Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1277340 | XP_003627485.1 | 97.026 | 538 | 13 | 2 | 1 | 536 | 1 | 537 | 0.0 | 1078 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1277340 | sp|Q9UUH0|YKIC_SCHPO | 28.982 | 383 | 239 | 13 | 8 | 383 | 6 | 362 | 7.46e-38 | 147 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1277340 | G7L9Y4 | 97.026 | 538 | 13 | 2 | 1 | 536 | 1 | 537 | 0.0 | 1078 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0143080 | Msa1277340 | -0.812443 | 4.229804e-51 | -8.615850e-47 |
| Msa0236980 | Msa1277340 | -0.809212 | 2.115541e-50 | -8.615850e-47 |
| Msa1236070 | Msa1277340 | 0.804022 | 2.636641e-49 | -8.615850e-47 |
| Msa1277340 | Msa1403580 | 0.803749 | 3.004944e-49 | -8.615850e-47 |
| Msa1277340 | Msa1443290 | 0.806382 | 8.450793e-50 | -8.615850e-47 |
| Msa1015060 | Msa1277340 | -0.810940 | 8.975699e-51 | -8.615850e-47 |
| Msa0243690 | Msa1277340 | -0.801739 | 7.812699e-49 | -8.615850e-47 |
| Msa0270220 | Msa1277340 | 0.800809 | 1.210605e-48 | -8.615850e-47 |
| Msa0307830 | Msa1277340 | 0.807217 | 5.629106e-50 | -8.615850e-47 |
| Msa0328210 | Msa1277340 | -0.802412 | 5.679076e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1277340 | MtrunA17_Chr8g0345491 | 97.026 | 538 | 13 | 2 | 1 | 536 | 1 | 537 | 0.0 | 1078 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1277340 | AT1G53710.1 | 54.851 | 536 | 228 | 6 | 3 | 536 | 4 | 527 | 0.0 | 629 |
| Msa1277340 | AT1G53710.2 | 55.727 | 454 | 190 | 5 | 3 | 454 | 4 | 448 | 0.0 | 541 |
Find 115 sgRNAs with CRISPR-Local
Find 310 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAACCAGGTTTCCTAATT+TGG | 0.125421 | 8_3:+12557845 | Msa1277340:five_prime_UTR |
| AACTTTACCTGATTGATAAT+TGG | 0.127577 | 8_3:-12561363 | None:intergenic |
| ATGTTACACTCTTCCAAATT+AGG | 0.174319 | 8_3:-12557858 | None:intergenic |
| CATGCTTCTGTATGTTTAAT+TGG | 0.185466 | 8_3:+12563575 | Msa1277340:three_prime_UTR |
| ACCTACTTGTACTATCTAAT+TGG | 0.193118 | 8_3:-12563518 | None:intergenic |
| CACCTCTCTTTACTTGTTCA+TGG | 0.195709 | 8_3:+12558016 | Msa1277340:CDS |
| AATCGCTTAAAACGTATATT+TGG | 0.200628 | 8_3:+12559987 | Msa1277340:CDS |
| TTGTTCATGGCCTCATTTAA+TGG | 0.204522 | 8_3:+12558029 | Msa1277340:CDS |
| CTGGCATCAGTGTTGGAATT+TGG | 0.239549 | 8_3:+12562536 | Msa1277340:CDS |
| AATTAGGAAACCTGGTTTCT+TGG | 0.247721 | 8_3:-12557842 | None:intergenic |
| TGTGTCAACAAAGGCTCTTC+TGG | 0.253975 | 8_3:-12562137 | None:intergenic |
| TACGTTCTTACCTCCTTTAT+AGG | 0.261554 | 8_3:-12561958 | None:intergenic |
| ATGGTGAAATGTTATCTTAC+TGG | 0.271109 | 8_3:+12557989 | Msa1277340:CDS |
| TTTCTCTGTGAATATGGATA+TGG | 0.285848 | 8_3:+12563248 | Msa1277340:CDS |
| ACTTTACCTGATTGATAATT+GGG | 0.292551 | 8_3:-12561362 | None:intergenic |
| AGCAGATTTCTCTGTGAATA+TGG | 0.297086 | 8_3:+12563242 | Msa1277340:CDS |
| CTTTCTTACTATGTCTCATA+TGG | 0.308924 | 8_3:+12557950 | Msa1277340:CDS |
| TCTTTGTTACAACAAAATAT+TGG | 0.321495 | 8_3:-12563483 | None:intergenic |
| ATAACCAATATCATGGTTTC+CGG | 0.326332 | 8_3:-12560057 | None:intergenic |
| ATCTAAATCCGGGCCTATAA+AGG | 0.336684 | 8_3:+12561945 | Msa1277340:CDS |
| GAAGTGTGCGTAGTAATCTT+TGG | 0.337715 | 8_3:-12563344 | None:intergenic |
| TTACATGATGTTGCTATTCA+AGG | 0.338720 | 8_3:+12563404 | Msa1277340:CDS |
| TACTCTTCGTCTGATAAATA+AGG | 0.341310 | 8_3:-12559048 | None:intergenic |
| ATTCCCGGAAACCATGATAT+TGG | 0.349714 | 8_3:+12560053 | Msa1277340:CDS |
| AAGCTAAAAGTTGTTTGAAA+TGG | 0.364445 | 8_3:-12562563 | None:intergenic |
| CCCTCCTAGCCCTCTTACTC+TGG | 0.369428 | 8_3:+12562493 | Msa1277340:CDS |
| GTCGATTCACAAACTCTTGA+TGG | 0.370887 | 8_3:+12560867 | Msa1277340:CDS |
| CAACAAGTAACACAAGTTTC+TGG | 0.381036 | 8_3:+12562517 | Msa1277340:CDS |
| GTATCATCCGGTCGATATAA+AGG | 0.386360 | 8_3:-12561315 | None:intergenic |
| AGACGCTACGAGGAAACATT+TGG | 0.387729 | 8_3:+12560798 | Msa1277340:CDS |
| ATATAAATGTGAAATTGCTT+TGG | 0.391993 | 8_3:-12562173 | None:intergenic |
| TGGGCACTTACCCTTCTCTA+TGG | 0.397010 | 8_3:+12557970 | Msa1277340:CDS |
| ATCACTCATCAATCTAAATC+CGG | 0.406320 | 8_3:+12561934 | Msa1277340:CDS |
| AGCATCTGACTTCTCAAACT+TGG | 0.408865 | 8_3:+12561144 | Msa1277340:CDS |
| GACTTTCATAACCAATATCA+TGG | 0.421404 | 8_3:-12560064 | None:intergenic |
| TCTTCTGGAATGGAAGCATT+TGG | 0.422036 | 8_3:-12562122 | None:intergenic |
| TACTTCCCCAATTATCAATC+AGG | 0.426517 | 8_3:+12561356 | Msa1277340:CDS |
| CAGAAACTTGTGTTACTTGT+TGG | 0.428628 | 8_3:-12562516 | None:intergenic |
| TTTCCGGGAATGTAGTAAAC+TGG | 0.430803 | 8_3:-12560041 | None:intergenic |
| AAGCCAGTTTACTACATTCC+CGG | 0.433945 | 8_3:+12560038 | Msa1277340:CDS |
| CTCTTCCAAATTAGGAAACC+TGG | 0.437552 | 8_3:-12557850 | None:intergenic |
| GCATCTGACTTCTCAAACTT+GGG | 0.442918 | 8_3:+12561145 | Msa1277340:CDS |
| ATTTACAGTGGATGACTTCA+AGG | 0.446526 | 8_3:-12562688 | None:intergenic |
| TGATGTTGCTATTCAAGGAT+TGG | 0.450159 | 8_3:+12563409 | Msa1277340:CDS |
| AATTCAAATGAAAGAGGCTT+AGG | 0.454434 | 8_3:+12562708 | Msa1277340:CDS |
| TGACATCGGGCTTGAAAGGC+AGG | 0.456835 | 8_3:-12558993 | None:intergenic |
| TTGGCCAGAGTAAGAGGGCT+AGG | 0.467040 | 8_3:-12562497 | None:intergenic |
| TACTTGTTGGCCAGAGTAAG+AGG | 0.471931 | 8_3:-12562503 | None:intergenic |
