AlfalfaGEDB | Msa0252880

M. sativa cultivar zhongmu-4 / Msa0252880

KEGG: -
GO: -
PFAM: PF13415.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0252880	XP_003596162.1	91.057	369	33	0	326	694	13	381	0.0	701

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0252880	sp\|Q84MB3\|ACCH1_ARATH	55.432	359	154	3	331	688	12	365	6.47e-138	412

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0252880	G7IH09	91.057	369	33	0	326	694	13	381	0.0	701

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0012790	Msa0252880	0.805086	1.582119e-49	-8.615850e-47
Msa0013040	Msa0252880	0.806694	7.262705e-50	-8.615850e-47
Msa0043120	Msa0252880	0.811448	6.964351e-51	-8.615850e-47
Msa0048950	Msa0252880	0.837184	6.038644e-57	-8.615850e-47
Msa0059880	Msa0252880	0.831763	1.388455e-55	-8.615850e-47
Msa0106110	Msa0252880	0.801544	8.563309e-49	-8.615850e-47
Msa0106120	Msa0252880	0.817603	3.026346e-52	-8.615850e-47
Msa0131460	Msa0252880	0.806785	6.950217e-50	-8.615850e-47
Msa0150910	Msa0252880	0.811091	8.327804e-51	-8.615850e-47
Msa0152660	Msa0252880	0.805529	1.277231e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0252880	MtrunA17_Chr2g0311701	91.057	369	33	0	326	694	13	381	0.0	701
Msa0252880	MtrunA17_Chr2g0311681	84.824	369	56	0	320	688	1	369	0.0	664
Msa0252880	MtrunA17_Chr2g0311721	96.914	324	10	0	1	324	1	324	0.0	655
Msa0252880	MtrunA17_Chr2g0311691	82.432	370	65	0	320	689	1	370	0.0	649
Msa0252880	MtrunA17_Chr2g0311711	82.920	363	59	1	326	688	11	370	0.0	636
Msa0252880	MtrunA17_Chr2g0311741	71.988	332	87	2	357	688	2	327	1.33e-173	498
Msa0252880	MtrunA17_Chr1g0187821	58.333	372	148	3	320	688	3	370	2.58e-153	448
Msa0252880	MtrunA17_Chr7g0235951	57.500	360	149	3	330	688	17	373	1.33e-151	444
Msa0252880	MtrunA17_Chr1g0187831	56.098	369	154	4	324	687	8	373	2.45e-149	439
Msa0252880	MtrunA17_Chr1g0187811	57.766	367	145	4	330	688	129	493	4.72e-149	442

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0252880	AT3G07720.1	69.716	317	96	0	4	320	6	322	4.47e-166	480
Msa0252880	AT1G06620.1	55.432	359	154	3	331	688	12	365	6.58e-139	412
Msa0252880	AT5G59540.1	51.351	370	173	4	322	688	1	366	3.70e-130	389
Msa0252880	AT2G30840.1	53.719	363	159	5	330	688	5	362	1.93e-129	387
Msa0252880	AT5G59530.1	52.717	368	164	6	325	688	3	364	1.82e-127	382
Msa0252880	AT2G30830.1	51.923	364	160	6	330	688	5	358	1.83e-126	379
Msa0252880	AT1G06650.2	49.600	375	160	7	329	688	9	369	1.14e-124	375
Msa0252880	AT2G25450.1	52.066	363	168	4	327	688	2	359	2.15e-124	374
Msa0252880	AT1G06640.1	49.471	378	168	6	323	688	3	369	2.54e-124	374
Msa0252880	AT1G04350.1	51.934	362	164	5	330	688	6	360	4.99e-124	373

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Find 196 sgRNAs with CRISPR-Local

