AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0212490

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0212490 MtrunA17_Chr2g0311721 96.825 315 10 0 12 326 10 324 0.0 634
Msa0212490 MtrunA17_Chr2g0311701 92.814 167 12 0 328 494 13 179 7.85e-110 331
Msa0212490 MtrunA17_Chr2g0311711 88.554 166 19 0 328 493 11 176 7.99e-105 317
Msa0212490 MtrunA17_Chr2g0311681 83.237 173 29 0 322 494 1 173 2.91e-101 308
Msa0212490 MtrunA17_Chr2g0311691 80.925 173 33 0 322 494 1 173 3.96e-99 303
Msa0212490 MtrunA17_Chr2g0311741 72.593 135 37 0 359 493 2 136 7.96e-66 215
Msa0212490 MtrunA17_Chr2g0311751 71.642 134 38 0 359 492 2 135 1.96e-64 206
Msa0212490 MtrunA17_Chr8g0364161 58.025 162 66 1 332 493 17 176 1.42e-63 204
Msa0212490 MtrunA17_Chr4g0011311 56.790 162 68 1 332 493 17 176 6.24e-62 204
Msa0212490 MtrunA17_Chr7g0235951 57.669 163 67 1 332 494 17 177 3.19e-61 205
Msa0212490 MtrunA17_Chr1g0187821 53.448 174 79 1 322 493 3 176 3.16e-60 202
Msa0212490 MtrunA17_Chr8g0335411 53.216 171 78 1 324 494 9 177 2.26e-58 197
Msa0212490 MtrunA17_Chr1g0187831 52.907 172 77 2 326 493 8 179 1.16e-57 196
Msa0212490 MtrunA17_Chr7g0247991 56.173 162 69 1 332 493 17 176 1.35e-57 195
Msa0212490 MtrunA17_Chr8g0364471 54.938 162 71 1 332 493 17 176 4.55e-57 194
Msa0212490 MtrunA17_Chr7g0236011 54.706 170 75 1 324 493 9 176 2.47e-56 192
Msa0212490 MtrunA17_Chr8g0362741 56.173 162 55 2 332 493 17 162 1.33e-55 187
Msa0212490 MtrunA17_Chr1g0187811 53.846 169 71 2 332 493 129 297 1.88e-55 192
Msa0212490 MtrunA17_Chr8g0336751 52.469 162 76 1 332 493 43 203 3.07e-48 171
Msa0212490 MtrunA17_Chr4g0055591 46.875 160 80 1 334 493 11 165 2.48e-46 165
Msa0212490 MtrunA17_Chr8g0354241 44.186 172 93 2 324 493 9 179 5.00e-45 162
Msa0212490 MtrunA17_Chr2g0311831 46.584 161 85 1 333 493 18 177 1.87e-44 160
Msa0212490 MtrunA17_Chr2g0311761 45.963 161 86 1 333 493 18 177 3.51e-44 159
Msa0212490 MtrunA17_Chr8g0354261 45.349 172 91 2 324 493 9 179 3.94e-44 159
Msa0212490 MtrunA17_Chr4g0066991 45.029 171 72 2 324 494 9 157 9.00e-43 155
Msa0212490 MtrunA17_Chr1g0167951 44.512 164 87 2 333 496 5 164 1.97e-42 154
Msa0212490 MtrunA17_Chr1g0167911 45.342 161 85 2 333 493 5 162 1.70e-41 152
Msa0212490 MtrunA17_Chr2g0311921 42.857 161 91 1 333 493 4 163 5.56e-41 150
Msa0212490 MtrunA17_Chr1g0167961 43.605 172 93 3 323 493 10 178 1.37e-40 150
Msa0212490 MtrunA17_Chr1g0168001 43.030 165 89 3 333 493 5 168 3.42e-40 142
Msa0212490 MtrunA17_Chr8g0348081 44.025 159 84 3 336 493 16 170 1.40e-39 147
Msa0212490 MtrunA17_Chr8g0336631 45.625 160 81 4 336 493 16 171 3.79e-39 145
Msa0212490 MtrunA17_Chr6g0472861 41.143 175 92 4 328 494 8 179 4.34e-39 145
Msa0212490 MtrunA17_Chr8g0336761 44.654 159 83 3 336 493 16 170 4.64e-39 145
Msa0212490 MtrunA17_Chr7g0225881 43.373 166 88 2 332 494 12 174 5.37e-39 145
Msa0212490 MtrunA17_Chr8g0336791 40.625 160 89 3 336 493 16 171 5.86e-39 140
Msa0212490 MtrunA17_Chr7g0235991 52.000 125 60 0 370 494 7 131 1.25e-38 139
Msa0212490 MtrunA17_Chr8g0336831 40.625 160 89 3 336 493 16 171 2.56e-38 140
Msa0212490 MtrunA17_Chr1g0184241 46.000 150 76 3 332 480 18 163 1.89e-37 141
Msa0212490 MtrunA17_Chr8g0336851 40.881 159 89 2 336 493 16 170 2.17e-37 140
Msa0212490 MtrunA17_Chr8g0336781 41.875 160 87 3 336 493 51 206 8.25e-36 137
Msa0212490 MtrunA17_Chr2g0311861 42.236 161 72 2 333 493 14 153 2.57e-35 134
Msa0212490 MtrunA17_Chr2g0311821 68.421 95 24 2 388 480 11 101 8.63e-35 127
Msa0212490 MtrunA17_Chr7g0266651 38.889 162 97 2 332 493 8 167 1.60e-34 133
Msa0212490 MtrunA17_Chr4g0066121 40.625 160 89 4 336 493 16 171 3.25e-34 132
Msa0212490 MtrunA17_Chr8g0336861 41.250 160 88 4 336 493 16 171 7.93e-33 128
Msa0212490 MtrunA17_Chr7g0235981 41.358 162 61 3 332 493 3 130 2.04e-32 126
Msa0212490 MtrunA17_Chr1g0161111 36.420 162 100 1 332 493 80 238 8.95e-31 124
Msa0212490 MtrunA17_Chr1g0161081 36.420 162 100 1 332 493 21 179 1.07e-30 122
Msa0212490 MtrunA17_Chr1g0161041 34.568 162 103 1 332 493 44 202 1.68e-29 119
Msa0212490 MtrunA17_Chr4g0061581 29.032 341 214 12 14 341 16 341 1.82e-29 122
Msa0212490 MtrunA17_Chr1g0167931 49.515 103 50 1 333 435 5 105 6.34e-25 105
Msa0212490 MtrunA17_Chr1g0192821 25.352 355 225 11 23 362 28 357 2.14e-22 100
Msa0212490 MtrunA17_Chr1g0192821 28.151 238 159 7 12 242 67 299 1.32e-18 89.0
Msa0212490 MtrunA17_Chr1g0192821 28.139 231 148 6 62 287 15 232 1.91e-17 85.5
Msa0212490 MtrunA17_Chr1g0192821 32.065 184 117 5 17 196 122 301 7.79e-17 83.6
Msa0212490 MtrunA17_Chr4g0074871 28.163 245 164 4 33 274 292 527 6.92e-20 93.6
Msa0212490 MtrunA17_Chr4g0066851 26.860 242 148 9 26 249 158 388 1.08e-17 86.3
Msa0212490 MtrunA17_Chr4g0066851 25.431 232 158 7 23 242 97 325 2.29e-15 79.0
Msa0212490 MtrunA17_Chr4g0066851 25.000 244 156 8 61 291 83 312 6.56e-15 77.4
Msa0212490 MtrunA17_Chr1g0207821 28.788 264 159 9 38 275 87 347 2.72e-16 82.0
Msa0212490 MtrunA17_Chr2g0286241 26.724 232 155 7 23 242 89 317 4.93e-16 81.3
Msa0212490 MtrunA17_Chr2g0286241 27.136 199 124 6 26 213 150 338 6.95e-16 80.5
Msa0212490 MtrunA17_Chr7g0272641 29.442 197 130 6 26 217 245 437 1.26e-15 79.7
Msa0212490 MtrunA17_Chr7g0272641 25.097 259 175 5 22 272 186 433 1.21e-14 76.6
Msa0212490 MtrunA17_Chr7g0272641 23.616 271 172 13 54 312 170 417 1.63e-11 66.6
Msa0212490 MtrunA17_Chr1g0198221 27.863 262 158 10 63 309 8 253 2.07e-15 78.6
Msa0212490 MtrunA17_Chr1g0198221 23.102 303 180 10 14 286 11 290 1.15e-12 70.1
Msa0212490 MtrunA17_Chr5g0426891 30.714 140 93 4 347 484 3 140 3.61e-15 76.6
Msa0212490 MtrunA17_Chr1g0197401 29.143 175 117 5 22 193 88 258 4.22e-15 77.8
Msa0212490 MtrunA17_Chr1g0197401 23.984 246 151 10 62 288 15 243 2.79e-11 65.9
Msa0212490 MtrunA17_Chr1g0197401 24.681 235 161 4 22 242 27 259 4.06e-11 65.1
Msa0212490 MtrunA17_Chr1g0179801 32.000 150 94 3 347 493 26 170 2.13e-14 74.7
Msa0212490 MtrunA17_Chr8g0345831 32.353 102 67 1 383 484 41 140 2.26e-13 71.2
Msa0212490 MtrunA17_Chr7g0242551 30.201 149 97 4 343 487 10 155 3.66e-13 70.9
Msa0212490 MtrunA17_Chr4g0002171 28.063 253 145 12 22 243 120 366 5.91e-13 70.9
Msa0212490 MtrunA17_Chr4g0006371 26.452 155 100 3 343 484 9 162 4.95e-12 67.4
Msa0212490 MtrunA17_Chr3g0093761 30.714 140 87 6 347 483 17 149 2.21e-11 65.5
Msa0212490 MtrunA17_Chr3g0126741 27.451 153 95 5 336 484 21 161 4.54e-11 64.3
Msa0212490 MtrunA17_Chr8g0375571 30.556 144 90 5 347 487 10 146 4.63e-11 64.3
Msa0212490 MtrunA17_Chr3g0093741 26.619 139 95 4 347 483 17 150 9.97e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0212490 AT3G07720.1 70.740 311 91 0 12 322 12 322 2.43e-166 473
Msa0212490 AT5G48180.1 53.750 320 146 2 11 330 9 326 2.28e-121 358
Msa0212490 AT3G16400.2 49.538 325 159 3 4 324 144 467 9.98e-107 326
Msa0212490 AT3G16400.1 49.538 325 159 3 4 324 144 467 9.98e-107 326
Msa0212490 AT3G16410.1 49.045 314 158 2 12 324 304 616 2.70e-104 325
Msa0212490 AT2G33070.1 49.841 315 156 2 11 324 155 468 1.61e-103 318
Msa0212490 AT2G33070.2 49.841 315 156 2 11 324 155 468 1.61e-103 318
Msa0212490 AT2G33070.3 50.160 313 154 2 13 324 159 470 4.19e-103 317
Msa0212490 AT3G16390.2 49.221 321 155 5 8 324 148 464 1.17e-100 310
Msa0212490 AT3G16390.1 49.221 321 155 5 8 324 148 464 1.17e-100 310
Msa0212490 AT1G54040.3 45.399 326 156 6 17 324 11 332 3.08e-91 281
Msa0212490 AT1G54040.2 45.399 326 156 6 17 324 17 338 4.87e-91 281
Msa0212490 AT1G54040.1 45.038 262 123 5 80 324 1 258 1.25e-71 228
Msa0212490 AT2G25450.1 52.727 165 76 1 329 493 2 164 2.00e-53 184
