Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1279840 | XP_013445577.1 | 96.045 | 177 | 6 | 1 | 9 | 184 | 1 | 177 | 3.36e-116 | 349 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1279840 | sp|Q7XQT2|DGK1_ORYSJ | 69.048 | 168 | 51 | 1 | 18 | 184 | 19 | 186 | 1.94e-74 | 235 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1279840 | A0A072TRX3 | 96.045 | 177 | 6 | 1 | 9 | 184 | 1 | 177 | 1.61e-116 | 349 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0709120 | Msa1279840 | 0.807380 | 5.199992e-50 | -8.615850e-47 |
| Msa0139670 | Msa1279840 | 0.807617 | 4.630291e-50 | -8.615850e-47 |
| Msa1279840 | Msa1288010 | 0.896788 | 2.635208e-76 | -8.615850e-47 |
| Msa1184780 | Msa1279840 | 0.809447 | 1.883511e-50 | -8.615850e-47 |
| Msa0521010 | Msa1279840 | 0.800984 | 1.115007e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1279840 | MtrunA17_Chr8g0360931 | 96.045 | 177 | 6 | 1 | 9 | 184 | 1 | 177 | 3.09e-120 | 349 |
| Msa1279840 | MtrunA17_Chr4g0022651 | 65.116 | 172 | 55 | 2 | 18 | 184 | 6 | 177 | 1.75e-71 | 224 |
| Msa1279840 | MtrunA17_Chr2g0323521 | 65.882 | 170 | 55 | 2 | 18 | 184 | 9 | 178 | 8.33e-68 | 214 |
| Msa1279840 | MtrunA17_Chr4g0072941 | 36.486 | 148 | 90 | 3 | 41 | 184 | 82 | 229 | 1.81e-22 | 94.0 |
| Msa1279840 | MtrunA17_Chr2g0305591 | 40.800 | 125 | 70 | 3 | 41 | 161 | 90 | 214 | 2.12e-21 | 90.9 |
| Msa1279840 | MtrunA17_Chr8g0384961 | 33.103 | 145 | 82 | 2 | 42 | 185 | 331 | 461 | 3.70e-16 | 76.3 |
| Msa1279840 | MtrunA17_Chr4g0061331 | 32.911 | 158 | 85 | 6 | 33 | 185 | 346 | 487 | 3.01e-15 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1279840 | AT4G28130.1 | 64.327 | 171 | 55 | 3 | 18 | 184 | 18 | 186 | 5.03e-66 | 210 |
| Msa1279840 | AT2G20900.3 | 66.082 | 171 | 52 | 3 | 18 | 184 | 11 | 179 | 2.93e-65 | 209 |
| Msa1279840 | AT2G20900.2 | 66.082 | 171 | 52 | 3 | 18 | 184 | 11 | 179 | 2.93e-65 | 209 |
| Msa1279840 | AT2G20900.4 | 66.082 | 171 | 52 | 3 | 18 | 184 | 11 | 179 | 4.31e-65 | 209 |
| Msa1279840 | AT2G20900.1 | 66.082 | 171 | 52 | 3 | 18 | 184 | 11 | 179 | 4.31e-65 | 209 |
| Msa1279840 | AT2G18730.1 | 35.795 | 176 | 107 | 3 | 13 | 184 | 62 | 235 | 3.13e-26 | 105 |
| Msa1279840 | AT5G57690.1 | 35.849 | 159 | 96 | 3 | 30 | 184 | 78 | 234 | 3.86e-25 | 102 |
| Msa1279840 | AT4G30340.2 | 37.255 | 153 | 90 | 3 | 13 | 161 | 65 | 215 | 1.18e-24 | 99.8 |
| Msa1279840 | AT4G30340.1 | 37.255 | 153 | 90 | 3 | 13 | 161 | 65 | 215 | 4.93e-24 | 99.0 |
| Msa1279840 | AT5G63770.1 | 34.932 | 146 | 78 | 3 | 42 | 185 | 340 | 470 | 3.33e-18 | 82.4 |
| Msa1279840 | AT5G63770.2 | 34.932 | 146 | 78 | 3 | 42 | 185 | 340 | 470 | 3.33e-18 | 82.4 |
| Msa1279840 | AT5G07920.2 | 29.944 | 177 | 103 | 6 | 14 | 185 | 329 | 489 | 6.10e-12 | 64.3 |
| Msa1279840 | AT5G07920.3 | 29.944 | 177 | 103 | 6 | 14 | 185 | 329 | 489 | 6.17e-12 | 64.3 |
| Msa1279840 | AT5G07920.1 | 29.944 | 177 | 103 | 6 | 14 | 185 | 329 | 489 | 6.17e-12 | 64.3 |
Find 53 sgRNAs with CRISPR-Local
Find 290 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATCAACTTTATGCTAATT+TGG | 0.109692 | 8_3:-17463481 | Msa1279840:CDS |
| AGTTGATGCAGCACCTTATC+TGG | 0.277445 | 8_3:+17463495 | None:intergenic |
| ACCAAGCTGACCACCACTTT+TGG | 0.279509 | 8_3:+17464256 | None:intergenic |
| AATAATCTCCCCTTTGCATT+TGG | 0.342561 | 8_3:-17463192 | Msa1279840:CDS |
| TTGATTAAGAAGTGAACTAT+AGG | 0.353118 | 8_3:+17464217 | None:intergenic |
| TTCACTTCTTAATCAAAATC+AGG | 0.360736 | 8_3:-17464210 | Msa1279840:intron |
| GGTACTGCTAGCTGGCTTCT+TGG | 0.373916 | 8_3:-17463279 | Msa1279840:CDS |
| ACCGGATTATATACTATTGC+CGG | 0.405438 | 8_3:-17464339 | Msa1279840:CDS |
| ACACCTCTGTTCTCAGTTCC+CGG | 0.410460 | 8_3:+17464320 | None:intergenic |
| ATCTCCCCTTTGCATTTGGA+TGG | 0.434230 | 8_3:-17463188 | Msa1279840:CDS |
| TCCAACGTCTAATTTGTTAG+TGG | 0.449636 | 8_3:-17462602 | None:intergenic |
| CCGAGTGGCACTGTTGCAAT+TGG | 0.452174 | 8_3:+17463222 | None:intergenic |
| GTGGAGATGGTACTGCTAGC+TGG | 0.454788 | 8_3:-17463287 | Msa1279840:CDS |
| TCCAAAAGTGGTGGTCAGCT+TGG | 0.464308 | 8_3:-17464257 | Msa1279840:CDS |
| GTCCACGGTCTTCTAACAAA+TGG | 0.467795 | 8_3:-17462629 | Msa1279840:CDS |
| ATCTAGGTTGCAGGTGGAGA+TGG | 0.472246 | 8_3:-17463300 | Msa1279840:intron |
| GTTGCAATTGGCGGCGGATG+AGG | 0.478880 | 8_3:+17463234 | None:intergenic |
