Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1200030 | XP_024628019.1 | 86.111 | 504 | 34 | 4 | 1 | 468 | 1 | 504 | 0.0 | 805 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1200030 | sp|A9XMT3|CCLOP_LOTJA | 55.278 | 521 | 177 | 12 | 1 | 468 | 1 | 518 | 2.86e-176 | 507 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0766630 | Msa1200030 | 0.818021 | 2.436076e-52 | -8.615850e-47 |
| Msa0220740 | Msa1200030 | 0.815697 | 8.093629e-52 | -8.615850e-47 |
| Msa1082500 | Msa1200030 | 0.802782 | 4.763638e-49 | -8.615850e-47 |
| Msa0322690 | Msa1200030 | 0.804642 | 1.959016e-49 | -8.615850e-47 |
| Msa1200030 | Msa1253000 | 0.802105 | 6.568565e-49 | -8.615850e-47 |
| Msa1200030 | Msa1279370 | 0.946588 | 3.466500e-105 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1200030 | MtrunA17_Chr8g0369511 | 71.372 | 503 | 39 | 8 | 1 | 468 | 1 | 433 | 0.0 | 607 |
| Msa1200030 | MtrunA17_Chr5g0409341 | 55.299 | 519 | 175 | 13 | 1 | 468 | 1 | 513 | 1.48e-170 | 489 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 81 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACGCCTTGTTTCGCTATT+TGG | 0.110001 | 8_1:+52320272 | None:intergenic |
| ATCCAAGTCAATTAGGTTTA+TGG | 0.146050 | 8_1:+52320087 | None:intergenic |
| CAAGAAGTTTCAAATTTAAA+TGG | 0.233249 | 8_1:-52320448 | Msa1200030:CDS |
| GATTTCAATCAATTTCCTTT+AGG | 0.233408 | 8_1:-52321067 | Msa1200030:CDS |
| ATTTCAATCAATTTCCTTTA+GGG | 0.237507 | 8_1:-52321066 | Msa1200030:intron |
| TTCAAGACAGCTTGCATATC+AGG | 0.255379 | 8_1:+52319331 | None:intergenic |
| TGATGAAAAGGAACGCCTTC+TGG | 0.271498 | 8_1:-52319185 | Msa1200030:CDS |
| CTAAACCATCCAAGTCAATT+AGG | 0.282523 | 8_1:+52320080 | None:intergenic |
| AATCGAAAGAAATAGATTAA+TGG | 0.309545 | 8_1:+52321207 | None:intergenic |
| TATTTCCTCCAAACTAGTTT+TGG | 0.309614 | 8_1:-52320211 | Msa1200030:CDS |
| TCCCTTCACCAAAACTAGTT+TGG | 0.310267 | 8_1:+52320203 | None:intergenic |
| TCTGTAACATCAGCTATTTC+AGG | 0.315882 | 8_1:-52319622 | Msa1200030:intron |
| GAGTCTCCTTCGACATATAT+TGG | 0.334178 | 8_1:+52320157 | None:intergenic |
| TTGGTGAAGGGAATGAAAAT+TGG | 0.344837 | 8_1:-52320192 | Msa1200030:CDS |
| AGTTGGAGGAAGTACAAGTT+TGG | 0.349381 | 8_1:-52319915 | Msa1200030:CDS |
| TGAGGATTTGATTGATGAAA+AGG | 0.358635 | 8_1:-52319197 | Msa1200030:CDS |
| GAAGCTGAGCTCAAATATAT+TGG | 0.360581 | 8_1:+52320043 | None:intergenic |
| TTAATTTATCCTTCATGAAC+AGG | 0.376611 | 8_1:-52319267 | Msa1200030:CDS |
| ATTGACGAAGACGAATTTGA+TGG | 0.378481 | 8_1:+52320388 | None:intergenic |
| GTTGGTATTGGTACTCCAAT+AGG | 0.380354 | 8_1:+52321944 | None:intergenic |
| ATGAGCTTTCACAAAGAGTC+TGG | 0.399662 | 8_1:+52319945 | None:intergenic |
| TTTGAATAATCATTCGCCTT+AGG | 0.409162 | 8_1:+52321091 | None:intergenic |
| GATTGTTGAACTTCATCAAC+AGG | 0.417092 | 8_1:+52320926 | None:intergenic |
| AGACTCTACTATTCAAGTTA+AGG | 0.423459 | 8_1:-52320140 | Msa1200030:CDS |
| CATGGACATGCCGAGTTTCA+AGG | 0.430841 | 8_1:-52321921 | Msa1200030:CDS |
