Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1279370 | XP_024628019.1 | 86.111 | 504 | 34 | 4 | 1 | 468 | 1 | 504 | 0.0 | 805 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1279370 | sp|A9XMT3|CCLOP_LOTJA | 55.278 | 521 | 177 | 12 | 1 | 468 | 1 | 518 | 2.86e-176 | 507 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1279370 | A0A3G2SGQ0 | 85.647 | 425 | 24 | 4 | 78 | 467 | 1 | 423 | 0.0 | 663 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0766630 | Msa1279370 | 0.800069 | 1.713295e-48 | -8.615850e-47 |
| Msa1253000 | Msa1279370 | 0.817163 | 3.802435e-52 | -8.615850e-47 |
| Msa1014540 | Msa1279370 | 0.800513 | 1.391483e-48 | -8.615850e-47 |
| Msa1200030 | Msa1279370 | 0.946588 | 3.466500e-105 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1279370 | MtrunA17_Chr8g0369511 | 71.372 | 503 | 39 | 8 | 1 | 468 | 1 | 433 | 0.0 | 607 |
| Msa1279370 | MtrunA17_Chr5g0409341 | 55.299 | 519 | 175 | 13 | 1 | 468 | 1 | 513 | 1.48e-170 | 489 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 81 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACGCCTTGTTTCGCTATT+TGG | 0.110001 | 8_3:-16324059 | None:intergenic |
| ATCCAAGTCAATTAGGTTTA+TGG | 0.146050 | 8_3:-16324244 | None:intergenic |
| CAAGAAGTTTCAAATTTAAA+TGG | 0.233249 | 8_3:+16323883 | Msa1279370:CDS |
| GATTTCAATCAATTTCCTTT+AGG | 0.233408 | 8_3:+16323264 | Msa1279370:CDS |
| ATTTCAATCAATTTCCTTTA+GGG | 0.237507 | 8_3:+16323265 | Msa1279370:CDS |
| TTCAAGACAGCTTGCATATC+AGG | 0.255379 | 8_3:-16325000 | None:intergenic |
| TGATGAAAAGGAACGCCTTC+TGG | 0.271498 | 8_3:+16325146 | Msa1279370:CDS |
| CTAAACCATCCAAGTCAATT+AGG | 0.282523 | 8_3:-16324251 | None:intergenic |
| AATCGAAAGAAATAGATTAA+TGG | 0.309545 | 8_3:-16323124 | None:intergenic |
| TATTTCCTCCAAACTAGTTT+TGG | 0.309614 | 8_3:+16324120 | Msa1279370:CDS |
| TCCCTTCACCAAAACTAGTT+TGG | 0.310267 | 8_3:-16324128 | None:intergenic |
| TCTGTAACATCAGCTATTTC+AGG | 0.315882 | 8_3:+16324709 | Msa1279370:CDS |
| GAGTCTCCTTCGACATATAT+TGG | 0.334178 | 8_3:-16324174 | None:intergenic |
| TTGGTGAAGGGAATGAAAAT+TGG | 0.344837 | 8_3:+16324139 | Msa1279370:CDS |
| AGTTGGAGGAAGTACAAGTT+TGG | 0.349381 | 8_3:+16324416 | Msa1279370:CDS |
| TGAGGATTTGATTGATGAAA+AGG | 0.358635 | 8_3:+16325134 | Msa1279370:CDS |
| GAAGCTGAGCTCAAATATAT+TGG | 0.360581 | 8_3:-16324288 | None:intergenic |
| TTAATTTATCCTTCATGAAC+AGG | 0.376611 | 8_3:+16325064 | Msa1279370:CDS |
| ATTGACGAAGACGAATTTGA+TGG | 0.378481 | 8_3:-16323943 | None:intergenic |
| GTTGGTATTGGTACTCCAAT+AGG | 0.380354 | 8_3:-16322387 | None:intergenic |
| ATGAGCTTTCACAAAGAGTC+TGG | 0.399662 | 8_3:-16324386 | None:intergenic |
| TTTGAATAATCATTCGCCTT+AGG | 0.409162 | 8_3:-16323240 | None:intergenic |
| GATTGTTGAACTTCATCAAC+AGG | 0.417092 | 8_3:-16323405 | None:intergenic |
| AGACTCTACTATTCAAGTTA+AGG | 0.423459 | 8_3:+16324191 | Msa1279370:CDS |
| CATGGACATGCCGAGTTTCA+AGG | 0.430841 | 8_3:+16322410 | Msa1279370:CDS |