| ATGCTGCTGAAATTCAGAAT+AGG | 0.485460 | 8_3:-17463431 | Msa1279840:CDS |
| ATTGAAGGAATTTACGATAC+CGG | 0.493744 | 8_3:-17464357 | Msa1279840:CDS |
| TCAGAAATGATGCCACTGAT+TGG | 0.497126 | 8_3:+17462808 | None:intergenic |
| CCCGGCAATAGTATATAATC+CGG | 0.512703 | 8_3:+17464338 | None:intergenic |
| TGTACCCATCCAAATGCAAA+GGG | 0.513071 | 8_3:+17463183 | None:intergenic |
| TGCTAGCTGGCTTCTTGGAG+TGG | 0.516778 | 8_3:-17463274 | Msa1279840:CDS |
| GCAACAGTGCCACTCGGGAC+AGG | 0.517878 | 8_3:-17463216 | Msa1279840:CDS |
| AAAAGTGGTGGTCAGCTTGG+TGG | 0.520521 | 8_3:-17464254 | Msa1279840:CDS |
| AGTGGCACTGTTGCAATTGG+CGG | 0.521982 | 8_3:+17463225 | None:intergenic |
| AAATAGCATAAGAACATTGA+AGG | 0.526639 | 8_3:-17464372 | Msa1279840:CDS |
| CAAAGGAAATGAAAATAGAC+AGG | 0.530610 | 8_3:-17462770 | Msa1279840:intron |
| GGCACTGTTGCAATTGGCGG+CGG | 0.532979 | 8_3:+17463228 | None:intergenic |
| CCGGATTATATACTATTGCC+GGG | 0.533158 | 8_3:-17464338 | Msa1279840:CDS |
| GTCGATTTGTTAGGGGTCCA+CGG | 0.534206 | 8_3:-17462644 | Msa1279840:intron |
| CCAATTGCAACAGTGCCACT+CGG | 0.537514 | 8_3:-17463222 | Msa1279840:CDS |
| AAGATAATAACAATGGGTGA+TGG | 0.538932 | 8_3:-17464395 | Msa1279840:CDS |
| TCTCCCCTTTGCATTTGGAT+GGG | 0.539959 | 8_3:-17463187 | Msa1279840:intron |
| TTCATTAACTCCAAAAGTGG+TGG | 0.545876 | 8_3:-17464266 | Msa1279840:CDS |
| GGGAGTACATGCTCCAGATA+AGG | 0.551210 | 8_3:-17463508 | Msa1279840:CDS |
| CTAACAAATTAGACGTTGGA+TGG | 0.558009 | 8_3:+17462605 | None:intergenic |
| GAATCATGTAAAAGCTGCAA+AGG | 0.562872 | 8_3:-17462787 | Msa1279840:CDS |
| CAATTGCAACAGTGCCACTC+GGG | 0.576226 | 8_3:-17463221 | Msa1279840:CDS |
| GAGTTAATGAAAACAACGAC+AGG | 0.578246 | 8_3:+17464278 | None:intergenic |
| ATGTACCCATCCAAATGCAA+AGG | 0.584441 | 8_3:+17463182 | None:intergenic |
| AAAACAACGACAGGACATGC+AGG | 0.596525 | 8_3:+17464287 | None:intergenic |
| AGTTTGAAGATAATAACAAT+GGG | 0.611523 | 8_3:-17464401 | Msa1279840:CDS |
| ACTGATTGGATGTCTGTGGT+AGG | 0.630568 | 8_3:+17462822 | None:intergenic |
| TTGGAAAAGCTAAAACACAA+TGG | 0.632887 | 8_3:-17463462 | Msa1279840:CDS |
| AGATTATTTCCTGTCCCGAG+TGG | 0.642986 | 8_3:+17463207 | None:intergenic |
| GCCACTAACAAATTAGACGT+TGG | 0.644154 | 8_3:+17462601 | None:intergenic |
| GTCCATTTGTTAGAAGACCG+TGG | 0.646000 | 8_3:+17462627 | None:intergenic |
| CAGTTTGAAGATAATAACAA+TGG | 0.654088 | 8_3:-17464402 | Msa1279840:CDS |
| TACCACAGACATCCAATCAG+TGG | 0.671367 | 8_3:-17462820 | Msa1279840:CDS |
| TGCCACTGATTGGATGTCTG+TGG | 0.704410 | 8_3:+17462818 | None:intergenic |
| TTGCCGGGAACTGAGAACAG+AGG | 0.740768 | 8_3:-17464323 | Msa1279840:CDS |
| GTACCCATCCAAATGCAAAG+GGG | 0.755325 | 8_3:+17463184 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATAATTCAAATTAAAATT+TGG | + | chr8_3:17464009-17464028 | None:intergenic | 10.0% |
| !! | TCATAATTCAAATTAAAATT+TGG | + | chr8_3:17464009-17464028 | None:intergenic | 10.0% |
| !! | TAATCAATGTTGTTAAATAT+CGG | - | chr8_3:17462956-17462975 | Msa1279840:intron | 15.0% |
| !!! | TTTTTTAATTTGATTTTACC+AGG | - | chr8_3:17463471-17463490 | Msa1279840:CDS | 15.0% |
| !! | AATTTGAATTATGAATTACA+AGG | - | chr8_3:17464015-17464034 | Msa1279840:intron | 15.0% |
| !! | TTCAAAATTAAGAAAAATGA+TGG | + | chr8_3:17464273-17464292 | None:intergenic | 15.0% |
| !! | TAATCAATGTTGTTAAATAT+CGG | - | chr8_3:17462956-17462975 | Msa1279840:intron | 15.0% |
| !!! | TTTTTTAATTTGATTTTACC+AGG | - | chr8_3:17463471-17463490 | Msa1279840:CDS | 15.0% |
| !! | AATTTGAATTATGAATTACA+AGG | - | chr8_3:17464015-17464034 | Msa1279840:intron | 15.0% |
| !! | TTCAAAATTAAGAAAAATGA+TGG | + | chr8_3:17464273-17464292 | None:intergenic | 15.0% |
| !! | AGTTTGAAGATAATAACAAT+GGG | - | chr8_3:17462611-17462630 | Msa1279840:CDS | 20.0% |
| !!! | AAATAAAGCATTTGCATATA+TGG | + | chr8_3:17463670-17463689 | None:intergenic | 20.0% |
| !! | TAAAAATGCAAACAAAATGA+TGG | + | chr8_3:17463959-17463978 | None:intergenic | 20.0% |
| !! | ATAAGATTTATTTCATTCAC+AGG | - | chr8_3:17464156-17464175 | Msa1279840:intron | 20.0% |
| !! | TAAGATTTATTTCATTCACA+GGG | - | chr8_3:17464157-17464176 | Msa1279840:intron | 20.0% |
| !! | ATAATATAAAATTTGCACTG+CGG | - | chr8_3:17464346-17464365 | Msa1279840:CDS | 20.0% |
| !! | AGTTTGAAGATAATAACAAT+GGG | - | chr8_3:17462611-17462630 | Msa1279840:CDS | 20.0% |
| !!! | AAATAAAGCATTTGCATATA+TGG | + | chr8_3:17463670-17463689 | None:intergenic | 20.0% |