Msa0212490 AT1G06620.2 49.068 161 81 1 333 493 12 171 5.27e-50 173
Msa0212490 AT2G30840.2 50.000 164 80 2 332 493 5 168 3.03e-49 171
Msa0212490 AT1G06620.1 49.068 161 81 1 333 493 12 171 5.20e-49 172
Msa0212490 AT2G30840.3 50.000 164 80 2 332 493 5 168 1.73e-48 171
Msa0212490 AT2G30830.1 49.693 163 78 2 332 493 5 164 1.78e-48 171
Msa0212490 AT2G30840.1 50.000 164 80 2 332 493 5 168 2.44e-48 171
Msa0212490 AT1G03410.2 46.012 163 86 2 333 493 5 167 1.45e-45 163
Msa0212490 AT1G04350.1 46.012 163 84 2 332 493 6 165 2.93e-45 162
Msa0212490 AT1G03410.1 46.012 163 86 2 333 493 42 204 2.98e-45 163
Msa0212490 AT5G59540.2 44.186 172 94 2 324 493 1 172 5.20e-45 159
Msa0212490 AT1G06650.1 44.509 173 79 3 331 493 9 174 5.55e-45 160
Msa0212490 AT1G06650.2 44.509 173 79 3 331 493 9 174 2.27e-44 160
Msa0212490 AT5G59540.1 44.186 172 94 2 324 493 1 172 3.51e-44 159
Msa0212490 AT1G06640.3 43.017 179 85 3 325 493 3 174 3.56e-44 157
Msa0212490 AT1G06640.2 43.017 179 85 3 325 493 3 174 1.03e-43 157
Msa0212490 AT3G61400.2 44.578 166 86 2 333 493 10 174 2.70e-43 155
Msa0212490 AT1G06640.1 43.017 179 85 3 325 493 3 174 3.18e-43 157
Msa0212490 AT3G61400.1 44.578 166 86 2 333 493 10 174 1.18e-42 155
Msa0212490 AT1G06645.1 45.399 163 82 3 329 486 20 180 4.95e-42 154
Msa0212490 AT5G59530.1 45.882 170 87 4 327 493 3 170 7.86e-42 153
Msa0212490 AT1G03400.1 41.615 161 86 1 333 493 5 157 7.99e-42 153
Msa0212490 AT1G03400.2 41.615 161 86 1 333 493 5 157 1.96e-41 152
Msa0212490 AT5G43450.2 39.881 168 98 2 327 493 3 168 9.02e-37 137
Msa0212490 AT5G43450.1 39.881 168 98 2 327 493 3 168 5.30e-36 137
Msa0212490 AT5G43440.2 37.572 173 103 4 324 493 1 171 6.82e-35 132
Msa0212490 AT5G43440.1 37.572 173 103 4 324 493 1 171 4.44e-34 132
Msa0212490 AT1G18610.1 28.869 336 209 8 21 339 23 345 9.92e-32 128
Msa0212490 AT1G18610.1 28.679 265 163 7 68 322 18 266 1.02e-17 86.7
Msa0212490 AT1G18610.2 28.869 336 209 8 21 339 23 345 9.92e-32 128
Msa0212490 AT1G18610.2 28.679 265 163 7 68 322 18 266 1.02e-17 86.7
Msa0212490 AT1G04380.2 35.882 170 90 3 324 493 1 151 1.05e-31 123
Msa0212490 AT1G04380.1 35.882 170 90 3 324 493 1 151 5.78e-31 123
Msa0212490 AT1G74150.3 26.005 373 243 8 14 376 13 362 6.55e-29 120
Msa0212490 AT1G74150.3 27.306 271 171 7 64 324 11 265 4.44e-16 81.3
Msa0212490 AT1G74150.1 26.203 374 242 9 14 376 13 363 7.05e-28 117
Msa0212490 AT1G74150.1 27.306 271 171 7 64 324 11 265 3.74e-16 81.6
Msa0212490 AT1G74150.2 26.203 374 242 9 14 376 13 363 7.72e-28 117
Msa0212490 AT1G74150.2 27.306 271 171 7 64 324 11 265 4.65e-16 81.3
Msa0212490 AT1G74150.4 25.610 328 213 7 58 376 42 347 8.50e-23 102
Msa0212490 AT1G74150.4 26.222 225 155 6 17 232 53 275 1.27e-14 76.6
Msa0212490 AT5G18590.2 28.390 236 152 7 26 249 140 370 5.12e-19 90.9
Msa0212490 AT5G18590.2 26.407 231 157 5 23 242 79 307 1.78e-16 82.8
Msa0212490 AT5G18590.2 25.087 287 177 10 18 290 32 294 3.92e-15 78.6
Msa0212490 AT5G18590.1 28.390 236 152 7 26 249 140 370 5.12e-19 90.9
Msa0212490 AT5G18590.1 26.407 231 157 5 23 242 79 307 1.78e-16 82.8
Msa0212490 AT5G18590.1 25.087 287 177 10 18 290 32 294 3.92e-15 78.6
Msa0212490 AT3G05420.1 23.961 409 267 11 22 407 183 570 3.59e-17 85.1
Msa0212490 AT3G05420.1 29.730 185 123 5 12 193 233 413 3.26e-15 79.0
Msa0212490 AT3G05420.1 25.448 279 170 13 50 312 163 419 2.01e-12 70.1
Msa0212490 AT3G05420.2 23.961 409 267 11 22 407 184 571 4.00e-17 84.7
Msa0212490 AT3G05420.2 29.730 185 123 5 12 193 234 414 3.41e-15 79.0
Msa0212490 AT3G05420.2 25.448 279 170 13 50 312 164 420 2.03e-12 70.1
Msa0212490 AT3G13610.1 32.394 142 85 5 347 485 26 159 9.49e-17 82.0
Msa0212490 AT4G04670.1 26.786 224 157 4 22 242 324 543 2.91e-16 82.4
Msa0212490 AT4G04670.1 28.000 175 121 3 71 242 321 493 2.98e-11 66.6
Msa0212490 AT5G50310.1 26.718 262 157 8 32 271 94 342 2.78e-15 79.0
Msa0212490 AT5G04420.2 28.571 231 151 8 22 242 101 327 7.89e-15 77.4
Msa0212490 AT5G04420.1 28.571 231 151 8 22 242 101 327 7.89e-15 77.4
Msa0212490 AT5G04420.3 28.571 231 151 8 22 242 101 327 7.89e-15 77.4
Msa0212490 AT2G36360.3 27.586 261 160 8 63 309 8 253 1.32e-14 76.6
Msa0212490 AT2G36360.4 27.586 261 160 8 63 309 8 253 1.32e-14 76.6
Msa0212490 AT2G36360.2 27.586 261 160 8 63 309 8 253 1.36e-14 76.6
Msa0212490 AT2G36360.1 27.586 261 160 8 63 309 8 253 1.36e-14 76.6
Msa0212490 AT2G36690.2 31.126 151 95 3 347 493 20 165 3.35e-14 74.7
Msa0212490 AT2G36690.1 31.126 151 95 3 347 493 20 165 3.35e-14 74.7
Msa0212490 AT1G55290.1 29.801 151 95 5 347 494 25 167 3.84e-14 74.3
Msa0212490 AT5G27630.2 25.379 264 173 7 22 272 184 436 7.72e-14 74.3
Msa0212490 AT5G27630.2 24.561 285 175 13 49 312 155 420 1.71e-11 67.0
Msa0212490 AT5G27630.4 26.136 264 171 8 22 272 184 436 1.02e-13 74.3
Msa0212490 AT5G27630.4 25.614 285 172 15 49 312 155 420 1.43e-11 67.4
Msa0212490 AT5G27630.3 25.758 264 172 8 22 272 184 436 1.05e-13 74.3
Msa0212490 AT5G27630.3 25.614 285 172 15 49 312 155 420 1.40e-11 67.4
Msa0212490 AT5G27630.1 26.136 264 171 8 22 272 184 436 1.14e-13 73.9
Msa0212490 AT5G27630.1 25.614 285 172 15 49 312 155 420 1.60e-11 67.4
Msa0212490 AT1G51550.1 27.888 251 146 12 23 243 123 368 8.14e-13 70.9
Msa0212490 AT5G05600.2 27.333 150 106 3 328 476 7 154 1.78e-12 68.6
Msa0212490 AT2G36360.5 26.667 270 160 9 63 309 8 262 2.52e-12 69.3
Msa0212490 AT1G68050.1 27.928 222 141 11 57 267 287 500 4.86e-12 68.9
Msa0212490 AT1G68050.1 26.488 336 204 18 17 328 299 615 1.61e-11 67.0
Msa0212490 AT5G05600.1 26.582 158 113 3 328 484 7 162 8.13e-12 67.4
Msa0212490 AT2G44800.1 25.166 151 112 1 334 484 2 151 2.32e-11 65.9
Msa0212490 AT2G38240.1 29.878 164 93 6 343 492 7 162 2.74e-11 65.5
Msa0212490 AT3G12900.1 28.947 152 100 6 347 495 21 167 3.51e-11 65.1
Msa0212490 AT4G10490.1 29.412 102 70 1 383 484 41 140 3.85e-11 65.1
Msa0212490 AT5G24530.1 28.814 118 69 2 385 492 39 151 5.89e-11 64.3

Find 146 sgRNAs with CRISPR-Local

Find 446 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGGAAGGCTCAATGATTTA+TGG 0.247369 2_1:-54596956 Msa0212490:CDS
GTCTTGATAAAGAGTAAAAT+TGG 0.254512 2_1:+54595643 None:intergenic
TCCTCACCTTGGCATCTTGC+TGG 0.259911 2_1:+54595711 None:intergenic
GGAGAAACCATCTATGTATT+TGG 0.275442 2_1:-54597146 Msa0212490:CDS
TGGAATTCCAGTTCATGTTT+TGG 0.293851 2_1:-54595765 Msa0212490:CDS
CGTGGGTGGTGCGCATTTGC+CGG 0.322365 2_1:-54596537 Msa0212490:CDS
TTGACACTAAAACCAACAAT+TGG 0.329490 2_1:-54597079 Msa0212490:CDS
TTCAAAATGCAAGTGAGAAA+TGG 0.333502 2_1:-54595811 Msa0212490:CDS
GGTGGTAGTTCATCAGCTTT+AGG 0.343905 2_1:+54595569 None:intergenic
TCAAAATGCAAGTGAGAAAT+GGG 0.362845 2_1:-54595810 Msa0212490:CDS
ACGTGTAACTTGTTATCAAC+GGG 0.364996 2_1:+54597257 None:intergenic
GGGAAACACATAATTGTATA+TGG 0.366421 2_1:-54596696 Msa0212490:CDS
GTCCAAGGACTCATAGAAAA+TGG 0.369194 2_1:-54595986 Msa0212490:CDS
ATCTCATCCAAAACATGAAC+TGG 0.379287 2_1:+54595758 None:intergenic
GTCCCTACAATTGACTTAAC+AGG 0.381724 2_1:-54595878 Msa0212490:CDS
GCGCACCACCCACGTGGCCC+TGG 0.395028 2_1:+54596546 None:intergenic
TGGTCAGTAGCCGATGTATC+CGG 0.396432 2_1:-54597212 Msa0212490:CDS
TCTTCCACCAAATACATAGA+TGG 0.400451 2_1:+54597139 None:intergenic
ATCAAGACCAATCTGCTGAT+TGG 0.402608 2_1:-54595628 Msa0212490:CDS
TGATTTCAAGTGGAGATGTT+GGG 0.404218 2_1:-54597052 Msa0212490:CDS
ATTCCTGTTAAGTCAATTGT+AGG 0.415919 2_1:+54595875 None:intergenic
CCCTGGGCCACTGTTAGGCC+CGG 0.416654 2_1:+54596861 None:intergenic
TTCTTTCAAGTAATAAATCA+TGG 0.422804 2_1:-54595785 Msa0212490:CDS
AGGAAGGCTCAATGATTTAT+GGG 0.428980 2_1:-54596955 Msa0212490:CDS