| AGCAATTTCACATTTATATG+TGG | 0.472099 | 8_3:+12562177 | Msa1277340:CDS |
| ATGAAAGAGGCTTAGGAGAA+AGG | 0.472178 | 8_3:+12562715 | Msa1277340:CDS |
| AATATGACATCGGGCTTGAA+AGG | 0.476084 | 8_3:-12558997 | None:intergenic |
| GCATCAGTGTTGGAATTTGG+TGG | 0.480820 | 8_3:+12562539 | Msa1277340:CDS |
| TCCAGTGCAAGAGATTTCTC+TGG | 0.482661 | 8_3:-12558916 | None:intergenic |
| TGCTATTATTGCAGATCCAC+AGG | 0.486210 | 8_3:+12558346 | Msa1277340:CDS |
| CAACAAAGGCTCTTCTGGAA+TGG | 0.488636 | 8_3:-12562132 | None:intergenic |
| TAACCAATATCATGGTTTCC+GGG | 0.488932 | 8_3:-12560056 | None:intergenic |
| CATCATCTCATATTCATAGT+TGG | 0.491932 | 8_3:-12562628 | None:intergenic |
| TAAGGTTATACCATTAAATG+AGG | 0.492348 | 8_3:-12558039 | None:intergenic |
| TCCAGAGAAATCTCTTGCAC+TGG | 0.492822 | 8_3:+12558915 | Msa1277340:CDS |
| CAAGTTTCTGGCATCAGTGT+TGG | 0.495418 | 8_3:+12562529 | Msa1277340:CDS |
| TTTCTTACTATGTCTCATAT+GGG | 0.496760 | 8_3:+12557951 | Msa1277340:CDS |
| ATAATTGGGGAAGTACGATC+AGG | 0.498148 | 8_3:-12561348 | None:intergenic |
| TGGATATGGCTTCAACCATC+GGG | 0.500859 | 8_3:+12563262 | Msa1277340:CDS |
| GACGCTACGAGGAAACATTT+GGG | 0.501153 | 8_3:+12560799 | Msa1277340:CDS |
| ATGTGCGTTAATAAGACTCT+TGG | 0.503310 | 8_3:-12561291 | None:intergenic |
| AGAAACTACAAATTTGCAGT+TGG | 0.503911 | 8_3:+12560825 | Msa1277340:CDS |
| ATGGATATGGCTTCAACCAT+CGG | 0.507477 | 8_3:+12563261 | Msa1277340:CDS |
| CAAGAGATTTCTCTGGAAGA+TGG | 0.512359 | 8_3:-12558909 | None:intergenic |
| ACTGTAAATTCAAATGAAAG+AGG | 0.513555 | 8_3:+12562702 | Msa1277340:CDS |
| AATAGCAACATCATGTAAAG+AGG | 0.517061 | 8_3:-12563399 | None:intergenic |
| TTTAGAGGATACATCACGCT+TGG | 0.527891 | 8_3:+12561546 | Msa1277340:intron |
| TCTTACCTCCTTTATAGGCC+CGG | 0.534439 | 8_3:-12561953 | None:intergenic |
| GCACATTCCTTTATATCGAC+CGG | 0.543448 | 8_3:+12561308 | Msa1277340:CDS |
| CCAGAGTAAGAGGGCTAGGA+GGG | 0.547896 | 8_3:-12562493 | None:intergenic |
| CATCAGTGTTGGAATTTGGT+GGG | 0.548187 | 8_3:+12562540 | Msa1277340:CDS |
| ACCTTGCTTTGAATTCATTG+AGG | 0.548691 | 8_3:+12557901 | Msa1277340:five_prime_UTR |
| AGTAGCGTGCAGCACACTCT+AGG | 0.551919 | 8_3:+12562029 | Msa1277340:intron |
| ACACTCTAGGTACTATAAGC+TGG | 0.553572 | 8_3:+12562042 | Msa1277340:CDS |
| ACTGATAGCAGCATGAAAGA+AGG | 0.554376 | 8_3:-12562083 | None:intergenic |
| TTTGTAAAGAATATCTCTGT+AGG | 0.554390 | 8_3:+12561170 | Msa1277340:CDS |
| TGAAACAAAAGAGAAGGATG+AGG | 0.565254 | 8_3:+12562602 | Msa1277340:CDS |
| ATAACATTTCACCATAGAGA+AGG | 0.572278 | 8_3:-12557981 | None:intergenic |
| TGAGAAGTCAGATGCTTCTG+TGG | 0.578114 | 8_3:-12561137 | None:intergenic |
| TCACTCATCAATCTAAATCC+GGG | 0.584269 | 8_3:+12561935 | Msa1277340:CDS |
| GCCAGAGTAAGAGGGCTAGG+AGG | 0.585031 | 8_3:-12562494 | None:intergenic |
| TTTACAGTGGATGACTTCAA+GGG | 0.585507 | 8_3:-12562687 | None:intergenic |
| GAGAAGTCAGATGCTTCTGT+GGG | 0.585694 | 8_3:-12561136 | None:intergenic |
| TCCTCAATGAATTCAAAGCA+AGG | 0.587425 | 8_3:-12557902 | None:intergenic |
| TTAGGTGATTACTTCGATGG+AGG | 0.591697 | 8_3:+12559024 | Msa1277340:CDS |
| ACTATGAATATGAGATGATG+TGG | 0.591849 | 8_3:+12562631 | Msa1277340:CDS |
| TGCTAGAGGATCAAGCCCGA+TGG | 0.595792 | 8_3:-12563277 | None:intergenic |
| ATATTTGGTTTGAATGCACA+AGG | 0.598687 | 8_3:+12560002 | Msa1277340:CDS |
| CTTTACCTGATTGATAATTG+GGG | 0.599136 | 8_3:-12561361 | None:intergenic |
| TGGTGCATTGATCATGATCA+TGG | 0.602304 | 8_3:-12561912 | None:intergenic |
| TAACATTTCACCATAGAGAA+GGG | 0.609527 | 8_3:-12557980 | None:intergenic |
| ACTTGTTGGCCAGAGTAAGA+GGG | 0.611472 | 8_3:-12562502 | None:intergenic |
| GGATTTAGATTGATGAGTGA+TGG | 0.611543 | 8_3:-12561932 | None:intergenic |
| TCTTTCATTTGAATTTACAG+TGG | 0.622851 | 8_3:-12562700 | None:intergenic |
| TAACATAGATGTGTCAACAA+AGG | 0.627774 | 8_3:-12562146 | None:intergenic |
| GGTACTATAAGCTGGCAACA+AGG | 0.631008 | 8_3:+12562050 | Msa1277340:CDS |
| ACCAATTAGATAGTACAAGT+AGG | 0.632426 | 8_3:+12563517 | Msa1277340:three_prime_UTR |
| ATAGCAACATCATGTAAAGA+GGG | 0.633257 | 8_3:-12563398 | None:intergenic |
| TAAATCCGGGCCTATAAAGG+AGG | 0.637564 | 8_3:+12561948 | Msa1277340:CDS |
| TCTTCATTATGCAATGCCAA+AGG | 0.643418 | 8_3:+12560085 | Msa1277340:CDS |
| TAATTGGGGAAGTACGATCA+GGG | 0.646982 | 8_3:-12561347 | None:intergenic |
| AAAGAAAAGACCAAGAAACC+AGG | 0.662406 | 8_3:+12557832 | Msa1277340:five_prime_UTR |
| GGCCATGAACAAGTAAAGAG+AGG | 0.666525 | 8_3:-12558018 | None:intergenic |
| TTTGATTTGCCTGTTCTGGG+AGG | 0.667942 | 8_3:-12563306 | None:intergenic |
| CCAGGGGTAATGTTGTATTG+CGG | 0.669455 | 8_3:+12563190 | Msa1277340:intron |
| CATGAACAAGTAAAGAGAGG+TGG | 0.671829 | 8_3:-12558015 | None:intergenic |
| CGACCGGATGATACTTACTG+TGG | 0.678143 | 8_3:+12561324 | Msa1277340:CDS |
| GAGATGATGTGGGATGCAGA+AGG | 0.690298 | 8_3:+12562642 | Msa1277340:CDS |
| CTATGAATATGAGATGATGT+GGG | 0.698399 | 8_3:+12562632 | Msa1277340:CDS |
| ACATACAGAAGCATGAACAG+TGG | 0.714536 | 8_3:-12563567 | None:intergenic |
| ATAGGTTATCAGACGCTACG+AGG | 0.719157 | 8_3:+12560788 | Msa1277340:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATCTTGTATATATTAA+TGG | + | chr8_3:12558765-12558784 | Msa1277340:intron | 10.0% |
| !! | AAATTTAATATTTGTTTCAA+AGG | + | chr8_3:12559433-12559452 | Msa1277340:intron | 10.0% |
