AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0243690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0243690 MtrunA17_Chr2g0296941 91.667 180 15 0 18 197 18 197 1.41e-114 337
Msa0243690 MtrunA17_Chr1g0187131 34.351 131 83 2 56 185 67 195 2.94e-15 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0243690 AT4G20070.2 65.241 187 60 2 38 219 84 270 2.37e-78 243
Msa0243690 AT4G20070.1 65.241 187 60 2 38 219 84 270 2.05e-77 243
Msa0243690 AT5G43600.1 35.115 131 82 2 56 185 72 200 2.73e-16 78.2

Find 46 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAAATGCAGAAGCTTTAT+TGG 0.176766 2_2:-20976571 Msa0243690:CDS
CGATAAATCTTATTCGAAAA+TGG 0.276645 2_2:-20976736 Msa0243690:CDS
TTTCCTTGATACCTCTTATC+AGG 0.279914 2_2:+20975893 None:intergenic
AGATTTCAAACTACTTTCTT+AGG 0.292944 2_2:-20975962 Msa0243690:CDS
GAGCTGGCGTTTGTTGATTC+AGG 0.310318 2_2:+20977986 None:intergenic
GTTGATGCTGGTAAATTTGA+TGG 0.363766 2_2:-20976395 Msa0243690:CDS
TTTCAGTTGGGTGGACCAAA+TGG 0.392422 2_2:-20976625 Msa0243690:intron
CTTGACACACTGACCTCAAC+AGG 0.409836 2_2:+20976296 None:intergenic
GACCATGTACATTTCCCATT+TGG 0.413557 2_2:+20976610 None:intergenic
TTATTGTTAACCAAGCTGTT+AGG 0.417071 2_2:-20975321 Msa0243690:CDS
TTAGGCAGTGGTGCTATAGC+TGG 0.429341 2_2:-20975944 Msa0243690:CDS
ATGGAAAGCTGCAAAATCTA+AGG 0.459235 2_2:-20976322 Msa0243690:CDS
GTGGCAAGGCTTGTTGAGCT+TGG 0.460871 2_2:-20977112 Msa0243690:CDS
AAATGGTTAGGAATTGAAAC+TGG 0.465677 2_2:-20977187 Msa0243690:intron
AATGCAGAAGCTTTATTGGT+TGG 0.467018 2_2:-20976567 Msa0243690:CDS
CTCTCTGTGTCCTAACAGCT+TGG 0.477447 2_2:+20975311 None:intergenic
CAAACTACTTTCTTAGGCAG+TGG 0.493661 2_2:-20975956 Msa0243690:CDS
CATTGGAGATACCTGATAAG+AGG 0.498225 2_2:-20975904 Msa0243690:intron
AAACATCAAACAAGCTGAGC+TGG 0.500801 2_2:+20977970 None:intergenic
TTCAGTTGGGTGGACCAAAT+GGG 0.503176 2_2:-20976624 Msa0243690:intron
TTGAAAGTTATGCATGTCAA+TGG 0.509865 2_2:-20976341 Msa0243690:CDS
AATGTACATGGTCGAGTTGA+GGG 0.516730 2_2:-20976600 Msa0243690:CDS
GGTATCTCCAATGTTGTAGC+AGG 0.519067 2_2:+20975914 None:intergenic
GGTAAATTTGATGGAGCACT+AGG 0.522882 2_2:-20976386 Msa0243690:CDS
ATTTCGATGCAACAGAAACC+TGG 0.523035 2_2:-20978021 Msa0243690:CDS
TAGGACACTGTTGTTGATGC+TGG 0.528217 2_2:-20976407 Msa0243690:CDS