TTGTTTCAGCTTGATCAAAC+AGG 0.431334 2_1:-54597368 Msa0212490:CDS
TTGATTTCAAGTGGAGATGT+TGG 0.441999 2_1:-54597053 Msa0212490:CDS
ACGTGGAGGCGGTGTGCTCC+CGG 0.451297 2_1:+54597193 None:intergenic
CCCATGTGACCTTGGTCACT+AGG 0.452252 2_1:+54596660 None:intergenic
TGACGTACATTTCTTCGATC+TGG 0.453055 2_1:-54596796 Msa0212490:CDS
TTGCAAGGGAAGAGGTGGGC+CGG 0.453359 2_1:-54596880 Msa0212490:CDS
ACAACTTCATCTCTCAAAAC+AGG 0.453932 2_1:+54595842 None:intergenic
CTGACCATGTCAAGGTATCT+AGG 0.455547 2_1:+54597228 None:intergenic
TGAAATCAAGGCCCAATTGT+TGG 0.455604 2_1:+54597067 None:intergenic
GCCGGGCCTAACAGTGGCCC+AGG 0.464383 2_1:-54596862 Msa0212490:CDS
TTGGACGATAAGGTGGAATC+AGG 0.467150 2_1:-54596576 Msa0212490:CDS
TAAGCCCACTTGTTTCCACT+TGG 0.467507 2_1:+54596757 None:intergenic
TGACACTAAAACCAACAATT+GGG 0.468892 2_1:-54597078 Msa0212490:CDS
TTCGGTGGCTGTGGAGTGGC+AGG 0.473551 2_1:-54596975 Msa0212490:CDS
TTCATCAGCTTTAGGAGGAT+CGG 0.473721 2_1:+54595577 None:intergenic
TGCAAGGGAAGAGGTGGGCC+GGG 0.474673 2_1:-54596879 Msa0212490:CDS
TCATCAGCTTTAGGAGGATC+GGG 0.477138 2_1:+54595578 None:intergenic
ATGGACGAGGTTGGACGATA+AGG 0.477851 2_1:-54596586 Msa0212490:CDS
CAAGAGGGATTATTAGTGTA+TGG 0.478956 2_1:-54596498 Msa0212490:CDS
CTTCCCTTGCAACTTTCACC+AGG 0.479391 2_1:+54596891 None:intergenic
AACATCTCCACTTGAAATCA+AGG 0.485982 2_1:+54597055 None:intergenic
TCACATGCTATTGCCGTAGT+AGG 0.488119 2_1:-54597323 Msa0212490:CDS
AACACATAATTGTATATGGT+GGG 0.491224 2_1:-54596692 Msa0212490:CDS
GGACAGAAGGTCTATGCATT+CGG 0.492484 2_1:-54597302 Msa0212490:CDS
GAATTTGATGAGTCAAAGGT+TGG 0.494931 2_1:-54596010 Msa0212490:CDS
TTTATGGGCCTTTGATGTTG+TGG 0.497159 2_1:-54596940 Msa0212490:CDS
CCCTAGTGACCAAGGTCACA+TGG 0.498673 2_1:-54596661 Msa0212490:CDS
TGTGTATGGTTTCGCTGGAA+TGG 0.500991 2_1:-54596826 Msa0212490:CDS
GTGGAATCAGGTGATCATCC+AGG 0.503333 2_1:-54596564 Msa0212490:CDS
TGGGTGGAATTTCCATCTCC+TGG 0.503407 2_1:-54596909 Msa0212490:CDS
ATCATCCAGGGCCACGTGGG+TGG 0.507358 2_1:-54596551 Msa0212490:CDS
TTGCAACTTTCACCAGGAGA+TGG 0.508173 2_1:+54596897 None:intergenic
GAACAATCTAATATCAATCA+TGG 0.512601 2_1:-54595932 Msa0212490:CDS
GACCAAGGTCACATGGGTGC+TGG 0.513231 2_1:-54596654 Msa0212490:CDS
AACATACACACGTCGGTCAT+CGG 0.519773 2_1:+54596998 None:intergenic
GGTCAGTAGCCGATGTATCC+GGG 0.521034 2_1:-54597211 Msa0212490:CDS
AAAGGAATTTGATGAGTCAA+AGG 0.522155 2_1:-54596014 Msa0212490:CDS
TGTCCCTCCAATCAGCAGAT+TGG 0.523116 2_1:+54595621 None:intergenic
CCATGTGACCTTGGTCACTA+GGG 0.525844 2_1:+54596661 None:intergenic
AAGCCCACTTGTTTCCACTT+GGG 0.532207 2_1:+54596758 None:intergenic
TGGGTTGTGTATGGTTTCGC+TGG 0.532785 2_1:-54596831 Msa0212490:CDS
GCAAGATGCCAAGGTGAGGA+AGG 0.534102 2_1:-54595708 Msa0212490:CDS
ATGGAGTGGTAGCTACGGTT+AGG 0.534804 2_1:+54597026 None:intergenic
ACGTCGGTCATCGGCAGTCA+TGG 0.536504 2_1:+54597007 None:intergenic
GACACTATCATGGACGAGGT+TGG 0.537344 2_1:-54596595 Msa0212490:CDS
CACGTGTAACTTGTTATCAA+CGG 0.539910 2_1:+54597256 None:intergenic
AAGACCAATCTGCTGATTGG+AGG 0.540908 2_1:-54595625 Msa0212490:CDS
TTGGCTGCCTCGGCTAGCAC+CGG 0.541808 2_1:+54596518 None:intergenic
GAGTCAAAGGTTGGTGTCCA+AGG 0.541962 2_1:-54596001 Msa0212490:CDS
CTTGCCATCCACAACATCAA+AGG 0.543652 2_1:+54596932 None:intergenic
ATAATCCCTCTTGGCTGCCT+CGG 0.546368 2_1:+54596508 None:intergenic
TGGGCCTTTGATGTTGTGGA+TGG 0.546782 2_1:-54596936 Msa0212490:CDS
CTCTCAAAACAGGATCATCA+TGG 0.547021 2_1:+54595852 None:intergenic
GACCAGCACCCATGTGACCT+TGG 0.549010 2_1:+54596652 None:intergenic
GGTGAAAGTTGCAAGGGAAG+AGG 0.549168 2_1:-54596888 Msa0212490:CDS
TCATCAAGCCTGTCGTTGCT+AGG 0.553094 2_1:+54596465 None:intergenic
GAAAGTTGCAAGGGAAGAGG+TGG 0.555227 2_1:-54596885 Msa0212490:CDS
AATTGGGCCTTGATTTCAAG+TGG 0.556457 2_1:-54597062 Msa0212490:CDS
GAAACCATCTATGTATTTGG+TGG 0.556915 2_1:-54597143 Msa0212490:CDS
AACAAGTTGAAAACACACTA+CGG 0.558479 2_1:+54596724 None:intergenic
GCTAGCCGAGGCAGCCAAGA+GGG 0.561545 2_1:-54596513 Msa0212490:CDS
TTGATGTTGTGGATGGCAAG+TGG 0.565683 2_1:-54596929 Msa0212490:CDS
TGGTTTCGCTGGAATGGAAG+TGG 0.566273 2_1:-54596820 Msa0212490:CDS
ATCTCCTGGTGAAAGTTGCA+AGG 0.567843 2_1:-54596895 Msa0212490:CDS
CATACACTAATAATCCCTCT+TGG 0.571128 2_1:+54596499 None:intergenic
TTCCTGTTAAGTCAATTGTA+GGG 0.572686 2_1:+54595876 None:intergenic
TGATGTTGTGGATGGCAAGT+GGG 0.578551 2_1:-54596928 Msa0212490:CDS
GTGGCTGTGGAGTGGCAGGA+AGG 0.583072 2_1:-54596971 Msa0212490:CDS
AGACCAATCTGCTGATTGGA+GGG 0.584002 2_1:-54595624 Msa0212490:CDS
ATAGTACTCCTTCCTCACCT+TGG 0.587132 2_1:+54595700 None:intergenic
GCAACTCACCTAGCAACGAC+AGG 0.588373 2_1:-54596473 Msa0212490:CDS
CCGGGCCTAACAGTGGCCCA+GGG 0.590476 2_1:-54596861 Msa0212490:CDS
TAAAGCTGATGAACTACCAC+CGG 0.591747 2_1:-54595567 Msa0212490:intron
AGCACACCGCCTCCACGTGT+TGG 0.592914 2_1:-54597188 Msa0212490:CDS
AGGTGGGCCGGGCCTAACAG+TGG 0.595141 2_1:-54596868 Msa0212490:CDS
GAAAACACACTACGGGCCGT+TGG 0.595615 2_1:+54596732 None:intergenic
ACAAGTTGAAAACACACTAC+GGG 0.597063 2_1:+54596725 None:intergenic
AAACACATAATTGTATATGG+TGG 0.598952 2_1:-54596693 Msa0212490:CDS
GACGAGGTTGGACGATAAGG+TGG 0.598960 2_1:-54596583 Msa0212490:CDS
ACACATAATTGTATATGGTG+GGG 0.601078 2_1:-54596691 Msa0212490:CDS
CGGTGTGCTCCCGGATACAT+CGG 0.602948 2_1:+54597202 None:intergenic
GATCAAACAGGAATCTTGCA+AGG 0.605041 2_1:-54597356 Msa0212490:CDS
GAGTGGTAGCTACGGTTAGG+AGG 0.607165 2_1:+54597029 None:intergenic
ACTAACTTTGAGCAAGAGCA+AGG 0.608068 2_1:+54596433 None:intergenic
GGTAGTTCATCAGCTTTAGG+AGG 0.608431 2_1:+54595572 None:intergenic
AACAAGTGGGCTTAAACCAA+CGG 0.609427 2_1:-54596748 Msa0212490:CDS
TAGACACGGAGACACTATCA+TGG 0.609879 2_1:-54596605 Msa0212490:CDS
GTGACACCAACACGTGGAGG+CGG 0.609943 2_1:+54597182 None:intergenic
GCATTTGCCGGTGCTAGCCG+AGG 0.611791 2_1:-54596525 Msa0212490:CDS
GAAATAGACCCTAGTGACCA+AGG 0.612642 2_1:-54596669 Msa0212490:CDS
CGGAGACACTATCATGGACG+AGG 0.615534 2_1:-54596599 Msa0212490:CDS
GGTGTCACGATGGCTGCAGT+TGG 0.615550 2_1:-54597167 Msa0212490:CDS
TGGAATCAGGTGATCATCCA+GGG 0.616772 2_1:-54596563 Msa0212490:CDS
ATAGACCTTCTGTCCTACTA+CGG 0.620524 2_1:+54597310 None:intergenic
TTGTTATCAACGGGGACACG+TGG 0.620860 2_1:+54597266 None:intergenic
ACCAGCAAGATGCCAAGGTG+AGG 0.623160 2_1:-54595712 Msa0212490:CDS
ATTTCACCAGCAAGATGCCA+AGG 0.623273 2_1:-54595717 Msa0212490:CDS
TCTCCTGGTGAAAGTTGCAA+GGG 0.623404 2_1:-54596894 Msa0212490:CDS
TGTTGTGGATGGCAAGTGGG+TGG 0.625429 2_1:-54596925 Msa0212490:CDS
TGGGCCCAAGTGGAAACAAG+TGG 0.628859 2_1:-54596762 Msa0212490:CDS
GTGATCATCCAGGGCCACGT+GGG 0.629702 2_1:-54596554 Msa0212490:CDS
GCCATCGTGACACCAACACG+TGG 0.638626 2_1:+54597176 None:intergenic
CAGTCATGGAGTGGTAGCTA+CGG 0.640561 2_1:+54597021 None:intergenic
GGTGATCATCCAGGGCCACG+TGG 0.641702 2_1:-54596555 Msa0212490:CDS
TATTGCCGTAGTAGGACAGA+AGG 0.645786 2_1:-54597315 Msa0212490:CDS
ATCGGCTACTGACCATGTCA+AGG 0.646523 2_1:+54597220 None:intergenic
CCTAGTGACCAAGGTCACAT+GGG 0.649054 2_1:-54596660 Msa0212490:CDS
GGTCATCGGCAGTCATGGAG+TGG 0.651183 2_1:+54597012 None:intergenic
TGTTCACAATAGAACATGCG+TGG 0.652888 2_1:+54595950 None:intergenic
GAGGGATTATTAGTGTATGG+TGG 0.654652 2_1:-54596495 Msa0212490:CDS
TCCACGTGTTGGTGTCACGA+TGG 0.660694 2_1:-54597177 Msa0212490:CDS
TGCTAGCCGAGGCAGCCAAG+AGG 0.662151 2_1:-54596514 Msa0212490:CDS
GGGCCCAAGTGGAAACAAGT+GGG 0.666793 2_1:-54596761 Msa0212490:CDS
CAAAATGCAAGTGAGAAATG+GGG 0.669107 2_1:-54595809 Msa0212490:CDS
AAAGTTGCAAGGGAAGAGGT+GGG 0.669531 2_1:-54596884 Msa0212490:CDS
ATCGTGACACCAACACGTGG+AGG 0.680472 2_1:+54597179 None:intergenic