| !!! | TTTTTGTTATTTTTAAATTG+CGG | + | chr8_3:12562328-12562347 | Msa1277340:intron | 10.0% |
| !!! | TTTTGTAAGTTATGAAATTT+TGG | + | chr8_3:12558120-12558139 | Msa1277340:intron | 15.0% |
| !!! | TATTATGTTTTTGATTTTGT+TGG | + | chr8_3:12558178-12558197 | Msa1277340:intron | 15.0% |
| !! | AATTAAATCCTTAACATTTA+TGG | - | chr8_3:12558422-12558441 | None:intergenic | 15.0% |
| !! | ACAAATAGATATTTGTTTAT+AGG | - | chr8_3:12559077-12559096 | None:intergenic | 15.0% |
| !!! | AAGGATTATTTTTTACAATA+AGG | + | chr8_3:12559452-12559471 | Msa1277340:intron | 15.0% |
| !! | TTTATATGCTAAAAAGTAAA+GGG | + | chr8_3:12559812-12559831 | Msa1277340:intron | 15.0% |
| !! | TCATAAAAGAATTTCATATA+AGG | - | chr8_3:12559935-12559954 | None:intergenic | 15.0% |
| !!! | GAAATTCTTTTATGATTTTT+TGG | + | chr8_3:12559940-12559959 | Msa1277340:intron | 15.0% |
| !! | AAATGAAAACATAAACTAAA+TGG | - | chr8_3:12561853-12561872 | None:intergenic | 15.0% |
| !!! | ATTTTTAGAACTTTTGATTT+TGG | + | chr8_3:12561869-12561888 | Msa1277340:intron | 15.0% |
| !! | AAAATAGCTTATAACTTATA+TGG | + | chr8_3:12563004-12563023 | Msa1277340:intron | 15.0% |
| !!! | TTTTCACTTTTTTCAATTCT+GGG | + | chr8_3:12558073-12558092 | Msa1277340:intron | 20.0% |
| !!! | TTTTGTTGGAAATTAATTTG+CGG | + | chr8_3:12558192-12558211 | Msa1277340:intron | 20.0% |
| !! | ACATATTACCATAAATGTTA+AGG | + | chr8_3:12558411-12558430 | Msa1277340:intron | 20.0% |
| !! | ATATCCACTGATATATATTA+AGG | + | chr8_3:12558443-12558462 | Msa1277340:intron | 20.0% |
| !! | AAATCCTTAATATATATCAG+TGG | - | chr8_3:12558450-12558469 | None:intergenic | 20.0% |
| !!! | TTTGTGTTTTATTTTTGTCT+CGG | + | chr8_3:12558539-12558558 | Msa1277340:intron | 20.0% |
| !! | ACAAATATCTATTTGTGATT+TGG | + | chr8_3:12559081-12559100 | Msa1277340:intron | 20.0% |
| !!! | TATGTTGTTTCATAAATGAA+AGG | - | chr8_3:12559193-12559212 | None:intergenic | 20.0% |
| !! | AATAAGTTAAAAGAAGCTTA+TGG | + | chr8_3:12559330-12559349 | Msa1277340:intron | 20.0% |
| !! | ATGATAATAGTTTCTTTAGA+TGG | - | chr8_3:12559531-12559550 | None:intergenic | 20.0% |
| !! | AATTTATAGACATGATTATC+TGG | + | chr8_3:12559578-12559597 | Msa1277340:intron | 20.0% |
| !! | AGAAGATACATATGTATTTA+TGG | - | chr8_3:12559647-12559666 | None:intergenic | 20.0% |
| !! | GTTTATATGCTAAAAAGTAA+AGG | + | chr8_3:12559811-12559830 | Msa1277340:intron | 20.0% |
| !!! | TATGTGTTTGAAATTTATCA+GGG | - | chr8_3:12559842-12559861 | None:intergenic | 20.0% |
| !!! | ATTTAAAATCAACAACACTA+AGG | - | chr8_3:12560301-12560320 | None:intergenic | 20.0% |
| !!! | AGTGTTGTTGATTTTAAATT+TGG | + | chr8_3:12560302-12560321 | Msa1277340:intron | 20.0% |
| !! | GATTAACTTAATATGTGATT+TGG | - | chr8_3:12560611-12560630 | None:intergenic | 20.0% |
| !!! | GAATTCATTATATTTTCTAC+AGG | + | chr8_3:12561110-12561129 | Msa1277340:intron | 20.0% |
| !! | AGTAAAGTAAAAAAAACTTG+TGG | - | chr8_3:12561255-12561274 | None:intergenic | 20.0% |
| !!! | TCTCTTTCTTTAATTTTTAG+AGG | + | chr8_3:12561531-12561550 | Msa1277340:intron | 20.0% |
| !! | ATATAAATGTGAAATTGCTT+TGG | - | chr8_3:12562176-12562195 | None:intergenic | 20.0% |
| !!! | AGATTTTCTATAAGAGAAAA+CGG | + | chr8_3:12562246-12562265 | Msa1277340:intron | 20.0% |
| !! | TAAAAATGAAACAAAAGAGA+AGG | + | chr8_3:12562596-12562615 | Msa1277340:CDS | 20.0% |
| !! | TCTCTAATATTTAACAGATT+TGG | - | chr8_3:12563130-12563149 | None:intergenic | 20.0% |
| !! | TCTTTGTTACAACAAAATAT+TGG | - | chr8_3:12563486-12563505 | None:intergenic | 20.0% |
| ! | TTTCTTACTATGTCTCATAT+GGG | + | chr8_3:12557951-12557970 | Msa1277340:CDS | 25.0% |
| ! | TAAGGTTATACCATTAAATG+AGG | - | chr8_3:12558042-12558061 | None:intergenic | 25.0% |
| !!! | CTTTTCACTTTTTTCAATTC+TGG | + | chr8_3:12558072-12558091 | Msa1277340:intron | 25.0% |
| !! | CAACTTTTACATAATCAGTT+TGG | - | chr8_3:12558328-12558347 | None:intergenic | 25.0% |
| !!! | AGTACATGCCATTTTAATAT+CGG | - | chr8_3:12558517-12558536 | None:intergenic | 25.0% |
| !!! | TCATCATTTTTGTATGACTT+AGG | - | chr8_3:12558703-12558722 | None:intergenic | 25.0% |
| ! | CATACAAAAATGATGATTTG+TGG | + | chr8_3:12558707-12558726 | Msa1277340:intron | 25.0% |
| ! | TTTATTAATGTATGTCTCTG+TGG | + | chr8_3:12558825-12558844 | Msa1277340:intron | 25.0% |
| !!! | TTTTTTAACATATCAGCTCA+TGG | + | chr8_3:12558873-12558892 | Msa1277340:intron | 25.0% |
| ! | ACCTAAAAACAATATGACAT+CGG | - | chr8_3:12559010-12559029 | None:intergenic | 25.0% |
| ! | AACATTTCACATAGCATAAT+AGG | - | chr8_3:12559139-12559158 | None:intergenic | 25.0% |
| ! | AATTCCAAAATCATCAGAAA+AGG | - | chr8_3:12559163-12559182 | None:intergenic | 25.0% |
| ! | CATTTATGAAACAACATAGA+TGG | + | chr8_3:12559195-12559214 | Msa1277340:intron | 25.0% |
| ! | TTCATTTAGCAAACTATTCT+AGG | + | chr8_3:12559259-12559278 | Msa1277340:intron | 25.0% |
| ! | TCATTTAGCAAACTATTCTA+GGG | + | chr8_3:12559260-12559279 | Msa1277340:intron | 25.0% |
| !! | CTGTCAATTATTTGAAATGA+GGG | - | chr8_3:12559747-12559766 | None:intergenic | 25.0% |
| !! | ATGTGTTTGAAATTTATCAG+GGG | - | chr8_3:12559841-12559860 | None:intergenic | 25.0% |
| !! | CTATGTGTTTGAAATTTATC+AGG | - | chr8_3:12559843-12559862 | None:intergenic | 25.0% |
| ! | ATTTCAAACACATAGTTGTT+TGG | + | chr8_3:12559848-12559867 | Msa1277340:intron | 25.0% |
