 192 | 112 | 5 | 22 | 204 | 30 | 216 | 4.01e-26 | 100 |
| Msa1276390 | AT5G38940.2 | 34.211 | 190 | 117 | 4 | 22 | 203 | 56 | 245 | 5.72e-26 | 100 |
| Msa1276390 | AT5G39160.1 | 34.375 | 192 | 116 | 5 | 22 | 204 | 30 | 220 | 7.79e-26 | 100 |
| Msa1276390 | AT5G39190.1 | 34.375 | 192 | 116 | 5 | 22 | 204 | 30 | 220 | 9.63e-26 | 99.8 |
| Msa1276390 | AT5G38930.1 | 34.211 | 190 | 117 | 5 | 22 | 203 | 32 | 221 | 1.74e-25 | 99.0 |
| Msa1276390 | AT5G39120.1 | 31.776 | 214 | 134 | 6 | 1 | 203 | 7 | 219 | 2.20e-25 | 99.0 |
| Msa1276390 | AT5G39130.1 | 33.854 | 192 | 117 | 5 | 22 | 204 | 30 | 220 | 1.45e-24 | 96.7 |
| Msa1276390 | AT3G62020.2 | 31.034 | 174 | 115 | 3 | 35 | 203 | 13 | 186 | 2.00e-24 | 95.5 |
| Msa1276390 | AT5G39150.1 | 30.516 | 213 | 137 | 5 | 1 | 203 | 8 | 219 | 2.09e-24 | 96.3 |
| Msa1276390 | AT5G39180.1 | 30.516 | 213 | 137 | 5 | 1 | 203 | 8 | 219 | 3.33e-24 | 95.9 |
| Msa1276390 | AT4G14630.1 | 34.762 | 210 | 125 | 7 | 5 | 203 | 14 | 222 | 4.29e-24 | 95.5 |
| Msa1276390 | AT3G04180.1 | 34.184 | 196 | 109 | 7 | 22 | 203 | 32 | 221 | 1.49e-23 | 94.0 |
| Msa1276390 | AT3G04170.1 | 34.112 | 214 | 119 | 9 | 5 | 203 | 12 | 218 | 1.96e-22 | 91.3 |
| Msa1276390 | AT1G10460.1 | 33.333 | 162 | 101 | 4 | 22 | 176 | 25 | 186 | 4.44e-22 | 90.1 |
| Msa1276390 | AT5G39160.2 | 34.416 | 154 | 95 | 3 | 56 | 204 | 46 | 198 | 1.55e-21 | 88.2 |
| Msa1276390 | AT5G39190.2 | 34.416 | 154 | 95 | 3 | 56 | 204 | 46 | 198 | 1.67e-21 | 88.2 |
Find 26 sgRNAs with CRISPR-Local
Find 40 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCAATTTCCAGCTGTTAA+TGG | 0.204007 | 8_3:+11017555 | Msa1276390:CDS |
| GTTTACTCCAACTTCAATTC+AGG | 0.252771 | 8_3:+11017483 | Msa1276390:CDS |
| ATTCTTGATCTTGCTTTGTT+TGG | 0.254800 | 8_3:+11017846 | Msa1276390:CDS |
| ACTTTCTAAAGGTCAAATTT+TGG | 0.284643 | 8_3:+11017728 | Msa1276390:CDS |
| TTTCCAGCTGTTAATGGTCT+TGG | 0.322031 | 8_3:+11017561 | Msa1276390:CDS |
| TCTTCTCCACAAACCCCTTC+AGG | 0.334680 | 8_3:+11017423 | Msa1276390:CDS |
| TAGTACAGAAGCATTGGATA+TGG | 0.406392 | 8_3:-11017379 | None:intergenic |
| GGGTAGCCTGAAGGGGTTTG+TGG | 0.459050 | 8_3:-11017429 | None:intergenic |
| GGAAATTGATTAACAAATGC+AGG | 0.482605 | 8_3:-11017543 | None:intergenic |
| CGCTTCCGAGTTAATGATTG+TGG | 0.496243 | 8_3:+11017647 | Msa1276390:CDS |
| TTTATCAAGACACTTTCTAA+AGG | 0.499284 | 8_3:+11017717 | Msa1276390:CDS |
| GAAGTCTAGTACAGAAGCAT+TGG | 0.509708 | 8_3:-11017385 | None:intergenic |
| AGTGTTTCCTGAATTGAAGT+TGG | 0.520987 | 8_3:-11017490 | None:intergenic |