AAATCTTATTCGAAAATGGA+TGG 0.534286 2_2:-20976732 Msa0243690:CDS
CGAAAATGGATGGAAGATGC+TGG 0.534327 2_2:-20976722 Msa0243690:CDS
GCAACAGAAACCTGGAAAAG+AGG 0.537275 2_2:-20978013 Msa0243690:CDS
AAATATTTGAATGAGAACCT+TGG 0.543224 2_2:-20975445 Msa0243690:CDS
AAATCTAAGGCGTCCTGTTG+AGG 0.552501 2_2:-20976309 Msa0243690:intron
GACCAAATGGGAAATGTACA+TGG 0.563951 2_2:-20976612 Msa0243690:CDS
GCCTCATCTCTTAGAATCTG+CGG 0.585167 2_2:+20977136 None:intergenic
TTTATTGGTTGGATCTCACA+TGG 0.610664 2_2:-20976556 Msa0243690:intron
TCCGCAGATTCTAAGAGATG+AGG 0.611127 2_2:-20977137 Msa0243690:CDS
AAGGCTTGTTGAGCTTGGAA+AGG 0.612966 2_2:-20977107 Msa0243690:intron
CAGTAGTTTGTCTAACTCAA+CGG 0.613340 2_2:-20975374 Msa0243690:CDS
AAATGTACATGGTCGAGTTG+AGG 0.615458 2_2:-20976601 Msa0243690:CDS
AATAAGATTTATCGCCCTCG+TGG 0.616684 2_2:+20976745 None:intergenic
GATTCTAAGAGATGAGGCAG+TGG 0.632621 2_2:-20977131 Msa0243690:CDS
ATGCTAGTGGCTATCTAGAG+AGG 0.636846 2_2:-20976787 Msa0243690:CDS
TAAGAGATGAGGCAGTGGCA+AGG 0.651166 2_2:-20977126 Msa0243690:CDS
AGCTGTTAGGACACAGAGAG+AGG 0.658652 2_2:-20975308 Msa0243690:CDS
GAACAGGTTAGCGATGCTAG+TGG 0.671726 2_2:-20976800 Msa0243690:intron
TTTGAGTCATGCATCCACGA+GGG 0.675190 2_2:-20976759 Msa0243690:CDS
TCTCCTCATTAGTAAAACCA+AGG 0.689816 2_2:+20975428 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTTATAAAAAAAAAAAAAG+TGG - chr2_2:20975590-20975609 Msa0243690:intron 10.0%
!! TAAGAAAATTGTATGTATGT+TGG - chr2_2:20976101-20976120 Msa0243690:intron 20.0%
!! AACTACAGTATAAATATTGA+TGG + chr2_2:20976367-20976386 None:intergenic 20.0%
!! TACATTATCGATAATTTGAA+AGG - chr2_2:20976453-20976472 Msa0243690:intron 20.0%
!!! ATCAAAATTTTGCAATTTCA+GGG + chr2_2:20976481-20976500 None:intergenic 20.0%
!!! GAGAAATTATTTAGAGTTAA+AGG + chr2_2:20976737-20976756 None:intergenic 20.0%
!! TTATGACTGAAATTCAAAAA+AGG + chr2_2:20977946-20977965 None:intergenic 20.0%
!! AATGTTAAGATACCCTTTTA+AGG - chr2_2:20975307-20975326 Msa0243690:CDS 25.0%
!! TTTTGCTAACATCATAGAAA+AGG + chr2_2:20975342-20975361 None:intergenic 25.0%
! ATGTTTGAGAACAAATGAAA+AGG - chr2_2:20975456-20975475 Msa0243690:intron 25.0%
! TGTTTGAGAACAAATGAAAA+GGG - chr2_2:20975457-20975476 Msa0243690:intron 25.0%
!! AGTTACTAGTTTCTGAAAAT+TGG - chr2_2:20976055-20976074 Msa0243690:intron 25.0%