| !! | TAAAAATGCAAACAAAATGA+TGG | + | chr8_3:17463959-17463978 | None:intergenic | 20.0% |
| !! | ATAAGATTTATTTCATTCAC+AGG | - | chr8_3:17464156-17464175 | Msa1279840:intron | 20.0% |
| !! | TAAGATTTATTTCATTCACA+GGG | - | chr8_3:17464157-17464176 | Msa1279840:intron | 20.0% |
| !! | ATAATATAAAATTTGCACTG+CGG | - | chr8_3:17464346-17464365 | Msa1279840:CDS | 20.0% |
| ! | CAGTTTGAAGATAATAACAA+TGG | - | chr8_3:17462610-17462629 | Msa1279840:CDS | 25.0% |
| ! | AAATAGCATAAGAACATTGA+AGG | - | chr8_3:17462640-17462659 | Msa1279840:intron | 25.0% |
| ! | TTGATTAAGAAGTGAACTAT+AGG | + | chr8_3:17462798-17462817 | None:intergenic | 25.0% |
| ! | TTCACTTCTTAATCAAAATC+AGG | - | chr8_3:17462802-17462821 | Msa1279840:CDS | 25.0% |
| ! | TCTTAATCAAAATCAGGTAA+AGG | - | chr8_3:17462808-17462827 | Msa1279840:CDS | 25.0% |
| !!! | TTTTTTTTTTTTTGCGATCG+CGG | - | chr8_3:17462851-17462870 | Msa1279840:intron | 25.0% |
| ! | TGACTGTAATGTTAGAATTT+GGG | - | chr8_3:17462926-17462945 | Msa1279840:intron | 25.0% |
| !! | ATTAAGTCCAATTTTATCGA+TGG | + | chr8_3:17463088-17463107 | None:intergenic | 25.0% |
| ! | GTATACAACCGTAATATAAA+AGG | - | chr8_3:17463189-17463208 | Msa1279840:CDS | 25.0% |
| !! | CCTCAAAACCTTTTATATTA+CGG | + | chr8_3:17463200-17463219 | None:intergenic | 25.0% |
| !! | TATACATGTTTTCAGCATAA+CGG | - | chr8_3:17463278-17463297 | Msa1279840:CDS | 25.0% |
| !! | TAATATGTTGCTTGAAATCT+AGG | - | chr8_3:17463696-17463715 | Msa1279840:intron | 25.0% |
| !! | TTTGTCTTGTTATGATCATT+TGG | - | chr8_3:17463928-17463947 | Msa1279840:intron | 25.0% |
| ! | TAAAACCTTAAATGTGATCA+TGG | + | chr8_3:17464097-17464116 | None:intergenic | 25.0% |
| !!! | CATGATTCTTGTTTACATTT+TGG | + | chr8_3:17464322-17464341 | None:intergenic | 25.0% |
| ! | CAGTTTGAAGATAATAACAA+TGG | - | chr8_3:17462610-17462629 | Msa1279840:CDS | 25.0% |
| ! | AAATAGCATAAGAACATTGA+AGG | - | chr8_3:17462640-17462659 | Msa1279840:intron | 25.0% |
| ! | TTGATTAAGAAGTGAACTAT+AGG | + | chr8_3:17462798-17462817 | None:intergenic | 25.0% |
| ! | TTCACTTCTTAATCAAAATC+AGG | - | chr8_3:17462802-17462821 | Msa1279840:CDS | 25.0% |
| ! | TCTTAATCAAAATCAGGTAA+AGG | - | chr8_3:17462808-17462827 | Msa1279840:CDS | 25.0% |
| !!! | TTTTTTTTTTTTTGCGATCG+CGG | - | chr8_3:17462851-17462870 | Msa1279840:intron | 25.0% |
| ! | TGACTGTAATGTTAGAATTT+GGG | - | chr8_3:17462926-17462945 | Msa1279840:intron | 25.0% |
| !! | ATTAAGTCCAATTTTATCGA+TGG | + | chr8_3:17463088-17463107 | None:intergenic | 25.0% |
| ! | GTATACAACCGTAATATAAA+AGG | - | chr8_3:17463189-17463208 | Msa1279840:CDS | 25.0% |
| !! | CCTCAAAACCTTTTATATTA+CGG | + | chr8_3:17463200-17463219 | None:intergenic | 25.0% |
| !! | TATACATGTTTTCAGCATAA+CGG | - | chr8_3:17463278-17463297 | Msa1279840:CDS | 25.0% |
| !! | TAATATGTTGCTTGAAATCT+AGG | - | chr8_3:17463696-17463715 | Msa1279840:intron | 25.0% |
| !! | TTTGTCTTGTTATGATCATT+TGG | - | chr8_3:17463928-17463947 | Msa1279840:intron | 25.0% |
| ! | TAAAACCTTAAATGTGATCA+TGG | + | chr8_3:17464097-17464116 | None:intergenic | 25.0% |
| !!! | CATGATTCTTGTTTACATTT+TGG | + | chr8_3:17464322-17464341 | None:intergenic | 25.0% |
| AAGATAATAACAATGGGTGA+TGG | - | chr8_3:17462617-17462636 | Msa1279840:CDS | 30.0% | |
| ATTGAAGGAATTTACGATAC+CGG | - | chr8_3:17462655-17462674 | Msa1279840:intron | 30.0% | |
| ! | GTTTTCATTAACTCCAAAAG+TGG | - | chr8_3:17462743-17462762 | Msa1279840:intron | 30.0% |
| GTGACTGTAATGTTAGAATT+TGG | - | chr8_3:17462925-17462944 | Msa1279840:intron | 30.0% | |
| CTAAAAATGTGTTTATACCC+GGG | + | chr8_3:17463145-17463164 | None:intergenic | 30.0% | |
| CCTAAAAATGTGTTTATACC+CGG | + | chr8_3:17463146-17463165 | None:intergenic | 30.0% | |
| !!! | TATGTCATGGTTTTGAATTG+CGG | - | chr8_3:17463167-17463186 | Msa1279840:intron | 30.0% |
| ! | CCGTAATATAAAAGGTTTTG+AGG | - | chr8_3:17463197-17463216 | Msa1279840:CDS | 30.0% |
| TGTATAAAGTGGTAAAACGT+GGG | + | chr8_3:17463264-17463283 | None:intergenic | 30.0% | |
| ATGTATAAAGTGGTAAAACG+TGG | + | chr8_3:17463265-17463284 | None:intergenic | 30.0% | |
| TGCTGAAAACATGTATAAAG+TGG | + | chr8_3:17463275-17463294 | None:intergenic | 30.0% | |
| ! | ATTTTACCAGGTCTATGATT+TGG | - | chr8_3:17463483-17463502 | Msa1279840:CDS | 30.0% |
| ! | TTTTACCAGGTCTATGATTT+GGG | - | chr8_3:17463484-17463503 | Msa1279840:CDS | 30.0% |