| GCTGCAACATTAGTCTCTAC+TGG | 0.437402 | 8_3:+16324330 | Msa1279370:CDS |
| ACATTGATGGATAACCCTAT+TGG | 0.443403 | 8_3:+16322372 | Msa1279370:CDS |
| CTTCACCAAAACTAGTTTGG+AGG | 0.447143 | 8_3:-16324125 | None:intergenic |
| GTCTTGCATAATTCTTCCCT+CGG | 0.451809 | 8_3:-16323214 | None:intergenic |
| TTGGTATTGGTACTCCAATA+GGG | 0.470136 | 8_3:-16322386 | None:intergenic |
| AATTAATTATGCAGAGGAGA+AGG | 0.477929 | 8_3:+16324805 | Msa1279370:intron |
| GAAAGCTCATGGAATAAAGT+TGG | 0.479707 | 8_3:+16324399 | Msa1279370:CDS |
| TTTAACAACCTTAATCAAAA+GGG | 0.492308 | 8_3:+16323907 | Msa1279370:CDS |
| AGACTCTTTGTGAAAGCTCA+TGG | 0.493197 | 8_3:+16324388 | Msa1279370:CDS |
| GGCATGTCCATGGTTGGTAT+TGG | 0.494062 | 8_3:-16322399 | None:intergenic |
| CCCTACTACAATTACCCTAA+AGG | 0.517095 | 8_3:-16323279 | None:intergenic |
| TGAACAAACAAAGCAGATAG+AGG | 0.517837 | 8_3:+16325095 | Msa1279370:CDS |
| ATAAACCTAATTGACTTGGA+TGG | 0.525607 | 8_3:+16324246 | Msa1279370:CDS |
| TCAAGACAGCTTGCATATCA+GGG | 0.528479 | 8_3:-16324999 | None:intergenic |
| AGAATCCTTCCTGTTCATGA+AGG | 0.528752 | 8_3:-16325073 | None:intergenic |
| TTAGTCTCTACTGGTTTCGA+TGG | 0.529588 | 8_3:+16324339 | Msa1279370:CDS |
| CTTGAAACTCGGCATGTCCA+TGG | 0.532565 | 8_3:-16322409 | None:intergenic |
| ATACATAGATTGAGATGGAA+GGG | 0.543146 | 8_3:+16322298 | None:intergenic |
| TAGATTGAGATGGAAGGGAG+AGG | 0.543702 | 8_3:+16322303 | None:intergenic |
| TGGAGGAAATAATCTTCTTG+AGG | 0.545125 | 8_3:-16324108 | None:intergenic |
| AATAGAATCTGTTCACATGT+TGG | 0.551048 | 8_3:+16323834 | Msa1279370:CDS |
| ATGCAGAATGGCTGAGGCAA+AGG | 0.552654 | 8_3:+16324951 | Msa1279370:intron |
| TGAGAAACAGCCTTGAAACT+CGG | 0.560332 | 8_3:-16322420 | None:intergenic |
| GATACATAGATTGAGATGGA+AGG | 0.562645 | 8_3:+16322297 | None:intergenic |
| TTGTTTCAATCTCTTCCAGA+AGG | 0.563367 | 8_3:-16325161 | None:intergenic |
| ATTGTAATGCAGAATGGCTG+AGG | 0.565851 | 8_3:+16324945 | Msa1279370:intron |
| AGCTCATGGAATAAAGTTGG+AGG | 0.576429 | 8_3:+16324402 | Msa1279370:CDS |
| AAATATGTCTGTAATATCCG+AGG | 0.579761 | 8_3:+16323197 | Msa1279370:CDS |
| TTTATCCTTCATGAACAGGA+AGG | 0.580426 | 8_3:+16325068 | Msa1279370:CDS |
| ATCCATAAACCTAATTGACT+TGG | 0.585153 | 8_3:+16324242 | Msa1279370:CDS |
| AATTATGCAAGACGATCCTA+AGG | 0.585758 | 8_3:+16323224 | Msa1279370:CDS |
| GGACCTTCATAAGCAAAATG+AGG | 0.588458 | 8_3:+16325116 | Msa1279370:CDS |
| CAAAATCCAATATATGTCGA+AGG | 0.593741 | 8_3:+16324168 | Msa1279370:CDS |
| ATGATCGAACTTCCTTCTCG+AGG | 0.593743 | 8_3:-16325035 | None:intergenic |
| AAAGTGGTTAACAAATGAAG+AGG | 0.597315 | 8_3:+16322476 | Msa1279370:CDS |
| CACATGTTGGCCACTCAGAA+TGG | 0.598667 | 8_3:+16323847 | Msa1279370:CDS |
| AGAGTCTGGCTTGATATGCA+TGG | 0.600443 | 8_3:-16324372 | None:intergenic |
| CTTGTGCTACTTGAGCATTG+TGG | 0.600889 | 8_3:-16323810 | None:intergenic |
| CACAATGCTCAAGTAGCACA+AGG | 0.601713 | 8_3:+16323811 | Msa1279370:CDS |
