AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1323030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1323030 MtrunA17_Chr8g0355861 92.308 260 12 1 1 252 15 274 0.0 499
Msa1323030 MtrunA17_Chr8g0355321 57.718 298 67 4 1 239 6 303 4.23e-118 339
Msa1323030 MtrunA17_Chr1g0168781 57.854 261 96 7 1 252 14 269 1.42e-101 296
Msa1323030 MtrunA17_Chr8g0355311 75.581 172 37 2 83 252 33 201 5.38e-94 275
Msa1323030 MtrunA17_Chr8g0355871 55.365 233 90 3 28 252 10 236 1.77e-89 264
Msa1323030 MtrunA17_Chr8g0355331 71.264 174 48 1 81 252 262 435 4.60e-87 265
Msa1323030 MtrunA17_Chr8g0355331 51.042 96 42 1 1 96 14 104 4.55e-25 102
Msa1323030 MtrunA17_Chr8g0355841 73.292 161 43 0 92 252 363 523 2.55e-85 263
Msa1323030 MtrunA17_Chr8g0355841 53.922 102 39 1 1 94 14 115 2.78e-23 98.2
Msa1323030 MtrunA17_Chr8g0355831 76.250 160 38 0 93 252 206 365 2.00e-82 251
Msa1323030 MtrunA17_Chr8g0355831 54.286 105 40 1 3 99 16 120 2.07e-29 113
Msa1323030 MtrunA17_Chr2g0318901 45.306 245 114 4 8 239 23 260 3.61e-77 234
Msa1323030 MtrunA17_Chr2g0318931 47.500 240 111 7 13 239 34 271 1.64e-73 225
Msa1323030 MtrunA17_Chr2g0318871 45.600 250 106 6 8 239 23 260 6.67e-72 221
Msa1323030 MtrunA17_Chr3g0139431 35.065 308 130 8 1 238 14 321 8.77e-49 163
Msa1323030 MtrunA17_Chr1g0147261 33.451 284 141 8 1 236 14 297 3.28e-43 148
Msa1323030 MtrunA17_Chr1g0147331 32.203 295 128 9 15 237 29 323 1.30e-39 139
Msa1323030 MtrunA17_Chr1g0147251 38.049 205 104 8 55 236 36 240 2.52e-38 134
Msa1323030 MtrunA17_Chr1g0147291 37.615 218 107 9 48 237 49 265 9.73e-38 133
Msa1323030 MtrunA17_Chr1g0146631 31.613 310 139 11 1 237 14 323 1.49e-37 134
Msa1323030 MtrunA17_Chr1g0147301 36.486 222 108 9 48 237 63 283 4.43e-37 132
Msa1323030 MtrunA17_Chr1g0147321 36.866 217 108 9 48 236 20 235 7.91e-37 130
Msa1323030 MtrunA17_Chr1g0147311 30.897 301 129 11 15 237 55 354 1.35e-36 132
Msa1323030 MtrunA17_Chr1g0147271 35.294 221 111 8 48 237 164 383 3.87e-35 129
Msa1323030 MtrunA17_Chr1g0147241 30.303 297 146 10 1 236 14 310 8.77e-34 124
Msa1323030 MtrunA17_Chr3g0144421 31.858 226 121 8 45 238 78 302 7.29e-23 94.7
Msa1323030 MtrunA17_Chr4g0034821 31.944 216 115 8 55 238 76 291 4.76e-21 89.7
Msa1323030 MtrunA17_Chr3g0138231 36.486 148 84 4 101 238 119 266 1.77e-20 87.8
Msa1323030 MtrunA17_Chr3g0144391 32.558 215 115 8 54 238 291 505 7.67e-20 88.2
Msa1323030 MtrunA17_Chr3g0144411 32.558 215 115 8 54 238 324 538 1.16e-19 87.8
Msa1323030 MtrunA17_Chr3g0144451 36.913 149 84 5 101 239 128 276 1.57e-19 85.5