!!! TATGTTGGCTTAATTTAACT+TGG - chr2_2:20976116-20976135 Msa0243690:intron 25.0%
!!! CTTAATTTAACTTGGAAGTA+GGG - chr2_2:20976124-20976143 Msa0243690:intron 25.0%
!!! TTAATTTAACTTGGAAGTAG+GGG - chr2_2:20976125-20976144 Msa0243690:intron 25.0%
! AAACTGGAGATTTAGAAAAA+CGG - chr2_2:20976238-20976257 Msa0243690:intron 25.0%
! CATTGAGTAAATATCCAAAT+TGG - chr2_2:20976394-20976413 Msa0243690:CDS 25.0%
!! GATCAAAATTTTGCAATTTC+AGG + chr2_2:20976482-20976501 None:intergenic 25.0%
!! ATTTGTTACATTGTTCTTAG+TGG - chr2_2:20976568-20976587 Msa0243690:CDS 25.0%
! CGATAAATCTTATTCGAAAA+TGG - chr2_2:20976673-20976692 Msa0243690:intron 25.0%
! AAATCTTATTCGAAAATGGA+TGG - chr2_2:20976677-20976696 Msa0243690:intron 25.0%
!!! ATGAGTATGTTATTTTCAGT+TGG - chr2_2:20976771-20976790 Msa0243690:CDS 25.0%
!!! TGAGTATGTTATTTTCAGTT+GGG - chr2_2:20976772-20976791 Msa0243690:CDS 25.0%
!!! AATGATGCCACTTTTTTTAT+TGG - chr2_2:20977361-20977380 Msa0243690:intron 25.0%
! AGATTTCAAACTACTTTCTT+AGG - chr2_2:20977447-20977466 Msa0243690:intron 25.0%
! AATCATAGAATATGAGACAT+GGG + chr2_2:20977774-20977793 None:intergenic 25.0%
! ATATGTGATGTTTGTAACAA+AGG + chr2_2:20977905-20977924 None:intergenic 25.0%
! AAATATTTGAATGAGAACCT+TGG - chr2_2:20977964-20977983 Msa0243690:intron 25.0%
AGGAATCTGAATCCTTAAAA+GGG + chr2_2:20975322-20975341 None:intergenic 30.0%
AAGGAATCTGAATCCTTAAA+AGG + chr2_2:20975323-20975342 None:intergenic 30.0%
ATATAATCACATGTGTCATC+TGG + chr2_2:20975754-20975773 None:intergenic 30.0%
TGTTGAATATTAGTTCGACT+TGG - chr2_2:20975871-20975890 Msa0243690:intron 30.0%
ACCTTGGTTCAAATTGTATT+TGG - chr2_2:20975997-20976016 Msa0243690:intron 30.0%
TCCAAATACAATTTGAACCA+AGG + chr2_2:20976001-20976020 None:intergenic 30.0%
! GTTTCTGAAAATTGGTATAC+AGG - chr2_2:20976063-20976082 Msa0243690:intron 30.0%
! AAATTGGTATACAGGTTTTG+TGG - chr2_2:20976071-20976090 Msa0243690:intron 30.0%
!! GCTTAATTTAACTTGGAAGT+AGG - chr2_2:20976123-20976142 Msa0243690:intron 30.0%
! TTCAATTCCTAACCATTTTC+AGG + chr2_2:20976220-20976239 None:intergenic 30.0%
AAATGGTTAGGAATTGAAAC+TGG - chr2_2:20976222-20976241 Msa0243690:intron 30.0%
AACTGGAGATTTAGAAAAAC+GGG - chr2_2:20976239-20976258 Msa0243690:intron 30.0%
AAAGATGAGTTCTTGAAGTT+AGG + chr2_2:20976330-20976349 None:intergenic 30.0%
TACAATTTCAAGGACCAATT+TGG + chr2_2:20976411-20976430 None:intergenic 30.0%