| ! | AATCGCTTAAAACGTATATT+TGG | + | chr8_3:12559987-12560006 | Msa1277340:CDS | 25.0% |
| !!! | TGTGCTATTGATATTTTCTA+AGG | + | chr8_3:12560399-12560418 | Msa1277340:intron | 25.0% |
| ! | GGATTAATATAAATGAGACA+TGG | + | chr8_3:12560420-12560439 | Msa1277340:intron | 25.0% |
| ! | CATTCTATAAACTACAGATT+GGG | - | chr8_3:12560673-12560692 | None:intergenic | 25.0% |
| ! | TTTGTAAAGAATATCTCTGT+AGG | + | chr8_3:12561170-12561189 | Msa1277340:CDS | 25.0% |
| !! | AAAAACTTGTGGATTATTAC+AGG | - | chr8_3:12561244-12561263 | None:intergenic | 25.0% |
| !! | ACTTTACCTGATTGATAATT+GGG | - | chr8_3:12561365-12561384 | None:intergenic | 25.0% |
| !! | AACTTTACCTGATTGATAAT+TGG | - | chr8_3:12561366-12561385 | None:intergenic | 25.0% |
| ! | AGCAATTTCACATTTATATG+TGG | + | chr8_3:12562177-12562196 | Msa1277340:CDS | 25.0% |
| ! | TTTCACATTTATATGTGGTA+TGG | + | chr8_3:12562182-12562201 | Msa1277340:intron | 25.0% |
| ! | TTTCTCTTATAGAAAATCTC+AGG | - | chr8_3:12562245-12562264 | None:intergenic | 25.0% |
| !! | GATTTTCTATAAGAGAAAAC+GGG | + | chr8_3:12562247-12562266 | Msa1277340:intron | 25.0% |
| ! | CAAAAATATTGAAGTCTCAA+TGG | - | chr8_3:12562314-12562333 | None:intergenic | 25.0% |
| !! | TCATGTAAAACAGTTTTACA+CGG | - | chr8_3:12562401-12562420 | None:intergenic | 25.0% |
| ! | AAGCTAAAAGTTGTTTGAAA+TGG | - | chr8_3:12562566-12562585 | None:intergenic | 25.0% |
| ! | TCTTTCATTTGAATTTACAG+TGG | - | chr8_3:12562703-12562722 | None:intergenic | 25.0% |
| ! | ACTGTAAATTCAAATGAAAG+AGG | + | chr8_3:12562702-12562721 | Msa1277340:CDS | 25.0% |
| ! | AATAAGCTGAAAATAGTTGA+CGG | - | chr8_3:12562958-12562977 | None:intergenic | 25.0% |
| !! | ATTTTCATAAGTCTCCATAA+TGG | + | chr8_3:12562975-12562994 | Msa1277340:intron | 25.0% |
| ATGTTACACTCTTCCAAATT+AGG | - | chr8_3:12557861-12557880 | None:intergenic | 30.0% | |
| CTTTCTTACTATGTCTCATA+TGG | + | chr8_3:12557950-12557969 | Msa1277340:CDS | 30.0% | |
| TAACATTTCACCATAGAGAA+GGG | - | chr8_3:12557983-12558002 | None:intergenic | 30.0% | |
| ATAACATTTCACCATAGAGA+AGG | - | chr8_3:12557984-12558003 | None:intergenic | 30.0% | |
| ATGGTGAAATGTTATCTTAC+TGG | + | chr8_3:12557989-12558008 | Msa1277340:CDS | 30.0% | |
| GTGAAAAGATGAAGACTTTA+AGG | - | chr8_3:12558060-12558079 | None:intergenic | 30.0% | |
| !!! | AATTAATTTGCGGAGTTTTG+TGG | + | chr8_3:12558202-12558221 | Msa1277340:intron | 30.0% |
| ATTGAAGACTCATTTCAATC+AGG | + | chr8_3:12558478-12558497 | Msa1277340:intron | 30.0% | |
| TTGAAGACTCATTTCAATCA+GGG | + | chr8_3:12558479-12558498 | Msa1277340:intron | 30.0% | |
| ! | CAAAAATGATGATTTGTGGT+TGG | + | chr8_3:12558711-12558730 | Msa1277340:intron | 30.0% |
| CCTAAAAACAATATGACATC+GGG | - | chr8_3:12559009-12559028 | None:intergenic | 30.0% | |
| !!! | TTTTTAGGTGATTACTTCGA+TGG | + | chr8_3:12559021-12559040 | Msa1277340:CDS | 30.0% |
| TACTCTTCGTCTGATAAATA+AGG | - | chr8_3:12559051-12559070 | None:intergenic | 30.0% | |
| ! | GTTTCCTTTTCTGATGATTT+TGG | + | chr8_3:12559156-12559175 | Msa1277340:intron | 30.0% |
| AAGAAGCTTATGGACATAAA+AGG | + | chr8_3:12559340-12559359 | Msa1277340:intron | 30.0% | |
| ! | ATTTTCAGTGCAATTCTTTG+TGG | - | chr8_3:12559561-12559580 | None:intergenic | 30.0% |
| !!! | TTATGGTTTTGTCATGCATT+TGG | - | chr8_3:12559630-12559649 | None:intergenic | 30.0% |
| ! | TATTTGAAATGAGGGATTCA+GGG | - | chr8_3:12559739-12559758 | None:intergenic | 30.0% |
| ! | TTATTTGAAATGAGGGATTC+AGG | - | chr8_3:12559740-12559759 | None:intergenic | 30.0% |
| ! | GCTGTCAATTATTTGAAATG+AGG | - | chr8_3:12559748-12559767 | None:intergenic | 30.0% |
| CGTGAAAATATTGTTTCCTT+TGG | + | chr8_3:12559880-12559899 | Msa1277340:intron | 30.0% | |
| !! | ATATTTGGTTTGAATGCACA+AGG | + | chr8_3:12560002-12560021 | Msa1277340:CDS | 30.0% |
| ATAACCAATATCATGGTTTC+CGG | - | chr8_3:12560060-12560079 | None:intergenic | 30.0% | |
| GACTTTCATAACCAATATCA+TGG | - | chr8_3:12560067-12560086 | None:intergenic | 30.0% | |
| AGAACATGTTGAAATACCTT+TGG | - | chr8_3:12560104-12560123 | None:intergenic | 30.0% | |
| !! | TTGATGTTTAAGTTGCCAAA+AGG | + | chr8_3:12560134-12560153 | Msa1277340:intron | 30.0% |
| CTATGTATTGTAAATACCAC+CGG | - | chr8_3:12560166-12560185 | None:intergenic | 30.0% | |
| TTTACAATACATAGCTACGA+TGG | + | chr8_3:12560172-12560191 | Msa1277340:intron | 30.0% | |
| ATAACTATACTCAAGATCTC+AGG | + | chr8_3:12560252-12560271 | Msa1277340:intron | 30.0% | |
| TAACTATACTCAAGATCTCA+GGG | + | chr8_3:12560253-12560272 | Msa1277340:intron | 30.0% | |
| ! | AAATGAGACATGGTAGATTT+TGG | + | chr8_3:12560430-12560449 | Msa1277340:intron | 30.0% |
| !!! | ATTTTGGTTGCAAGTATGAA+AGG | + | chr8_3:12560446-12560465 | Msa1277340:intron | 30.0% |
| AACTCGTGTAAAATGACATA+TGG | + | chr8_3:12560537-12560556 | Msa1277340:intron | 30.0% | |
| AGATTGGGAATTATGCAAAA+TGG | - | chr8_3:12560658-12560677 | None:intergenic | 30.0% | |
| GCATTCTATAAACTACAGAT+TGG | - | chr8_3:12560674-12560693 | None:intergenic | 30.0% | |
| !! | TTTTAACTGTGTACTTCCTT+TGG | + | chr8_3:12560721-12560740 | Msa1277340:intron | 30.0% |
| AGAAACTACAAATTTGCAGT+TGG | + | chr8_3:12560825-12560844 | Msa1277340:CDS | 30.0% | |
| ! | AAACTCTTGATGGTAAACTT+GGG | + | chr8_3:12560877-12560896 | Msa1277340:intron | 30.0% |
| TGAGCTATCATGTTTCATTA+TGG | + | chr8_3:12560915-12560934 | Msa1277340:intron | 30.0% | |