Msa1323030 MtrunA17_Chr4g0034721 31.797 217 116 10 54 238 360 576 6.79e-18 82.8
Msa1323030 MtrunA17_Chr4g0034731 30.275 218 120 11 53 238 215 432 1.38e-17 81.3
Msa1323030 MtrunA17_Chr4g0034451 28.829 222 126 11 54 243 310 531 3.72e-17 80.5
Msa1323030 MtrunA17_Chr8g0365361 33.784 148 88 5 99 237 247 393 3.29e-15 74.3
Msa1323030 MtrunA17_Chr8g0365401 34.247 146 86 6 101 237 480 624 4.74e-14 71.2
Msa1323030 MtrunA17_Chr4g0076231 29.655 145 93 4 101 236 12 156 2.77e-13 65.9
Msa1323030 MtrunA17_Chr8g0365381 32.500 160 93 6 92 236 481 640 1.17e-12 67.4
Msa1323030 MtrunA17_Chr5g0413591 30.345 145 93 4 101 237 483 627 1.21e-12 67.4
Msa1323030 MtrunA17_Chr6g0485051 30.070 143 88 6 108 238 63 205 7.39e-11 60.1
Msa1323030 MtrunA17_Chr8g0355301 63.889 36 13 0 1 36 14 49 8.10e-11 56.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1323030 AT5G25610.1 35.349 215 104 9 55 236 177 389 2.18e-34 127
Msa1323030 AT1G49320.1 33.831 201 101 10 57 237 90 278 4.35e-20 87.4
Msa1323030 AT1G70370.2 31.034 145 92 4 101 237 479 623 1.69e-15 76.3
Msa1323030 AT1G70370.1 31.034 145 92 4 101 237 479 623 1.69e-15 76.3
Msa1323030 AT1G23760.1 30.137 146 92 5 101 237 475 619 2.12e-13 69.7
Msa1323030 AT1G60390.1 31.507 146 92 5 99 236 475 620 3.21e-13 69.3

Find 61 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATATATTGGTCTTGGTTT+TGG 0.131953 8_4:-30724286 None:intergenic
GTAGAGGAAGTGAAGAAAAT+TGG 0.216702 8_4:+30724308 Msa1323030:CDS
CTCCTCGACCTGTTTATTTC+GGG 0.253023 8_4:+30723693 Msa1323030:CDS
CAAAATCTATCATTGATTCT+AGG 0.259423 8_4:-30724214 None:intergenic
TCTCCTCGACCTGTTTATTT+CGG 0.276245 8_4:+30723692 Msa1323030:CDS
CTTGTCAAATTGATCACTAA+TGG 0.289242 8_4:-30723991 None:intergenic
ATCAATTTGACAAGCAAGAT+TGG 0.320032 8_4:+30724000 Msa1323030:CDS
GTATGAATCCAGCAGCTATA+GGG 0.328328 8_4:+30724168 Msa1323030:CDS
CACAATCTGAAGAAGAATAT+TGG 0.333586 8_4:+30723634 Msa1323030:CDS
TTGCTAACAAAATGACATAT+TGG 0.335569 8_4:-30724536 None:intergenic
TGGAAGAATAAGACAACCTT+TGG 0.342882 8_4:+30724103 Msa1323030:CDS
TCACTTCCTCTACTATATAT+TGG 0.350269 8_4:-30724298 None:intergenic
TGACATATTGGAATTGTTCC+AGG 0.361803 8_4:-30724524 None:intergenic
TGTATGAATCCAGCAGCTAT+AGG 0.368282 8_4:+30724167 Msa1323030:CDS
CCTCTACTATATATTGGTCT+TGG 0.371712 8_4:-30724292 None:intergenic
GTAGAGGTCATGTTGGAAAA+AGG 0.374297 8_4:-30724027 None:intergenic
ATTTGTTCCAAGCTTTGAAA+TGG 0.382620 8_4:-30724237 None:intergenic
AACCTTTGGGAACATGGATA+TGG 0.395939 8_4:+30724117 Msa1323030:CDS
AACATACATAGTTCCTTTAG+TGG 0.396577 8_4:+30724406 Msa1323030:CDS
GTCTTCGGCATAGGAGTGTT+TGG 0.404247 8_4:-30723669 None:intergenic