GATACAGTCTTACAATTTCA+AGG + chr2_2:20976421-20976440 None:intergenic 30.0%
TTGTTCTTAGTGGTTAATGT+TGG - chr2_2:20976578-20976597 Msa0243690:CDS 30.0%
TTAGAGTTAAAGGAGTTAGA+AGG + chr2_2:20976727-20976746 None:intergenic 30.0%
GTTTCATTCAATGTTAGTTG+AGG + chr2_2:20976898-20976917 None:intergenic 30.0%
AACCATTTCTTGACAGTTAA+TGG - chr2_2:20976920-20976939 Msa0243690:intron 30.0%
TACCATTAACTGTCAAGAAA+TGG + chr2_2:20976925-20976944 None:intergenic 30.0%
!! ACTTTGATGGGTACTTATTT+TGG - chr2_2:20976978-20976997 Msa0243690:intron 30.0%
TTGAAAGTTATGCATGTCAA+TGG - chr2_2:20977068-20977087 Msa0243690:intron 30.0%
TAATGATATAGTCTGATGCA+CGG - chr2_2:20977165-20977184 Msa0243690:CDS 30.0%
CTCTTGTATGTGTATTCATT+TGG - chr2_2:20977258-20977277 Msa0243690:intron 30.0%
ATGATTCATTGAAAGGAATC+GGG + chr2_2:20977324-20977343 None:intergenic 30.0%
GATGATTCATTGAAAGGAAT+CGG + chr2_2:20977325-20977344 None:intergenic 30.0%
CAAGATGATGATTCATTGAA+AGG + chr2_2:20977331-20977350 None:intergenic 30.0%
CTTTCAATGAATCATCATCT+TGG - chr2_2:20977329-20977348 Msa0243690:intron 30.0%
GATGACACCAATAAAAAAAG+TGG + chr2_2:20977371-20977390 None:intergenic 30.0%
! ATTGCATTTTGTGATGAAGA+GGG - chr2_2:20977420-20977439 Msa0243690:intron 30.0%
! TATTTTACCTGCTACAACAT+TGG - chr2_2:20977488-20977507 Msa0243690:intron 30.0%
!!! AGAGGTATCAAGGAAATTTT+TGG - chr2_2:20977523-20977542 Msa0243690:intron 30.0%
!! TGAGTTTGCTATCAAATGTA+GGG + chr2_2:20977751-20977770 None:intergenic 30.0%
CAATCATAGAATATGAGACA+TGG + chr2_2:20977775-20977794 None:intergenic 30.0%
ATGATTGAATCTGCTACTAT+TGG - chr2_2:20977788-20977807 Msa0243690:intron 30.0%
TTATTGTTAACCAAGCTGTT+AGG - chr2_2:20978088-20978107 Msa0243690:intron 30.0%
AGTCAAAGCAAGAACAACAA+TGG + chr2_2:20975513-20975532 None:intergenic 35.0%
! TCTTGCTTTGACTCTTTTTC+TGG - chr2_2:20975520-20975539 Msa0243690:intron 35.0%
!!! GTTGTGATGTGTGTTTTTTG+TGG - chr2_2:20975656-20975675 Msa0243690:intron 35.0%
!! TTGTTAGCTCTGTAGCATTA+AGG - chr2_2:20975693-20975712 Msa0243690:intron 35.0%
ACTTGGATGTCTTCAAATCA+TGG - chr2_2:20975888-20975907 Msa0243690:intron 35.0%
GCTAAATGCTTACCTGAAAA+TGG - chr2_2:20976205-20976224 Msa0243690:intron 35.0%
ATGCTTACCTGAAAATGGTT+AGG - chr2_2:20976210-20976229 Msa0243690:intron 35.0%