| TGGAGTACCAATACCAACCA+TGG | 0.606350 | 8_3:+16322392 | Msa1279370:CDS |
| AAACTCGGCATGTCCATGGT+TGG | 0.610084 | 8_3:-16322405 | None:intergenic |
| TTATCTGAAAGATGATAGAG+AGG | 0.611706 | 8_3:+16324557 | Msa1279370:CDS |
| GAATGGCTGAGGCAAAGGAA+AGG | 0.630169 | 8_3:+16324956 | Msa1279370:intron |
| ACTGGTTTCGATGGATGCGA+CGG | 0.631529 | 8_3:+16324348 | Msa1279370:CDS |
| AGCAGCCAAATAGCGAAACA+AGG | 0.638063 | 8_3:+16324054 | Msa1279370:CDS |
| AGTTTGGAAAATAGAGTCAG+AGG | 0.639120 | 8_3:+16324432 | Msa1279370:CDS |
| GCAGCAATAGAAGATTCACT+TGG | 0.640418 | 8_3:-16324312 | None:intergenic |
| CAAGACAGCTTGCATATCAG+GGG | 0.647747 | 8_3:-16324998 | None:intergenic |
| CCAAATAGCGAAACAAGGCG+TGG | 0.648642 | 8_3:+16324059 | Msa1279370:CDS |
| ATTGTTATCACCATTCTGAG+TGG | 0.655235 | 8_3:-16323857 | None:intergenic |
| GCGATGCGAAGACCTCGAGA+AGG | 0.656367 | 8_3:+16325023 | Msa1279370:CDS |
| AATATGTCTGTAATATCCGA+GGG | 0.656938 | 8_3:+16323198 | Msa1279370:CDS |
| CTTATACAAGAATTCAAGTG+AGG | 0.660852 | 8_3:+16322335 | Msa1279370:CDS |
| AAGACAGCTTGCATATCAGG+GGG | 0.686630 | 8_3:-16324997 | None:intergenic |
| ATAGTTCAGATGATATTCTG+CGG | 0.698272 | 8_3:-16323155 | None:intergenic |
| AAGCTTTAGAACAGACAGTG+AGG | 0.721284 | 8_3:+16322443 | Msa1279370:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGTTGTAACATTGTATAT+TGG | + | chr8_3:16322507-16322526 | Msa1279370:intron | 20.0% |
| !!! | TTTTATGATAACAGTTTGTT+TGG | + | chr8_3:16322569-16322588 | Msa1279370:intron | 20.0% |
| !! | CTAAAAGAATTTACTTGATT+TGG | + | chr8_3:16322614-16322633 | Msa1279370:intron | 20.0% |
| !!! | TGATAGATACTAAATTTTAC+AGG | - | chr8_3:16323039-16323058 | None:intergenic | 20.0% |
| !! | AATCGAAAGAAATAGATTAA+TGG | - | chr8_3:16323127-16323146 | None:intergenic | 20.0% |
| !! | ATTTCAATCAATTTCCTTTA+GGG | + | chr8_3:16323265-16323284 | Msa1279370:CDS | 20.0% |
| !!! | ATTTAAAATTACACTGTGAT+TGG | + | chr8_3:16323635-16323654 | Msa1279370:intron | 20.0% |
| !!! | TATAAAATGTTTTACACTGA+CGG | + | chr8_3:16323663-16323682 | Msa1279370:intron | 20.0% |
| !!! | GAAATTTTCAACAACTTATT+TGG | + | chr8_3:16323753-16323772 | Msa1279370:intron | 20.0% |
| !! | CAAGAAGTTTCAAATTTAAA+TGG | + | chr8_3:16323883-16323902 | Msa1279370:CDS | 20.0% |
| !!! | TTTTAACAACCTTAATCAAA+AGG | + | chr8_3:16323906-16323925 | Msa1279370:CDS | 20.0% |
| !! | TTTAACAACCTTAATCAAAA+GGG | + | chr8_3:16323907-16323926 | Msa1279370:CDS | 20.0% |
| !! | AGGTATAATATGATTTGATT+TGG | + | chr8_3:16324452-16324471 | Msa1279370:intron | 20.0% |
| !!! | AGACAAAAATTTTGTTTTTG+TGG | + | chr8_3:16324504-16324523 | Msa1279370:intron | 20.0% |
| !! | AATAAGGTTGTACAAATATT+AGG | - | chr8_3:16324928-16324947 | None:intergenic | 20.0% |
| !! | GAAACAATAGTATCAAAAAA+TGG | + | chr8_3:16325177-16325196 | Msa1279370:CDS | 20.0% |
| !! | ACTTTTCTTGAAAACATTGA+TGG | + | chr8_3:16322359-16322378 | Msa1279370:CDS | 25.0% |
| !!! | AATTTACTTGATTTGGTTTC+AGG | + | chr8_3:16322621-16322640 | Msa1279370:intron | 25.0% |