| GCATCAACTTTATGCTAATT+TGG | - | chr8_3:17463531-17463550 | Msa1279840:intron | 30.0% | |
| TTGGAAAAGCTAAAACACAA+TGG | - | chr8_3:17463550-17463569 | Msa1279840:intron | 30.0% | |
| ATCAAAAGTGGAAAACACAA+AGG | + | chr8_3:17463629-17463648 | None:intergenic | 30.0% | |
| GACAAAAATCACATCAAAAG+TGG | + | chr8_3:17463641-17463660 | None:intergenic | 30.0% | |
| TTATGAAATTCTCATAGCTC+AGG | + | chr8_3:17463876-17463895 | None:intergenic | 30.0% | |
| TTTAGCCATGATCACATTTA+AGG | - | chr8_3:17464089-17464108 | Msa1279840:intron | 30.0% | |
| !! | TTTAAGGTTTTACCCTTTGT+TGG | - | chr8_3:17464105-17464124 | Msa1279840:intron | 30.0% |
| CAAAGGAAATGAAAATAGAC+AGG | - | chr8_3:17464242-17464261 | Msa1279840:CDS | 30.0% | |
| AAATTGTGAAACTTCTCAGA+TGG | - | chr8_3:17464291-17464310 | Msa1279840:CDS | 30.0% | |
| AAGATAATAACAATGGGTGA+TGG | - | chr8_3:17462617-17462636 | Msa1279840:CDS | 30.0% | |
| ATTGAAGGAATTTACGATAC+CGG | - | chr8_3:17462655-17462674 | Msa1279840:intron | 30.0% | |
| ! | GTTTTCATTAACTCCAAAAG+TGG | - | chr8_3:17462743-17462762 | Msa1279840:intron | 30.0% |
| GTGACTGTAATGTTAGAATT+TGG | - | chr8_3:17462925-17462944 | Msa1279840:intron | 30.0% | |
| CTAAAAATGTGTTTATACCC+GGG | + | chr8_3:17463145-17463164 | None:intergenic | 30.0% | |
| CCTAAAAATGTGTTTATACC+CGG | + | chr8_3:17463146-17463165 | None:intergenic | 30.0% | |
| !!! | TATGTCATGGTTTTGAATTG+CGG | - | chr8_3:17463167-17463186 | Msa1279840:intron | 30.0% |
| ! | CCGTAATATAAAAGGTTTTG+AGG | - | chr8_3:17463197-17463216 | Msa1279840:CDS | 30.0% |
| TGTATAAAGTGGTAAAACGT+GGG | + | chr8_3:17463264-17463283 | None:intergenic | 30.0% | |
| ATGTATAAAGTGGTAAAACG+TGG | + | chr8_3:17463265-17463284 | None:intergenic | 30.0% | |
| TGCTGAAAACATGTATAAAG+TGG | + | chr8_3:17463275-17463294 | None:intergenic | 30.0% | |
| ! | ATTTTACCAGGTCTATGATT+TGG | - | chr8_3:17463483-17463502 | Msa1279840:CDS | 30.0% |
| ! | TTTTACCAGGTCTATGATTT+GGG | - | chr8_3:17463484-17463503 | Msa1279840:CDS | 30.0% |
| GCATCAACTTTATGCTAATT+TGG | - | chr8_3:17463531-17463550 | Msa1279840:intron | 30.0% | |
| TTGGAAAAGCTAAAACACAA+TGG | - | chr8_3:17463550-17463569 | Msa1279840:intron | 30.0% | |
| ATCAAAAGTGGAAAACACAA+AGG | + | chr8_3:17463629-17463648 | None:intergenic | 30.0% | |
| GACAAAAATCACATCAAAAG+TGG | + | chr8_3:17463641-17463660 | None:intergenic | 30.0% | |
| TTATGAAATTCTCATAGCTC+AGG | + | chr8_3:17463876-17463895 | None:intergenic | 30.0% | |
| TTTAGCCATGATCACATTTA+AGG | - | chr8_3:17464089-17464108 | Msa1279840:intron | 30.0% | |
| !! | TTTAAGGTTTTACCCTTTGT+TGG | - | chr8_3:17464105-17464124 | Msa1279840:intron | 30.0% |
| CAAAGGAAATGAAAATAGAC+AGG | - | chr8_3:17464242-17464261 | Msa1279840:CDS | 30.0% | |
| AAATTGTGAAACTTCTCAGA+TGG | - | chr8_3:17464291-17464310 | Msa1279840:CDS | 30.0% | |
| ACCGGATTATATACTATTGC+CGG | - | chr8_3:17462673-17462692 | Msa1279840:intron | 35.0% | |
| GAGTTAATGAAAACAACGAC+AGG | + | chr8_3:17462737-17462756 | None:intergenic | 35.0% | |
| TTCATTAACTCCAAAAGTGG+TGG | - | chr8_3:17462746-17462765 | Msa1279840:intron | 35.0% | |
| ATGTTGTTAAATATCGGCCA+TGG | - | chr8_3:17462962-17462981 | Msa1279840:intron | 35.0% | |
| ! | AAGTCCAATTTTATCGATGG+CGG | + | chr8_3:17463085-17463104 | None:intergenic | 35.0% |
| TGGACTTAATGCTACAAAAC+TGG | - | chr8_3:17463098-17463117 | Msa1279840:intron | 35.0% | |
| !! | TGCTACAAAACTGGTTTGTA+TGG | - | chr8_3:17463107-17463126 | Msa1279840:intron | 35.0% |
| !! | AAAACTGGTTTGTATGGTCA+GGG | - | chr8_3:17463113-17463132 | Msa1279840:intron | 35.0% |
| ! | CCGGGTATAAACACATTTTT+AGG | - | chr8_3:17463143-17463162 | Msa1279840:intron | 35.0% |
| !! | CACATTTTTAGGCTATGTCA+TGG | - | chr8_3:17463154-17463173 | Msa1279840:intron | 35.0% |
| ! | GGAAACAGAGGTTGAAATTT+TGG | + | chr8_3:17463243-17463262 | None:intergenic | 35.0% |
| GTCCAACATTGGATGATATA+TGG | + | chr8_3:17463330-17463349 | None:intergenic | 35.0% | |
| ATCACAATCTCATTGTGTGT+TGG | + | chr8_3:17463355-17463374 | None:intergenic | 35.0% | |
| ACACAATGAGATTGTGATTG+AGG | - | chr8_3:17463357-17463376 | Msa1279840:intron | 35.0% | |
| ! | TGTAACCATGACTGTGATTT+TGG | - | chr8_3:17463430-17463449 | Msa1279840:CDS | 35.0% |
| TCAAACCAAAATCACAGTCA+TGG | + | chr8_3:17463438-17463457 | None:intergenic | 35.0% | |