ACTGGAGATTTAGAAAAACG+GGG - chr2_2:20976240-20976259 Msa0243690:intron 35.0%
! CCAGCAACATTCACATTTTA+TGG + chr2_2:20976546-20976565 None:intergenic 35.0%
CCATAAAATGTGAATGTTGC+TGG - chr2_2:20976543-20976562 Msa0243690:intron 35.0%
TTAGTGGTTAATGTTGGTGT+TGG - chr2_2:20976584-20976603 Msa0243690:CDS 35.0%
!!! GTATGTTATTTTCAGTTGGG+TGG - chr2_2:20976775-20976794 Msa0243690:CDS 35.0%
! TGCAAATGCAGAAGCTTTAT+TGG - chr2_2:20976838-20976857 Msa0243690:intron 35.0%
!! AATGCAGAAGCTTTATTGGT+TGG - chr2_2:20976842-20976861 Msa0243690:intron 35.0%
! TTTATTGGTTGGATCTCACA+TGG - chr2_2:20976853-20976872 Msa0243690:intron 35.0%
ATTCATGTCTCTGACTTTGA+TGG - chr2_2:20976965-20976984 Msa0243690:intron 35.0%
TTCATGTCTCTGACTTTGAT+GGG - chr2_2:20976966-20976985 Msa0243690:intron 35.0%
!!! GATGGGTACTTATTTTGGTT+AGG - chr2_2:20976983-20977002 Msa0243690:intron 35.0%
GTTGATGCTGGTAAATTTGA+TGG - chr2_2:20977014-20977033 Msa0243690:intron 35.0%
ATGGAAAGCTGCAAAATCTA+AGG - chr2_2:20977087-20977106 Msa0243690:intron 35.0%
TAGTGAATTGGGATTCAAGA+TGG + chr2_2:20977293-20977312 None:intergenic 35.0%
AATCATCATCTTGGAAATGC+TGG - chr2_2:20977338-20977357 Msa0243690:intron 35.0%
TCATGTGATCTAATCTTTGC+AGG - chr2_2:20977395-20977414 Msa0243690:intron 35.0%
! GATTGCATTTTGTGATGAAG+AGG - chr2_2:20977419-20977438 Msa0243690:intron 35.0%
!! ATACCTGATAAGAGGTATCA+AGG - chr2_2:20977513-20977532 Msa0243690:intron 35.0%
TTTCCTTGATACCTCTTATC+AGG + chr2_2:20977519-20977538 None:intergenic 35.0%
TTTCTGTTGGAACTTGTGTT+GGG + chr2_2:20977725-20977744 None:intergenic 35.0%
AACACAAGTTCCAACAGAAA+CGG - chr2_2:20977725-20977744 Msa0243690:intron 35.0%
!! GTGAGTTTGCTATCAAATGT+AGG + chr2_2:20977752-20977771 None:intergenic 35.0%
!!! GAACCTTGGTTTTACTAATG+AGG - chr2_2:20977978-20977997 Msa0243690:CDS 35.0%
TCTCCTCATTAGTAAAACCA+AGG + chr2_2:20977984-20978003 None:intergenic 35.0%
! CAGTAGTTTGTCTAACTCAA+CGG - chr2_2:20978035-20978054 Msa0243690:intron 35.0%
ATTTCGATGCAACAGAAACC+TGG - chr2_2:20975388-20975407 Msa0243690:CDS 40.0%
AAACATCAAACAAGCTGAGC+TGG + chr2_2:20975442-20975461 None:intergenic 40.0%
GGACTAACACCTCTGATAAA+AGG - chr2_2:20975714-20975733 Msa0243690:intron 40.0%
GGCTTCATGGATGTTTATGA+TGG - chr2_2:20975842-20975861 Msa0243690:intron 40.0%
! CGTACGGCAATTTAAAACCT+TGG - chr2_2:20975981-20976000 Msa0243690:CDS 40.0%