AAGAATATTGGAAATCCGTT+TGG 0.406088 8_4:+30723646 Msa1323030:CDS
TTGTCAAATTGATCACTAAT+GGG 0.408713 8_4:-30723990 None:intergenic
AGACTCTCTTACAACATGAT+TGG 0.417528 8_4:-30724579 None:intergenic
TTGTGTTCCCCTATAGCTGC+TGG 0.418219 8_4:-30724176 None:intergenic
GGTTGTCTTATTCTTCCAAC+AGG 0.420121 8_4:-30724098 None:intergenic
GGGTCTAACCCGAAATAAAC+AGG 0.443310 8_4:-30723701 None:intergenic
GCTTCCACAAGCATTCTGAT+AGG 0.446365 8_4:+30724072 Msa1323030:CDS
CATAGGAGTGTTTGGCCAAA+CGG 0.454316 8_4:-30723661 None:intergenic
AAAATCTATCATTGATTCTA+GGG 0.465178 8_4:-30724213 None:intergenic
AGAACTTCATAAAGCACGTC+AGG 0.473905 8_4:-30724491 None:intergenic
GACTCTCTTACAACATGATT+GGG 0.475130 8_4:-30724578 None:intergenic
AACAGGTCGAGGAGAGTCTT+CGG 0.476032 8_4:-30723684 None:intergenic
GTTCCATCAGAGGCCACTAA+AGG 0.489886 8_4:-30724419 None:intergenic
GTTCCTTTAGTGGCCTCTGA+TGG 0.500787 8_4:+30724416 Msa1323030:CDS
TTCCAACATGACCTCTACCC+TGG 0.507075 8_4:+30724032 Msa1323030:CDS
TTTGGTGTAGTTAACTGTTG+TGG 0.511024 8_4:+30723599 None:intergenic
TTGATGTTGCATTGACTTGG+TGG 0.512892 8_4:-30724385 None:intergenic
GAAGTTCTCAAAGTCAAGCC+TGG 0.515439 8_4:+30724506 Msa1323030:CDS
TCGAGGAGAGTCTTCGGCAT+AGG 0.518419 8_4:-30723678 None:intergenic
TAAGACAACCTTTGGGAACA+TGG 0.519820 8_4:+30724111 Msa1323030:CDS
CCACCATGACACAAGAGGTA+TGG 0.535676 8_4:+30724466 Msa1323030:CDS
CCTGGAAAGAAAATGAGCTT+AGG 0.538447 8_4:+30724050 Msa1323030:CDS
GTATCCTATCAGAATGCTTG+TGG 0.540753 8_4:-30724076 None:intergenic
ATGTTGATGTTGCATTGACT+TGG 0.542701 8_4:-30724388 None:intergenic
GGAAGAATAAGACAACCTTT+GGG 0.545608 8_4:+30724104 Msa1323030:CDS
GATCCATACCTCTTGTGTCA+TGG 0.556844 8_4:-30724469 None:intergenic
TTCCAGGGTAGAGGTCATGT+TGG 0.557459 8_4:-30724034 None:intergenic
CTTCGCTTTAGTTCCATCAG+AGG 0.557690 8_4:-30724429 None:intergenic
CATTCTGATAGGATACCTGT+TGG 0.559391 8_4:+30724083 Msa1323030:CDS
ATTTAGTTTATGACACATCA+CGG 0.560330 8_4:-30724339 None:intergenic
AACCCGAAATAAACAGGTCG+AGG 0.560730 8_4:-30723695 None:intergenic
TATGAATCCAGCAGCTATAG+GGG 0.565993 8_4:+30724169 Msa1323030:CDS
CTCCATATCCATGTTCCCAA+AGG 0.572259 8_4:-30724119 None:intergenic
CTCTGATGGAACTAAAGCGA+AGG 0.574492 8_4:+30724430 Msa1323030:CDS
TTAGCAACAAGGCCATTGCA+TGG 0.576149 8_4:+30724552 Msa1323030:CDS
TAGCAACAAGGCCATTGCAT+GGG 0.577381 8_4:+30724553 Msa1323030:CDS
CCATACCTCTTGTGTCATGG+TGG 0.610701 8_4:-30724466 None:intergenic
ATGATTGGGTACCCATGCAA+TGG 0.623581 8_4:-30724564 None:intergenic
CCAAGACCAATATATAGTAG+AGG 0.626479 8_4:+30724292 Msa1323030:CDS