| GCTGCAACATTAGTCTCTAC+TGG | 0.437402 | 8_1:-52320001 | Msa1200030:CDS |
| ACATTGATGGATAACCCTAT+TGG | 0.443403 | 8_1:-52321959 | Msa1200030:CDS |
| CTTCACCAAAACTAGTTTGG+AGG | 0.447143 | 8_1:+52320206 | None:intergenic |
| GTCTTGCATAATTCTTCCCT+CGG | 0.451809 | 8_1:+52321117 | None:intergenic |
| TTGGTATTGGTACTCCAATA+GGG | 0.470136 | 8_1:+52321945 | None:intergenic |
| AATTAATTATGCAGAGGAGA+AGG | 0.477929 | 8_1:-52319526 | Msa1200030:intron |
| GAAAGCTCATGGAATAAAGT+TGG | 0.479707 | 8_1:-52319932 | Msa1200030:CDS |
| TTTAACAACCTTAATCAAAA+GGG | 0.492308 | 8_1:-52320424 | Msa1200030:CDS |
| AGACTCTTTGTGAAAGCTCA+TGG | 0.493197 | 8_1:-52319943 | Msa1200030:CDS |
| GGCATGTCCATGGTTGGTAT+TGG | 0.494062 | 8_1:+52321932 | None:intergenic |
| CCCTACTACAATTACCCTAA+AGG | 0.517095 | 8_1:+52321052 | None:intergenic |
| TGAACAAACAAAGCAGATAG+AGG | 0.517837 | 8_1:-52319236 | Msa1200030:CDS |
| ATAAACCTAATTGACTTGGA+TGG | 0.525607 | 8_1:-52320085 | Msa1200030:intron |
| TCAAGACAGCTTGCATATCA+GGG | 0.528479 | 8_1:+52319332 | None:intergenic |
| AGAATCCTTCCTGTTCATGA+AGG | 0.528752 | 8_1:+52319258 | None:intergenic |
| TTAGTCTCTACTGGTTTCGA+TGG | 0.529588 | 8_1:-52319992 | Msa1200030:CDS |
| CTTGAAACTCGGCATGTCCA+TGG | 0.532565 | 8_1:+52321922 | None:intergenic |
| ATACATAGATTGAGATGGAA+GGG | 0.543146 | 8_1:-52322033 | None:intergenic |
| TAGATTGAGATGGAAGGGAG+AGG | 0.543702 | 8_1:-52322028 | None:intergenic |
| TGGAGGAAATAATCTTCTTG+AGG | 0.545125 | 8_1:+52320223 | None:intergenic |
| AATAGAATCTGTTCACATGT+TGG | 0.551048 | 8_1:-52320497 | Msa1200030:CDS |
| ATGCAGAATGGCTGAGGCAA+AGG | 0.552654 | 8_1:-52319380 | Msa1200030:intron |
| TGAGAAACAGCCTTGAAACT+CGG | 0.560332 | 8_1:+52321911 | None:intergenic |
| GATACATAGATTGAGATGGA+AGG | 0.562645 | 8_1:-52322034 | None:intergenic |
| TTGTTTCAATCTCTTCCAGA+AGG | 0.563367 | 8_1:+52319170 | None:intergenic |
| ATTGTAATGCAGAATGGCTG+AGG | 0.565851 | 8_1:-52319386 | Msa1200030:intron |
| AGCTCATGGAATAAAGTTGG+AGG | 0.576429 | 8_1:-52319929 | Msa1200030:CDS |
| AAATATGTCTGTAATATCCG+AGG | 0.579761 | 8_1:-52321134 | Msa1200030:CDS |
| TTTATCCTTCATGAACAGGA+AGG | 0.580426 | 8_1:-52319263 | Msa1200030:CDS |
| ATCCATAAACCTAATTGACT+TGG | 0.585153 | 8_1:-52320089 | Msa1200030:CDS |
| AATTATGCAAGACGATCCTA+AGG | 0.585758 | 8_1:-52321107 | Msa1200030:CDS |
| GGACCTTCATAAGCAAAATG+AGG | 0.588458 | 8_1:-52319215 | Msa1200030:CDS |
| CAAAATCCAATATATGTCGA+AGG | 0.593741 | 8_1:-52320163 | Msa1200030:CDS |
| ATGATCGAACTTCCTTCTCG+AGG | 0.593743 | 8_1:+52319296 | None:intergenic |
| AAAGTGGTTAACAAATGAAG+AGG | 0.597315 | 8_1:-52321855 | Msa1200030:CDS |
| CACATGTTGGCCACTCAGAA+TGG | 0.598667 | 8_1:-52320484 | Msa1200030:CDS |
| AGAGTCTGGCTTGATATGCA+TGG | 0.600443 | 8_1:+52319959 | None:intergenic |
| CTTGTGCTACTTGAGCATTG+TGG | 0.600889 | 8_1:+52320521 | None:intergenic |
| CACAATGCTCAAGTAGCACA+AGG | 0.601713 | 8_1:-52320520 | Msa1200030:CDS |