| !!! | TTTTGGTTTGATCGATGCTA+AGG | - | chr8_3:17463447-17463466 | Msa1279840:CDS | 35.0% |
| ATGCTGCTGAAATTCAGAAT+AGG | - | chr8_3:17463581-17463600 | Msa1279840:intron | 35.0% | |
| AATAATCTCCCCTTTGCATT+TGG | - | chr8_3:17463820-17463839 | Msa1279840:intron | 35.0% | |
| GAATCATGTAAAAGCTGCAA+AGG | - | chr8_3:17464225-17464244 | Msa1279840:CDS | 35.0% | |
| CTAACAAATTAGACGTTGGA+TGG | + | chr8_3:17464410-17464429 | None:intergenic | 35.0% | |
| ACCGGATTATATACTATTGC+CGG | - | chr8_3:17462673-17462692 | Msa1279840:intron | 35.0% | |
| GAGTTAATGAAAACAACGAC+AGG | + | chr8_3:17462737-17462756 | None:intergenic | 35.0% | |
| TTCATTAACTCCAAAAGTGG+TGG | - | chr8_3:17462746-17462765 | Msa1279840:intron | 35.0% | |
| ATGTTGTTAAATATCGGCCA+TGG | - | chr8_3:17462962-17462981 | Msa1279840:intron | 35.0% | |
| ! | AAGTCCAATTTTATCGATGG+CGG | + | chr8_3:17463085-17463104 | None:intergenic | 35.0% |
| TGGACTTAATGCTACAAAAC+TGG | - | chr8_3:17463098-17463117 | Msa1279840:intron | 35.0% | |
| !! | TGCTACAAAACTGGTTTGTA+TGG | - | chr8_3:17463107-17463126 | Msa1279840:intron | 35.0% |
| !! | AAAACTGGTTTGTATGGTCA+GGG | - | chr8_3:17463113-17463132 | Msa1279840:intron | 35.0% |
| ! | CCGGGTATAAACACATTTTT+AGG | - | chr8_3:17463143-17463162 | Msa1279840:intron | 35.0% |
| !! | CACATTTTTAGGCTATGTCA+TGG | - | chr8_3:17463154-17463173 | Msa1279840:intron | 35.0% |
| ! | GGAAACAGAGGTTGAAATTT+TGG | + | chr8_3:17463243-17463262 | None:intergenic | 35.0% |
| GTCCAACATTGGATGATATA+TGG | + | chr8_3:17463330-17463349 | None:intergenic | 35.0% | |
| ATCACAATCTCATTGTGTGT+TGG | + | chr8_3:17463355-17463374 | None:intergenic | 35.0% | |
| ACACAATGAGATTGTGATTG+AGG | - | chr8_3:17463357-17463376 | Msa1279840:intron | 35.0% | |
| ! | TGTAACCATGACTGTGATTT+TGG | - | chr8_3:17463430-17463449 | Msa1279840:CDS | 35.0% |
| TCAAACCAAAATCACAGTCA+TGG | + | chr8_3:17463438-17463457 | None:intergenic | 35.0% | |
| !!! | TTTTGGTTTGATCGATGCTA+AGG | - | chr8_3:17463447-17463466 | Msa1279840:CDS | 35.0% |
| ATGCTGCTGAAATTCAGAAT+AGG | - | chr8_3:17463581-17463600 | Msa1279840:intron | 35.0% | |
| AATAATCTCCCCTTTGCATT+TGG | - | chr8_3:17463820-17463839 | Msa1279840:intron | 35.0% | |
| GAATCATGTAAAAGCTGCAA+AGG | - | chr8_3:17464225-17464244 | Msa1279840:CDS | 35.0% | |
| CTAACAAATTAGACGTTGGA+TGG | + | chr8_3:17464410-17464429 | None:intergenic | 35.0% | |
| CCCGGCAATAGTATATAATC+CGG | + | chr8_3:17462677-17462696 | None:intergenic | 40.0% | |
| CCGGATTATATACTATTGCC+GGG | - | chr8_3:17462674-17462693 | Msa1279840:intron | 40.0% | |
| ! | GGATTTTCGTTGTGACGTAA+GGG | - | chr8_3:17462887-17462906 | Msa1279840:intron | 40.0% |
| !!! | TGTGACGTAAGGGTTTTAGA+TGG | - | chr8_3:17462897-17462916 | Msa1279840:intron | 40.0% |
| TTGTTAAATATCGGCCATGG+CGG | - | chr8_3:17462965-17462984 | Msa1279840:intron | 40.0% | |
| !! | CAAAACTGGTTTGTATGGTC+AGG | - | chr8_3:17463112-17463131 | Msa1279840:intron | 40.0% |
| GGCCATATATCATCCAATGT+TGG | - | chr8_3:17463325-17463344 | Msa1279840:intron | 40.0% | |
| TTGCTTGAAATCTAGGTTGC+AGG | - | chr8_3:17463703-17463722 | Msa1279840:intron | 40.0% | |
| TGTACCCATCCAAATGCAAA+GGG | + | chr8_3:17463832-17463851 | None:intergenic | 40.0% | |
| ATGTACCCATCCAAATGCAA+AGG | + | chr8_3:17463833-17463852 | None:intergenic | 40.0% | |
| TCAGAAATGATGCCACTGAT+TGG | + | chr8_3:17464207-17464226 | None:intergenic | 40.0% | |
| CCCGGCAATAGTATATAATC+CGG | + | chr8_3:17462677-17462696 | None:intergenic | 40.0% | |
| CCGGATTATATACTATTGCC+GGG | - | chr8_3:17462674-17462693 | Msa1279840:intron | 40.0% | |
| ! | GGATTTTCGTTGTGACGTAA+GGG | - | chr8_3:17462887-17462906 | Msa1279840:intron | 40.0% |
| !!! | TGTGACGTAAGGGTTTTAGA+TGG | - | chr8_3:17462897-17462916 | Msa1279840:intron | 40.0% |
| TTGTTAAATATCGGCCATGG+CGG | - | chr8_3:17462965-17462984 | Msa1279840:intron | 40.0% | |
| !! | CAAAACTGGTTTGTATGGTC+AGG | - | chr8_3:17463112-17463131 | Msa1279840:intron | 40.0% |
| GGCCATATATCATCCAATGT+TGG | - | chr8_3:17463325-17463344 | Msa1279840:intron | 40.0% | |
| TTGCTTGAAATCTAGGTTGC+AGG | - | chr8_3:17463703-17463722 | Msa1279840:intron | 40.0% | |
| TGTACCCATCCAAATGCAAA+GGG | + | chr8_3:17463832-17463851 | None:intergenic | 40.0% | |
| ATGTACCCATCCAAATGCAA+AGG | + | chr8_3:17463833-17463852 | None:intergenic | 40.0% | |
| TCAGAAATGATGCCACTGAT+TGG | + | chr8_3:17464207-17464226 | None:intergenic | 40.0% | |