ATATGCCACCATGACACAAG+AGG 0.638160 8_4:+30724461 Msa1323030:CDS
GACACAGATTATATGACACA+AGG 0.694555 8_4:-30724611 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGTCTTAATATCTTAATA+AGG + chr8_4:30723920-30723939 Msa1323030:intron 15.0%
!! TATGTCTTAATATCTTAATA+AGG + chr8_4:30723920-30723939 Msa1323030:intron 15.0%
!! AATATAGACAATCAAAAAGT+GGG - chr8_4:30723724-30723743 None:intergenic 20.0%
!! AAATATAGACAATCAAAAAG+TGG - chr8_4:30723725-30723744 None:intergenic 20.0%
!!! AAAATCTATCATTGATTCTA+GGG - chr8_4:30724216-30724235 None:intergenic 20.0%
!! AATATAGACAATCAAAAAGT+GGG - chr8_4:30723724-30723743 None:intergenic 20.0%
!! AAATATAGACAATCAAAAAG+TGG - chr8_4:30723725-30723744 None:intergenic 20.0%
!!! AAAATCTATCATTGATTCTA+GGG - chr8_4:30724216-30724235 None:intergenic 20.0%
! TTGTCAAATTGATCACTAAT+GGG - chr8_4:30723993-30724012 None:intergenic 25.0%
!!! CAAAATCTATCATTGATTCT+AGG - chr8_4:30724217-30724236 None:intergenic 25.0%
!!! TATATATTGGTCTTGGTTTT+GGG - chr8_4:30724288-30724307 None:intergenic 25.0%
!! ATTTAGTTTATGACACATCA+CGG - chr8_4:30724342-30724361 None:intergenic 25.0%
! TTGCTAACAAAATGACATAT+TGG - chr8_4:30724539-30724558 None:intergenic 25.0%
! TTGTCAAATTGATCACTAAT+GGG - chr8_4:30723993-30724012 None:intergenic 25.0%
!!! CAAAATCTATCATTGATTCT+AGG - chr8_4:30724217-30724236 None:intergenic 25.0%
!!! TATATATTGGTCTTGGTTTT+GGG - chr8_4:30724288-30724307 None:intergenic 25.0%
!! ATTTAGTTTATGACACATCA+CGG - chr8_4:30724342-30724361 None:intergenic 25.0%
! TTGCTAACAAAATGACATAT+TGG - chr8_4:30724539-30724558 None:intergenic 25.0%
CACAATCTGAAGAAGAATAT+TGG + chr8_4:30723634-30723653 Msa1323030:CDS 30.0%
AAGAATATTGGAAATCCGTT+TGG + chr8_4:30723646-30723665 Msa1323030:CDS 30.0%
AACCTTGAACATTGAAATCA+TGG - chr8_4:30723771-30723790 None:intergenic 30.0%
CTTGTCAAATTGATCACTAA+TGG - chr8_4:30723994-30724013 None:intergenic 30.0%
ATCAATTTGACAAGCAAGAT+TGG + chr8_4:30724000-30724019 Msa1323030:CDS 30.0%
!! ATTTGTTCCAAGCTTTGAAA+TGG - chr8_4:30724240-30724259 None:intergenic 30.0%
!!! CTATATATTGGTCTTGGTTT+TGG - chr8_4:30724289-30724308 None:intergenic 30.0%
TCACTTCCTCTACTATATAT+TGG - chr8_4:30724301-30724320 None:intergenic 30.0%
AACATACATAGTTCCTTTAG+TGG + chr8_4:30724406-30724425 Msa1323030:CDS 30.0%
!!! ATGTCATTTTGTTAGCAACA+AGG + chr8_4:30724541-30724560 Msa1323030:CDS 30.0%
CACAATCTGAAGAAGAATAT+TGG + chr8_4:30723634-30723653 Msa1323030:CDS 30.0%
AAGAATATTGGAAATCCGTT+TGG + chr8_4:30723646-30723665 Msa1323030:CDS 30.0%
AACCTTGAACATTGAAATCA+TGG - chr8_4:30723771-30723790 None:intergenic 30.0%