| TGGAGTACCAATACCAACCA+TGG | 0.606350 | 8_1:-52321939 | Msa1200030:CDS |
| AAACTCGGCATGTCCATGGT+TGG | 0.610084 | 8_1:+52321926 | None:intergenic |
| TTATCTGAAAGATGATAGAG+AGG | 0.611706 | 8_1:-52319774 | Msa1200030:intron |
| GAATGGCTGAGGCAAAGGAA+AGG | 0.630169 | 8_1:-52319375 | Msa1200030:CDS |
| ACTGGTTTCGATGGATGCGA+CGG | 0.631529 | 8_1:-52319983 | Msa1200030:CDS |
| AGCAGCCAAATAGCGAAACA+AGG | 0.638063 | 8_1:-52320277 | Msa1200030:CDS |
| AGTTTGGAAAATAGAGTCAG+AGG | 0.639120 | 8_1:-52319899 | Msa1200030:intron |
| GCAGCAATAGAAGATTCACT+TGG | 0.640418 | 8_1:+52320019 | None:intergenic |
| CAAGACAGCTTGCATATCAG+GGG | 0.647747 | 8_1:+52319333 | None:intergenic |
| CCAAATAGCGAAACAAGGCG+TGG | 0.648642 | 8_1:-52320272 | Msa1200030:CDS |
| ATTGTTATCACCATTCTGAG+TGG | 0.655235 | 8_1:+52320474 | None:intergenic |
| GCGATGCGAAGACCTCGAGA+AGG | 0.656367 | 8_1:-52319308 | Msa1200030:CDS |
| AATATGTCTGTAATATCCGA+GGG | 0.656938 | 8_1:-52321133 | Msa1200030:CDS |
| CTTATACAAGAATTCAAGTG+AGG | 0.660852 | 8_1:-52321996 | Msa1200030:CDS |
| AAGACAGCTTGCATATCAGG+GGG | 0.686630 | 8_1:+52319334 | None:intergenic |
| ATAGTTCAGATGATATTCTG+CGG | 0.698272 | 8_1:+52321176 | None:intergenic |
| AAGCTTTAGAACAGACAGTG+AGG | 0.721284 | 8_1:-52321888 | Msa1200030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGTTGTAACATTGTATAT+TGG | - | chr8_1:52319339-52319358 | Msa1200030:CDS | 20.0% |
| !!! | TTTTATGATAACAGTTTGTT+TGG | - | chr8_1:52319401-52319420 | Msa1200030:intron | 20.0% |
| !! | CTAAAAGAATTTACTTGATT+TGG | - | chr8_1:52319446-52319465 | Msa1200030:intron | 20.0% |
| !!! | TGATAGATACTAAATTTTAC+AGG | + | chr8_1:52319871-52319890 | None:intergenic | 20.0% |
| !! | AATCGAAAGAAATAGATTAA+TGG | + | chr8_1:52319959-52319978 | None:intergenic | 20.0% |
| !! | ATTTCAATCAATTTCCTTTA+GGG | - | chr8_1:52320097-52320116 | Msa1200030:CDS | 20.0% |
| !!! | ATTTAAAATTACACTGTGAT+TGG | - | chr8_1:52320467-52320486 | Msa1200030:CDS | 20.0% |
| !!! | TATAAAATGTTTTACACTGA+CGG | - | chr8_1:52320495-52320514 | Msa1200030:CDS | 20.0% |
| !!! | GAAATTTTCAACAACTTATT+TGG | - | chr8_1:52320585-52320604 | Msa1200030:intron | 20.0% |
| !! | CAAGAAGTTTCAAATTTAAA+TGG | - | chr8_1:52320715-52320734 | Msa1200030:intron | 20.0% |
| !!! | TTTTAACAACCTTAATCAAA+AGG | - | chr8_1:52320738-52320757 | Msa1200030:intron | 20.0% |
| !! | TTTAACAACCTTAATCAAAA+GGG | - | chr8_1:52320739-52320758 | Msa1200030:intron | 20.0% |
| !! | AGGTATAATATGATTTGATT+TGG | - | chr8_1:52321284-52321303 | Msa1200030:intron | 20.0% |
| !!! | AGACAAAAATTTTGTTTTTG+TGG | - | chr8_1:52321336-52321355 | Msa1200030:intron | 20.0% |
| !! | AATAAGGTTGTACAAATATT+AGG | + | chr8_1:52321760-52321779 | None:intergenic | 20.0% |
| !! | GAAACAATAGTATCAAAAAA+TGG | - | chr8_1:52322009-52322028 | Msa1200030:CDS | 20.0% |
| !! | ACTTTTCTTGAAAACATTGA+TGG | - | chr8_1:52319191-52319210 | Msa1200030:CDS | 25.0% |
| !!! | AATTTACTTGATTTGGTTTC+AGG | - | chr8_1:52319453-52319472 | Msa1200030:intron | 25.0% |