| GCAAAACTAGACTTAGATGT+TGG | 0.536437 | 8_3:+11017594 | Msa1276390:CDS |
| GTACAAGGTCGTATAACTGC+TGG | 0.537303 | 8_3:+11017669 | Msa1276390:CDS |
| AGATCAAGAATTTGTGAACC+AGG | 0.540464 | 8_3:-11017834 | None:intergenic |
| AAACCAAGACCATTAACAGC+TGG | 0.550935 | 8_3:-11017564 | None:intergenic |
| AAACTAGACTTAGATGTTGG+AGG | 0.572259 | 8_3:+11017597 | Msa1276390:CDS |
| GCGCCGCGATGTGAATGCAT+TGG | 0.582043 | 8_3:-11017627 | None:intergenic |
| TTTGCAAGGGTAGCCTGAAG+GGG | 0.597548 | 8_3:-11017436 | None:intergenic |
| GAGTTAATGATTGTGGTACA+AGG | 0.605400 | 8_3:+11017654 | Msa1276390:CDS |
| GATCAAGAATTTGTGAACCA+GGG | 0.620980 | 8_3:-11017833 | None:intergenic |
| AATGTGAGAGAAGAGTTAAG+AGG | 0.621704 | 8_3:-11017356 | None:intergenic |
| TTGTACCACAATCATTAACT+CGG | 0.645177 | 8_3:-11017652 | None:intergenic |
| TGAAAATGCAACAAACCTTG+TGG | 0.665243 | 8_3:-11017756 | None:intergenic |
| ATACCAATGCATTCACATCG+CGG | 0.682883 | 8_3:+11017624 | Msa1276390:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTACTGATTTTTTGCAA+GGG | - | chr8_3:11017452-11017471 | None:intergenic | 25.0% |
| !!! | ATTGTTACTGATTTTTTGCA+AGG | - | chr8_3:11017453-11017472 | None:intergenic | 25.0% |
| ! | TTTATCAAGACACTTTCTAA+AGG | + | chr8_3:11017717-11017736 | Msa1276390:CDS | 25.0% |
| !!! | ACTTTCTAAAGGTCAAATTT+TGG | + | chr8_3:11017728-11017747 | Msa1276390:CDS | 25.0% |
| !! | TTGCATTTTCAATATAATGC+TGG | + | chr8_3:11017768-11017787 | Msa1276390:CDS | 25.0% |
| !! | ATTTTCAATATAATGCTGGA+AGG | + | chr8_3:11017772-11017791 | Msa1276390:CDS | 25.0% |
| !!! | AAAAAGCTTAAGGCTATTTT+TGG | + | chr8_3:11017927-11017946 | Msa1276390:CDS | 25.0% |
| GGAAATTGATTAACAAATGC+AGG | - | chr8_3:11017546-11017565 | None:intergenic | 30.0% | |
| AATCAATTTCCAGCTGTTAA+TGG | + | chr8_3:11017555-11017574 | Msa1276390:CDS | 30.0% | |
| TTGTACCACAATCATTAACT+CGG | - | chr8_3:11017655-11017674 | None:intergenic | 30.0% | |
| ! | ATTCTTGATCTTGCTTTGTT+TGG | + | chr8_3:11017846-11017865 | Msa1276390:CDS | 30.0% |
| !!! | TTAAGCTTTTTAACTTGAGC+AGG | - | chr8_3:11017918-11017937 | None:intergenic | 30.0% |
| TGCTCAAGTTAAAAAGCTTA+AGG | + | chr8_3:11017917-11017936 | Msa1276390:CDS | 30.0% | |
| AATGTGAGAGAAGAGTTAAG+AGG | - | chr8_3:11017359-11017378 | None:intergenic | 35.0% | |
| !! | TAGTACAGAAGCATTGGATA+TGG | - | chr8_3:11017382-11017401 | None:intergenic | 35.0% |
| GTTTACTCCAACTTCAATTC+AGG | + | chr8_3:11017483-11017502 | Msa1276390:CDS | 35.0% | |
| AGTGTTTCCTGAATTGAAGT+TGG | - | chr8_3:11017493-11017512 | None:intergenic | 35.0% | |