CTTGTCAAATTGATCACTAA+TGG - chr8_4:30723994-30724013 None:intergenic 30.0%
ATCAATTTGACAAGCAAGAT+TGG + chr8_4:30724000-30724019 Msa1323030:CDS 30.0%
!! ATTTGTTCCAAGCTTTGAAA+TGG - chr8_4:30724240-30724259 None:intergenic 30.0%
!!! CTATATATTGGTCTTGGTTT+TGG - chr8_4:30724289-30724308 None:intergenic 30.0%
TCACTTCCTCTACTATATAT+TGG - chr8_4:30724301-30724320 None:intergenic 30.0%
AACATACATAGTTCCTTTAG+TGG + chr8_4:30724406-30724425 Msa1323030:CDS 30.0%
!!! ATGTCATTTTGTTAGCAACA+AGG + chr8_4:30724541-30724560 Msa1323030:CDS 30.0%
TGCCATGATTTCAATGTTCA+AGG + chr8_4:30723766-30723785 Msa1323030:intron 35.0%
! CTAAGCTCATTTTCTTTCCA+GGG - chr8_4:30724052-30724071 None:intergenic 35.0%
TGGAAGAATAAGACAACCTT+TGG + chr8_4:30724103-30724122 Msa1323030:CDS 35.0%
GGAAGAATAAGACAACCTTT+GGG + chr8_4:30724104-30724123 Msa1323030:CDS 35.0%
!! GATTTTGCCATTTCAAAGCT+TGG + chr8_4:30724230-30724249 Msa1323030:CDS 35.0%
! CCTCTACTATATATTGGTCT+TGG - chr8_4:30724295-30724314 None:intergenic 35.0%
CCAAGACCAATATATAGTAG+AGG + chr8_4:30724292-30724311 Msa1323030:CDS 35.0%
GTAGAGGAAGTGAAGAAAAT+TGG + chr8_4:30724308-30724327 Msa1323030:CDS 35.0%
!! ATGTTGATGTTGCATTGACT+TGG - chr8_4:30724391-30724410 None:intergenic 35.0%
TGACATATTGGAATTGTTCC+AGG - chr8_4:30724527-30724546 None:intergenic 35.0%
GACTCTCTTACAACATGATT+GGG - chr8_4:30724581-30724600 None:intergenic 35.0%
AGACTCTCTTACAACATGAT+TGG - chr8_4:30724582-30724601 None:intergenic 35.0%
TGCCATGATTTCAATGTTCA+AGG + chr8_4:30723766-30723785 Msa1323030:intron 35.0%
! CTAAGCTCATTTTCTTTCCA+GGG - chr8_4:30724052-30724071 None:intergenic 35.0%
TGGAAGAATAAGACAACCTT+TGG + chr8_4:30724103-30724122 Msa1323030:CDS 35.0%
GGAAGAATAAGACAACCTTT+GGG + chr8_4:30724104-30724123 Msa1323030:CDS 35.0%
!! GATTTTGCCATTTCAAAGCT+TGG + chr8_4:30724230-30724249 Msa1323030:CDS 35.0%
! CCTCTACTATATATTGGTCT+TGG - chr8_4:30724295-30724314 None:intergenic 35.0%
CCAAGACCAATATATAGTAG+AGG + chr8_4:30724292-30724311 Msa1323030:CDS 35.0%
GTAGAGGAAGTGAAGAAAAT+TGG + chr8_4:30724308-30724327 Msa1323030:CDS 35.0%
!! ATGTTGATGTTGCATTGACT+TGG - chr8_4:30724391-30724410 None:intergenic 35.0%
TGACATATTGGAATTGTTCC+AGG - chr8_4:30724527-30724546 None:intergenic 35.0%
GACTCTCTTACAACATGATT+GGG - chr8_4:30724581-30724600 None:intergenic 35.0%
AGACTCTCTTACAACATGAT+TGG - chr8_4:30724582-30724601 None:intergenic 35.0%
TCTCCTCGACCTGTTTATTT+CGG + chr8_4:30723692-30723711 Msa1323030:CDS 40.0%
GTAGAGGTCATGTTGGAAAA+AGG - chr8_4:30724030-30724049 None:intergenic 40.0%
! TCATTTTCTTTCCAGGGTAG+AGG - chr8_4:30724046-30724065 None:intergenic 40.0%