TCACTCTCTTATTGCATTGC+TGG + chr2_2:20976033-20976052 None:intergenic 40.0%
!! AATGTTGGTGTTGGATGAAC+AGG - chr2_2:20976593-20976612 Msa0243690:CDS 40.0%
AATAAGATTTATCGCCCTCG+TGG + chr2_2:20976667-20976686 None:intergenic 40.0%
GACCAAATGGGAAATGTACA+TGG - chr2_2:20976797-20976816 Msa0243690:CDS 40.0%
GACCATGTACATTTCCCATT+TGG + chr2_2:20976802-20976821 None:intergenic 40.0%
! AAATGTACATGGTCGAGTTG+AGG - chr2_2:20976808-20976827 Msa0243690:intron 40.0%
!! AATGTACATGGTCGAGTTGA+GGG - chr2_2:20976809-20976828 Msa0243690:intron 40.0%
! GGTAAATTTGATGGAGCACT+AGG - chr2_2:20977023-20977042 Msa0243690:intron 40.0%
GGGATTCAGCATAGTGAATT+GGG + chr2_2:20977304-20977323 None:intergenic 40.0%
CAAACTACTTTCTTAGGCAG+TGG - chr2_2:20977453-20977472 Msa0243690:intron 40.0%
CATTGGAGATACCTGATAAG+AGG - chr2_2:20977505-20977524 Msa0243690:intron 40.0%
TTCTGTTGGAACTTGTGTTG+GGG + chr2_2:20977724-20977743 None:intergenic 40.0%
GTTTCTGTTGGAACTTGTGT+TGG + chr2_2:20977726-20977745 None:intergenic 40.0%
GCAACAAACTAGTGAGAAAG+AGG - chr2_2:20977876-20977895 Msa0243690:intron 40.0%
GCAACAGAAACCTGGAAAAG+AGG - chr2_2:20975396-20975415 Msa0243690:CDS 45.0%
! GAGGACACACCTTTTATCAG+AGG + chr2_2:20975726-20975745 None:intergenic 45.0%
TCACATGTGTCATCTGGTGT+TGG + chr2_2:20975748-20975767 None:intergenic 45.0%
! CGATGTGTCATTATCGTGTC+CGG - chr2_2:20975803-20975822 Msa0243690:intron 45.0%
GCTTAAATTGCAGCTGCGTA+CGG - chr2_2:20975965-20975984 Msa0243690:CDS 45.0%
! TCCGCAGATTCTAAGAGATG+AGG - chr2_2:20976272-20976291 Msa0243690:intron 45.0%
GCCTCATCTCTTAGAATCTG+CGG + chr2_2:20976276-20976295 None:intergenic 45.0%
! GATTCTAAGAGATGAGGCAG+TGG - chr2_2:20976278-20976297 Msa0243690:intron 45.0%
!! AAGGCTTGTTGAGCTTGGAA+AGG - chr2_2:20976302-20976321 Msa0243690:intron 45.0%
ATGCTAGTGGCTATCTAGAG+AGG - chr2_2:20976622-20976641 Msa0243690:CDS 45.0%
!! TTTTGAGTCATGCATCCACG+AGG - chr2_2:20976649-20976668 Msa0243690:intron 45.0%
TTTGAGTCATGCATCCACGA+GGG - chr2_2:20976650-20976669 Msa0243690:intron 45.0%
CGAAAATGGATGGAAGATGC+TGG - chr2_2:20976687-20976706 Msa0243690:intron 45.0%
TTTCAGTTGGGTGGACCAAA+TGG - chr2_2:20976784-20976803 Msa0243690:CDS 45.0%
TTCAGTTGGGTGGACCAAAT+GGG - chr2_2:20976785-20976804 Msa0243690:CDS 45.0%
TAGGACACTGTTGTTGATGC+TGG - chr2_2:20977002-20977021 Msa0243690:intron 45.0%