| GCAAAACTAGACTTAGATGT+TGG | + | chr8_3:11017594-11017613 | Msa1276390:CDS | 35.0% | |
| AAACTAGACTTAGATGTTGG+AGG | + | chr8_3:11017597-11017616 | Msa1276390:CDS | 35.0% | |
| GAGTTAATGATTGTGGTACA+AGG | + | chr8_3:11017654-11017673 | Msa1276390:CDS | 35.0% | |
| TGAAAATGCAACAAACCTTG+TGG | - | chr8_3:11017759-11017778 | None:intergenic | 35.0% | |
| GATCAAGAATTTGTGAACCA+GGG | - | chr8_3:11017836-11017855 | None:intergenic | 35.0% | |
| AGATCAAGAATTTGTGAACC+AGG | - | chr8_3:11017837-11017856 | None:intergenic | 35.0% | |
| !!! | AAGCTTAAGGCTATTTTTGG+TGG | + | chr8_3:11017930-11017949 | Msa1276390:CDS | 35.0% |
| !!! | AGCTTAAGGCTATTTTTGGT+GGG | + | chr8_3:11017931-11017950 | Msa1276390:CDS | 35.0% |
| ! | GAAGTCTAGTACAGAAGCAT+TGG | - | chr8_3:11017388-11017407 | None:intergenic | 40.0% |
| TTTCCAGCTGTTAATGGTCT+TGG | + | chr8_3:11017561-11017580 | Msa1276390:CDS | 40.0% | |
| AAACCAAGACCATTAACAGC+TGG | - | chr8_3:11017567-11017586 | None:intergenic | 40.0% | |
| ATACCAATGCATTCACATCG+CGG | + | chr8_3:11017624-11017643 | Msa1276390:CDS | 40.0% | |
| !!! | CAAATTTTGGCTCTACCACA+AGG | + | chr8_3:11017741-11017760 | Msa1276390:CDS | 40.0% |
| ! | ACTTTTAGTAGTGAGAACCC+TGG | + | chr8_3:11017816-11017835 | Msa1276390:CDS | 40.0% |
| ! | TTTTGCAAGGGTAGCCTGAA+GGG | - | chr8_3:11017440-11017459 | None:intergenic | 45.0% |
| ! | TTTTTGCAAGGGTAGCCTGA+AGG | - | chr8_3:11017441-11017460 | None:intergenic | 45.0% |
| CGCTTCCGAGTTAATGATTG+TGG | + | chr8_3:11017647-11017666 | Msa1276390:CDS | 45.0% | |
| GTACAAGGTCGTATAACTGC+TGG | + | chr8_3:11017669-11017688 | Msa1276390:CDS | 45.0% | |
| !!! | AAGGCTATTTTTGGTGGGAG+TGG | + | chr8_3:11017936-11017955 | Msa1276390:CDS | 45.0% |
| TCTTCTCCACAAACCCCTTC+AGG | + | chr8_3:11017423-11017442 | Msa1276390:CDS | 50.0% | |
| TTTGCAAGGGTAGCCTGAAG+GGG | - | chr8_3:11017439-11017458 | None:intergenic | 50.0% | |
| GGGTAGCCTGAAGGGGTTTG+TGG | - | chr8_3:11017432-11017451 | None:intergenic | 60.0% | |
| GCGCCGCGATGTGAATGCAT+TGG | - | chr8_3:11017630-11017649 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 11017339 | 11017962 | 11017339 | ID=Msa1276390;Name=Msa1276390 |
| chr8_3 | mRNA | 11017339 | 11017962 | 11017339 | ID=Msa1276390-mRNA-1;Parent=Msa1276390;Name=Msa1276390-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|-1|0|1|-1|1|1|0|207 |
| chr8_3 | exon | 11017339 | 11017962 | 11017339 | ID=Msa1276390-mRNA-1:exon:4528;Parent=Msa1276390-mRNA-1 |
| chr8_3 | CDS | 11017339 | 11017962 | 11017339 | ID=Msa1276390-mRNA-1:cds;Parent=Msa1276390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