! CCTAAGCTCATTTTCTTTCC+AGG - chr8_4:30724053-30724072 None:intergenic 40.0%
CCTGGAAAGAAAATGAGCTT+AGG + chr8_4:30724050-30724069 Msa1323030:CDS 40.0%
GTATCCTATCAGAATGCTTG+TGG - chr8_4:30724079-30724098 None:intergenic 40.0%
CATTCTGATAGGATACCTGT+TGG + chr8_4:30724083-30724102 Msa1323030:CDS 40.0%
! GGTTGTCTTATTCTTCCAAC+AGG - chr8_4:30724101-30724120 None:intergenic 40.0%
! TAAGACAACCTTTGGGAACA+TGG + chr8_4:30724111-30724130 Msa1323030:CDS 40.0%
! AACCTTTGGGAACATGGATA+TGG + chr8_4:30724117-30724136 Msa1323030:CDS 40.0%
TGTATGAATCCAGCAGCTAT+AGG + chr8_4:30724167-30724186 Msa1323030:CDS 40.0%
GTATGAATCCAGCAGCTATA+GGG + chr8_4:30724168-30724187 Msa1323030:CDS 40.0%
TATGAATCCAGCAGCTATAG+GGG + chr8_4:30724169-30724188 Msa1323030:CDS 40.0%
!! TTGATGTTGCATTGACTTGG+TGG - chr8_4:30724388-30724407 None:intergenic 40.0%
AGAACTTCATAAAGCACGTC+AGG - chr8_4:30724494-30724513 None:intergenic 40.0%
TCTCCTCGACCTGTTTATTT+CGG + chr8_4:30723692-30723711 Msa1323030:CDS 40.0%
GTAGAGGTCATGTTGGAAAA+AGG - chr8_4:30724030-30724049 None:intergenic 40.0%
! TCATTTTCTTTCCAGGGTAG+AGG - chr8_4:30724046-30724065 None:intergenic 40.0%
! CCTAAGCTCATTTTCTTTCC+AGG - chr8_4:30724053-30724072 None:intergenic 40.0%
CCTGGAAAGAAAATGAGCTT+AGG + chr8_4:30724050-30724069 Msa1323030:CDS 40.0%
GTATCCTATCAGAATGCTTG+TGG - chr8_4:30724079-30724098 None:intergenic 40.0%
CATTCTGATAGGATACCTGT+TGG + chr8_4:30724083-30724102 Msa1323030:CDS 40.0%
! GGTTGTCTTATTCTTCCAAC+AGG - chr8_4:30724101-30724120 None:intergenic 40.0%
! TAAGACAACCTTTGGGAACA+TGG + chr8_4:30724111-30724130 Msa1323030:CDS 40.0%
! AACCTTTGGGAACATGGATA+TGG + chr8_4:30724117-30724136 Msa1323030:CDS 40.0%
TGTATGAATCCAGCAGCTAT+AGG + chr8_4:30724167-30724186 Msa1323030:CDS 40.0%
GTATGAATCCAGCAGCTATA+GGG + chr8_4:30724168-30724187 Msa1323030:CDS 40.0%
TATGAATCCAGCAGCTATAG+GGG + chr8_4:30724169-30724188 Msa1323030:CDS 40.0%
!! TTGATGTTGCATTGACTTGG+TGG - chr8_4:30724388-30724407 None:intergenic 40.0%
AGAACTTCATAAAGCACGTC+AGG - chr8_4:30724494-30724513 None:intergenic 40.0%
!! CATAGGAGTGTTTGGCCAAA+CGG - chr8_4:30723664-30723683 None:intergenic 45.0%
CTCCTCGACCTGTTTATTTC+GGG + chr8_4:30723693-30723712 Msa1323030:CDS 45.0%
AACCCGAAATAAACAGGTCG+AGG - chr8_4:30723698-30723717 None:intergenic 45.0%
GGGTCTAACCCGAAATAAAC+AGG - chr8_4:30723704-30723723 None:intergenic 45.0%
GCTTCCACAAGCATTCTGAT+AGG + chr8_4:30724072-30724091 Msa1323030:CDS 45.0%
CTCCATATCCATGTTCCCAA+AGG - chr8_4:30724122-30724141 None:intergenic 45.0%
!!! TTGGTCTTGGTTTTGGGCAA+AGG - chr8_4:30724282-30724301 None:intergenic 45.0%