CAGAAGGTCTATGCATTCGG+CGG 0.680867 2_1:-54597299 Msa0212490:CDS
GCAAATGCGCACCACCCACG+TGG 0.684596 2_1:+54596540 None:intergenic
TGAGCTTTATGCATTAGACA+CGG 0.693180 2_1:-54596619 Msa0212490:CDS
CGTGTAACTTGTTATCAACG+GGG 0.719522 2_1:+54597258 None:intergenic
ACGACCTAGATACCTTGACA+TGG 0.737782 2_1:-54597232 Msa0212490:CDS
CACCGAAAACATACACACGT+CGG 0.744843 2_1:+54596991 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAACATATATTTAAGCTA+AGG + chr2_1:54596235-54596254 None:intergenic 15.0%
!! TAAAATTAAAATTATGTAGC+AGG - chr2_1:54596290-54596309 Msa0212490:intron 15.0%
!! TAAATAACAAAGGATAATAT+TGG + chr2_1:54597167-54597186 None:intergenic 15.0%
!! AATGAGATGTTAAATTAATA+AGG - chr2_1:54597209-54597228 Msa0212490:CDS 15.0%
!! AATAACATATATTTAAGCTA+AGG + chr2_1:54596235-54596254 None:intergenic 15.0%
!! TAAAATTAAAATTATGTAGC+AGG - chr2_1:54596290-54596309 Msa0212490:intron 15.0%
!! TAAATAACAAAGGATAATAT+TGG + chr2_1:54597167-54597186 None:intergenic 15.0%
!! AATGAGATGTTAAATTAATA+AGG - chr2_1:54597209-54597228 Msa0212490:CDS 15.0%
!!! TGTTTTCAACTTGTTTAATT+GGG - chr2_1:54595644-54595663 Msa0212490:CDS 20.0%
!!! TTCTTTCAAGTAATAAATCA+TGG - chr2_1:54596575-54596594 Msa0212490:CDS 20.0%
!! CTTGAATAAAACTATGAAAT+TGG + chr2_1:54596858-54596877 None:intergenic 20.0%
!!! CAATTTCATAGTTTTATTCA+AGG - chr2_1:54596856-54596875 Msa0212490:CDS 20.0%
!!! TGTTTTTTTCATTTACATGA+GGG + chr2_1:54597042-54597061 None:intergenic 20.0%
!!! TTGTTTTTTTCATTTACATG+AGG + chr2_1:54597043-54597062 None:intergenic 20.0%
!!! TTATCCTTTGTTATTTATTG+CGG - chr2_1:54597170-54597189 Msa0212490:CDS 20.0%
!!! AAGTCATACTTTTACTATAA+TGG + chr2_1:54597235-54597254 None:intergenic 20.0%
!!! TGTTTTCAACTTGTTTAATT+GGG - chr2_1:54595644-54595663 Msa0212490:CDS 20.0%
!!! TTCTTTCAAGTAATAAATCA+TGG - chr2_1:54596575-54596594 Msa0212490:CDS 20.0%
!! CTTGAATAAAACTATGAAAT+TGG + chr2_1:54596858-54596877 None:intergenic 20.0%
!!! CAATTTCATAGTTTTATTCA+AGG - chr2_1:54596856-54596875 Msa0212490:CDS 20.0%
!!! TGTTTTTTTCATTTACATGA+GGG + chr2_1:54597042-54597061 None:intergenic 20.0%
!!! TTGTTTTTTTCATTTACATG+AGG + chr2_1:54597043-54597062 None:intergenic 20.0%
!!! TTATCCTTTGTTATTTATTG+CGG - chr2_1:54597170-54597189 Msa0212490:CDS 20.0%
!!! AAGTCATACTTTTACTATAA+TGG + chr2_1:54597235-54597254 None:intergenic 20.0%
!!! GTGTTTTCAACTTGTTTAAT+TGG - chr2_1:54595643-54595662 Msa0212490:CDS 25.0%
! AAACACATAATTGTATATGG+TGG - chr2_1:54595667-54595686 Msa0212490:CDS 25.0%
! AACACATAATTGTATATGGT+GGG - chr2_1:54595668-54595687 Msa0212490:CDS 25.0%
! AACATATATTTAAGCTAAGG+CGG + chr2_1:54596232-54596251 None:intergenic 25.0%
!! CTTGTTATGAAATACAAGTA+CGG + chr2_1:54596267-54596286 None:intergenic 25.0%
! GAACAATCTAATATCAATCA+TGG - chr2_1:54596428-54596447 Msa0212490:intron 25.0%
!!! GGAAAGATAAACAACTTTTT+TGG + chr2_1:54596699-54596718 None:intergenic 25.0%
! GTCTTGATAAAGAGTAAAAT+TGG + chr2_1:54596720-54596739 None:intergenic 25.0%
! GAATAAAACTATGAAATTGG+TGG + chr2_1:54596855-54596874 None:intergenic 25.0%
!!! TCATTTGTAAGTTTTAGTGA+AGG + chr2_1:54596984-54597003 None:intergenic 25.0%
!! GAAACAATTATTGATTGTCT+TGG - chr2_1:54597270-54597289 Msa0212490:CDS 25.0%
! TCAAAGAGTGACAATTAAAA+AGG - chr2_1:54597306-54597325 Msa0212490:CDS 25.0%
! CAAAGAGTGACAATTAAAAA+GGG - chr2_1:54597307-54597326 Msa0212490:CDS 25.0%
!!! GTGTTTTCAACTTGTTTAAT+TGG - chr2_1:54595643-54595662 Msa0212490:CDS 25.0%
! AAACACATAATTGTATATGG+TGG - chr2_1:54595667-54595686 Msa0212490:CDS 25.0%
! AACACATAATTGTATATGGT+GGG - chr2_1:54595668-54595687 Msa0212490:CDS 25.0%
! AACATATATTTAAGCTAAGG+CGG + chr2_1:54596232-54596251 None:intergenic 25.0%
!! CTTGTTATGAAATACAAGTA+CGG + chr2_1:54596267-54596286 None:intergenic 25.0%
! GAACAATCTAATATCAATCA+TGG - chr2_1:54596428-54596447 Msa0212490:intron 25.0%
!!! GGAAAGATAAACAACTTTTT+TGG + chr2_1:54596699-54596718 None:intergenic 25.0%
! GTCTTGATAAAGAGTAAAAT+TGG + chr2_1:54596720-54596739 None:intergenic 25.0%
! GAATAAAACTATGAAATTGG+TGG + chr2_1:54596855-54596874 None:intergenic 25.0%
!!! TCATTTGTAAGTTTTAGTGA+AGG + chr2_1:54596984-54597003 None:intergenic 25.0%
!! GAAACAATTATTGATTGTCT+TGG - chr2_1:54597270-54597289 Msa0212490:CDS 25.0%
! TCAAAGAGTGACAATTAAAA+AGG - chr2_1:54597306-54597325 Msa0212490:CDS 25.0%
! CAAAGAGTGACAATTAAAAA+GGG - chr2_1:54597307-54597326 Msa0212490:CDS 25.0%
TTGACACTAAAACCAACAAT+TGG - chr2_1:54595281-54595300 Msa0212490:intron 30.0%
TGACACTAAAACCAACAATT+GGG - chr2_1:54595282-54595301 Msa0212490:intron 30.0%
! AACAAGTTGAAAACACACTA+CGG + chr2_1:54595639-54595658 None:intergenic 30.0%
GGGAAACACATAATTGTATA+TGG - chr2_1:54595664-54595683 Msa0212490:CDS 30.0%
ACACATAATTGTATATGGTG+GGG - chr2_1:54595669-54595688 Msa0212490:CDS 30.0%
TGACAGAAAAAGTGAACTAA+AGG - chr2_1:54596328-54596347 Msa0212490:intron 30.0%
AAAGGAATTTGATGAGTCAA+AGG - chr2_1:54596346-54596365 Msa0212490:intron 30.0%
TTCCTGTTAAGTCAATTGTA+GGG + chr2_1:54596487-54596506 None:intergenic 30.0%
ATTCCTGTTAAGTCAATTGT+AGG + chr2_1:54596488-54596507 None:intergenic 30.0%
TTCAAAATGCAAGTGAGAAA+TGG - chr2_1:54596549-54596568 Msa0212490:CDS 30.0%
TCAAAATGCAAGTGAGAAAT+GGG - chr2_1:54596550-54596569 Msa0212490:CDS 30.0%
AGTTTGACTAGTGATTATTC+CGG - chr2_1:54596920-54596939 Msa0212490:CDS 30.0%
AAGAGACACTTAAAAAGGAA+CGG + chr2_1:54597075-54597094 None:intergenic 30.0%
!!! TCCTTTTTAAGTGTCTCTTT+TGG - chr2_1:54597076-54597095 Msa0212490:CDS 30.0%
TCCAAAAGAGACACTTAAAA+AGG + chr2_1:54597080-54597099 None:intergenic 30.0%
TTGACACTAAAACCAACAAT+TGG - chr2_1:54595281-54595300 Msa0212490:intron 30.0%
TGACACTAAAACCAACAATT+GGG - chr2_1:54595282-54595301 Msa0212490:intron 30.0%
! AACAAGTTGAAAACACACTA+CGG + chr2_1:54595639-54595658 None:intergenic 30.0%
GGGAAACACATAATTGTATA+TGG - chr2_1:54595664-54595683 Msa0212490:CDS 30.0%
ACACATAATTGTATATGGTG+GGG - chr2_1:54595669-54595688 Msa0212490:CDS 30.0%
TGACAGAAAAAGTGAACTAA+AGG - chr2_1:54596328-54596347 Msa0212490:intron 30.0%
AAAGGAATTTGATGAGTCAA+AGG - chr2_1:54596346-54596365 Msa0212490:intron 30.0%
TTCCTGTTAAGTCAATTGTA+GGG + chr2_1:54596487-54596506 None:intergenic 30.0%
ATTCCTGTTAAGTCAATTGT+AGG + chr2_1:54596488-54596507 None:intergenic 30.0%
TTCAAAATGCAAGTGAGAAA+TGG - chr2_1:54596549-54596568 Msa0212490:CDS 30.0%
TCAAAATGCAAGTGAGAAAT+GGG - chr2_1:54596550-54596569 Msa0212490:CDS 30.0%
AGTTTGACTAGTGATTATTC+CGG - chr2_1:54596920-54596939 Msa0212490:CDS 30.0%
AAGAGACACTTAAAAAGGAA+CGG + chr2_1:54597075-54597094 None:intergenic 30.0%
!!! TCCTTTTTAAGTGTCTCTTT+TGG - chr2_1:54597076-54597095 Msa0212490:CDS 30.0%
TCCAAAAGAGACACTTAAAA+AGG + chr2_1:54597080-54597099 None:intergenic 30.0%
TTGTTTCAGCTTGATCAAAC+AGG - chr2_1:54594992-54595011 Msa0212490:intron 35.0%
!! ACGTGTAACTTGTTATCAAC+GGG + chr2_1:54595106-54595125 None:intergenic 35.0%
!! CACGTGTAACTTGTTATCAA+CGG + chr2_1:54595107-54595126 None:intergenic 35.0%
GGAGAAACCATCTATGTATT+TGG - chr2_1:54595214-54595233 Msa0212490:intron 35.0%
GAAACCATCTATGTATTTGG+TGG - chr2_1:54595217-54595236 Msa0212490:intron 35.0%
TCTTCCACCAAATACATAGA+TGG + chr2_1:54595224-54595243 None:intergenic 35.0%
AACATCTCCACTTGAAATCA+AGG + chr2_1:54595308-54595327 None:intergenic 35.0%
! TTGATTTCAAGTGGAGATGT+TGG - chr2_1:54595307-54595326 Msa0212490:intron 35.0%
! TGATTTCAAGTGGAGATGTT+GGG - chr2_1:54595308-54595327 Msa0212490:intron 35.0%
AGGAAGGCTCAATGATTTAT+GGG - chr2_1:54595405-54595424 Msa0212490:intron 35.0%
! GGAAAAATATGGGTTGTGTA+TGG - chr2_1:54595520-54595539 Msa0212490:intron 35.0%