| !!! | ATTTACTTGATTTGGTTTCA+GGG | + | chr8_3:16322622-16322641 | Msa1279370:intron | 25.0% |
| ! | AATAAGCTGAAAACAACTTA+TGG | + | chr8_3:16322833-16322852 | Msa1279370:intron | 25.0% |
| !! | AAACTTCTGAAAAATAGCTT+TGG | - | chr8_3:16322865-16322884 | None:intergenic | 25.0% |
| ! | AAGCATTTGCAAGAATATTT+AGG | - | chr8_3:16322889-16322908 | None:intergenic | 25.0% |
| ! | CTCAAATAAGAAATTGAAAC+AGG | + | chr8_3:16322924-16322943 | Msa1279370:intron | 25.0% |
| !!! | TCTATTTCTTTCGATTTTGT+TGG | + | chr8_3:16323131-16323150 | Msa1279370:CDS | 25.0% |
| !! | TACAGACATATTTTGCATAT+TGG | - | chr8_3:16323190-16323209 | None:intergenic | 25.0% |
| ! | GATTTCAATCAATTTCCTTT+AGG | + | chr8_3:16323264-16323283 | Msa1279370:CDS | 25.0% |
| ! | CTAGTTCAATGCTTATAATT+TGG | + | chr8_3:16323356-16323375 | Msa1279370:intron | 25.0% |
| ! | ATAACGAAATCAAATCAACA+TGG | - | chr8_3:16323507-16323526 | None:intergenic | 25.0% |
| !!! | AACTAGTTTCTCTGAAATTA+TGG | + | chr8_3:16324606-16324625 | Msa1279370:intron | 25.0% |
| !! | GAGATTTGAACAAGATATTT+TGG | + | chr8_3:16324632-16324651 | Msa1279370:intron | 25.0% |
| !! | CTTTAAATTTTCATTAGCAG+AGG | - | chr8_3:16324905-16324924 | None:intergenic | 25.0% |
| ! | TTAATTTATCCTTCATGAAC+AGG | + | chr8_3:16325064-16325083 | Msa1279370:CDS | 25.0% |
| CTTATACAAGAATTCAAGTG+AGG | + | chr8_3:16322335-16322354 | Msa1279370:CDS | 30.0% | |
| AAAGTGGTTAACAAATGAAG+AGG | + | chr8_3:16322476-16322495 | Msa1279370:CDS | 30.0% | |
| GATACAATTCATCAAGCAAA+GGG | + | chr8_3:16322644-16322663 | Msa1279370:intron | 30.0% | |
| CTTATTTCCATAAACTCTCT+AGG | - | chr8_3:16322819-16322838 | None:intergenic | 30.0% | |
| ATAGTTCAGATGATATTCTG+CGG | - | chr8_3:16323158-16323177 | None:intergenic | 30.0% | |
| AAATATGTCTGTAATATCCG+AGG | + | chr8_3:16323197-16323216 | Msa1279370:CDS | 30.0% | |
| AATATGTCTGTAATATCCGA+GGG | + | chr8_3:16323198-16323217 | Msa1279370:CDS | 30.0% | |
| TTTGAATAATCATTCGCCTT+AGG | - | chr8_3:16323243-16323262 | None:intergenic | 30.0% | |
| GTGAAATCACAACAAAGATA+TGG | - | chr8_3:16323323-16323342 | None:intergenic | 30.0% | |
| ! | TTTGATTTCGTTATTGATGC+AGG | + | chr8_3:16323513-16323532 | Msa1279370:intron | 30.0% |
| TTGTATATACCTCAATTCAG+AGG | - | chr8_3:16323578-16323597 | None:intergenic | 30.0% | |
| TGTCAATCAATCACAATTGT+TGG | + | chr8_3:16323609-16323628 | Msa1279370:intron | 30.0% | |
| ! | ATTTGGTACTCTTTATTTGC+AGG | + | chr8_3:16323770-16323789 | Msa1279370:intron | 30.0% |
| AATAGAATCTGTTCACATGT+TGG | + | chr8_3:16323834-16323853 | Msa1279370:CDS | 30.0% | |
| !! | TATTTCCTCCAAACTAGTTT+TGG | + | chr8_3:16324120-16324139 | Msa1279370:CDS | 30.0% |
| CAAAATCCAATATATGTCGA+AGG | + | chr8_3:16324168-16324187 | Msa1279370:CDS | 30.0% | |
| ! | AGACTCTACTATTCAAGTTA+AGG | + | chr8_3:16324191-16324210 | Msa1279370:CDS | 30.0% |
| ATCCATAAACCTAATTGACT+TGG | + | chr8_3:16324242-16324261 | Msa1279370:CDS | 30.0% | |