! AAATCTAAGGCGTCCTGTTG+AGG - chr2_2:20977100-20977119 Msa0243690:intron 45.0%
AGGTCAGTGTGTCAAGCAAT+TGG - chr2_2:20977120-20977139 Msa0243690:CDS 45.0%
CGGGATTCAGCATAGTGAAT+TGG + chr2_2:20977305-20977324 None:intergenic 45.0%
GGTATCTCCAATGTTGTAGC+AGG + chr2_2:20977498-20977517 None:intergenic 45.0%
TCTGTTGGAACTTGTGTTGG+GGG + chr2_2:20977723-20977742 None:intergenic 45.0%
AAATGTAGGGCCGTTTCTGT+TGG + chr2_2:20977738-20977757 None:intergenic 45.0%
! TTCAGGTACGCCTCTTTTCC+AGG + chr2_2:20975409-20975428 None:intergenic 50.0%
!! GAGCTGGCGTTTGTTGATTC+AGG + chr2_2:20975426-20975445 None:intergenic 50.0%
! CATGTGTCATCTGGTGTTGG+AGG + chr2_2:20975745-20975764 None:intergenic 50.0%
TAAGAGATGAGGCAGTGGCA+AGG - chr2_2:20976283-20976302 Msa0243690:intron 50.0%
GAACAGGTTAGCGATGCTAG+TGG - chr2_2:20976609-20976628 Msa0243690:CDS 50.0%
CTTGACACACTGACCTCAAC+AGG + chr2_2:20977116-20977135 None:intergenic 50.0%
!! TTAGGCAGTGGTGCTATAGC+TGG - chr2_2:20977465-20977484 Msa0243690:intron 50.0%
CTCTCTGTGTCCTAACAGCT+TGG + chr2_2:20978101-20978120 None:intergenic 50.0%
AGCTGTTAGGACACAGAGAG+AGG - chr2_2:20978101-20978120 Msa0243690:intron 50.0%
! TCCGGTGTCTGTGTCACTCA+GGG - chr2_2:20975821-20975840 Msa0243690:intron 55.0%
! CTGTGTCACTCAGGGCTTCA+TGG - chr2_2:20975829-20975848 Msa0243690:intron 55.0%
!! GTGGCAAGGCTTGTTGAGCT+TGG - chr2_2:20976297-20976316 Msa0243690:intron 55.0%
! GTCCGGTGTCTGTGTCACTC+AGG - chr2_2:20975820-20975839 Msa0243690:intron 60.0%
GCCCTGAGTGACACAGACAC+CGG + chr2_2:20975825-20975844 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 20975303 20978128 20975303 ID=Msa0243690;Name=Msa0243690
chr2_2 mRNA 20975303 20978128 20975303 ID=Msa0243690-mRNA-1;Parent=Msa0243690;Name=Msa0243690-mRNA-1;_AED=0.47;_eAED=0.47;_QI=0|0.5|0.44|0.88|0.62|0.66|9|0|253
chr2_2 exon 20978122 20978128 20978122 ID=Msa0243690-mRNA-1:exon:8388;Parent=Msa0243690-mRNA-1
chr2_2 exon 20977974 20978043 20977974 ID=Msa0243690-mRNA-1:exon:8387;Parent=Msa0243690-mRNA-1
chr2_2 exon 20977339 20977346 20977339 ID=Msa0243690-mRNA-1:exon:8386;Parent=Msa0243690-mRNA-1
chr2_2 exon 20977108 20977199 20977108 ID=Msa0243690-mRNA-1:exon:8385;Parent=Msa0243690-mRNA-1
chr2_2 exon 20976713 20976816 20976713 ID=Msa0243690-mRNA-1:exon:8384;Parent=Msa0243690-mRNA-1