! CTTCGCTTTAGTTCCATCAG+AGG - chr8_4:30724432-30724451 None:intergenic 45.0%
CTCTGATGGAACTAAAGCGA+AGG + chr8_4:30724430-30724449 Msa1323030:CDS 45.0%
ATATGCCACCATGACACAAG+AGG + chr8_4:30724461-30724480 Msa1323030:CDS 45.0%
GATCCATACCTCTTGTGTCA+TGG - chr8_4:30724472-30724491 None:intergenic 45.0%
GAAGTTCTCAAAGTCAAGCC+TGG + chr8_4:30724506-30724525 Msa1323030:CDS 45.0%
TTAGCAACAAGGCCATTGCA+TGG + chr8_4:30724552-30724571 Msa1323030:CDS 45.0%
TAGCAACAAGGCCATTGCAT+GGG + chr8_4:30724553-30724572 Msa1323030:CDS 45.0%
ATGATTGGGTACCCATGCAA+TGG - chr8_4:30724567-30724586 None:intergenic 45.0%
!! CATAGGAGTGTTTGGCCAAA+CGG - chr8_4:30723664-30723683 None:intergenic 45.0%
CTCCTCGACCTGTTTATTTC+GGG + chr8_4:30723693-30723712 Msa1323030:CDS 45.0%
AACCCGAAATAAACAGGTCG+AGG - chr8_4:30723698-30723717 None:intergenic 45.0%
GGGTCTAACCCGAAATAAAC+AGG - chr8_4:30723704-30723723 None:intergenic 45.0%
GCTTCCACAAGCATTCTGAT+AGG + chr8_4:30724072-30724091 Msa1323030:CDS 45.0%
CTCCATATCCATGTTCCCAA+AGG - chr8_4:30724122-30724141 None:intergenic 45.0%
!!! TTGGTCTTGGTTTTGGGCAA+AGG - chr8_4:30724282-30724301 None:intergenic 45.0%
! CTTCGCTTTAGTTCCATCAG+AGG - chr8_4:30724432-30724451 None:intergenic 45.0%
CTCTGATGGAACTAAAGCGA+AGG + chr8_4:30724430-30724449 Msa1323030:CDS 45.0%
ATATGCCACCATGACACAAG+AGG + chr8_4:30724461-30724480 Msa1323030:CDS 45.0%
GATCCATACCTCTTGTGTCA+TGG - chr8_4:30724472-30724491 None:intergenic 45.0%
GAAGTTCTCAAAGTCAAGCC+TGG + chr8_4:30724506-30724525 Msa1323030:CDS 45.0%
TTAGCAACAAGGCCATTGCA+TGG + chr8_4:30724552-30724571 Msa1323030:CDS 45.0%
TAGCAACAAGGCCATTGCAT+GGG + chr8_4:30724553-30724572 Msa1323030:CDS 45.0%
ATGATTGGGTACCCATGCAA+TGG - chr8_4:30724567-30724586 None:intergenic 45.0%
!!! ATAATACTTTTTATTTTTAA+TGG + chr8_4:30723945-30723964 Msa1323030:intron 5.0%
!!! ATAATACTTTTTATTTTTAA+TGG + chr8_4:30723945-30723964 Msa1323030:intron 5.0%
!! GTCTTCGGCATAGGAGTGTT+TGG - chr8_4:30723672-30723691 None:intergenic 50.0%
AACAGGTCGAGGAGAGTCTT+CGG - chr8_4:30723687-30723706 None:intergenic 50.0%
TTCCAACATGACCTCTACCC+TGG + chr8_4:30724032-30724051 Msa1323030:CDS 50.0%
TTCCAGGGTAGAGGTCATGT+TGG - chr8_4:30724037-30724056 None:intergenic 50.0%
TTGTGTTCCCCTATAGCTGC+TGG - chr8_4:30724179-30724198 None:intergenic 50.0%
GTTCCTTTAGTGGCCTCTGA+TGG + chr8_4:30724416-30724435 Msa1323030:CDS 50.0%
GTTCCATCAGAGGCCACTAA+AGG - chr8_4:30724422-30724441 None:intergenic 50.0%
CCATACCTCTTGTGTCATGG+TGG - chr8_4:30724469-30724488 None:intergenic 50.0%
CCACCATGACACAAGAGGTA+TGG + chr8_4:30724466-30724485 Msa1323030:CDS 50.0%