| !!! | ATTTACTTGATTTGGTTTCA+GGG | - | chr8_1:52319454-52319473 | Msa1200030:intron | 25.0% |
| ! | AATAAGCTGAAAACAACTTA+TGG | - | chr8_1:52319665-52319684 | Msa1200030:intron | 25.0% |
| !! | AAACTTCTGAAAAATAGCTT+TGG | + | chr8_1:52319697-52319716 | None:intergenic | 25.0% |
| ! | AAGCATTTGCAAGAATATTT+AGG | + | chr8_1:52319721-52319740 | None:intergenic | 25.0% |
| ! | CTCAAATAAGAAATTGAAAC+AGG | - | chr8_1:52319756-52319775 | Msa1200030:intron | 25.0% |
| !!! | TCTATTTCTTTCGATTTTGT+TGG | - | chr8_1:52319963-52319982 | Msa1200030:CDS | 25.0% |
| !! | TACAGACATATTTTGCATAT+TGG | + | chr8_1:52320022-52320041 | None:intergenic | 25.0% |
| ! | GATTTCAATCAATTTCCTTT+AGG | - | chr8_1:52320096-52320115 | Msa1200030:CDS | 25.0% |
| ! | CTAGTTCAATGCTTATAATT+TGG | - | chr8_1:52320188-52320207 | Msa1200030:CDS | 25.0% |
| ! | ATAACGAAATCAAATCAACA+TGG | + | chr8_1:52320339-52320358 | None:intergenic | 25.0% |
| !!! | AACTAGTTTCTCTGAAATTA+TGG | - | chr8_1:52321438-52321457 | Msa1200030:intron | 25.0% |
| !! | GAGATTTGAACAAGATATTT+TGG | - | chr8_1:52321464-52321483 | Msa1200030:intron | 25.0% |
| !! | CTTTAAATTTTCATTAGCAG+AGG | + | chr8_1:52321737-52321756 | None:intergenic | 25.0% |
| ! | TTAATTTATCCTTCATGAAC+AGG | - | chr8_1:52321896-52321915 | Msa1200030:CDS | 25.0% |
| CTTATACAAGAATTCAAGTG+AGG | - | chr8_1:52319167-52319186 | Msa1200030:CDS | 30.0% | |
| AAAGTGGTTAACAAATGAAG+AGG | - | chr8_1:52319308-52319327 | Msa1200030:CDS | 30.0% | |
| GATACAATTCATCAAGCAAA+GGG | - | chr8_1:52319476-52319495 | Msa1200030:intron | 30.0% | |
| CTTATTTCCATAAACTCTCT+AGG | + | chr8_1:52319651-52319670 | None:intergenic | 30.0% | |
| ATAGTTCAGATGATATTCTG+CGG | + | chr8_1:52319990-52320009 | None:intergenic | 30.0% | |
| AAATATGTCTGTAATATCCG+AGG | - | chr8_1:52320029-52320048 | Msa1200030:CDS | 30.0% | |
| AATATGTCTGTAATATCCGA+GGG | - | chr8_1:52320030-52320049 | Msa1200030:CDS | 30.0% | |
| TTTGAATAATCATTCGCCTT+AGG | + | chr8_1:52320075-52320094 | None:intergenic | 30.0% | |
| GTGAAATCACAACAAAGATA+TGG | + | chr8_1:52320155-52320174 | None:intergenic | 30.0% | |
| ! | TTTGATTTCGTTATTGATGC+AGG | - | chr8_1:52320345-52320364 | Msa1200030:CDS | 30.0% |
| TTGTATATACCTCAATTCAG+AGG | + | chr8_1:52320410-52320429 | None:intergenic | 30.0% | |
| TGTCAATCAATCACAATTGT+TGG | - | chr8_1:52320441-52320460 | Msa1200030:CDS | 30.0% | |
| ! | ATTTGGTACTCTTTATTTGC+AGG | - | chr8_1:52320602-52320621 | Msa1200030:intron | 30.0% |
| AATAGAATCTGTTCACATGT+TGG | - | chr8_1:52320666-52320685 | Msa1200030:intron | 30.0% | |
| !! | TATTTCCTCCAAACTAGTTT+TGG | - | chr8_1:52320952-52320971 | Msa1200030:intron | 30.0% |
| CAAAATCCAATATATGTCGA+AGG | - | chr8_1:52321000-52321019 | Msa1200030:intron | 30.0% | |
| ! | AGACTCTACTATTCAAGTTA+AGG | - | chr8_1:52321023-52321042 | Msa1200030:intron | 30.0% |
| ATCCATAAACCTAATTGACT+TGG | - | chr8_1:52321074-52321093 | Msa1200030:CDS | 30.0% | |