| ATCCAAGTCAATTAGGTTTA+TGG | - | chr8_3:16324247-16324266 | None:intergenic | 30.0% | |
| !! | ATAAACCTAATTGACTTGGA+TGG | + | chr8_3:16324246-16324265 | Msa1279370:CDS | 30.0% |
| !!! | TTTTGTTTTTGTGGAACTAC+AGG | + | chr8_3:16324513-16324532 | Msa1279370:intron | 30.0% |
| TTATCTGAAAGATGATAGAG+AGG | + | chr8_3:16324557-16324576 | Msa1279370:CDS | 30.0% | |
| ! | ATTAATTCACTGGTTAGTGA+TGG | - | chr8_3:16324792-16324811 | None:intergenic | 30.0% |
| AATTAATTATGCAGAGGAGA+AGG | + | chr8_3:16324805-16324824 | Msa1279370:intron | 30.0% | |
| AACCTTATTGTAATGCAGAA+TGG | + | chr8_3:16324939-16324958 | Msa1279370:intron | 30.0% | |
| ! | AATCCTCATTTTGCTTATGA+AGG | - | chr8_3:16325122-16325141 | None:intergenic | 30.0% |
| TGAGGATTTGATTGATGAAA+AGG | + | chr8_3:16325134-16325153 | Msa1279370:CDS | 30.0% | |
| ! | ACATTGATGGATAACCCTAT+TGG | + | chr8_3:16322372-16322391 | Msa1279370:CDS | 35.0% |
| !! | TTGGTATTGGTACTCCAATA+GGG | - | chr8_3:16322389-16322408 | None:intergenic | 35.0% |
| GGATACAATTCATCAAGCAA+AGG | + | chr8_3:16322643-16322662 | Msa1279370:intron | 35.0% | |
| TTCATAGTAGACTATCACAG+AGG | + | chr8_3:16322668-16322687 | Msa1279370:intron | 35.0% | |
| !! | CTGAAAAATAGCTTTGGCAA+TGG | - | chr8_3:16322859-16322878 | None:intergenic | 35.0% |
| ATTGATCCTTTGCCATTCAA+TGG | + | chr8_3:16322972-16322991 | Msa1279370:intron | 35.0% | |
| !! | AATGGTTCTAGATGGGTAAT+TGG | + | chr8_3:16322990-16323009 | Msa1279370:intron | 35.0% |
| AATTATGCAAGACGATCCTA+AGG | + | chr8_3:16323224-16323243 | Msa1279370:CDS | 35.0% | |
| !! | TCCTTTAGGGTAATTGTAGT+AGG | + | chr8_3:16323278-16323297 | Msa1279370:intron | 35.0% |
| !! | CCTTTAGGGTAATTGTAGTA+GGG | + | chr8_3:16323279-16323298 | Msa1279370:intron | 35.0% |
| CAACAAAGATATGGTATAGC+AGG | - | chr8_3:16323314-16323333 | None:intergenic | 35.0% | |
| GATTGTTGAACTTCATCAAC+AGG | - | chr8_3:16323408-16323427 | None:intergenic | 35.0% | |
| !! | TAGTAACTTGTTTCTTGCCA+AGG | + | chr8_3:16323428-16323447 | Msa1279370:intron | 35.0% |
| AGTTTGATGTAAGCAAACCT+TGG | - | chr8_3:16323448-16323467 | None:intergenic | 35.0% | |
| ! | TACTCTTTATTTGCAGGCAA+AGG | + | chr8_3:16323776-16323795 | Msa1279370:intron | 35.0% |
| ATTGTTATCACCATTCTGAG+TGG | - | chr8_3:16323860-16323879 | None:intergenic | 35.0% | |
| !! | TGAATGCACCCTTTTGATTA+AGG | - | chr8_3:16323918-16323937 | None:intergenic | 35.0% |
| ATTGACGAAGACGAATTTGA+TGG | - | chr8_3:16323946-16323965 | None:intergenic | 35.0% | |
| TGGAGGAAATAATCTTCTTG+AGG | - | chr8_3:16324111-16324130 | None:intergenic | 35.0% | |
| !!! | TCCAAACTAGTTTTGGTGAA+GGG | + | chr8_3:16324127-16324146 | Msa1279370:CDS | 35.0% |
| TTGGTGAAGGGAATGAAAAT+TGG | + | chr8_3:16324139-16324158 | Msa1279370:CDS | 35.0% | |
| CTAAACCATCCAAGTCAATT+AGG | - | chr8_3:16324254-16324273 | None:intergenic | 35.0% | |
| GAAGCTGAGCTCAAATATAT+TGG | - | chr8_3:16324291-16324310 | None:intergenic | 35.0% | |