| ATATCTCTGTAGGTATAAAC+TGG | + | chr8_3:12561180-12561199 | Msa1277340:intron | 30.0% | |
| AAACAATGAATCAGATGTAC+AGG | - | chr8_3:12561206-12561225 | None:intergenic | 30.0% | |
| TGTACATCTGATTCATTGTT+TGG | + | chr8_3:12561205-12561224 | Msa1277340:intron | 30.0% | |
| ! | CTTTACCTGATTGATAATTG+GGG | - | chr8_3:12561364-12561383 | None:intergenic | 30.0% |
| TACGTAAGTTACTCATCTTA+TGG | + | chr8_3:12561589-12561608 | Msa1277340:intron | 30.0% | |
| ACATAATTCTGATACCTGAA+TGG | - | chr8_3:12561678-12561697 | None:intergenic | 30.0% | |
| ATCACTCATCAATCTAAATC+CGG | + | chr8_3:12561934-12561953 | Msa1277340:CDS | 30.0% | |
| ! | AAGAACGTAATTTTCTCATC+TGG | + | chr8_3:12561972-12561991 | Msa1277340:intron | 30.0% |
| ! | AGAACGTAATTTTCTCATCT+GGG | + | chr8_3:12561973-12561992 | Msa1277340:intron | 30.0% |
| TAACATAGATGTGTCAACAA+AGG | - | chr8_3:12562149-12562168 | None:intergenic | 30.0% | |
| !!! | AAACTAGTTTTACACTGATG+CGG | + | chr8_3:12562287-12562306 | Msa1277340:intron | 30.0% |
| TTTAAATTGCGGTTACAATG+AGG | + | chr8_3:12562339-12562358 | Msa1277340:intron | 30.0% | |
| ! | ACCGTGCATTTTCATTAAAT+TGG | + | chr8_3:12562421-12562440 | Msa1277340:intron | 30.0% |
| GCCAATTTAATGAAAATGCA+CGG | - | chr8_3:12562425-12562444 | None:intergenic | 30.0% | |
| CATCATCTCATATTCATAGT+TGG | - | chr8_3:12562631-12562650 | None:intergenic | 30.0% | |
| ACTATGAATATGAGATGATG+TGG | + | chr8_3:12562631-12562650 | Msa1277340:CDS | 30.0% | |
| CTATGAATATGAGATGATGT+GGG | + | chr8_3:12562632-12562651 | Msa1277340:CDS | 30.0% | |
| AATTCAAATGAAAGAGGCTT+AGG | + | chr8_3:12562708-12562727 | Msa1277340:CDS | 30.0% | |
| CTAAGAAATCACAGTTATCT+AGG | - | chr8_3:12562806-12562825 | None:intergenic | 30.0% | |
| ! | CTGATTTGAACTTATCTACT+AGG | + | chr8_3:12562871-12562890 | Msa1277340:intron | 30.0% |
| CAGCAGATAAAAAAAAACAC+AGG | - | chr8_3:12563170-12563189 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTTATCTGCTGCCA+GGG | + | chr8_3:12563173-12563192 | Msa1277340:intron | 30.0% |
| TTTCTCTGTGAATATGGATA+TGG | + | chr8_3:12563248-12563267 | Msa1277340:CDS | 30.0% | |
| ATAGCAACATCATGTAAAGA+GGG | - | chr8_3:12563401-12563420 | None:intergenic | 30.0% | |
| AATAGCAACATCATGTAAAG+AGG | - | chr8_3:12563402-12563421 | None:intergenic | 30.0% | |
| ! | TTACATGATGTTGCTATTCA+AGG | + | chr8_3:12563404-12563423 | Msa1277340:CDS | 30.0% |
| ACCAATTAGATAGTACAAGT+AGG | + | chr8_3:12563517-12563536 | Msa1277340:three_prime_UTR | 30.0% | |
| ACCTACTTGTACTATCTAAT+TGG | - | chr8_3:12563521-12563540 | None:intergenic | 30.0% | |
| CATGCTTCTGTATGTTTAAT+TGG | + | chr8_3:12563575-12563594 | Msa1277340:three_prime_UTR | 30.0% | |
| AAAGAAAAGACCAAGAAACC+AGG | + | chr8_3:12557832-12557851 | Msa1277340:five_prime_UTR | 35.0% | |
| AATTAGGAAACCTGGTTTCT+TGG | - | chr8_3:12557845-12557864 | None:intergenic | 35.0% | |
| AGAAACCAGGTTTCCTAATT+TGG | + | chr8_3:12557845-12557864 | Msa1277340:five_prime_UTR | 35.0% | |
| ! | ACCTTGCTTTGAATTCATTG+AGG | + | chr8_3:12557901-12557920 | Msa1277340:five_prime_UTR | 35.0% |
| TCCTCAATGAATTCAAAGCA+AGG | - | chr8_3:12557905-12557924 | None:intergenic | 35.0% | |
| TTGTTCATGGCCTCATTTAA+TGG | + | chr8_3:12558029-12558048 | Msa1277340:CDS | 35.0% | |
| ATAGATCCAACACATCTCAT+TGG | - | chr8_3:12558161-12558180 | None:intergenic | 35.0% | |
| CATTTCAATCAGGGACTAAT+TGG | + | chr8_3:12558488-12558507 | Msa1277340:intron | 35.0% | |
| ATTGGTCGCCGATATTAAAA+TGG | + | chr8_3:12558506-12558525 | Msa1277340:intron | 35.0% | |
| ! | ATTTTTGTCTCGGAGTGAAT+TGG | + | chr8_3:12558549-12558568 | Msa1277340:intron | 35.0% |
| ! | TTTTTGTCTCGGAGTGAATT+GGG | + | chr8_3:12558550-12558569 | Msa1277340:intron | 35.0% |
| ! | GGTTCATCACAATTTTCTGA+CGG | - | chr8_3:12558576-12558595 | None:intergenic | 35.0% |
| ! | TTAAGAGTGAAGACTCGTTT+TGG | - | chr8_3:12558597-12558616 | None:intergenic | 35.0% |
| !! | CCCGATGTCATATTGTTTTT+AGG | + | chr8_3:12559006-12559025 | Msa1277340:CDS | 35.0% |
| GAAACAACATAGATGGTAAG+AGG | + | chr8_3:12559202-12559221 | Msa1277340:intron | 35.0% | |
| ACAATAAGGTCAGAAGTGAA+TGG | + | chr8_3:12559466-12559485 | Msa1277340:intron | 35.0% | |
| TATAAAACATGCATAGCCAC+TGG | - | chr8_3:12559502-12559521 | None:intergenic | 35.0% | |
| CATGTTGTAGATACAACCAA+AGG | - | chr8_3:12559899-12559918 | None:intergenic | 35.0% | |
| !!! | TGATTTTTTGGATCGACAGA+TGG | + | chr8_3:12559952-12559971 | Msa1277340:intron | 35.0% |
| TAACCAATATCATGGTTTCC+GGG | - | chr8_3:12560059-12560078 | None:intergenic | 35.0% | |
| TCTTCATTATGCAATGCCAA+AGG | + | chr8_3:12560085-12560104 | Msa1277340:CDS | 35.0% | |
| TACATTCTTAGCCATGCATT+TGG | - | chr8_3:12560207-12560226 | None:intergenic | 35.0% | |
| TATTGATATCTGCAGATTGC+TGG | + | chr8_3:12560331-12560350 | Msa1277340:intron | 35.0% | |
| TCAATAGCACATCAATGTCA+AGG | - | chr8_3:12560390-12560409 | None:intergenic | 35.0% | |
| AGTTGTCAAAATCAATCAGC+AGG | - | chr8_3:12560521-12560540 | None:intergenic | 35.0% | |
| TCTGTAGTTTATAGAATGCG+AGG | + | chr8_3:12560675-12560694 | Msa1277340:intron | 35.0% | |
| ! | CAAACTCTTGATGGTAAACT+TGG | + | chr8_3:12560876-12560895 | Msa1277340:intron | 35.0% |
| CATGATAGCTCAAATCTACA+AGG | - | chr8_3:12560907-12560926 | None:intergenic | 35.0% | |