| ATCCAAGTCAATTAGGTTTA+TGG | + | chr8_1:52321079-52321098 | None:intergenic | 30.0% | |
| !! | ATAAACCTAATTGACTTGGA+TGG | - | chr8_1:52321078-52321097 | Msa1200030:CDS | 30.0% |
| !!! | TTTTGTTTTTGTGGAACTAC+AGG | - | chr8_1:52321345-52321364 | Msa1200030:intron | 30.0% |
| TTATCTGAAAGATGATAGAG+AGG | - | chr8_1:52321389-52321408 | Msa1200030:intron | 30.0% | |
| ! | ATTAATTCACTGGTTAGTGA+TGG | + | chr8_1:52321624-52321643 | None:intergenic | 30.0% |
| AATTAATTATGCAGAGGAGA+AGG | - | chr8_1:52321637-52321656 | Msa1200030:intron | 30.0% | |
| AACCTTATTGTAATGCAGAA+TGG | - | chr8_1:52321771-52321790 | Msa1200030:intron | 30.0% | |
| ! | AATCCTCATTTTGCTTATGA+AGG | + | chr8_1:52321954-52321973 | None:intergenic | 30.0% |
| TGAGGATTTGATTGATGAAA+AGG | - | chr8_1:52321966-52321985 | Msa1200030:CDS | 30.0% | |
| ! | ACATTGATGGATAACCCTAT+TGG | - | chr8_1:52319204-52319223 | Msa1200030:CDS | 35.0% |
| !! | TTGGTATTGGTACTCCAATA+GGG | + | chr8_1:52319221-52319240 | None:intergenic | 35.0% |
| GGATACAATTCATCAAGCAA+AGG | - | chr8_1:52319475-52319494 | Msa1200030:intron | 35.0% | |
| TTCATAGTAGACTATCACAG+AGG | - | chr8_1:52319500-52319519 | Msa1200030:CDS | 35.0% | |
| !! | CTGAAAAATAGCTTTGGCAA+TGG | + | chr8_1:52319691-52319710 | None:intergenic | 35.0% |
| ATTGATCCTTTGCCATTCAA+TGG | - | chr8_1:52319804-52319823 | Msa1200030:intron | 35.0% | |
| !! | AATGGTTCTAGATGGGTAAT+TGG | - | chr8_1:52319822-52319841 | Msa1200030:intron | 35.0% |
| AATTATGCAAGACGATCCTA+AGG | - | chr8_1:52320056-52320075 | Msa1200030:CDS | 35.0% | |
| !! | TCCTTTAGGGTAATTGTAGT+AGG | - | chr8_1:52320110-52320129 | Msa1200030:CDS | 35.0% |
| !! | CCTTTAGGGTAATTGTAGTA+GGG | - | chr8_1:52320111-52320130 | Msa1200030:CDS | 35.0% |
| CAACAAAGATATGGTATAGC+AGG | + | chr8_1:52320146-52320165 | None:intergenic | 35.0% | |
| GATTGTTGAACTTCATCAAC+AGG | + | chr8_1:52320240-52320259 | None:intergenic | 35.0% | |
| !! | TAGTAACTTGTTTCTTGCCA+AGG | - | chr8_1:52320260-52320279 | Msa1200030:CDS | 35.0% |
| AGTTTGATGTAAGCAAACCT+TGG | + | chr8_1:52320280-52320299 | None:intergenic | 35.0% | |
| ! | TACTCTTTATTTGCAGGCAA+AGG | - | chr8_1:52320608-52320627 | Msa1200030:intron | 35.0% |
| ATTGTTATCACCATTCTGAG+TGG | + | chr8_1:52320692-52320711 | None:intergenic | 35.0% | |
| !! | TGAATGCACCCTTTTGATTA+AGG | + | chr8_1:52320750-52320769 | None:intergenic | 35.0% |
| ATTGACGAAGACGAATTTGA+TGG | + | chr8_1:52320778-52320797 | None:intergenic | 35.0% | |
| TGGAGGAAATAATCTTCTTG+AGG | + | chr8_1:52320943-52320962 | None:intergenic | 35.0% | |
| !!! | TCCAAACTAGTTTTGGTGAA+GGG | - | chr8_1:52320959-52320978 | Msa1200030:intron | 35.0% |
| TTGGTGAAGGGAATGAAAAT+TGG | - | chr8_1:52320971-52320990 | Msa1200030:intron | 35.0% | |
| CTAAACCATCCAAGTCAATT+AGG | + | chr8_1:52321086-52321105 | None:intergenic | 35.0% | |
| GAAGCTGAGCTCAAATATAT+TGG | + | chr8_1:52321123-52321142 | None:intergenic | 35.0% | |
| GAAAGCTCATGGAATAAAGT+TGG | - | chr8_1:52321231-52321250 | Msa1200030:intron | 35.0% | |