| GAAAGCTCATGGAATAAAGT+TGG | + | chr8_3:16324399-16324418 | Msa1279370:CDS | 35.0% | |
| AGTTTGGAAAATAGAGTCAG+AGG | + | chr8_3:16324432-16324451 | Msa1279370:CDS | 35.0% | |
| ! | TTTTGTGGAACTACAGGTTT+CGG | + | chr8_3:16324519-16324538 | Msa1279370:intron | 35.0% |
| ! | TCTGTAACATCAGCTATTTC+AGG | + | chr8_3:16324709-16324728 | Msa1279370:CDS | 35.0% |
| CCTCTGCATAATTAATTCAC+TGG | - | chr8_3:16324802-16324821 | None:intergenic | 35.0% | |
| CCAGTGAATTAATTATGCAG+AGG | + | chr8_3:16324799-16324818 | Msa1279370:intron | 35.0% | |
| AGAATGCCACAAAAAAACGT+AGG | + | chr8_3:16324828-16324847 | Msa1279370:CDS | 35.0% | |
| GAATGCCACAAAAAAACGTA+GGG | + | chr8_3:16324829-16324848 | Msa1279370:CDS | 35.0% | |
| AGCCATTCTGCATTACAATA+AGG | - | chr8_3:16324944-16324963 | None:intergenic | 35.0% | |
| TTTATCCTTCATGAACAGGA+AGG | + | chr8_3:16325068-16325087 | Msa1279370:CDS | 35.0% | |
| TGAACAAACAAAGCAGATAG+AGG | + | chr8_3:16325095-16325114 | Msa1279370:CDS | 35.0% | |
| TTGTTTCAATCTCTTCCAGA+AGG | - | chr8_3:16325164-16325183 | None:intergenic | 35.0% | |
| !! | GTTGGTATTGGTACTCCAAT+AGG | - | chr8_3:16322390-16322409 | None:intergenic | 40.0% |
| TGAGAAACAGCCTTGAAACT+CGG | - | chr8_3:16322423-16322442 | None:intergenic | 40.0% | |
| !! | AAGCTTTAGAACAGACAGTG+AGG | + | chr8_3:16322443-16322462 | Msa1279370:CDS | 40.0% |
| GTGAGGAACTCTTCAAAAAG+TGG | + | chr8_3:16322460-16322479 | Msa1279370:CDS | 40.0% | |
| ACGCTATCCTAGAGAGTTTA+TGG | + | chr8_3:16322809-16322828 | Msa1279370:intron | 40.0% | |
| AAATTGAAACAGGCCTACGA+AGG | + | chr8_3:16322934-16322953 | Msa1279370:intron | 40.0% | |
| CTAGAACCATTGAATGGCAA+AGG | - | chr8_3:16322981-16323000 | None:intergenic | 40.0% | |
| !! | TGCCATTCAATGGTTCTAGA+TGG | + | chr8_3:16322982-16323001 | Msa1279370:intron | 40.0% |
| !! | GCCATTCAATGGTTCTAGAT+GGG | + | chr8_3:16322983-16323002 | Msa1279370:intron | 40.0% |
| ! | ACCCATCTAGAACCATTGAA+TGG | - | chr8_3:16322987-16323006 | None:intergenic | 40.0% |
| ! | ATGGGTAATTGGTTCAAGAG+TGG | + | chr8_3:16323001-16323020 | Msa1279370:intron | 40.0% |
| GTCTTGCATAATTCTTCCCT+CGG | - | chr8_3:16323217-16323236 | None:intergenic | 40.0% | |
| CCCTACTACAATTACCCTAA+AGG | - | chr8_3:16323282-16323301 | None:intergenic | 40.0% | |
| AACTTCATCAACAGGTTCTC+TGG | - | chr8_3:16323400-16323419 | None:intergenic | 40.0% | |
| ! | CTTTGCTGAATCTGAAGCAT+TGG | + | chr8_3:16323468-16323487 | Msa1279370:intron | 40.0% |
| TTTCGTTATTGATGCAGGCT+TGG | + | chr8_3:16323518-16323537 | Msa1279370:intron | 40.0% | |
| ! | CTTCACCAAAACTAGTTTGG+AGG | - | chr8_3:16324128-16324147 | None:intergenic | 40.0% |
| !!! | CTCCAAACTAGTTTTGGTGA+AGG | + | chr8_3:16324126-16324145 | Msa1279370:CDS | 40.0% |
| TCCCTTCACCAAAACTAGTT+TGG | - | chr8_3:16324131-16324150 | None:intergenic | 40.0% | |
| GAGTCTCCTTCGACATATAT+TGG | - | chr8_3:16324177-16324196 | None:intergenic | 40.0% | |
| GCAGCAATAGAAGATTCACT+TGG | - | chr8_3:16324315-16324334 | None:intergenic | 40.0% | |