! ACAAGTTGAAAACACACTAC+GGG + chr2_1:54595638-54595657 None:intergenic 35.0%
! TGAGCTTTATGCATTAGACA+CGG - chr2_1:54595741-54595760 Msa0212490:CDS 35.0%
CATACACTAATAATCCCTCT+TGG + chr2_1:54595864-54595883 None:intergenic 35.0%
CAAGAGGGATTATTAGTGTA+TGG - chr2_1:54595862-54595881 Msa0212490:CDS 35.0%
GCATATGTGTGATCAATTCT+AGG - chr2_1:54595977-54595996 Msa0212490:CDS 35.0%
ACAGTATGTCATGTGAACTT+AGG - chr2_1:54596020-54596039 Msa0212490:CDS 35.0%
AAAGCGTGTTTAATACAACC+TGG - chr2_1:54596168-54596187 Msa0212490:intron 35.0%
! CAGGTTCTATTTGAAATACC+AGG + chr2_1:54596189-54596208 None:intergenic 35.0%
CTGGTATTTCAAATAGAACC+TGG - chr2_1:54596187-54596206 Msa0212490:intron 35.0%
CTCATTGTCAACTAATTTCC+AGG + chr2_1:54596208-54596227 None:intergenic 35.0%
CTGGAAATTAGTTGACAATG+AGG - chr2_1:54596206-54596225 Msa0212490:intron 35.0%
GAATTTGATGAGTCAAAGGT+TGG - chr2_1:54596350-54596369 Msa0212490:intron 35.0%
ACAACTTCATCTCTCAAAAC+AGG + chr2_1:54596521-54596540 None:intergenic 35.0%
CAAAATGCAAGTGAGAAATG+GGG - chr2_1:54596551-54596570 Msa0212490:CDS 35.0%
! TGGAATTCCAGTTCATGTTT+TGG - chr2_1:54596595-54596614 Msa0212490:CDS 35.0%
ATCTCATCCAAAACATGAAC+TGG + chr2_1:54596605-54596624 None:intergenic 35.0%
!! AGTTCATGTTTTGGATGAGA+TGG - chr2_1:54596604-54596623 Msa0212490:CDS 35.0%
! TTTTGGATGAGATGGTCAAA+GGG - chr2_1:54596612-54596631 Msa0212490:CDS 35.0%
!!! AACTTTTTTGGTGAGATCAC+GGG + chr2_1:54596687-54596706 None:intergenic 35.0%
!!! CAACTTTTTTGGTGAGATCA+CGG + chr2_1:54596688-54596707 None:intergenic 35.0%
ATTAAGACAAACCTGCAAAC+CGG + chr2_1:54596815-54596834 None:intergenic 35.0%
ATTTACATGAGGGACTAACT+AGG + chr2_1:54597032-54597051 None:intergenic 35.0%
CTCTCCGCAATAAATAACAA+AGG + chr2_1:54597177-54597196 None:intergenic 35.0%
GAGTGACAATTAAAAAGGGA+CGG - chr2_1:54597311-54597330 Msa0212490:CDS 35.0%
TTGTTTCAGCTTGATCAAAC+AGG - chr2_1:54594992-54595011 Msa0212490:intron 35.0%
!! ACGTGTAACTTGTTATCAAC+GGG + chr2_1:54595106-54595125 None:intergenic 35.0%
!! CACGTGTAACTTGTTATCAA+CGG + chr2_1:54595107-54595126 None:intergenic 35.0%
GGAGAAACCATCTATGTATT+TGG - chr2_1:54595214-54595233 Msa0212490:intron 35.0%
GAAACCATCTATGTATTTGG+TGG - chr2_1:54595217-54595236 Msa0212490:intron 35.0%
TCTTCCACCAAATACATAGA+TGG + chr2_1:54595224-54595243 None:intergenic 35.0%
AACATCTCCACTTGAAATCA+AGG + chr2_1:54595308-54595327 None:intergenic 35.0%
! TTGATTTCAAGTGGAGATGT+TGG - chr2_1:54595307-54595326 Msa0212490:intron 35.0%
! TGATTTCAAGTGGAGATGTT+GGG - chr2_1:54595308-54595327 Msa0212490:intron 35.0%
AGGAAGGCTCAATGATTTAT+GGG - chr2_1:54595405-54595424 Msa0212490:intron 35.0%
! GGAAAAATATGGGTTGTGTA+TGG - chr2_1:54595520-54595539 Msa0212490:intron 35.0%
! ACAAGTTGAAAACACACTAC+GGG + chr2_1:54595638-54595657 None:intergenic 35.0%
! TGAGCTTTATGCATTAGACA+CGG - chr2_1:54595741-54595760 Msa0212490:CDS 35.0%
CATACACTAATAATCCCTCT+TGG + chr2_1:54595864-54595883 None:intergenic 35.0%
CAAGAGGGATTATTAGTGTA+TGG - chr2_1:54595862-54595881 Msa0212490:CDS 35.0%
GCATATGTGTGATCAATTCT+AGG - chr2_1:54595977-54595996 Msa0212490:CDS 35.0%
ACAGTATGTCATGTGAACTT+AGG - chr2_1:54596020-54596039 Msa0212490:CDS 35.0%
AAAGCGTGTTTAATACAACC+TGG - chr2_1:54596168-54596187 Msa0212490:intron 35.0%
! CAGGTTCTATTTGAAATACC+AGG + chr2_1:54596189-54596208 None:intergenic 35.0%
CTGGTATTTCAAATAGAACC+TGG - chr2_1:54596187-54596206 Msa0212490:intron 35.0%
CTCATTGTCAACTAATTTCC+AGG + chr2_1:54596208-54596227 None:intergenic 35.0%
CTGGAAATTAGTTGACAATG+AGG - chr2_1:54596206-54596225 Msa0212490:intron 35.0%
GAATTTGATGAGTCAAAGGT+TGG - chr2_1:54596350-54596369 Msa0212490:intron 35.0%
ACAACTTCATCTCTCAAAAC+AGG + chr2_1:54596521-54596540 None:intergenic 35.0%
CAAAATGCAAGTGAGAAATG+GGG - chr2_1:54596551-54596570 Msa0212490:CDS 35.0%
! TGGAATTCCAGTTCATGTTT+TGG - chr2_1:54596595-54596614 Msa0212490:CDS 35.0%
ATCTCATCCAAAACATGAAC+TGG + chr2_1:54596605-54596624 None:intergenic 35.0%
!! AGTTCATGTTTTGGATGAGA+TGG - chr2_1:54596604-54596623 Msa0212490:CDS 35.0%
! TTTTGGATGAGATGGTCAAA+GGG - chr2_1:54596612-54596631 Msa0212490:CDS 35.0%
!!! AACTTTTTTGGTGAGATCAC+GGG + chr2_1:54596687-54596706 None:intergenic 35.0%
!!! CAACTTTTTTGGTGAGATCA+CGG + chr2_1:54596688-54596707 None:intergenic 35.0%
ATTAAGACAAACCTGCAAAC+CGG + chr2_1:54596815-54596834 None:intergenic 35.0%
ATTTACATGAGGGACTAACT+AGG + chr2_1:54597032-54597051 None:intergenic 35.0%
CTCTCCGCAATAAATAACAA+AGG + chr2_1:54597177-54597196 None:intergenic 35.0%
GAGTGACAATTAAAAAGGGA+CGG - chr2_1:54597311-54597330 Msa0212490:CDS 35.0%
GATCAAACAGGAATCTTGCA+AGG - chr2_1:54595004-54595023 Msa0212490:intron 40.0%
ATAGACCTTCTGTCCTACTA+CGG + chr2_1:54595053-54595072 None:intergenic 40.0%
!! CGTGTAACTTGTTATCAACG+GGG + chr2_1:54595105-54595124 None:intergenic 40.0%
TGAAATCAAGGCCCAATTGT+TGG + chr2_1:54595296-54595315 None:intergenic 40.0%
AATTGGGCCTTGATTTCAAG+TGG - chr2_1:54595298-54595317 Msa0212490:intron 40.0%
CAGGAAGGCTCAATGATTTA+TGG - chr2_1:54595404-54595423 Msa0212490:intron 40.0%
TTTATGGGCCTTTGATGTTG+TGG - chr2_1:54595420-54595439 Msa0212490:intron 40.0%
! CACAACCCATATTTTTCCCT+GGG + chr2_1:54595518-54595537 None:intergenic 40.0%
! ACACAACCCATATTTTTCCC+TGG + chr2_1:54595519-54595538 None:intergenic 40.0%
TGACGTACATTTCTTCGATC+TGG - chr2_1:54595564-54595583 Msa0212490:intron 40.0%
! AACAAGTGGGCTTAAACCAA+CGG - chr2_1:54595612-54595631 Msa0212490:CDS 40.0%
GAGGGATTATTAGTGTATGG+TGG - chr2_1:54595865-54595884 Msa0212490:CDS 40.0%
ACTAACTTTGAGCAAGAGCA+AGG + chr2_1:54595930-54595949 None:intergenic 40.0%
TGCTCTTGCTCAAAGTTAGT+TGG - chr2_1:54595930-54595949 Msa0212490:CDS 40.0%
GTCCAAGGACTCATAGAAAA+TGG - chr2_1:54596374-54596393 Msa0212490:intron 40.0%
! CACCATTTTCTATGAGTCCT+TGG + chr2_1:54596379-54596398 None:intergenic 40.0%
TGTTCACAATAGAACATGCG+TGG + chr2_1:54596413-54596432 None:intergenic 40.0%
! GTCCCTACAATTGACTTAAC+AGG - chr2_1:54596482-54596501 Msa0212490:CDS 40.0%
CTCTCAAAACAGGATCATCA+TGG + chr2_1:54596511-54596530 None:intergenic 40.0%
!! GTTTTGGATGAGATGGTCAA+AGG - chr2_1:54596611-54596630 Msa0212490:CDS 40.0%
ATCAAGACCAATCTGCTGAT+TGG - chr2_1:54596732-54596751 Msa0212490:CDS 40.0%
! GGACACACTTGCATTTTTCT+GGG - chr2_1:54596757-54596776 Msa0212490:CDS 40.0%
!! TTCATCAGCTTTAGGAGGAT+CGG + chr2_1:54596786-54596805 None:intergenic 40.0%
TAAAGCTGATGAACTACCAC+CGG - chr2_1:54596793-54596812 Msa0212490:CDS 40.0%
CTGCTGAACTCTAGATTACA+TGG + chr2_1:54596888-54596907 None:intergenic 40.0%
! CATGTAATCTAGAGTTCAGC+AGG - chr2_1:54596886-54596905 Msa0212490:CDS 40.0%
! TAATCTAGAGTTCAGCAGGA+GGG - chr2_1:54596890-54596909 Msa0212490:CDS 40.0%
TTCCGGTAAAAGTTCAAACG+CGG - chr2_1:54596937-54596956 Msa0212490:CDS 40.0%
GACACTTAAAAAGGAACGGA+GGG + chr2_1:54597071-54597090 None:intergenic 40.0%
AGACACTTAAAAAGGAACGG+AGG + chr2_1:54597072-54597091 None:intergenic 40.0%
TGACAATTAAAAAGGGACGG+AGG - chr2_1:54597314-54597333 Msa0212490:CDS 40.0%
GATCAAACAGGAATCTTGCA+AGG - chr2_1:54595004-54595023 Msa0212490:intron 40.0%
ATAGACCTTCTGTCCTACTA+CGG + chr2_1:54595053-54595072 None:intergenic 40.0%
!! CGTGTAACTTGTTATCAACG+GGG + chr2_1:54595105-54595124 None:intergenic 40.0%
TGAAATCAAGGCCCAATTGT+TGG + chr2_1:54595296-54595315 None:intergenic 40.0%
AATTGGGCCTTGATTTCAAG+TGG - chr2_1:54595298-54595317 Msa0212490:intron 40.0%
CAGGAAGGCTCAATGATTTA+TGG - chr2_1:54595404-54595423 Msa0212490:intron 40.0%
TTTATGGGCCTTTGATGTTG+TGG - chr2_1:54595420-54595439 Msa0212490:intron 40.0%
! CACAACCCATATTTTTCCCT+GGG + chr2_1:54595518-54595537 None:intergenic 40.0%