| AGTTTGGAAAATAGAGTCAG+AGG | - | chr8_1:52321264-52321283 | Msa1200030:intron | 35.0% | |
| ! | TTTTGTGGAACTACAGGTTT+CGG | - | chr8_1:52321351-52321370 | Msa1200030:intron | 35.0% |
| ! | TCTGTAACATCAGCTATTTC+AGG | - | chr8_1:52321541-52321560 | Msa1200030:intron | 35.0% |
| CCTCTGCATAATTAATTCAC+TGG | + | chr8_1:52321634-52321653 | None:intergenic | 35.0% | |
| CCAGTGAATTAATTATGCAG+AGG | - | chr8_1:52321631-52321650 | Msa1200030:intron | 35.0% | |
| AGAATGCCACAAAAAAACGT+AGG | - | chr8_1:52321660-52321679 | Msa1200030:intron | 35.0% | |
| GAATGCCACAAAAAAACGTA+GGG | - | chr8_1:52321661-52321680 | Msa1200030:intron | 35.0% | |
| AGCCATTCTGCATTACAATA+AGG | + | chr8_1:52321776-52321795 | None:intergenic | 35.0% | |
| TTTATCCTTCATGAACAGGA+AGG | - | chr8_1:52321900-52321919 | Msa1200030:CDS | 35.0% | |
| TGAACAAACAAAGCAGATAG+AGG | - | chr8_1:52321927-52321946 | Msa1200030:CDS | 35.0% | |
| TTGTTTCAATCTCTTCCAGA+AGG | + | chr8_1:52321996-52322015 | None:intergenic | 35.0% | |
| !! | GTTGGTATTGGTACTCCAAT+AGG | + | chr8_1:52319222-52319241 | None:intergenic | 40.0% |
| TGAGAAACAGCCTTGAAACT+CGG | + | chr8_1:52319255-52319274 | None:intergenic | 40.0% | |
| !! | AAGCTTTAGAACAGACAGTG+AGG | - | chr8_1:52319275-52319294 | Msa1200030:CDS | 40.0% |
| GTGAGGAACTCTTCAAAAAG+TGG | - | chr8_1:52319292-52319311 | Msa1200030:CDS | 40.0% | |
| ACGCTATCCTAGAGAGTTTA+TGG | - | chr8_1:52319641-52319660 | Msa1200030:CDS | 40.0% | |
| AAATTGAAACAGGCCTACGA+AGG | - | chr8_1:52319766-52319785 | Msa1200030:intron | 40.0% | |
| CTAGAACCATTGAATGGCAA+AGG | + | chr8_1:52319813-52319832 | None:intergenic | 40.0% | |
| !! | TGCCATTCAATGGTTCTAGA+TGG | - | chr8_1:52319814-52319833 | Msa1200030:intron | 40.0% |
| !! | GCCATTCAATGGTTCTAGAT+GGG | - | chr8_1:52319815-52319834 | Msa1200030:intron | 40.0% |
| ! | ACCCATCTAGAACCATTGAA+TGG | + | chr8_1:52319819-52319838 | None:intergenic | 40.0% |
| ! | ATGGGTAATTGGTTCAAGAG+TGG | - | chr8_1:52319833-52319852 | Msa1200030:intron | 40.0% |
| GTCTTGCATAATTCTTCCCT+CGG | + | chr8_1:52320049-52320068 | None:intergenic | 40.0% | |
| CCCTACTACAATTACCCTAA+AGG | + | chr8_1:52320114-52320133 | None:intergenic | 40.0% | |
| AACTTCATCAACAGGTTCTC+TGG | + | chr8_1:52320232-52320251 | None:intergenic | 40.0% | |
| ! | CTTTGCTGAATCTGAAGCAT+TGG | - | chr8_1:52320300-52320319 | Msa1200030:intron | 40.0% |
| TTTCGTTATTGATGCAGGCT+TGG | - | chr8_1:52320350-52320369 | Msa1200030:CDS | 40.0% | |
| ! | CTTCACCAAAACTAGTTTGG+AGG | + | chr8_1:52320960-52320979 | None:intergenic | 40.0% |
| !!! | CTCCAAACTAGTTTTGGTGA+AGG | - | chr8_1:52320958-52320977 | Msa1200030:intron | 40.0% |
| TCCCTTCACCAAAACTAGTT+TGG | + | chr8_1:52320963-52320982 | None:intergenic | 40.0% | |
| GAGTCTCCTTCGACATATAT+TGG | + | chr8_1:52321009-52321028 | None:intergenic | 40.0% | |
| GCAGCAATAGAAGATTCACT+TGG | + | chr8_1:52321147-52321166 | None:intergenic | 40.0% | |