| !! | TTAGTCTCTACTGGTTTCGA+TGG | + | chr8_3:16324339-16324358 | Msa1279370:CDS | 40.0% |
| ATGAGCTTTCACAAAGAGTC+TGG | - | chr8_3:16324389-16324408 | None:intergenic | 40.0% | |
| AGACTCTTTGTGAAAGCTCA+TGG | + | chr8_3:16324388-16324407 | Msa1279370:CDS | 40.0% | |
| AGCTCATGGAATAAAGTTGG+AGG | + | chr8_3:16324402-16324421 | Msa1279370:CDS | 40.0% | |
| ! | AGTTGGAGGAAGTACAAGTT+TGG | + | chr8_3:16324416-16324435 | Msa1279370:CDS | 40.0% |
| ATTGTAATGCAGAATGGCTG+AGG | + | chr8_3:16324945-16324964 | Msa1279370:intron | 40.0% | |
| TCAAGACAGCTTGCATATCA+GGG | - | chr8_3:16325002-16325021 | None:intergenic | 40.0% | |
| TTCAAGACAGCTTGCATATC+AGG | - | chr8_3:16325003-16325022 | None:intergenic | 40.0% | |
| AGAATCCTTCCTGTTCATGA+AGG | - | chr8_3:16325076-16325095 | None:intergenic | 40.0% | |
| GGACCTTCATAAGCAAAATG+AGG | + | chr8_3:16325116-16325135 | Msa1279370:CDS | 40.0% | |
| ! | TGGAGTACCAATACCAACCA+TGG | + | chr8_3:16322392-16322411 | Msa1279370:CDS | 45.0% |
| !! | GTTTTAGCACCAACCTTCGT+AGG | - | chr8_3:16322950-16322969 | None:intergenic | 45.0% |
| GAAGTCGATCCTCTGAATTG+AGG | + | chr8_3:16323566-16323585 | Msa1279370:intron | 45.0% | |
| !! | CTTGTGCTACTTGAGCATTG+TGG | - | chr8_3:16323813-16323832 | None:intergenic | 45.0% |
| CACAATGCTCAAGTAGCACA+AGG | + | chr8_3:16323811-16323830 | Msa1279370:CDS | 45.0% | |
| AGCAGCCAAATAGCGAAACA+AGG | + | chr8_3:16324054-16324073 | Msa1279370:CDS | 45.0% | |
| ! | GCTGCAACATTAGTCTCTAC+TGG | + | chr8_3:16324330-16324349 | Msa1279370:CDS | 45.0% |
| ! | AGAGTCTGGCTTGATATGCA+TGG | - | chr8_3:16324375-16324394 | None:intergenic | 45.0% |
| TGCCACAAAAAAACGTAGGG+TGG | + | chr8_3:16324832-16324851 | Msa1279370:CDS | 45.0% | |
| !!! | CTCCACCCTACGTTTTTTTG+TGG | - | chr8_3:16324837-16324856 | None:intergenic | 45.0% |
| AAGACAGCTTGCATATCAGG+GGG | - | chr8_3:16325000-16325019 | None:intergenic | 45.0% | |
| CAAGACAGCTTGCATATCAG+GGG | - | chr8_3:16325001-16325020 | None:intergenic | 45.0% | |
| ATGATCGAACTTCCTTCTCG+AGG | - | chr8_3:16325038-16325057 | None:intergenic | 45.0% | |
| TGATGAAAAGGAACGCCTTC+TGG | + | chr8_3:16325146-16325165 | Msa1279370:CDS | 45.0% | |
| ! | GGCATGTCCATGGTTGGTAT+TGG | - | chr8_3:16322402-16322421 | None:intergenic | 50.0% |
| AAACTCGGCATGTCCATGGT+TGG | - | chr8_3:16322408-16322427 | None:intergenic | 50.0% | |
| CTTGAAACTCGGCATGTCCA+TGG | - | chr8_3:16322412-16322431 | None:intergenic | 50.0% | |
| CATGGACATGCCGAGTTTCA+AGG | + | chr8_3:16322410-16322429 | Msa1279370:CDS | 50.0% | |
| TGAAACAGGCCTACGAAGGT+TGG | + | chr8_3:16322938-16322957 | Msa1279370:intron | 50.0% | |
| CACATGTTGGCCACTCAGAA+TGG | + | chr8_3:16323847-16323866 | Msa1279370:CDS | 50.0% | |
| !! | CCACGCCTTGTTTCGCTATT+TGG | - | chr8_3:16324062-16324081 | None:intergenic | 50.0% |
| CCAAATAGCGAAACAAGGCG+TGG | + | chr8_3:16324059-16324078 | Msa1279370:CDS | 50.0% | |
| ! | ACTGGTTTCGATGGATGCGA+CGG | + | chr8_3:16324348-16324367 | Msa1279370:CDS | 50.0% |