Find 325 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACATAATTGTATATGG+TGG	0.598952	2_2:-44476706	Msa0252880:CDS
AAAGAAGTATCTCTATATAT+TGG	0.335206	2_2:+44474026	None:intergenic
AAAGCTAGCATCTGAGTGCT+TGG	0.513732	2_2:+44474827	None:intergenic
AAAGGAATTTGATGAGTCAA+AGG	0.522155	2_2:-44476025	Msa0252880:CDS
AAAGTTGCAAGGGAAGAGGT+GGG	0.669531	2_2:-44476897	Msa0252880:CDS
AAATTCTTCATGACAATCAG+TGG	0.543081	2_2:-44474767	Msa0252880:CDS
AACAAGTGGGCTTAAACCAA+CGG	0.609427	2_2:-44476761	Msa0252880:CDS
AACAAGTTGAAAACACACTA+CGG	0.558479	2_2:+44476737	None:intergenic
AACACATAATTGTATATGGT+GGG	0.491224	2_2:-44476705	Msa0252880:CDS
AACATACACACGTCGGTCAT+CGG	0.519773	2_2:+44477011	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGTTGTATACGATAATGCAT+TGG	+	chr2_2:44473975-44473994	None:intergenic	30.0%
TTGTGAAATGAAAAATTGGG+GGG	-	chr2_2:44474213-44474232	Msa0252880:intron	30.0%
TATGCTATTGAAAACTAGAG+TGG	+	chr2_2:44474292-44474311	None:intergenic	30.0%
TGTTAGAGGAAAATTGAAGT+TGG	+	chr2_2:44474343-44474362	None:intergenic	30.0%
TCTGTTAAGTAAGATGTTAG+AGG	+	chr2_2:44474357-44474376	None:intergenic	30.0%
CCTACCTAAACTTAAGTAAA+AGG	+	chr2_2:44474688-44474707	None:intergenic	30.0%
CAGAAACTATTCAAGAATAC+TGG	+	chr2_2:44474971-44474990	None:intergenic	30.0%
AATGCTATCTAGTAGAATAC+TGG	+	chr2_2:44475031-44475050	None:intergenic	30.0%
TTGACACTAAAACCAACAAT+TGG	-	chr2_2:44475405-44475424	Msa0252880:intron	30.0%
TGACACTAAAACCAACAATT+GGG	-	chr2_2:44475406-44475425	Msa0252880:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	44473938	44478581	44473938	ID=Msa0252880;Name=Msa0252880
chr2_2	mRNA	44473938	44478581	44473938	ID=Msa0252880-mRNA-1;Parent=Msa0252880;Name=Msa0252880-mRNA-1;_AED=0.29;_eAED=0.29;_QI=112\|0.25\|0.2\|1\|1\|1\|5\|0\|694
chr2_2	exon	44473938	44474216	44473938	ID=Msa0252880-mRNA-1:exon:13644;Parent=Msa0252880-mRNA-1
chr2_2	exon	44474710	44475031	44474710	ID=Msa0252880-mRNA-1:exon:13643;Parent=Msa0252880-mRNA-1
chr2_2	exon	44475571	44476081	44475571	ID=Msa0252880-mRNA-1:exon:13642;Parent=Msa0252880-mRNA-1
chr2_2	exon	44476452	44477394	44476452	ID=Msa0252880-mRNA-1:exon:13641;Parent=Msa0252880-mRNA-1
chr2_2	exon	44478440	44478581	44478440	ID=Msa0252880-mRNA-1:exon:13640;Parent=Msa0252880-mRNA-1
chr2_2	five_prime_UTR	44478470	44478581	44478470	ID=Msa0252880-mRNA-1:five_prime_utr;Parent=Msa0252880-mRNA-1
chr2_2	CDS	44478440	44478469	44478440	ID=Msa0252880-mRNA-1:cds;Parent=Msa0252880-mRNA-1
chr2_2	CDS	44476452	44477394	44476452	ID=Msa0252880-mRNA-1:cds;Parent=Msa0252880-mRNA-1
chr2_2	CDS	44475571	44476081	44475571	ID=Msa0252880-mRNA-1:cds;Parent=Msa0252880-mRNA-1
chr2_2	CDS	44474710	44475031	44474710	ID=Msa0252880-mRNA-1:cds;Parent=Msa0252880-mRNA-1
chr2_2	CDS	44473938	44474216	44473938	ID=Msa0252880-mRNA-1:cds;Parent=Msa0252880-mRNA-1