! ACACAACCCATATTTTTCCC+TGG + chr2_1:54595519-54595538 None:intergenic 40.0%
TGACGTACATTTCTTCGATC+TGG - chr2_1:54595564-54595583 Msa0212490:intron 40.0%
! AACAAGTGGGCTTAAACCAA+CGG - chr2_1:54595612-54595631 Msa0212490:CDS 40.0%
GAGGGATTATTAGTGTATGG+TGG - chr2_1:54595865-54595884 Msa0212490:CDS 40.0%
ACTAACTTTGAGCAAGAGCA+AGG + chr2_1:54595930-54595949 None:intergenic 40.0%
TGCTCTTGCTCAAAGTTAGT+TGG - chr2_1:54595930-54595949 Msa0212490:CDS 40.0%
GTCCAAGGACTCATAGAAAA+TGG - chr2_1:54596374-54596393 Msa0212490:intron 40.0%
! CACCATTTTCTATGAGTCCT+TGG + chr2_1:54596379-54596398 None:intergenic 40.0%
TGTTCACAATAGAACATGCG+TGG + chr2_1:54596413-54596432 None:intergenic 40.0%
! GTCCCTACAATTGACTTAAC+AGG - chr2_1:54596482-54596501 Msa0212490:CDS 40.0%
CTCTCAAAACAGGATCATCA+TGG + chr2_1:54596511-54596530 None:intergenic 40.0%
!! GTTTTGGATGAGATGGTCAA+AGG - chr2_1:54596611-54596630 Msa0212490:CDS 40.0%
ATCAAGACCAATCTGCTGAT+TGG - chr2_1:54596732-54596751 Msa0212490:CDS 40.0%
! GGACACACTTGCATTTTTCT+GGG - chr2_1:54596757-54596776 Msa0212490:CDS 40.0%
!! TTCATCAGCTTTAGGAGGAT+CGG + chr2_1:54596786-54596805 None:intergenic 40.0%
TAAAGCTGATGAACTACCAC+CGG - chr2_1:54596793-54596812 Msa0212490:CDS 40.0%
CTGCTGAACTCTAGATTACA+TGG + chr2_1:54596888-54596907 None:intergenic 40.0%
! CATGTAATCTAGAGTTCAGC+AGG - chr2_1:54596886-54596905 Msa0212490:CDS 40.0%
! TAATCTAGAGTTCAGCAGGA+GGG - chr2_1:54596890-54596909 Msa0212490:CDS 40.0%
TTCCGGTAAAAGTTCAAACG+CGG - chr2_1:54596937-54596956 Msa0212490:CDS 40.0%
GACACTTAAAAAGGAACGGA+GGG + chr2_1:54597071-54597090 None:intergenic 40.0%
AGACACTTAAAAAGGAACGG+AGG + chr2_1:54597072-54597091 None:intergenic 40.0%
TGACAATTAAAAAGGGACGG+AGG - chr2_1:54597314-54597333 Msa0212490:CDS 40.0%
TCACATGCTATTGCCGTAGT+AGG - chr2_1:54595037-54595056 Msa0212490:intron 45.0%
TATTGCCGTAGTAGGACAGA+AGG - chr2_1:54595045-54595064 Msa0212490:intron 45.0%
GGACAGAAGGTCTATGCATT+CGG - chr2_1:54595058-54595077 Msa0212490:intron 45.0%
ACGACCTAGATACCTTGACA+TGG - chr2_1:54595128-54595147 Msa0212490:intron 45.0%
! CTGACCATGTCAAGGTATCT+AGG + chr2_1:54595135-54595154 None:intergenic 45.0%
AACATACACACGTCGGTCAT+CGG + chr2_1:54595365-54595384 None:intergenic 45.0%
! GACCGACGTGTGTATGTTTT+CGG - chr2_1:54595367-54595386 Msa0212490:intron 45.0%
CACCGAAAACATACACACGT+CGG + chr2_1:54595372-54595391 None:intergenic 45.0%
CTTGCCATCCACAACATCAA+AGG + chr2_1:54595431-54595450 None:intergenic 45.0%
TTGATGTTGTGGATGGCAAG+TGG - chr2_1:54595431-54595450 Msa0212490:intron 45.0%
TGATGTTGTGGATGGCAAGT+GGG - chr2_1:54595432-54595451 Msa0212490:intron 45.0%
TTGCAACTTTCACCAGGAGA+TGG + chr2_1:54595466-54595485 None:intergenic 45.0%
ATCTCCTGGTGAAAGTTGCA+AGG - chr2_1:54595465-54595484 Msa0212490:intron 45.0%
TCTCCTGGTGAAAGTTGCAA+GGG - chr2_1:54595466-54595485 Msa0212490:intron 45.0%
AAAGTTGCAAGGGAAGAGGT+GGG - chr2_1:54595476-54595495 Msa0212490:intron 45.0%
AGTGGCCCAGGGAAAAATAT+GGG - chr2_1:54595510-54595529 Msa0212490:intron 45.0%
TGTGTATGGTTTCGCTGGAA+TGG - chr2_1:54595534-54595553 Msa0212490:intron 45.0%
TCGATCTGGCCCAAAAAACA+TGG - chr2_1:54595578-54595597 Msa0212490:CDS 45.0%
CGATCTGGCCCAAAAAACAT+GGG - chr2_1:54595579-54595598 Msa0212490:CDS 45.0%
!!! CACTTGGGCCCATGTTTTTT+GGG + chr2_1:54595590-54595609 None:intergenic 45.0%
AAGCCCACTTGTTTCCACTT+GGG + chr2_1:54595605-54595624 None:intergenic 45.0%
TAAGCCCACTTGTTTCCACT+TGG + chr2_1:54595606-54595625 None:intergenic 45.0%
GAAATAGACCCTAGTGACCA+AGG - chr2_1:54595691-54595710 Msa0212490:CDS 45.0%
!!! ATGGGTGCTGGTCAATTTTC+AGG - chr2_1:54595718-54595737 Msa0212490:CDS 45.0%
TAGACACGGAGACACTATCA+TGG - chr2_1:54595755-54595774 Msa0212490:CDS 45.0%
TTGGACGATAAGGTGGAATC+AGG - chr2_1:54595784-54595803 Msa0212490:CDS 45.0%
TGGAATCAGGTGATCATCCA+GGG - chr2_1:54595797-54595816 Msa0212490:CDS 45.0%
ATTTCACCAGCAAGATGCCA+AGG - chr2_1:54596643-54596662 Msa0212490:CDS 45.0%
ATAGTACTCCTTCCTCACCT+TGG + chr2_1:54596663-54596682 None:intergenic 45.0%
! AAGACCAATCTGCTGATTGG+AGG - chr2_1:54596735-54596754 Msa0212490:CDS 45.0%
! AGACCAATCTGCTGATTGGA+GGG - chr2_1:54596736-54596755 Msa0212490:CDS 45.0%
! GGGACACACTTGCATTTTTC+TGG - chr2_1:54596756-54596775 Msa0212490:CDS 45.0%
!! TCATCAGCTTTAGGAGGATC+GGG + chr2_1:54596785-54596804 None:intergenic 45.0%
!! GGTAGTTCATCAGCTTTAGG+AGG + chr2_1:54596791-54596810 None:intergenic 45.0%
GGTGGTAGTTCATCAGCTTT+AGG + chr2_1:54596794-54596813 None:intergenic 45.0%
! GTAATCTAGAGTTCAGCAGG+AGG - chr2_1:54596889-54596908 Msa0212490:CDS 45.0%
TCCGGTAAAAGTTCAAACGC+GGG - chr2_1:54596938-54596957 Msa0212490:CDS 45.0%
! ACCCGCGTTTGAACTTTTAC+CGG + chr2_1:54596942-54596961 None:intergenic 45.0%
!!! TGCACAGAAAGGGGCATTTT+TGG + chr2_1:54597384-54597403 None:intergenic 45.0%
ACACACTGAGTGCACAGAAA+GGG + chr2_1:54597394-54597413 None:intergenic 45.0%
TACACACTGAGTGCACAGAA+AGG + chr2_1:54597395-54597414 None:intergenic 45.0%
TCACATGCTATTGCCGTAGT+AGG - chr2_1:54595037-54595056 Msa0212490:intron 45.0%
TATTGCCGTAGTAGGACAGA+AGG - chr2_1:54595045-54595064 Msa0212490:intron 45.0%
GGACAGAAGGTCTATGCATT+CGG - chr2_1:54595058-54595077 Msa0212490:intron 45.0%
ACGACCTAGATACCTTGACA+TGG - chr2_1:54595128-54595147 Msa0212490:intron 45.0%
! CTGACCATGTCAAGGTATCT+AGG + chr2_1:54595135-54595154 None:intergenic 45.0%
AACATACACACGTCGGTCAT+CGG + chr2_1:54595365-54595384 None:intergenic 45.0%
! GACCGACGTGTGTATGTTTT+CGG - chr2_1:54595367-54595386 Msa0212490:intron 45.0%
CACCGAAAACATACACACGT+CGG + chr2_1:54595372-54595391 None:intergenic 45.0%
CTTGCCATCCACAACATCAA+AGG + chr2_1:54595431-54595450 None:intergenic 45.0%
TTGATGTTGTGGATGGCAAG+TGG - chr2_1:54595431-54595450 Msa0212490:intron 45.0%
TGATGTTGTGGATGGCAAGT+GGG - chr2_1:54595432-54595451 Msa0212490:intron 45.0%
TTGCAACTTTCACCAGGAGA+TGG + chr2_1:54595466-54595485 None:intergenic 45.0%
ATCTCCTGGTGAAAGTTGCA+AGG - chr2_1:54595465-54595484 Msa0212490:intron 45.0%
TCTCCTGGTGAAAGTTGCAA+GGG - chr2_1:54595466-54595485 Msa0212490:intron 45.0%
AAAGTTGCAAGGGAAGAGGT+GGG - chr2_1:54595476-54595495 Msa0212490:intron 45.0%
AGTGGCCCAGGGAAAAATAT+GGG - chr2_1:54595510-54595529 Msa0212490:intron 45.0%
TGTGTATGGTTTCGCTGGAA+TGG - chr2_1:54595534-54595553 Msa0212490:intron 45.0%
TCGATCTGGCCCAAAAAACA+TGG - chr2_1:54595578-54595597 Msa0212490:CDS 45.0%
CGATCTGGCCCAAAAAACAT+GGG - chr2_1:54595579-54595598 Msa0212490:CDS 45.0%
!!! CACTTGGGCCCATGTTTTTT+GGG + chr2_1:54595590-54595609 None:intergenic 45.0%
AAGCCCACTTGTTTCCACTT+GGG + chr2_1:54595605-54595624 None:intergenic 45.0%
TAAGCCCACTTGTTTCCACT+TGG + chr2_1:54595606-54595625 None:intergenic 45.0%
GAAATAGACCCTAGTGACCA+AGG - chr2_1:54595691-54595710 Msa0212490:CDS 45.0%
!!! ATGGGTGCTGGTCAATTTTC+AGG - chr2_1:54595718-54595737 Msa0212490:CDS 45.0%
TAGACACGGAGACACTATCA+TGG - chr2_1:54595755-54595774 Msa0212490:CDS 45.0%
TTGGACGATAAGGTGGAATC+AGG - chr2_1:54595784-54595803 Msa0212490:CDS 45.0%
TGGAATCAGGTGATCATCCA+GGG - chr2_1:54595797-54595816 Msa0212490:CDS 45.0%
ATTTCACCAGCAAGATGCCA+AGG - chr2_1:54596643-54596662 Msa0212490:CDS 45.0%
ATAGTACTCCTTCCTCACCT+TGG + chr2_1:54596663-54596682 None:intergenic 45.0%
! AAGACCAATCTGCTGATTGG+AGG - chr2_1:54596735-54596754 Msa0212490:CDS 45.0%
! AGACCAATCTGCTGATTGGA+GGG - chr2_1:54596736-54596755 Msa0212490:CDS 45.0%
! GGGACACACTTGCATTTTTC+TGG - chr2_1:54596756-54596775 Msa0212490:CDS 45.0%
!! TCATCAGCTTTAGGAGGATC+GGG + chr2_1:54596785-54596804 None:intergenic 45.0%
!! GGTAGTTCATCAGCTTTAGG+AGG + chr2_1:54596791-54596810 None:intergenic 45.0%