chr2_2 exon 20976557 20976641 20976557 ID=Msa0243690-mRNA-1:exon:8383;Parent=Msa0243690-mRNA-1
chr2_2 exon 20976310 20976426 20976310 ID=Msa0243690-mRNA-1:exon:8382;Parent=Msa0243690-mRNA-1
chr2_2 exon 20975905 20976014 20975905 ID=Msa0243690-mRNA-1:exon:8381;Parent=Msa0243690-mRNA-1
chr2_2 exon 20975303 20975471 20975303 ID=Msa0243690-mRNA-1:exon:8380;Parent=Msa0243690-mRNA-1
chr2_2 CDS 20978122 20978128 20978122 ID=Msa0243690-mRNA-1:cds;Parent=Msa0243690-mRNA-1
chr2_2 CDS 20977974 20978043 20977974 ID=Msa0243690-mRNA-1:cds;Parent=Msa0243690-mRNA-1
chr2_2 CDS 20977339 20977346 20977339 ID=Msa0243690-mRNA-1:cds;Parent=Msa0243690-mRNA-1
chr2_2 CDS 20977108 20977199 20977108 ID=Msa0243690-mRNA-1:cds;Parent=Msa0243690-mRNA-1
chr2_2 CDS 20976713 20976816 20976713 ID=Msa0243690-mRNA-1:cds;Parent=Msa0243690-mRNA-1
chr2_2 CDS 20976557 20976641 20976557 ID=Msa0243690-mRNA-1:cds;Parent=Msa0243690-mRNA-1
chr2_2 CDS 20976310 20976426 20976310 ID=Msa0243690-mRNA-1:cds;Parent=Msa0243690-mRNA-1
chr2_2 CDS 20975905 20976014 20975905 ID=Msa0243690-mRNA-1:cds;Parent=Msa0243690-mRNA-1
chr2_2 CDS 20975303 20975471 20975303 ID=Msa0243690-mRNA-1:cds;Parent=Msa0243690-mRNA-1
Gene Sequence

>Msa0243690

ATGGAATATTTCGATGCAACAGAAACCTGGAAAAGAGGCGTACCTGAATCAACAAACGCCAGCTCAGCTTGTTTGATGTTTTGTGGAATTGAAACTGGAGATTTAGAAAAACGGGGTGATTTGTTTCCGCAGATTCTAAGAGATGAGGCAGTGGCAAGGCTTGTTGAGCTTGGAAAGGTTAGCGATGCTAGTGGCTATCTAGAGAGGACATTTTTGAGTCATGCATCCACGAGGGCGATAAATCTTATTCGAAAATGGATGGAAGATGCTGGTTTGAGAACTTGGGTGGACCAAATGGGAAATGTACATGGTCGAGTTGAGGGTGCAAATGCAAATGCAGAAGCTTTATTGGTTGGATCTCACATGGACACTGTTGTTGATGCTGGTAAATTTGATGGAGCACTAGGAATAGTCTCTGCAATATCTGCATTGAAAGTTATGCATGTCAATGGAAAGCTGCAAAATCTAAGGCGTCCTGTTGAGGTGATTGCATTTTGTGATGAAGAGGGTGTGAGATTTCAAACTACTTTCTTAGGCAGTGGTGCTATAGCTGGTATTTTACCTGCTACAACATTGGAGATACCTGATAAGAGTCATAAATATTTGAATGAGAACCTTGGTTTTACTAATGAGGAGAGTGTTTTTTTTAAGATTGATGAAGTATTCGACAGTAGTTTGTCTAACTCAACGGACACAACTCTACAGTTAGCTAGTGACACTATTATTGTTAACCAAGCTGTTAGGACACAGAGAGAGGAATAA

Protein sequence

>Msa0243690

MEYFDATETWKRGVPESTNASSACLMFCGIETGDLEKRGDLFPQILRDEAVARLVELGKVSDASGYLERTFLSHASTRAINLIRKWMEDAGLRTWVDQMGNVHGRVEGANANAEALLVGSHMDTVVDAGKFDGALGIVSAISALKVMHVNGKLQNLRRPVEVIAFCDEEGVRFQTTFLGSGAIAGILPATTLEIPDKSHKYLNENLGFTNEESVFFKIDEVFDSSLSNSTDTTLQLASDTIIVNQAVRTQREE*