| ATGCAGAATGGCTGAGGCAA+AGG | + | chr8_3:16324951-16324970 | Msa1279370:intron | 50.0% | |
| GAATGGCTGAGGCAAAGGAA+AGG | + | chr8_3:16324956-16324975 | Msa1279370:intron | 50.0% | |
| TGCATATCAGGGGGAATGGA+TGG | - | chr8_3:16324991-16325010 | None:intergenic | 50.0% | |
| AGCTTGCATATCAGGGGGAA+TGG | - | chr8_3:16324995-16325014 | None:intergenic | 50.0% | |
| GCGATGCGAAGACCTCGAGA+AGG | + | chr8_3:16325023-16325042 | Msa1279370:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 16322312 | 16325209 | 16322312 | ID=Msa1279370;Name=Msa1279370 |
| chr8_3 | mRNA | 16322312 | 16325209 | 16322312 | ID=Msa1279370-mRNA-1;Parent=Msa1279370;Name=Msa1279370-mRNA-1;_AED=0.08;_eAED=0.09;_QI=0|0.11|0|1|0.55|0.4|10|0|468 |
| chr8_3 | exon | 16322312 | 16322501 | 16322312 | ID=Msa1279370-mRNA-1:exon:6398;Parent=Msa1279370-mRNA-1 |
| chr8_3 | exon | 16323121 | 16323286 | 16323121 | ID=Msa1279370-mRNA-1:exon:6399;Parent=Msa1279370-mRNA-1 |
| chr8_3 | exon | 16323401 | 16323436 | 16323401 | ID=Msa1279370-mRNA-1:exon:6400;Parent=Msa1279370-mRNA-1 |
| chr8_3 | exon | 16323792 | 16324014 | 16323792 | ID=Msa1279370-mRNA-1:exon:6401;Parent=Msa1279370-mRNA-1 |
| chr8_3 | exon | 16324048 | 16324267 | 16324048 | ID=Msa1279370-mRNA-1:exon:6402;Parent=Msa1279370-mRNA-1 |
| chr8_3 | exon | 16324274 | 16324453 | 16324274 | ID=Msa1279370-mRNA-1:exon:6403;Parent=Msa1279370-mRNA-1 |
| chr8_3 | exon | 16324535 | 16324578 | 16324535 | ID=Msa1279370-mRNA-1:exon:6404;Parent=Msa1279370-mRNA-1 |
| chr8_3 | exon | 16324685 | 16324730 | 16324685 | ID=Msa1279370-mRNA-1:exon:6405;Parent=Msa1279370-mRNA-1 |
| chr8_3 | exon | 16324819 | 16324867 | 16324819 | ID=Msa1279370-mRNA-1:exon:6406;Parent=Msa1279370-mRNA-1 |
| chr8_3 | exon | 16324957 | 16325209 | 16324957 | ID=Msa1279370-mRNA-1:exon:6407;Parent=Msa1279370-mRNA-1 |
| chr8_3 | CDS | 16322312 | 16322501 | 16322312 | ID=Msa1279370-mRNA-1:cds;Parent=Msa1279370-mRNA-1 |
| chr8_3 | CDS | 16323121 | 16323286 | 16323121 | ID=Msa1279370-mRNA-1:cds;Parent=Msa1279370-mRNA-1 |
| chr8_3 | CDS | 16323401 | 16323436 | 16323401 | ID=Msa1279370-mRNA-1:cds;Parent=Msa1279370-mRNA-1 |
| chr8_3 | CDS | 16323792 | 16324014 | 16323792 | ID=Msa1279370-mRNA-1:cds;Parent=Msa1279370-mRNA-1 |
| chr8_3 | CDS | 16324048 | 16324267 | 16324048 | ID=Msa1279370-mRNA-1:cds;Parent=Msa1279370-mRNA-1 |
| chr8_3 | CDS | 16324274 | 16324453 | 16324274 | ID=Msa1279370-mRNA-1:cds;Parent=Msa1279370-mRNA-1 |
| chr8_3 | CDS | 16324535 | 16324578 | 16324535 | ID=Msa1279370-mRNA-1:cds;Parent=Msa1279370-mRNA-1 |
| chr8_3 | CDS | 16324685 | 16324730 | 16324685 | ID=Msa1279370-mRNA-1:cds;Parent=Msa1279370-mRNA-1 |
| chr8_3 | CDS | 16324819 | 16324867 | 16324819 | ID=Msa1279370-mRNA-1:cds;Parent=Msa1279370-mRNA-1 |
| chr8_3 | CDS | 16324957 | 16325209 | 16324957 | ID=Msa1279370-mRNA-1:cds;Parent=Msa1279370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