GGTGGTAGTTCATCAGCTTT+AGG + chr2_1:54596794-54596813 None:intergenic 45.0%
! GTAATCTAGAGTTCAGCAGG+AGG - chr2_1:54596889-54596908 Msa0212490:CDS 45.0%
TCCGGTAAAAGTTCAAACGC+GGG - chr2_1:54596938-54596957 Msa0212490:CDS 45.0%
! ACCCGCGTTTGAACTTTTAC+CGG + chr2_1:54596942-54596961 None:intergenic 45.0%
!!! TGCACAGAAAGGGGCATTTT+TGG + chr2_1:54597384-54597403 None:intergenic 45.0%
ACACACTGAGTGCACAGAAA+GGG + chr2_1:54597394-54597413 None:intergenic 45.0%
TACACACTGAGTGCACAGAA+AGG + chr2_1:54597395-54597414 None:intergenic 45.0%
CAGAAGGTCTATGCATTCGG+CGG - chr2_1:54595061-54595080 Msa0212490:intron 50.0%
TTGTTATCAACGGGGACACG+TGG + chr2_1:54595097-54595116 None:intergenic 50.0%
ATCGGCTACTGACCATGTCA+AGG + chr2_1:54595143-54595162 None:intergenic 50.0%
TGGTCAGTAGCCGATGTATC+CGG - chr2_1:54595148-54595167 Msa0212490:intron 50.0%
ATGGAGTGGTAGCTACGGTT+AGG + chr2_1:54595337-54595356 None:intergenic 50.0%
CAGTCATGGAGTGGTAGCTA+CGG + chr2_1:54595342-54595361 None:intergenic 50.0%
! CGACGTGTGTATGTTTTCGG+TGG - chr2_1:54595370-54595389 Msa0212490:intron 50.0%
! GTGTATGTTTTCGGTGGCTG+TGG - chr2_1:54595376-54595395 Msa0212490:intron 50.0%
TGGGCCTTTGATGTTGTGGA+TGG - chr2_1:54595424-54595443 Msa0212490:intron 50.0%
TGGGTGGAATTTCCATCTCC+TGG - chr2_1:54595451-54595470 Msa0212490:intron 50.0%
CTTCCCTTGCAACTTTCACC+AGG + chr2_1:54595472-54595491 None:intergenic 50.0%
GGTGAAAGTTGCAAGGGAAG+AGG - chr2_1:54595472-54595491 Msa0212490:intron 50.0%
GAAAGTTGCAAGGGAAGAGG+TGG - chr2_1:54595475-54595494 Msa0212490:intron 50.0%
! TTTTTCCCTGGGCCACTGTT+AGG + chr2_1:54595507-54595526 None:intergenic 50.0%
CAGTGGCCCAGGGAAAAATA+TGG - chr2_1:54595509-54595528 Msa0212490:intron 50.0%
TGGGTTGTGTATGGTTTCGC+TGG - chr2_1:54595529-54595548 Msa0212490:intron 50.0%
TGGTTTCGCTGGAATGGAAG+TGG - chr2_1:54595540-54595559 Msa0212490:intron 50.0%
!!! CCACTTGGGCCCATGTTTTT+TGG + chr2_1:54595591-54595610 None:intergenic 50.0%
CCAAAAAACATGGGCCCAAG+TGG - chr2_1:54595588-54595607 Msa0212490:CDS 50.0%
CCATGTGACCTTGGTCACTA+GGG + chr2_1:54595702-54595721 None:intergenic 50.0%
CCTAGTGACCAAGGTCACAT+GGG - chr2_1:54595700-54595719 Msa0212490:CDS 50.0%
GACACTATCATGGACGAGGT+TGG - chr2_1:54595765-54595784 Msa0212490:CDS 50.0%
ATGGACGAGGTTGGACGATA+AGG - chr2_1:54595774-54595793 Msa0212490:CDS 50.0%
GTGGAATCAGGTGATCATCC+AGG - chr2_1:54595796-54595815 Msa0212490:CDS 50.0%
ATAATCCCTCTTGGCTGCCT+CGG + chr2_1:54595855-54595874 None:intergenic 50.0%
TCATCAAGCCTGTCGTTGCT+AGG + chr2_1:54595898-54595917 None:intergenic 50.0%
!! GAGTCAAAGGTTGGTGTCCA+AGG - chr2_1:54596359-54596378 Msa0212490:intron 50.0%
TGTCCCTCCAATCAGCAGAT+TGG + chr2_1:54596742-54596761 None:intergenic 50.0%
!! ATGAACTACCACCGGTTTGC+AGG - chr2_1:54596801-54596820 Msa0212490:CDS 50.0%
AAGACAAACCTGCAAACCGG+TGG + chr2_1:54596812-54596831 None:intergenic 50.0%
CACACTGAGTGCACAGAAAG+GGG + chr2_1:54597393-54597412 None:intergenic 50.0%
CAGAAGGTCTATGCATTCGG+CGG - chr2_1:54595061-54595080 Msa0212490:intron 50.0%
TTGTTATCAACGGGGACACG+TGG + chr2_1:54595097-54595116 None:intergenic 50.0%
ATCGGCTACTGACCATGTCA+AGG + chr2_1:54595143-54595162 None:intergenic 50.0%
TGGTCAGTAGCCGATGTATC+CGG - chr2_1:54595148-54595167 Msa0212490:intron 50.0%
ATGGAGTGGTAGCTACGGTT+AGG + chr2_1:54595337-54595356 None:intergenic 50.0%
CAGTCATGGAGTGGTAGCTA+CGG + chr2_1:54595342-54595361 None:intergenic 50.0%
! CGACGTGTGTATGTTTTCGG+TGG - chr2_1:54595370-54595389 Msa0212490:intron 50.0%
! GTGTATGTTTTCGGTGGCTG+TGG - chr2_1:54595376-54595395 Msa0212490:intron 50.0%
TGGGCCTTTGATGTTGTGGA+TGG - chr2_1:54595424-54595443 Msa0212490:intron 50.0%
TGGGTGGAATTTCCATCTCC+TGG - chr2_1:54595451-54595470 Msa0212490:intron 50.0%
CTTCCCTTGCAACTTTCACC+AGG + chr2_1:54595472-54595491 None:intergenic 50.0%
GGTGAAAGTTGCAAGGGAAG+AGG - chr2_1:54595472-54595491 Msa0212490:intron 50.0%
GAAAGTTGCAAGGGAAGAGG+TGG - chr2_1:54595475-54595494 Msa0212490:intron 50.0%
! TTTTTCCCTGGGCCACTGTT+AGG + chr2_1:54595507-54595526 None:intergenic 50.0%
CAGTGGCCCAGGGAAAAATA+TGG - chr2_1:54595509-54595528 Msa0212490:intron 50.0%
TGGGTTGTGTATGGTTTCGC+TGG - chr2_1:54595529-54595548 Msa0212490:intron 50.0%
TGGTTTCGCTGGAATGGAAG+TGG - chr2_1:54595540-54595559 Msa0212490:intron 50.0%
!!! CCACTTGGGCCCATGTTTTT+TGG + chr2_1:54595591-54595610 None:intergenic 50.0%
CCAAAAAACATGGGCCCAAG+TGG - chr2_1:54595588-54595607 Msa0212490:CDS 50.0%
CCATGTGACCTTGGTCACTA+GGG + chr2_1:54595702-54595721 None:intergenic 50.0%
CCTAGTGACCAAGGTCACAT+GGG - chr2_1:54595700-54595719 Msa0212490:CDS 50.0%
GACACTATCATGGACGAGGT+TGG - chr2_1:54595765-54595784 Msa0212490:CDS 50.0%
ATGGACGAGGTTGGACGATA+AGG - chr2_1:54595774-54595793 Msa0212490:CDS 50.0%
GTGGAATCAGGTGATCATCC+AGG - chr2_1:54595796-54595815 Msa0212490:CDS 50.0%
ATAATCCCTCTTGGCTGCCT+CGG + chr2_1:54595855-54595874 None:intergenic 50.0%
TCATCAAGCCTGTCGTTGCT+AGG + chr2_1:54595898-54595917 None:intergenic 50.0%
!! GAGTCAAAGGTTGGTGTCCA+AGG - chr2_1:54596359-54596378 Msa0212490:intron 50.0%
TGTCCCTCCAATCAGCAGAT+TGG + chr2_1:54596742-54596761 None:intergenic 50.0%
!! ATGAACTACCACCGGTTTGC+AGG - chr2_1:54596801-54596820 Msa0212490:CDS 50.0%
AAGACAAACCTGCAAACCGG+TGG + chr2_1:54596812-54596831 None:intergenic 50.0%
CACACTGAGTGCACAGAAAG+GGG + chr2_1:54597393-54597412 None:intergenic 50.0%
GGTCAGTAGCCGATGTATCC+GGG - chr2_1:54595149-54595168 Msa0212490:intron 55.0%
ATCGTGACACCAACACGTGG+AGG + chr2_1:54595184-54595203 None:intergenic 55.0%
!! TCCACGTGTTGGTGTCACGA+TGG - chr2_1:54595183-54595202 Msa0212490:intron 55.0%
GAGTGGTAGCTACGGTTAGG+AGG + chr2_1:54595334-54595353 None:intergenic 55.0%
! TGTTTTCGGTGGCTGTGGAG+TGG - chr2_1:54595381-54595400 Msa0212490:intron 55.0%
TGTTGTGGATGGCAAGTGGG+TGG - chr2_1:54595435-54595454 Msa0212490:intron 55.0%
TGGGCCCAAGTGGAAACAAG+TGG - chr2_1:54595598-54595617 Msa0212490:CDS 55.0%
GGGCCCAAGTGGAAACAAGT+GGG - chr2_1:54595599-54595618 Msa0212490:CDS 55.0%
GAAAACACACTACGGGCCGT+TGG + chr2_1:54595631-54595650 None:intergenic 55.0%
CCCTAGTGACCAAGGTCACA+TGG - chr2_1:54595699-54595718 Msa0212490:CDS 55.0%
CCCATGTGACCTTGGTCACT+AGG + chr2_1:54595703-54595722 None:intergenic 55.0%
CGGAGACACTATCATGGACG+AGG - chr2_1:54595761-54595780 Msa0212490:CDS 55.0%
GACGAGGTTGGACGATAAGG+TGG - chr2_1:54595777-54595796 Msa0212490:CDS 55.0%
GCAACTCACCTAGCAACGAC+AGG - chr2_1:54595887-54595906 Msa0212490:CDS 55.0%
ACCAGCAAGATGCCAAGGTG+AGG - chr2_1:54596648-54596667 Msa0212490:CDS 55.0%
TCCTCACCTTGGCATCTTGC+TGG + chr2_1:54596652-54596671 None:intergenic 55.0%
GCAAGATGCCAAGGTGAGGA+AGG - chr2_1:54596652-54596671 Msa0212490:CDS 55.0%
GGTCAGTAGCCGATGTATCC+GGG - chr2_1:54595149-54595168 Msa0212490:intron 55.0%
ATCGTGACACCAACACGTGG+AGG + chr2_1:54595184-54595203 None:intergenic 55.0%
!! TCCACGTGTTGGTGTCACGA+TGG - chr2_1:54595183-54595202 Msa0212490:intron 55.0%
GAGTGGTAGCTACGGTTAGG+AGG + chr2_1:54595334-54595353 None:intergenic 55.0%
! TGTTTTCGGTGGCTGTGGAG+TGG - chr2_1:54595381-54595400 Msa0212490:intron 55.0%
TGTTGTGGATGGCAAGTGGG+TGG - chr2_1:54595435-54595454 Msa0212490:intron 55.0%
TGGGCCCAAGTGGAAACAAG+TGG - chr2_1:54595598-54595617 Msa0212490:CDS 55.0%
GGGCCCAAGTGGAAACAAGT+GGG - chr2_1:54595599-54595618 Msa0212490:CDS 55.0%
GAAAACACACTACGGGCCGT+TGG + chr2_1:54595631-54595650 None:intergenic 55.0%
CCCTAGTGACCAAGGTCACA+TGG - chr2_1:54595699-54595718 Msa0212490:CDS 55.0%
CCCATGTGACCTTGGTCACT+AGG + chr2_1:54595703-54595722 None:intergenic 55.0%
CGGAGACACTATCATGGACG+AGG - chr2_1:54595761-54595780 Msa0212490:CDS 55.0%
GACGAGGTTGGACGATAAGG+TGG - chr2_1:54595777-54595796 Msa0212490:CDS 55.0%