| ATGTGCGTTAATAAGACTCT+TGG | - | chr8_3:12561294-12561313 | None:intergenic | 35.0% | |
| TACTTCCCCAATTATCAATC+AGG | + | chr8_3:12561356-12561375 | Msa1277340:CDS | 35.0% | |
| ATGGCATAACAGTATTCTGA+GGG | - | chr8_3:12561447-12561466 | None:intergenic | 35.0% | |
| TCAGAATACTGTTATGCCAT+GGG | + | chr8_3:12561447-12561466 | Msa1277340:intron | 35.0% | |
| AAGAATTCAGACAAAACCCA+TGG | - | chr8_3:12561466-12561485 | None:intergenic | 35.0% | |
| AAGTTACTCATCTTATGGCA+TGG | + | chr8_3:12561594-12561613 | Msa1277340:intron | 35.0% | |
| TTTGCATGAGCTTTCATAAG+TGG | + | chr8_3:12561619-12561638 | Msa1277340:intron | 35.0% | |
| !!! | GTTGTCTTTTTTGTCCATTC+AGG | + | chr8_3:12561661-12561680 | Msa1277340:intron | 35.0% |
| TGCACAAAAGTCTAAAGAGA+TGG | - | chr8_3:12561756-12561775 | None:intergenic | 35.0% | |
| !!! | TGGCAGAAGCTTATTTTATC+TGG | + | chr8_3:12561889-12561908 | Msa1277340:intron | 35.0% |
| GGATTTAGATTGATGAGTGA+TGG | - | chr8_3:12561935-12561954 | None:intergenic | 35.0% | |
| TCACTCATCAATCTAAATCC+GGG | + | chr8_3:12561935-12561954 | Msa1277340:CDS | 35.0% | |
| TACGTTCTTACCTCCTTTAT+AGG | - | chr8_3:12561961-12561980 | None:intergenic | 35.0% | |
| !! | TATGATTTGCTGCAATTTGC+AGG | + | chr8_3:12562448-12562467 | Msa1277340:intron | 35.0% |
| !! | CAGAAACTTGTGTTACTTGT+TGG | - | chr8_3:12562519-12562538 | None:intergenic | 35.0% |
| CAACAAGTAACACAAGTTTC+TGG | + | chr8_3:12562517-12562536 | Msa1277340:CDS | 35.0% | |
| TGAAACAAAAGAGAAGGATG+AGG | + | chr8_3:12562602-12562621 | Msa1277340:CDS | 35.0% | |
| TTTACAGTGGATGACTTCAA+GGG | - | chr8_3:12562690-12562709 | None:intergenic | 35.0% | |
| ATTTACAGTGGATGACTTCA+AGG | - | chr8_3:12562691-12562710 | None:intergenic | 35.0% | |
| CTTAGGAGAAAGGTAAACTT+TGG | + | chr8_3:12562725-12562744 | Msa1277340:intron | 35.0% | |
| ACTAACATCATGAACTTGTC+TGG | + | chr8_3:12562843-12562862 | Msa1277340:intron | 35.0% | |
| !! | GCTATTTTCGTAAGCCATTA+TGG | - | chr8_3:12562992-12563011 | None:intergenic | 35.0% |
| ! | AACAGATTTGGTAGCTGTTT+GGG | - | chr8_3:12563118-12563137 | None:intergenic | 35.0% |
| ! | TAACAGATTTGGTAGCTGTT+TGG | - | chr8_3:12563119-12563138 | None:intergenic | 35.0% |
| !!! | GTTTTTTTTTATCTGCTGCC+AGG | + | chr8_3:12563172-12563191 | Msa1277340:intron | 35.0% |
| !!! | TTTTTTTTATCTGCTGCCAG+GGG | + | chr8_3:12563174-12563193 | Msa1277340:intron | 35.0% |
| !!! | CCAGTATTTTTTCTAGCAGT+TGG | - | chr8_3:12563216-12563235 | None:intergenic | 35.0% |
| CCAACTGCTAGAAAAAATAC+TGG | + | chr8_3:12563213-12563232 | Msa1277340:CDS | 35.0% | |
| AGCAGATTTCTCTGTGAATA+TGG | + | chr8_3:12563242-12563261 | Msa1277340:CDS | 35.0% | |
| !!! | GTTTTTGATTTGCCTGTTCT+GGG | - | chr8_3:12563312-12563331 | None:intergenic | 35.0% |
| !!! | TGTTTTTGATTTGCCTGTTC+TGG | - | chr8_3:12563313-12563332 | None:intergenic | 35.0% |
| ! | TGATGTTGCTATTCAAGGAT+TGG | + | chr8_3:12563409-12563428 | Msa1277340:CDS | 35.0% |
| CTCTTCCAAATTAGGAAACC+TGG | - | chr8_3:12557853-12557872 | None:intergenic | 40.0% | |
| CATGAACAAGTAAAGAGAGG+TGG | - | chr8_3:12558018-12558037 | None:intergenic | 40.0% | |
| CACCTCTCTTTACTTGTTCA+TGG | + | chr8_3:12558016-12558035 | Msa1277340:CDS | 40.0% | |
| TGCTATTATTGCAGATCCAC+AGG | + | chr8_3:12558346-12558365 | Msa1277340:CDS | 40.0% | |
| ! | CAAGAGATTTCTCTGGAAGA+TGG | - | chr8_3:12558912-12558931 | None:intergenic | 40.0% |
| AATATGACATCGGGCTTGAA+AGG | - | chr8_3:12559000-12559019 | None:intergenic | 40.0% | |
| TTAGGTGATTACTTCGATGG+AGG | + | chr8_3:12559024-12559043 | Msa1277340:CDS | 40.0% | |
| TAAGGTCAGAAGTGAATGGA+TGG | + | chr8_3:12559470-12559489 | Msa1277340:intron | 40.0% | |
| GAATGGATGGATATTTCCAG+TGG | + | chr8_3:12559483-12559502 | Msa1277340:intron | 40.0% | |
| ATTCAGGGAGGGGAAAAAAA+GGG | - | chr8_3:12559724-12559743 | None:intergenic | 40.0% | |
| ! | TTTTTGGATCGACAGATGGA+AGG | + | chr8_3:12559956-12559975 | Msa1277340:intron | 40.0% |
| AAGCCAGTTTACTACATTCC+CGG | + | chr8_3:12560038-12560057 | Msa1277340:CDS | 40.0% | |
| TTTCCGGGAATGTAGTAAAC+TGG | - | chr8_3:12560044-12560063 | None:intergenic | 40.0% | |
| ATTCCCGGAAACCATGATAT+TGG | + | chr8_3:12560053-12560072 | Msa1277340:CDS | 40.0% | |
| GGAATGAAATGCCAAATGCA+TGG | + | chr8_3:12560193-12560212 | Msa1277340:intron | 40.0% | |
| TATACTCAAGATCTCAGGGA+AGG | + | chr8_3:12560257-12560276 | Msa1277340:intron | 40.0% | |
| ATACTCAAGATCTCAGGGAA+GGG | + | chr8_3:12560258-12560277 | Msa1277340:intron | 40.0% | |
| TCACAACCAACACAAGATGA+TGG | - | chr8_3:12560472-12560491 | None:intergenic | 40.0% | |
| ATGAGAAAAGACGACACCAA+AGG | - | chr8_3:12560740-12560759 | None:intergenic | 40.0% | |
| TCATTGCATTGCATCCACAT+AGG | + | chr8_3:12560770-12560789 | Msa1277340:intron | 40.0% | |
| ! | GTCGATTCACAAACTCTTGA+TGG | + | chr8_3:12560867-12560886 | Msa1277340:CDS | 40.0% |
| AGCATCTGACTTCTCAAACT+TGG | + | chr8_3:12561144-12561163 | Msa1277340:CDS | 40.0% | |
| GCATCTGACTTCTCAAACTT+GGG | + | chr8_3:12561145-12561164 | Msa1277340:CDS | 40.0% | |
| GCACATTCCTTTATATCGAC+CGG | + | chr8_3:12561308-12561327 | Msa1277340:CDS | 40.0% | |
| GTATCATCCGGTCGATATAA+AGG | - | chr8_3:12561318-12561337 | None:intergenic | 40.0% | |
| ! | TAATTGGGGAAGTACGATCA+GGG | - | chr8_3:12561350-12561369 | None:intergenic | 40.0% |