| !! | TTAGTCTCTACTGGTTTCGA+TGG | - | chr8_1:52321171-52321190 | Msa1200030:CDS | 40.0% |
| ATGAGCTTTCACAAAGAGTC+TGG | + | chr8_1:52321221-52321240 | None:intergenic | 40.0% | |
| AGACTCTTTGTGAAAGCTCA+TGG | - | chr8_1:52321220-52321239 | Msa1200030:intron | 40.0% | |
| AGCTCATGGAATAAAGTTGG+AGG | - | chr8_1:52321234-52321253 | Msa1200030:intron | 40.0% | |
| ! | AGTTGGAGGAAGTACAAGTT+TGG | - | chr8_1:52321248-52321267 | Msa1200030:intron | 40.0% |
| ATTGTAATGCAGAATGGCTG+AGG | - | chr8_1:52321777-52321796 | Msa1200030:intron | 40.0% | |
| TCAAGACAGCTTGCATATCA+GGG | + | chr8_1:52321834-52321853 | None:intergenic | 40.0% | |
| TTCAAGACAGCTTGCATATC+AGG | + | chr8_1:52321835-52321854 | None:intergenic | 40.0% | |
| AGAATCCTTCCTGTTCATGA+AGG | + | chr8_1:52321908-52321927 | None:intergenic | 40.0% | |
| GGACCTTCATAAGCAAAATG+AGG | - | chr8_1:52321948-52321967 | Msa1200030:CDS | 40.0% | |
| ! | TGGAGTACCAATACCAACCA+TGG | - | chr8_1:52319224-52319243 | Msa1200030:CDS | 45.0% |
| !! | GTTTTAGCACCAACCTTCGT+AGG | + | chr8_1:52319782-52319801 | None:intergenic | 45.0% |
| GAAGTCGATCCTCTGAATTG+AGG | - | chr8_1:52320398-52320417 | Msa1200030:CDS | 45.0% | |
| !! | CTTGTGCTACTTGAGCATTG+TGG | + | chr8_1:52320645-52320664 | None:intergenic | 45.0% |
| CACAATGCTCAAGTAGCACA+AGG | - | chr8_1:52320643-52320662 | Msa1200030:intron | 45.0% | |
| AGCAGCCAAATAGCGAAACA+AGG | - | chr8_1:52320886-52320905 | Msa1200030:intron | 45.0% | |
| ! | GCTGCAACATTAGTCTCTAC+TGG | - | chr8_1:52321162-52321181 | Msa1200030:CDS | 45.0% |
| ! | AGAGTCTGGCTTGATATGCA+TGG | + | chr8_1:52321207-52321226 | None:intergenic | 45.0% |
| TGCCACAAAAAAACGTAGGG+TGG | - | chr8_1:52321664-52321683 | Msa1200030:intron | 45.0% | |
| !!! | CTCCACCCTACGTTTTTTTG+TGG | + | chr8_1:52321669-52321688 | None:intergenic | 45.0% |
| AAGACAGCTTGCATATCAGG+GGG | + | chr8_1:52321832-52321851 | None:intergenic | 45.0% | |
| CAAGACAGCTTGCATATCAG+GGG | + | chr8_1:52321833-52321852 | None:intergenic | 45.0% | |
| ATGATCGAACTTCCTTCTCG+AGG | + | chr8_1:52321870-52321889 | None:intergenic | 45.0% | |
| TGATGAAAAGGAACGCCTTC+TGG | - | chr8_1:52321978-52321997 | Msa1200030:CDS | 45.0% | |
| ! | GGCATGTCCATGGTTGGTAT+TGG | + | chr8_1:52319234-52319253 | None:intergenic | 50.0% |
| AAACTCGGCATGTCCATGGT+TGG | + | chr8_1:52319240-52319259 | None:intergenic | 50.0% | |
| CTTGAAACTCGGCATGTCCA+TGG | + | chr8_1:52319244-52319263 | None:intergenic | 50.0% | |
| CATGGACATGCCGAGTTTCA+AGG | - | chr8_1:52319242-52319261 | Msa1200030:CDS | 50.0% | |
| TGAAACAGGCCTACGAAGGT+TGG | - | chr8_1:52319770-52319789 | Msa1200030:intron | 50.0% | |
| CACATGTTGGCCACTCAGAA+TGG | - | chr8_1:52320679-52320698 | Msa1200030:intron | 50.0% | |
| !! | CCACGCCTTGTTTCGCTATT+TGG | + | chr8_1:52320894-52320913 | None:intergenic | 50.0% |
| CCAAATAGCGAAACAAGGCG+TGG | - | chr8_1:52320891-52320910 | Msa1200030:intron | 50.0% | |
| ! | ACTGGTTTCGATGGATGCGA+CGG | - | chr8_1:52321180-52321199 | Msa1200030:CDS | 50.0% |