| AAAACAACGACAGGACATGC+AGG | + | chr8_3:17462728-17462747 | None:intergenic | 45.0% | |
| !!! | GCGATCGCGGTTTTGAAAAT+CGG | - | chr8_3:17462864-17462883 | Msa1279840:intron | 45.0% |
| !!! | CGATCGCGGTTTTGAAAATC+GGG | - | chr8_3:17462865-17462884 | Msa1279840:intron | 45.0% |
| !!! | GATCGCGGTTTTGAAAATCG+GGG | - | chr8_3:17462866-17462885 | Msa1279840:intron | 45.0% |
| ! | GGGATTTTCGTTGTGACGTA+AGG | - | chr8_3:17462886-17462905 | Msa1279840:intron | 45.0% |
| CATCCTTCACAAATCGGTCA+TGG | + | chr8_3:17463018-17463037 | None:intergenic | 45.0% | |
| !! | CATGACCGATTTGTGAAGGA+TGG | - | chr8_3:17463016-17463035 | Msa1279840:intron | 45.0% |
| CACCACCATCCTTCACAAAT+CGG | + | chr8_3:17463024-17463043 | None:intergenic | 45.0% | |
| AACTCCACCATCTTAAGCCA+CGG | + | chr8_3:17463047-17463066 | None:intergenic | 45.0% | |
| !!! | GGCTTAAGATGGTGGAGTTT+TGG | - | chr8_3:17463048-17463067 | Msa1279840:intron | 45.0% |
| !!! | CCAATTTTATCGATGGCGGA+TGG | + | chr8_3:17463081-17463100 | None:intergenic | 45.0% |
| CCATCCGCCATCGATAAAAT+TGG | - | chr8_3:17463078-17463097 | Msa1279840:intron | 45.0% | |
| !!! | AGGTTTTGAGGTCTCTGCAA+CGG | - | chr8_3:17463209-17463228 | Msa1279840:CDS | 45.0% |
| TGGTAAAACGTGGGAAACAG+AGG | + | chr8_3:17463255-17463274 | None:intergenic | 45.0% | |
| ACCGCCGCGAATTAAAATCA+CGG | - | chr8_3:17463303-17463322 | Msa1279840:intron | 45.0% | |
| !!! | TGGCCCGTGATTTTAATTCG+CGG | + | chr8_3:17463310-17463329 | None:intergenic | 45.0% |
| GTACTCCCAAATCATAGACC+TGG | + | chr8_3:17463492-17463511 | None:intergenic | 45.0% | |
| ! | AGTTGATGCAGCACCTTATC+TGG | + | chr8_3:17463520-17463539 | None:intergenic | 45.0% |
| CTTGAAATCTAGGTTGCAGG+TGG | - | chr8_3:17463706-17463725 | Msa1279840:intron | 45.0% | |
| AGATTATTTCCTGTCCCGAG+TGG | + | chr8_3:17463808-17463827 | None:intergenic | 45.0% | |
| ATCTCCCCTTTGCATTTGGA+TGG | - | chr8_3:17463824-17463843 | Msa1279840:intron | 45.0% | |
| TCTCCCCTTTGCATTTGGAT+GGG | - | chr8_3:17463825-17463844 | Msa1279840:intron | 45.0% | |
| GTACCCATCCAAATGCAAAG+GGG | + | chr8_3:17463831-17463850 | None:intergenic | 45.0% | |
| CATGCACAGCTTCCAACAAA+GGG | + | chr8_3:17464120-17464139 | None:intergenic | 45.0% | |
| TCATGCACAGCTTCCAACAA+AGG | + | chr8_3:17464121-17464140 | None:intergenic | 45.0% | |
| ACTGATTGGATGTCTGTGGT+AGG | + | chr8_3:17464193-17464212 | None:intergenic | 45.0% | |
| TACCACAGACATCCAATCAG+TGG | - | chr8_3:17464192-17464211 | Msa1279840:intron | 45.0% | |
| GTCCACGGTCTTCTAACAAA+TGG | - | chr8_3:17464383-17464402 | Msa1279840:CDS | 45.0% | |
| ! | GTCCATTTGTTAGAAGACCG+TGG | + | chr8_3:17464388-17464407 | None:intergenic | 45.0% |
| AAAACAACGACAGGACATGC+AGG | + | chr8_3:17462728-17462747 | None:intergenic | 45.0% | |
| !!! | GCGATCGCGGTTTTGAAAAT+CGG | - | chr8_3:17462864-17462883 | Msa1279840:intron | 45.0% |
| !!! | CGATCGCGGTTTTGAAAATC+GGG | - | chr8_3:17462865-17462884 | Msa1279840:intron | 45.0% |
| !!! | GATCGCGGTTTTGAAAATCG+GGG | - | chr8_3:17462866-17462885 | Msa1279840:intron | 45.0% |
| ! | GGGATTTTCGTTGTGACGTA+AGG | - | chr8_3:17462886-17462905 | Msa1279840:intron | 45.0% |
| CATCCTTCACAAATCGGTCA+TGG | + | chr8_3:17463018-17463037 | None:intergenic | 45.0% | |
| !! | CATGACCGATTTGTGAAGGA+TGG | - | chr8_3:17463016-17463035 | Msa1279840:intron | 45.0% |
| CACCACCATCCTTCACAAAT+CGG | + | chr8_3:17463024-17463043 | None:intergenic | 45.0% | |
| AACTCCACCATCTTAAGCCA+CGG | + | chr8_3:17463047-17463066 | None:intergenic | 45.0% | |
| !!! | GGCTTAAGATGGTGGAGTTT+TGG | - | chr8_3:17463048-17463067 | Msa1279840:intron | 45.0% |
| !!! | CCAATTTTATCGATGGCGGA+TGG | + | chr8_3:17463081-17463100 | None:intergenic | 45.0% |
| CCATCCGCCATCGATAAAAT+TGG | - | chr8_3:17463078-17463097 | Msa1279840:intron | 45.0% | |
| !!! | AGGTTTTGAGGTCTCTGCAA+CGG | - | chr8_3:17463209-17463228 | Msa1279840:CDS | 45.0% |
| TGGTAAAACGTGGGAAACAG+AGG | + | chr8_3:17463255-17463274 | None:intergenic | 45.0% | |
| ACCGCCGCGAATTAAAATCA+CGG | - | chr8_3:17463303-17463322 | Msa1279840:intron | 45.0% | |
| !!! | TGGCCCGTGATTTTAATTCG+CGG | + | chr8_3:17463310-17463329 | None:intergenic | 45.0% |
| GTACTCCCAAATCATAGACC+TGG | + | chr8_3:17463492-17463511 | None:intergenic | 45.0% | |
| ! | AGTTGATGCAGCACCTTATC+TGG | + | chr8_3:17463520-17463539 | None:intergenic | 45.0% |