| ! | ATAATTGGGGAAGTACGATC+AGG | - | chr8_3:12561351-12561370 | None:intergenic | 40.0% |
| CATGGCATAACAGTATTCTG+AGG | - | chr8_3:12561448-12561467 | None:intergenic | 40.0% | |
| CTCAGAATACTGTTATGCCA+TGG | + | chr8_3:12561446-12561465 | Msa1277340:intron | 40.0% | |
| TTTCAAGAACAGCAACTAGC+AGG | - | chr8_3:12561500-12561519 | None:intergenic | 40.0% | |
| TTTAGAGGATACATCACGCT+TGG | + | chr8_3:12561546-12561565 | Msa1277340:intron | 40.0% | |
| ! | TGGTGCATTGATCATGATCA+TGG | - | chr8_3:12561915-12561934 | None:intergenic | 40.0% |
| ATCTAAATCCGGGCCTATAA+AGG | + | chr8_3:12561945-12561964 | Msa1277340:CDS | 40.0% | |
| ACACTCTAGGTACTATAAGC+TGG | + | chr8_3:12562042-12562061 | Msa1277340:CDS | 40.0% | |
| ACTGATAGCAGCATGAAAGA+AGG | - | chr8_3:12562086-12562105 | None:intergenic | 40.0% | |
| !! | TCTTCTGGAATGGAAGCATT+TGG | - | chr8_3:12562125-12562144 | None:intergenic | 40.0% |
| AGGACCTACATGGAAATATC+AGG | + | chr8_3:12562359-12562378 | Msa1277340:intron | 40.0% | |
| AGCTCCTGATATTTCCATGT+AGG | - | chr8_3:12562366-12562385 | None:intergenic | 40.0% | |
| AAATATCAGGAGCTCTCACT+GGG | + | chr8_3:12562372-12562391 | Msa1277340:intron | 40.0% | |
| ! | CATCAGTGTTGGAATTTGGT+GGG | + | chr8_3:12562540-12562559 | Msa1277340:CDS | 40.0% |
| ATGAAAGAGGCTTAGGAGAA+AGG | + | chr8_3:12562715-12562734 | Msa1277340:CDS | 40.0% | |
| CCATGTACTCTGTAATAGCA+CGG | - | chr8_3:12562761-12562780 | None:intergenic | 40.0% | |
| CATCATGAACTTGTCTGGAT+TGG | + | chr8_3:12562848-12562867 | Msa1277340:intron | 40.0% | |
| ! | ATTAGAGCTTGTGACTTGTG+AGG | + | chr8_3:12562894-12562913 | Msa1277340:intron | 40.0% |
| ATGGATATGGCTTCAACCAT+CGG | + | chr8_3:12563261-12563280 | Msa1277340:CDS | 40.0% | |
| GAAGTGTGCGTAGTAATCTT+TGG | - | chr8_3:12563347-12563366 | None:intergenic | 40.0% | |
| ! | ACATACAGAAGCATGAACAG+TGG | - | chr8_3:12563570-12563589 | None:intergenic | 40.0% |
| GGCCATGAACAAGTAAAGAG+AGG | - | chr8_3:12558021-12558040 | None:intergenic | 45.0% | |
| TAGCTGCCAATGAGATGTGT+TGG | + | chr8_3:12558152-12558171 | Msa1277340:intron | 45.0% | |
| CCTGCTGCTAGCAGAAAATA+AGG | - | chr8_3:12558283-12558302 | None:intergenic | 45.0% | |
| !!! | CCTTATTTTCTGCTAGCAGC+AGG | + | chr8_3:12558280-12558299 | Msa1277340:intron | 45.0% |
| AAAGCAGAAAAGCTCACCTG+TGG | - | chr8_3:12558365-12558384 | None:intergenic | 45.0% | |
| TCCAGAGAAATCTCTTGCAC+TGG | + | chr8_3:12558915-12558934 | Msa1277340:CDS | 45.0% | |
| TCCAGTGCAAGAGATTTCTC+TGG | - | chr8_3:12558919-12558938 | None:intergenic | 45.0% | |
| AGAGCTCGCAGAGTTTATGT+TGG | - | chr8_3:12559406-12559425 | None:intergenic | 45.0% | |
| GATTCAGGGAGGGGAAAAAA+AGG | - | chr8_3:12559725-12559744 | None:intergenic | 45.0% | |
| TGAAATGAGGGATTCAGGGA+GGG | - | chr8_3:12559735-12559754 | None:intergenic | 45.0% | |
| TTGAAATGAGGGATTCAGGG+AGG | - | chr8_3:12559736-12559755 | None:intergenic | 45.0% | |
| AGTTGCCAAAAGGTTGCTTC+CGG | + | chr8_3:12560144-12560163 | Msa1277340:intron | 45.0% | |
| ATCTGCAGATTGCTGGTGTA+TGG | + | chr8_3:12560338-12560357 | Msa1277340:intron | 45.0% | |
| TCTGCAGATTGCTGGTGTAT+GGG | + | chr8_3:12560339-12560358 | Msa1277340:intron | 45.0% | |
| GAAAGGCCATCATCTTGTGT+TGG | + | chr8_3:12560463-12560482 | Msa1277340:intron | 45.0% | |
| GTAGCGTCTGATAACCTATG+TGG | - | chr8_3:12560787-12560806 | None:intergenic | 45.0% | |
| ATAGGTTATCAGACGCTACG+AGG | + | chr8_3:12560788-12560807 | Msa1277340:intron | 45.0% | |
| AGACGCTACGAGGAAACATT+TGG | + | chr8_3:12560798-12560817 | Msa1277340:CDS | 45.0% | |
| GACGCTACGAGGAAACATTT+GGG | + | chr8_3:12560799-12560818 | Msa1277340:CDS | 45.0% | |
| GAGAAGTCAGATGCTTCTGT+GGG | - | chr8_3:12561139-12561158 | None:intergenic | 45.0% | |
| TGAGAAGTCAGATGCTTCTG+TGG | - | chr8_3:12561140-12561159 | None:intergenic | 45.0% | |
| AGAGATGGTAGATGACTCAC+AGG | - | chr8_3:12561741-12561760 | None:intergenic | 45.0% | |
| ! | CTTTTGTGCATCACTGTCGA+CGG | + | chr8_3:12561766-12561785 | Msa1277340:intron | 45.0% |
| TAAATCCGGGCCTATAAAGG+AGG | + | chr8_3:12561948-12561967 | Msa1277340:CDS | 45.0% | |
| TCTTACCTCCTTTATAGGCC+CGG | - | chr8_3:12561956-12561975 | None:intergenic | 45.0% | |
| GGTACTATAAGCTGGCAACA+AGG | + | chr8_3:12562050-12562069 | Msa1277340:CDS | 45.0% | |
| ! | CAACAAAGGCTCTTCTGGAA+TGG | - | chr8_3:12562135-12562154 | None:intergenic | 45.0% |
| TGTGTCAACAAAGGCTCTTC+TGG | - | chr8_3:12562140-12562159 | None:intergenic | 45.0% | |
| GGTTACAATGAGGACCTACA+TGG | + | chr8_3:12562349-12562368 | Msa1277340:intron | 45.0% | |
| GAAATATCAGGAGCTCTCAC+TGG | + | chr8_3:12562371-12562390 | Msa1277340:intron | 45.0% | |
| ! | ACTTGTTGGCCAGAGTAAGA+GGG | - | chr8_3:12562505-12562524 | None:intergenic | 45.0% |
| ! | TACTTGTTGGCCAGAGTAAG+AGG | - | chr8_3:12562506-12562525 | None:intergenic | 45.0% |
| !! | CAAGTTTCTGGCATCAGTGT+TGG | + | chr8_3:12562529-12562548 | Msa1277340:CDS | 45.0% |
| ! | CTGGCATCAGTGTTGGAATT+TGG | + | chr8_3:12562536-12562555 | Msa1277340:CDS | 45.0% |
| ! | GCATCAGTGTTGGAATTTGG+TGG | + | chr8_3:12562539-12562558 | Msa1277340:CDS | 45.0% |
| ! | TTGTGACTTGTGAGGCTGTA+TGG | + | chr8_3:12562902-12562921 | Msa1277340:intron | 45.0% |
| ! | TGTGACTTGTGAGGCTGTAT+GGG | + | chr8_3:12562903-12562922 | Msa1277340:intron | 45.0% |