| ATGCAGAATGGCTGAGGCAA+AGG | - | chr8_1:52321783-52321802 | Msa1200030:intron | 50.0% | |
| GAATGGCTGAGGCAAAGGAA+AGG | - | chr8_1:52321788-52321807 | Msa1200030:intron | 50.0% | |
| TGCATATCAGGGGGAATGGA+TGG | + | chr8_1:52321823-52321842 | None:intergenic | 50.0% | |
| AGCTTGCATATCAGGGGGAA+TGG | + | chr8_1:52321827-52321846 | None:intergenic | 50.0% | |
| GCGATGCGAAGACCTCGAGA+AGG | - | chr8_1:52321855-52321874 | Msa1200030:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 52319144 | 52322041 | 52319144 | ID=Msa1200030;Name=Msa1200030 |
| chr8_1 | mRNA | 52319144 | 52322041 | 52319144 | ID=Msa1200030-mRNA-1;Parent=Msa1200030;Name=Msa1200030-mRNA-1;_AED=0.08;_eAED=0.21;_QI=0|0.11|0|1|0.55|0.4|10|0|468 |
| chr8_1 | exon | 52321852 | 52322041 | 52321852 | ID=Msa1200030-mRNA-1:exon:16740;Parent=Msa1200030-mRNA-1 |
| chr8_1 | exon | 52321067 | 52321232 | 52321067 | ID=Msa1200030-mRNA-1:exon:16739;Parent=Msa1200030-mRNA-1 |
| chr8_1 | exon | 52320917 | 52320952 | 52320917 | ID=Msa1200030-mRNA-1:exon:16738;Parent=Msa1200030-mRNA-1 |
| chr8_1 | exon | 52320339 | 52320561 | 52320339 | ID=Msa1200030-mRNA-1:exon:16737;Parent=Msa1200030-mRNA-1 |
| chr8_1 | exon | 52320086 | 52320305 | 52320086 | ID=Msa1200030-mRNA-1:exon:16736;Parent=Msa1200030-mRNA-1 |
| chr8_1 | exon | 52319900 | 52320079 | 52319900 | ID=Msa1200030-mRNA-1:exon:16735;Parent=Msa1200030-mRNA-1 |
| chr8_1 | exon | 52319775 | 52319818 | 52319775 | ID=Msa1200030-mRNA-1:exon:16734;Parent=Msa1200030-mRNA-1 |
| chr8_1 | exon | 52319623 | 52319668 | 52319623 | ID=Msa1200030-mRNA-1:exon:16733;Parent=Msa1200030-mRNA-1 |
| chr8_1 | exon | 52319486 | 52319534 | 52319486 | ID=Msa1200030-mRNA-1:exon:16732;Parent=Msa1200030-mRNA-1 |
| chr8_1 | exon | 52319144 | 52319396 | 52319144 | ID=Msa1200030-mRNA-1:exon:16731;Parent=Msa1200030-mRNA-1 |
| chr8_1 | CDS | 52321852 | 52322041 | 52321852 | ID=Msa1200030-mRNA-1:cds;Parent=Msa1200030-mRNA-1 |
| chr8_1 | CDS | 52321067 | 52321232 | 52321067 | ID=Msa1200030-mRNA-1:cds;Parent=Msa1200030-mRNA-1 |
| chr8_1 | CDS | 52320917 | 52320952 | 52320917 | ID=Msa1200030-mRNA-1:cds;Parent=Msa1200030-mRNA-1 |
| chr8_1 | CDS | 52320339 | 52320561 | 52320339 | ID=Msa1200030-mRNA-1:cds;Parent=Msa1200030-mRNA-1 |
| chr8_1 | CDS | 52320086 | 52320305 | 52320086 | ID=Msa1200030-mRNA-1:cds;Parent=Msa1200030-mRNA-1 |
| chr8_1 | CDS | 52319900 | 52320079 | 52319900 | ID=Msa1200030-mRNA-1:cds;Parent=Msa1200030-mRNA-1 |
| chr8_1 | CDS | 52319775 | 52319818 | 52319775 | ID=Msa1200030-mRNA-1:cds;Parent=Msa1200030-mRNA-1 |
| chr8_1 | CDS | 52319623 | 52319668 | 52319623 | ID=Msa1200030-mRNA-1:cds;Parent=Msa1200030-mRNA-1 |
| chr8_1 | CDS | 52319486 | 52319534 | 52319486 | ID=Msa1200030-mRNA-1:cds;Parent=Msa1200030-mRNA-1 |
| chr8_1 | CDS | 52319144 | 52319396 | 52319144 | ID=Msa1200030-mRNA-1:cds;Parent=Msa1200030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