| CTTGAAATCTAGGTTGCAGG+TGG | - | chr8_3:17463706-17463725 | Msa1279840:intron | 45.0% | |
| AGATTATTTCCTGTCCCGAG+TGG | + | chr8_3:17463808-17463827 | None:intergenic | 45.0% | |
| ATCTCCCCTTTGCATTTGGA+TGG | - | chr8_3:17463824-17463843 | Msa1279840:intron | 45.0% | |
| TCTCCCCTTTGCATTTGGAT+GGG | - | chr8_3:17463825-17463844 | Msa1279840:intron | 45.0% | |
| GTACCCATCCAAATGCAAAG+GGG | + | chr8_3:17463831-17463850 | None:intergenic | 45.0% | |
| CATGCACAGCTTCCAACAAA+GGG | + | chr8_3:17464120-17464139 | None:intergenic | 45.0% | |
| TCATGCACAGCTTCCAACAA+AGG | + | chr8_3:17464121-17464140 | None:intergenic | 45.0% | |
| ACTGATTGGATGTCTGTGGT+AGG | + | chr8_3:17464193-17464212 | None:intergenic | 45.0% | |
| TACCACAGACATCCAATCAG+TGG | - | chr8_3:17464192-17464211 | Msa1279840:intron | 45.0% | |
| GTCCACGGTCTTCTAACAAA+TGG | - | chr8_3:17464383-17464402 | Msa1279840:CDS | 45.0% | |
| ! | GTCCATTTGTTAGAAGACCG+TGG | + | chr8_3:17464388-17464407 | None:intergenic | 45.0% |
| ACACCTCTGTTCTCAGTTCC+CGG | + | chr8_3:17462695-17462714 | None:intergenic | 50.0% | |
| TCCAAAAGTGGTGGTCAGCT+TGG | - | chr8_3:17462755-17462774 | Msa1279840:intron | 50.0% | |
| ! | ACCAAGCTGACCACCACTTT+TGG | + | chr8_3:17462759-17462778 | None:intergenic | 50.0% |
| AAAAGTGGTGGTCAGCTTGG+TGG | - | chr8_3:17462758-17462777 | Msa1279840:intron | 50.0% | |
| !!! | ATATCGGCCATGGCGGATTT+TGG | - | chr8_3:17462972-17462991 | Msa1279840:intron | 50.0% |
| TCCACAACCAAAATCCGCCA+TGG | + | chr8_3:17462982-17463001 | None:intergenic | 50.0% | |
| CCTTCACAAATCGGTCATGG+CGG | + | chr8_3:17463015-17463034 | None:intergenic | 50.0% | |
| !! | GACCGATTTGTGAAGGATGG+TGG | - | chr8_3:17463019-17463038 | Msa1279840:intron | 50.0% |
| !!! | CCCGTGATTTTAATTCGCGG+CGG | + | chr8_3:17463307-17463326 | None:intergenic | 50.0% |
| CCGCCGCGAATTAAAATCAC+GGG | - | chr8_3:17463304-17463323 | Msa1279840:intron | 50.0% | |
| ! | GTGTGTTGGCAGTCCAACAT+TGG | + | chr8_3:17463341-17463360 | None:intergenic | 50.0% |
| ! | GGGAGTACATGCTCCAGATA+AGG | - | chr8_3:17463504-17463523 | Msa1279840:CDS | 50.0% |
| ATCTAGGTTGCAGGTGGAGA+TGG | - | chr8_3:17463712-17463731 | Msa1279840:intron | 50.0% | |
| AGTGGCACTGTTGCAATTGG+CGG | + | chr8_3:17463790-17463809 | None:intergenic | 50.0% | |
| ! | CCAATTGCAACAGTGCCACT+CGG | - | chr8_3:17463790-17463809 | Msa1279840:intron | 50.0% |
| ! | CAATTGCAACAGTGCCACTC+GGG | - | chr8_3:17463791-17463810 | Msa1279840:intron | 50.0% |
| ! | TGCCACTGATTGGATGTCTG+TGG | + | chr8_3:17464197-17464216 | None:intergenic | 50.0% |
| !! | TGCACTGCGGTCGATTTGTT+AGG | - | chr8_3:17464359-17464378 | Msa1279840:CDS | 50.0% |
| !! | GCACTGCGGTCGATTTGTTA+GGG | - | chr8_3:17464360-17464379 | Msa1279840:CDS | 50.0% |
| !! | CACTGCGGTCGATTTGTTAG+GGG | - | chr8_3:17464361-17464380 | Msa1279840:CDS | 50.0% |
| !! | GTCGATTTGTTAGGGGTCCA+CGG | - | chr8_3:17464368-17464387 | Msa1279840:CDS | 50.0% |
| ACACCTCTGTTCTCAGTTCC+CGG | + | chr8_3:17462695-17462714 | None:intergenic | 50.0% | |
| TCCAAAAGTGGTGGTCAGCT+TGG | - | chr8_3:17462755-17462774 | Msa1279840:intron | 50.0% | |
| ! | ACCAAGCTGACCACCACTTT+TGG | + | chr8_3:17462759-17462778 | None:intergenic | 50.0% |
| AAAAGTGGTGGTCAGCTTGG+TGG | - | chr8_3:17462758-17462777 | Msa1279840:intron | 50.0% | |
| !!! | ATATCGGCCATGGCGGATTT+TGG | - | chr8_3:17462972-17462991 | Msa1279840:intron | 50.0% |
| TCCACAACCAAAATCCGCCA+TGG | + | chr8_3:17462982-17463001 | None:intergenic | 50.0% | |
| CCTTCACAAATCGGTCATGG+CGG | + | chr8_3:17463015-17463034 | None:intergenic | 50.0% | |
| !! | GACCGATTTGTGAAGGATGG+TGG | - | chr8_3:17463019-17463038 | Msa1279840:intron | 50.0% |
| !!! | CCCGTGATTTTAATTCGCGG+CGG | + | chr8_3:17463307-17463326 | None:intergenic | 50.0% |
| CCGCCGCGAATTAAAATCAC+GGG | - | chr8_3:17463304-17463323 | Msa1279840:intron | 50.0% | |
| ! | GTGTGTTGGCAGTCCAACAT+TGG | + | chr8_3:17463341-17463360 | None:intergenic | 50.0% |
| ! | GGGAGTACATGCTCCAGATA+AGG | - | chr8_3:17463504-17463523 | Msa1279840:CDS | 50.0% |
| ATCTAGGTTGCAGGTGGAGA+TGG | - | chr8_3:17463712-17463731 | Msa1279840:intron | 50.0% | |
| AGTGGCACTGTTGCAATTGG+CGG | + | chr8_3:17463790-17463809 | None:intergenic | 50.0% | |
| ! | CCAATTGCAACAGTGCCACT+CGG | - | chr8_3:17463790-17463809 | Msa1279840:intron | 50.0% |
| ! | CAATTGCAACAGTGCCACTC+GGG | - | chr8_3:17463791-17463810 | Msa1279840:intron | 50.0% |