Gene Sequence

>Msa0252880

ATGGCGATACTTCATGGCAGTTGGTTCAAGCTTGATCAAACAGGAATCTTGCAAGGAGCAAGAAGTTCACATGCTATTGCCGTAGTAGGACAGAAGGTCTATGCATTCGGCGGTGAGTTTGAGCCACGTGTCCCCGTTGATAACAAGTTACACGTGTACGACCTAGATACCTTGACATGGTCAGTAGCCGATGTATCCGGGAGCACACCGCCTCCACGTGTTGGTGTCACGATGGCTGCAGTTGGAGAAACCATCTATGTATTTGGTGGAAGAGATGCTGAACACAATGAACTCAATGAGCTCTATTCTTTTGACACTAAAACCAACAATTGGGCCTTGATTTCAAGTGGAGATGTTGGGCCTCCTAACCGTAGCTACCACTCCATGACTGCCGATGACCGACGTGTGTATGTTTTCGGTGGCTGTGGAGTGGCAGGAAGGCTCAATGATTTATGGGCCTTTGATGTTGTGGATGGCAAGTGGGTGGAATTTCCATCTCCTGGTGAAAGTTGCAAGGGAAGAGGTGGGCCGGGCCTAACAGTGGCCCAGGGAAAAATATGGGTTGTGTATGGTTTCGCTGGAATGGAAGTGGATGACGTGCATTTCTTCGACCTGGCCCAAAAAACATGGGCCCAAGTGGAAACAAGTGGGCTTAAACCAACGGCCCGTAGTGTGTTTTCAACTTGTTTAATTGGGAAACACATAATTGTATATGGTGGGGAAATAGACCCTAGTGACCAAGGTCACATGGGTGCTGGTCAATTTTCAGGTGAGCTTTATGCATTAGACACGGAGACACTATCATGGACGAGGTTGGACGATAAAGTGGAATCAGGTGATCATCCAGGGCCACGTGGGTGGTGCGCATTTGCCGGTGCTAGCCGAGGCAGCCAAGAGGGATTATTAGTGTATGGTGGCAACTCACCTAGCAACGACAGGCTTGATGACATTTTCTTCCTTGCTCTTGCTCAAAGAAATGCTCAAATTTATGACAGAAAAAGTGAACTAAAGGAATTTGATGAGTCAAAGGTTGGTGTCCAAGGACTCATAGAAAATGGTGTAACAAAAGTTCCACGCATGTTCTATTGTGAACAATCTAATATCAATCATGGTTCAGTCAATGAATCAAATTCAAAGCTTAGTGTCCCTACAATTGACTTAACAGGAATCCATGATGATCCTGTTTTGAGAGATGAAGTTGTAAGAAAAGTTCAAAATGCAAGTGAGAAATGGGGATTCTTTCAGGTAATAAATCATGGAATTCCAGTTCATGTTTTGGATGAGATGATCAAAGGGACACGTAGATTTCACCAGCAAGATGCTAAGGTGAGGAAGGAGTACTATACCCGTGATGTCACCAAAAAATTTGTTTATCTTTCCAATTTTACTCTTTATCAAGACCAATCTGCTGATTGGAGGGACACACTTGCATTTTTCTGGGCACCCGATCCTCCTAAAGCTGATGAACTACCACCGGTTTGCAGTGATATTGTGAATGAATACACAAAAGAAGTAATGGAACTTGGATCTTCTTTGTATGAGTTATTGTCAGAAGCTCTTGGCCTTAATCGCTTTCACCTTAAAGAAATGGGTGGTGCTGAGAGTTTTTTACATCTATGTCATTATTATCCACCATGCCCTGAGCCAGAGTTAACCATAGGCACTACCAAGCACTCAGATGCTAGCTTTATTACAGTACTTTTGCAAGATCATATTGGTGGCCTACAAATTCTTCATGACAATCAGTGGATTGATTTACCTCCCATTCATGGAGCTCTTGTAGTGAACATTGGAGATCTTCTACAGCTTGTGAGTAATGACAAGTTCACAAGTGTTCAGCACAGAGTTTTAGCAAAAAGTATAGGCCCAAGAATTTCAGCTGCAACCCTTTTTAGAACAGAAAATGATCATTCTCCCGAGGGCATACCGAAAGTGATTGGACCAATCAAGGAACTTTTATCTGAAGAAAACCCACCAATATATAGAGATACTTCTTTGAAAGAGTACTTGGCATATCGTTTTTCAAACGGTCTTGGAGCTTCTGCACTATCACCCTTCAAGTTGTTACACAAAGAAGCAACTTAG

Protein sequence

>Msa0252880

MAILHGSWFKLDQTGILQGARSSHAIAVVGQKVYAFGGEFEPRVPVDNKLHVYDLDTLTWSVADVSGSTPPPRVGVTMAAVGETIYVFGGRDAEHNELNELYSFDTKTNNWALISSGDVGPPNRSYHSMTADDRRVYVFGGCGVAGRLNDLWAFDVVDGKWVEFPSPGESCKGRGGPGLTVAQGKIWVVYGFAGMEVDDVHFFDLAQKTWAQVETSGLKPTARSVFSTCLIGKHIIVYGGEIDPSDQGHMGAGQFSGELYALDTETLSWTRLDDKVESGDHPGPRGWCAFAGASRGSQEGLLVYGGNSPSNDRLDDIFFLALAQRNAQIYDRKSELKEFDESKVGVQGLIENGVTKVPRMFYCEQSNINHGSVNESNSKLSVPTIDLTGIHDDPVLRDEVVRKVQNASEKWGFFQVINHGIPVHVLDEMIKGTRRFHQQDAKVRKEYYTRDVTKKFVYLSNFTLYQDQSADWRDTLAFFWAPDPPKADELPPVCSDIVNEYTKEVMELGSSLYELLSEALGLNRFHLKEMGGAESFLHLCHYYPPCPEPELTIGTTKHSDASFITVLLQDHIGGLQILHDNQWIDLPPIHGALVVNIGDLLQLVSNDKFTSVQHRVLAKSIGPRISAATLFRTENDHSPEGIPKVIGPIKELLSEENPPIYRDTSLKEYLAYRFSNGLGASALSPFKLLHKEAT*