GCAACTCACCTAGCAACGAC+AGG - chr2_1:54595887-54595906 Msa0212490:CDS 55.0%
ACCAGCAAGATGCCAAGGTG+AGG - chr2_1:54596648-54596667 Msa0212490:CDS 55.0%
TCCTCACCTTGGCATCTTGC+TGG + chr2_1:54596652-54596671 None:intergenic 55.0%
GCAAGATGCCAAGGTGAGGA+AGG - chr2_1:54596652-54596671 Msa0212490:CDS 55.0%
CGGTGTGCTCCCGGATACAT+CGG + chr2_1:54595161-54595180 None:intergenic 60.0%
GTGACACCAACACGTGGAGG+CGG + chr2_1:54595181-54595200 None:intergenic 60.0%
GCCATCGTGACACCAACACG+TGG + chr2_1:54595187-54595206 None:intergenic 60.0%
! GGTGTCACGATGGCTGCAGT+TGG - chr2_1:54595193-54595212 Msa0212490:intron 60.0%
GGTCATCGGCAGTCATGGAG+TGG + chr2_1:54595351-54595370 None:intergenic 60.0%
ACGTCGGTCATCGGCAGTCA+TGG + chr2_1:54595356-54595375 None:intergenic 60.0%
TTGCAAGGGAAGAGGTGGGC+CGG - chr2_1:54595480-54595499 Msa0212490:intron 60.0%
GACCAAGGTCACATGGGTGC+TGG - chr2_1:54595706-54595725 Msa0212490:CDS 60.0%
GACCAGCACCCATGTGACCT+TGG + chr2_1:54595711-54595730 None:intergenic 60.0%
GTGATCATCCAGGGCCACGT+GGG - chr2_1:54595806-54595825 Msa0212490:CDS 60.0%
CGGTGTGCTCCCGGATACAT+CGG + chr2_1:54595161-54595180 None:intergenic 60.0%
GTGACACCAACACGTGGAGG+CGG + chr2_1:54595181-54595200 None:intergenic 60.0%
GCCATCGTGACACCAACACG+TGG + chr2_1:54595187-54595206 None:intergenic 60.0%
! GGTGTCACGATGGCTGCAGT+TGG - chr2_1:54595193-54595212 Msa0212490:intron 60.0%
GGTCATCGGCAGTCATGGAG+TGG + chr2_1:54595351-54595370 None:intergenic 60.0%
ACGTCGGTCATCGGCAGTCA+TGG + chr2_1:54595356-54595375 None:intergenic 60.0%
TTGCAAGGGAAGAGGTGGGC+CGG - chr2_1:54595480-54595499 Msa0212490:intron 60.0%
GACCAAGGTCACATGGGTGC+TGG - chr2_1:54595706-54595725 Msa0212490:CDS 60.0%
GACCAGCACCCATGTGACCT+TGG + chr2_1:54595711-54595730 None:intergenic 60.0%
GTGATCATCCAGGGCCACGT+GGG - chr2_1:54595806-54595825 Msa0212490:CDS 60.0%
AGCACACCGCCTCCACGTGT+TGG - chr2_1:54595172-54595191 Msa0212490:intron 65.0%
TTCGGTGGCTGTGGAGTGGC+AGG - chr2_1:54595385-54595404 Msa0212490:intron 65.0%
GTGGCTGTGGAGTGGCAGGA+AGG - chr2_1:54595389-54595408 Msa0212490:intron 65.0%
TGCAAGGGAAGAGGTGGGCC+GGG - chr2_1:54595481-54595500 Msa0212490:intron 65.0%
GGTGATCATCCAGGGCCACG+TGG - chr2_1:54595805-54595824 Msa0212490:CDS 65.0%
ATCATCCAGGGCCACGTGGG+TGG - chr2_1:54595809-54595828 Msa0212490:CDS 65.0%
GCAAATGCGCACCACCCACG+TGG + chr2_1:54595823-54595842 None:intergenic 65.0%
CGTGGGTGGTGCGCATTTGC+CGG - chr2_1:54595823-54595842 Msa0212490:CDS 65.0%
! GCATTTGCCGGTGCTAGCCG+AGG - chr2_1:54595835-54595854 Msa0212490:CDS 65.0%
TTGGCTGCCTCGGCTAGCAC+CGG + chr2_1:54595845-54595864 None:intergenic 65.0%
TGCTAGCCGAGGCAGCCAAG+AGG - chr2_1:54595846-54595865 Msa0212490:CDS 65.0%
GCTAGCCGAGGCAGCCAAGA+GGG - chr2_1:54595847-54595866 Msa0212490:CDS 65.0%
AGCACACCGCCTCCACGTGT+TGG - chr2_1:54595172-54595191 Msa0212490:intron 65.0%
TTCGGTGGCTGTGGAGTGGC+AGG - chr2_1:54595385-54595404 Msa0212490:intron 65.0%
GTGGCTGTGGAGTGGCAGGA+AGG - chr2_1:54595389-54595408 Msa0212490:intron 65.0%
TGCAAGGGAAGAGGTGGGCC+GGG - chr2_1:54595481-54595500 Msa0212490:intron 65.0%
GGTGATCATCCAGGGCCACG+TGG - chr2_1:54595805-54595824 Msa0212490:CDS 65.0%
ATCATCCAGGGCCACGTGGG+TGG - chr2_1:54595809-54595828 Msa0212490:CDS 65.0%
GCAAATGCGCACCACCCACG+TGG + chr2_1:54595823-54595842 None:intergenic 65.0%
CGTGGGTGGTGCGCATTTGC+CGG - chr2_1:54595823-54595842 Msa0212490:CDS 65.0%
! GCATTTGCCGGTGCTAGCCG+AGG - chr2_1:54595835-54595854 Msa0212490:CDS 65.0%
TTGGCTGCCTCGGCTAGCAC+CGG + chr2_1:54595845-54595864 None:intergenic 65.0%
TGCTAGCCGAGGCAGCCAAG+AGG - chr2_1:54595846-54595865 Msa0212490:CDS 65.0%
GCTAGCCGAGGCAGCCAAGA+GGG - chr2_1:54595847-54595866 Msa0212490:CDS 65.0%
ACGTGGAGGCGGTGTGCTCC+CGG + chr2_1:54595170-54595189 None:intergenic 70.0%
AGGTGGGCCGGGCCTAACAG+TGG - chr2_1:54595492-54595511 Msa0212490:intron 70.0%
CCCTGGGCCACTGTTAGGCC+CGG + chr2_1:54595502-54595521 None:intergenic 70.0%
CCGGGCCTAACAGTGGCCCA+GGG - chr2_1:54595499-54595518 Msa0212490:intron 70.0%
ACGTGGAGGCGGTGTGCTCC+CGG + chr2_1:54595170-54595189 None:intergenic 70.0%
AGGTGGGCCGGGCCTAACAG+TGG - chr2_1:54595492-54595511 Msa0212490:intron 70.0%
CCCTGGGCCACTGTTAGGCC+CGG + chr2_1:54595502-54595521 None:intergenic 70.0%
CCGGGCCTAACAGTGGCCCA+GGG - chr2_1:54595499-54595518 Msa0212490:intron 70.0%
GCCGGGCCTAACAGTGGCCC+AGG - chr2_1:54595498-54595517 Msa0212490:intron 75.0%
GCCGGGCCTAACAGTGGCCC+AGG - chr2_1:54595498-54595517 Msa0212490:intron 75.0%
! GCGCACCACCCACGTGGCCC+TGG + chr2_1:54595817-54595836 None:intergenic 80.0%
! GCGCACCACCCACGTGGCCC+TGG + chr2_1:54595817-54595836 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 54594965 54597417 54594965 ID=Msa0212490;Name=Msa0212490
chr2_1 mRNA 54594965 54597417 54594965 ID=Msa0212490-mRNA-1;Parent=Msa0212490;Name=Msa0212490-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|0|0|0.66|1|1|3|0|496
chr2_1 exon 54596439 54597417 54596439 ID=Msa0212490-mRNA-1:exon:15146;Parent=Msa0212490-mRNA-1
chr2_1 exon 54595568 54596070 54595568 ID=Msa0212490-mRNA-1:exon:15145;Parent=Msa0212490-mRNA-1
chr2_1 exon 54594965 54594973 54594965 ID=Msa0212490-mRNA-1:exon:15144;Parent=Msa0212490-mRNA-1
chr2_1 CDS 54596439 54597417 54596439 ID=Msa0212490-mRNA-1:cds;Parent=Msa0212490-mRNA-1
chr2_1 CDS 54595568 54596070 54595568 ID=Msa0212490-mRNA-1:cds;Parent=Msa0212490-mRNA-1
chr2_1 CDS 54594965 54594973 54594965 ID=Msa0212490-mRNA-1:cds;Parent=Msa0212490-mRNA-1
Gene Sequence

>Msa0212490

ATGAAATATTCAGATTTTTTCAAATTATTGTTTCAGCTTGATCAAACAGGAATCTTGCAAGGAGCAAGAAGTTCACATGCTATTGCCGTAGTAGGACAGAAGGTCTATGCATTCGGCGGTGAGTTTGAGCCACGTGTCCCCGTTGATAACAAGTTACACGTGTACGACCTAGATACCTTGACATGGTCAGTAGCCGATGTATCCGGGAGCACACCGCCTCCACGTGTTGGTGTCACGATGGCTGCAGTTGGAGAAACCATCTATGTATTTGGTGGAAGAGATGCTGAACACAATGAACTCAATGAGCTCTATTCTTTTGACACTAAAACCAACAATTGGGCCTTGATTTCAAGTGGAGATGTTGGGCCTCCTAACCGTAGCTACCACTCCATGACTGCCGATGACCGACGTGTGTATGTTTTCGGTGGCTGTGGAGTGGCAGGAAGGCTCAATGATTTATGGGCCTTTGATGTTGTGGATGGCAAGTGGGTGGAATTTCCATCTCCTGGTGAAAGTTGCAAGGGAAGAGGTGGGCCGGGCCTAACAGTGGCCCAGGGAAAAATATGGGTTGTGTATGGTTTCGCTGGAATGGAAGTGGATGACGTACATTTCTTCGATCTGGCCCAAAAAACATGGGCCCAAGTGGAAACAAGTGGGCTTAAACCAACGGCCCGTAGTGTGTTTTCAACTTGTTTAATTGGGAAACACATAATTGTATATGGTGGGGAAATAGACCCTAGTGACCAAGGTCACATGGGTGCTGGTCAATTTTCAGGTGAGCTTTATGCATTAGACACGGAGACACTATCATGGACGAGGTTGGACGATAAGGTGGAATCAGGTGATCATCCAGGGCCACGTGGGTGGTGCGCATTTGCCGGTGCTAGCCGAGGCAGCCAAGAGGGATTATTAGTGTATGGTGGCAACTCACCTAGCAACGACAGGCTTGATGACATTTTCTTCCTTGCTCTTGCTCAAAGAAATGCTCAAATTTATGACAGAAAAAGTGAACTAAAGGAATTTGATGAGTCAAAGGTTGGTGTCCAAGGACTCATAGAAAATGGTGTAACAAAAGTTCCACGCATGTTCTATTGTGAACAATCTAATATCAATCATGGTTCAGTCAATGAATCAAATTCAAAGCTTAGTGTCCCTACAATTGACTTAACAGGAATCCATGATGATCCTGTTTTGAGAGATGAAGTTGTAAGAAAAGTTCAAAATGCAAGTGAGAAATGGGGATTCTTTCAAGTAATAAATCATGGAATTCCAGTTCATGTTTTGGATGAGATGGTCAAAGGGACACGTAGATTTCACCAGCAAGATGCCAAGGTGAGGAAGGAGTACTATACCCGTGATCTCACCAAAAAAGTTGTTTATCTTTCCAATTTTACTCTTTATCAAGACCAATCTGCTGATTGGAGGGACACACTTGCATTTTTCTGGGCACCCGATCCTCCTAAAGCTGATGAACTACCACCGTGTGTATGA
Protein sequence

>Msa0212490

MKYSDFFKLLFQLDQTGILQGARSSHAIAVVGQKVYAFGGEFEPRVPVDNKLHVYDLDTLTWSVADVSGSTPPPRVGVTMAAVGETIYVFGGRDAEHNELNELYSFDTKTNNWALISSGDVGPPNRSYHSMTADDRRVYVFGGCGVAGRLNDLWAFDVVDGKWVEFPSPGESCKGRGGPGLTVAQGKIWVVYGFAGMEVDDVHFFDLAQKTWAQVETSGLKPTARSVFSTCLIGKHIIVYGGEIDPSDQGHMGAGQFSGELYALDTETLSWTRLDDKVESGDHPGPRGWCAFAGASRGSQEGLLVYGGNSPSNDRLDDIFFLALAQRNAQIYDRKSELKEFDESKVGVQGLIENGVTKVPRMFYCEQSNINHGSVNESNSKLSVPTIDLTGIHDDPVLRDEVVRKVQNASEKWGFFQVINHGIPVHVLDEMVKGTRRFHQQDAKVRKEYYTRDLTKKVVYLSNFTLYQDQSADWRDTLAFFWAPDPPKADELPPCV*