| CCAGGGGTAATGTTGTATTG+CGG | + | chr8_3:12563190-12563209 | Msa1277340:intron | 45.0% | |
| TGGATATGGCTTCAACCATC+GGG | + | chr8_3:12563262-12563281 | Msa1277340:CDS | 45.0% | |
| !!! | CTGGGAGGTATTTTTGCTAG+AGG | - | chr8_3:12563294-12563313 | None:intergenic | 45.0% |
| GCAAAAATACCTCCCAGAAC+AGG | + | chr8_3:12563297-12563316 | Msa1277340:CDS | 45.0% | |
| !! | TTTGATTTGCCTGTTCTGGG+AGG | - | chr8_3:12563309-12563328 | None:intergenic | 45.0% |
| TGGGCACTTACCCTTCTCTA+TGG | + | chr8_3:12557970-12557989 | Msa1277340:CDS | 50.0% | |
| GAAATGAGGGATTCAGGGAG+GGG | - | chr8_3:12559734-12559753 | None:intergenic | 50.0% | |
| ! | TACCACCGGAAGCAACCTTT+TGG | - | chr8_3:12560152-12560171 | None:intergenic | 50.0% |
| CGACCGGATGATACTTACTG+TGG | + | chr8_3:12561324-12561343 | Msa1277340:CDS | 50.0% | |
| GGGCCACAGTAAGTATCATC+CGG | - | chr8_3:12561330-12561349 | None:intergenic | 50.0% | |
| GAGATGATGTGGGATGCAGA+AGG | + | chr8_3:12562642-12562661 | Msa1277340:CDS | 50.0% | |
| ! | AGGCTGTATGGGAGAGCATA+TGG | + | chr8_3:12562914-12562933 | Msa1277340:intron | 50.0% |
| CCGCAATACAACATTACCCC+TGG | - | chr8_3:12563193-12563212 | None:intergenic | 50.0% | |
| TGACATCGGGCTTGAAAGGC+AGG | - | chr8_3:12558996-12559015 | None:intergenic | 55.0% | |
| TGCCAAAAGGTTGCTTCCGG+TGG | + | chr8_3:12560147-12560166 | Msa1277340:intron | 55.0% | |
| AGTAGCGTGCAGCACACTCT+AGG | + | chr8_3:12562029-12562048 | Msa1277340:intron | 55.0% | |
| CCAGAGTAAGAGGGCTAGGA+GGG | - | chr8_3:12562496-12562515 | None:intergenic | 55.0% | |
| TTGGCCAGAGTAAGAGGGCT+AGG | - | chr8_3:12562500-12562519 | None:intergenic | 55.0% | |
| TGCTAGAGGATCAAGCCCGA+TGG | - | chr8_3:12563280-12563299 | None:intergenic | 55.0% | |
| CCCTCCTAGCCCTCTTACTC+TGG | + | chr8_3:12562493-12562512 | Msa1277340:CDS | 60.0% | |
| GCCAGAGTAAGAGGGCTAGG+AGG | - | chr8_3:12562497-12562516 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 12557781 | 12563627 | 12557781 | ID=Msa1277340;Name=Msa1277340 |
| chr8_3 | mRNA | 12557781 | 12563627 | 12557781 | ID=Msa1277340-mRNA-1;Parent=Msa1277340;Name=Msa1277340-mRNA-1;_AED=0.07;_eAED=0.07;_QI=150|1|1|1|1|1|13|184|536 |
| chr8_3 | exon | 12557781 | 12558050 | 12557781 | ID=Msa1277340-mRNA-1:exon:5075;Parent=Msa1277340-mRNA-1 |
| chr8_3 | exon | 12558299 | 12558367 | 12558299 | ID=Msa1277340-mRNA-1:exon:5076;Parent=Msa1277340-mRNA-1 |
| chr8_3 | exon | 12558889 | 12559067 | 12558889 | ID=Msa1277340-mRNA-1:exon:5077;Parent=Msa1277340-mRNA-1 |
| chr8_3 | exon | 12559971 | 12560106 | 12559971 | ID=Msa1277340-mRNA-1:exon:5078;Parent=Msa1277340-mRNA-1 |
| chr8_3 | exon | 12560792 | 12560888 | 12560792 | ID=Msa1277340-mRNA-1:exon:5079;Parent=Msa1277340-mRNA-1 |
| chr8_3 | exon | 12561132 | 12561191 | 12561132 | ID=Msa1277340-mRNA-1:exon:5080;Parent=Msa1277340-mRNA-1 |
| chr8_3 | exon | 12561277 | 12561377 | 12561277 | ID=Msa1277340-mRNA-1:exon:5081;Parent=Msa1277340-mRNA-1 |
| chr8_3 | exon | 12561551 | 12561591 | 12561551 | ID=Msa1277340-mRNA-1:exon:5082;Parent=Msa1277340-mRNA-1 |
| chr8_3 | exon | 12561683 | 12561740 | 12561683 | ID=Msa1277340-mRNA-1:exon:5083;Parent=Msa1277340-mRNA-1 |
| chr8_3 | exon | 12561895 | 12561969 | 12561895 | ID=Msa1277340-mRNA-1:exon:5084;Parent=Msa1277340-mRNA-1 |
| chr8_3 | exon | 12562041 | 12562198 | 12562041 | ID=Msa1277340-mRNA-1:exon:5085;Parent=Msa1277340-mRNA-1 |
| chr8_3 | exon | 12562470 | 12562736 | 12562470 | ID=Msa1277340-mRNA-1:exon:5086;Parent=Msa1277340-mRNA-1 |
| chr8_3 | exon | 12563194 | 12563627 | 12563194 | ID=Msa1277340-mRNA-1:exon:5087;Parent=Msa1277340-mRNA-1 |
| chr8_3 | five_prime_UTR | 12557781 | 12557930 | 12557781 | ID=Msa1277340-mRNA-1:five_prime_utr;Parent=Msa1277340-mRNA-1 |
| chr8_3 | CDS | 12557931 | 12558050 | 12557931 | ID=Msa1277340-mRNA-1:cds;Parent=Msa1277340-mRNA-1 |
| chr8_3 | CDS | 12558299 | 12558367 | 12558299 | ID=Msa1277340-mRNA-1:cds;Parent=Msa1277340-mRNA-1 |
| chr8_3 | CDS | 12558889 | 12559067 | 12558889 | ID=Msa1277340-mRNA-1:cds;Parent=Msa1277340-mRNA-1 |
| chr8_3 | CDS | 12559971 | 12560106 | 12559971 | ID=Msa1277340-mRNA-1:cds;Parent=Msa1277340-mRNA-1 |
| chr8_3 | CDS | 12560792 | 12560888 | 12560792 | ID=Msa1277340-mRNA-1:cds;Parent=Msa1277340-mRNA-1 |
| chr8_3 | CDS | 12561132 | 12561191 | 12561132 | ID=Msa1277340-mRNA-1:cds;Parent=Msa1277340-mRNA-1 |
| chr8_3 | CDS | 12561277 | 12561377 | 12561277 | ID=Msa1277340-mRNA-1:cds;Parent=Msa1277340-mRNA-1 |
| chr8_3 | CDS | 12561551 | 12561591 | 12561551 | ID=Msa1277340-mRNA-1:cds;Parent=Msa1277340-mRNA-1 |
| chr8_3 | CDS | 12561683 | 12561740 | 12561683 | ID=Msa1277340-mRNA-1:cds;Parent=Msa1277340-mRNA-1 |
| chr8_3 | CDS | 12561895 | 12561969 | 12561895 | ID=Msa1277340-mRNA-1:cds;Parent=Msa1277340-mRNA-1 |
| chr8_3 | CDS | 12562041 | 12562198 | 12562041 | ID=Msa1277340-mRNA-1:cds;Parent=Msa1277340-mRNA-1 |
| chr8_3 | CDS | 12562470 | 12562736 | 12562470 | ID=Msa1277340-mRNA-1:cds;Parent=Msa1277340-mRNA-1 |
| chr8_3 | CDS | 12563194 | 12563443 | 12563194 | ID=Msa1277340-mRNA-1:cds;Parent=Msa1277340-mRNA-1 |
| chr8_3 | three_prime_UTR | 12563444 | 12563627 | 12563444 | ID=Msa1277340-mRNA-1:three_prime_utr;Parent=Msa1277340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