!! GTCTTCGGCATAGGAGTGTT+TGG - chr8_4:30723672-30723691 None:intergenic 50.0%
AACAGGTCGAGGAGAGTCTT+CGG - chr8_4:30723687-30723706 None:intergenic 50.0%
TTCCAACATGACCTCTACCC+TGG + chr8_4:30724032-30724051 Msa1323030:CDS 50.0%
TTCCAGGGTAGAGGTCATGT+TGG - chr8_4:30724037-30724056 None:intergenic 50.0%
TTGTGTTCCCCTATAGCTGC+TGG - chr8_4:30724179-30724198 None:intergenic 50.0%
GTTCCTTTAGTGGCCTCTGA+TGG + chr8_4:30724416-30724435 Msa1323030:CDS 50.0%
GTTCCATCAGAGGCCACTAA+AGG - chr8_4:30724422-30724441 None:intergenic 50.0%
CCATACCTCTTGTGTCATGG+TGG - chr8_4:30724469-30724488 None:intergenic 50.0%
CCACCATGACACAAGAGGTA+TGG + chr8_4:30724466-30724485 Msa1323030:CDS 50.0%
TCGAGGAGAGTCTTCGGCAT+AGG - chr8_4:30723681-30723700 None:intergenic 55.0%
TCGAGGAGAGTCTTCGGCAT+AGG - chr8_4:30723681-30723700 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 30723609 30724625 30723609 ID=Msa1323030;Name=Msa1323030
chr8_4 mRNA 30723609 30724625 30723609 ID=Msa1323030-mRNA-1;Parent=Msa1323030;Name=Msa1323030-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|252
chr8_4 exon 30723609 30723714 30723609 ID=Msa1323030-mRNA-1:exon:10159;Parent=Msa1323030-mRNA-1
chr8_4 exon 30723973 30724625 30723973 ID=Msa1323030-mRNA-1:exon:10160;Parent=Msa1323030-mRNA-1
chr8_4 CDS 30723609 30723714 30723609 ID=Msa1323030-mRNA-1:cds;Parent=Msa1323030-mRNA-1
chr8_4 CDS 30723973 30724625 30723973 ID=Msa1323030-mRNA-1:cds;Parent=Msa1323030-mRNA-1
Gene Sequence

>Msa1323030

TTAACTGTTGTGGAAATTGATGCTTCACAATCTGAAGAAGAATATTGGAAATCCGTTTGGCCAAACACTCCTATGCCGAAGACTCTCCTCGACCTGTTTATTTCGGACATCGAAACTAATGTACCCATTAGTGATCAATTTGACAAGCAAGATTGGACAGCCTTTTTCCAACATGACCTCTACCCTGGAAAGAAAATGAGCTTAGGCTTCCACAAGCATTCTGATAGGATACCTGTTGGAAGAATAAGACAACCTTTGGGAACATGGATATGGAGTGAAAAACATAGTCTTAATAGCTATTGTATGAATCCAGCAGCTATAGGGGAACACAAGTATTGCGCATCATCCCTAGAATCAATGATAGATTTTGCCATTTCAAAGCTTGGAACAAATATTAAAGTGATTTCAAGTTCCTTTGCCCAAAACCAAGACCAATATATAGTAGAGGAAGTGAAGAAAATTGGAGACAAAGCCGTGATGTGTCATAAACTAAATTTCGAAGAAGTTGTATTTTATTGCCACCAAGTCAATGCAACATCAACATACATAGTTCCTTTAGTGGCCTCTGATGGAACTAAAGCGAAGGCACTAACAATATGCCACCATGACACAAGAGGTATGGATCCTGACGTGCTTTATGAAGTTCTCAAAGTCAAGCCTGGAACAATTCCAATATGTCATTTTGTTAGCAACAAGGCCATTGCATGGGTACCCAATCATGTTGTAAGAGAGTCTGATGAGAATCCTTGTGTCATATAA

Protein sequence

>Msa1323030

LTVVEIDASQSEEEYWKSVWPNTPMPKTLLDLFISDIETNVPISDQFDKQDWTAFFQHDLYPGKKMSLGFHKHSDRIPVGRIRQPLGTWIWSEKHSLNSYCMNPAAIGEHKYCASSLESMIDFAISKLGTNIKVISSSFAQNQDQYIVEEVKKIGDKAVMCHKLNFEEVVFYCHQVNATSTYIVPLVASDGTKAKALTICHHDTRGMDPDVLYEVLKVKPGTIPICHFVSNKAIAWVPNHVVRESDENPCVI*