| ! | TGCCACTGATTGGATGTCTG+TGG | + | chr8_3:17464197-17464216 | None:intergenic | 50.0% |
| !! | TGCACTGCGGTCGATTTGTT+AGG | - | chr8_3:17464359-17464378 | Msa1279840:CDS | 50.0% |
| !! | GCACTGCGGTCGATTTGTTA+GGG | - | chr8_3:17464360-17464379 | Msa1279840:CDS | 50.0% |
| !! | CACTGCGGTCGATTTGTTAG+GGG | - | chr8_3:17464361-17464380 | Msa1279840:CDS | 50.0% |
| !! | GTCGATTTGTTAGGGGTCCA+CGG | - | chr8_3:17464368-17464387 | Msa1279840:CDS | 50.0% |
| TTGCCGGGAACTGAGAACAG+AGG | - | chr8_3:17462689-17462708 | Msa1279840:intron | 55.0% | |
| !!! | GCCATGGCGGATTTTGGTTG+TGG | - | chr8_3:17462978-17462997 | Msa1279840:intron | 55.0% |
| !! | CCGCCATGACCGATTTGTGA+AGG | - | chr8_3:17463012-17463031 | Msa1279840:intron | 55.0% |
| GTATGGTCAGGGATGTCTCC+CGG | - | chr8_3:17463124-17463143 | Msa1279840:intron | 55.0% | |
| TATGGTCAGGGATGTCTCCC+GGG | - | chr8_3:17463125-17463144 | Msa1279840:intron | 55.0% | |
| GTGGAGATGGTACTGCTAGC+TGG | - | chr8_3:17463725-17463744 | Msa1279840:intron | 55.0% | |
| ! | GGTACTGCTAGCTGGCTTCT+TGG | - | chr8_3:17463733-17463752 | Msa1279840:intron | 55.0% |
| ! | TGCTAGCTGGCTTCTTGGAG+TGG | - | chr8_3:17463738-17463757 | Msa1279840:intron | 55.0% |
| CCGAGTGGCACTGTTGCAAT+TGG | + | chr8_3:17463793-17463812 | None:intergenic | 55.0% | |
| TTGCCGGGAACTGAGAACAG+AGG | - | chr8_3:17462689-17462708 | Msa1279840:intron | 55.0% | |
| !!! | GCCATGGCGGATTTTGGTTG+TGG | - | chr8_3:17462978-17462997 | Msa1279840:intron | 55.0% |
| !! | CCGCCATGACCGATTTGTGA+AGG | - | chr8_3:17463012-17463031 | Msa1279840:intron | 55.0% |
| GTATGGTCAGGGATGTCTCC+CGG | - | chr8_3:17463124-17463143 | Msa1279840:intron | 55.0% | |
| TATGGTCAGGGATGTCTCCC+GGG | - | chr8_3:17463125-17463144 | Msa1279840:intron | 55.0% | |
| GTGGAGATGGTACTGCTAGC+TGG | - | chr8_3:17463725-17463744 | Msa1279840:intron | 55.0% | |
| ! | GGTACTGCTAGCTGGCTTCT+TGG | - | chr8_3:17463733-17463752 | Msa1279840:intron | 55.0% |
| ! | TGCTAGCTGGCTTCTTGGAG+TGG | - | chr8_3:17463738-17463757 | Msa1279840:intron | 55.0% |
| CCGAGTGGCACTGTTGCAAT+TGG | + | chr8_3:17463793-17463812 | None:intergenic | 55.0% | |
| ! | TGTGAAGGATGGTGGTGCCG+TGG | - | chr8_3:17463027-17463046 | Msa1279840:intron | 60.0% |
| !! | GGTGGTGCCGTGGCTTAAGA+TGG | - | chr8_3:17463037-17463056 | Msa1279840:intron | 60.0% |
| ! | GGTGCCGTGGCTTAAGATGG+TGG | - | chr8_3:17463040-17463059 | Msa1279840:intron | 60.0% |
| GTTGCAATTGGCGGCGGATG+AGG | + | chr8_3:17463781-17463800 | None:intergenic | 60.0% | |
| GGCACTGTTGCAATTGGCGG+CGG | + | chr8_3:17463787-17463806 | None:intergenic | 60.0% | |
| ! | TGTGAAGGATGGTGGTGCCG+TGG | - | chr8_3:17463027-17463046 | Msa1279840:intron | 60.0% |
| !! | GGTGGTGCCGTGGCTTAAGA+TGG | - | chr8_3:17463037-17463056 | Msa1279840:intron | 60.0% |
| ! | GGTGCCGTGGCTTAAGATGG+TGG | - | chr8_3:17463040-17463059 | Msa1279840:intron | 60.0% |
| GTTGCAATTGGCGGCGGATG+AGG | + | chr8_3:17463781-17463800 | None:intergenic | 60.0% | |
| GGCACTGTTGCAATTGGCGG+CGG | + | chr8_3:17463787-17463806 | None:intergenic | 60.0% | |
| ! | GCAACAGTGCCACTCGGGAC+AGG | - | chr8_3:17463796-17463815 | Msa1279840:intron | 65.0% |
| ! | GCAACAGTGCCACTCGGGAC+AGG | - | chr8_3:17463796-17463815 | Msa1279840:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 17462605 | 17464429 | 17462605 | ID=Msa1279840;Name=Msa1279840 |
| chr8_3 | mRNA | 17462605 | 17464429 | 17462605 | ID=Msa1279840-mRNA-1;Parent=Msa1279840;Name=Msa1279840-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|0.25|0|0.4|0.75|0.6|5|0|200 |
| chr8_3 | exon | 17464211 | 17464429 | 17464211 | ID=Msa1279840-mRNA-1:exon:6711;Parent=Msa1279840-mRNA-1 |
| chr8_3 | exon | 17463415 | 17463541 | 17463415 | ID=Msa1279840-mRNA-1:exon:6710;Parent=Msa1279840-mRNA-1 |
| chr8_3 | exon | 17463188 | 17463309 | 17463188 | ID=Msa1279840-mRNA-1:exon:6709;Parent=Msa1279840-mRNA-1 |
| chr8_3 | exon | 17462771 | 17462856 | 17462771 | ID=Msa1279840-mRNA-1:exon:6708;Parent=Msa1279840-mRNA-1 |
| chr8_3 | exon | 17462605 | 17462653 | 17462605 | ID=Msa1279840-mRNA-1:exon:6707;Parent=Msa1279840-mRNA-1 |
| chr8_3 | CDS | 17464211 | 17464429 | 17464211 | ID=Msa1279840-mRNA-1:cds;Parent=Msa1279840-mRNA-1 |
| chr8_3 | CDS | 17463415 | 17463541 | 17463415 | ID=Msa1279840-mRNA-1:cds;Parent=Msa1279840-mRNA-1 |
| chr8_3 | CDS | 17463188 | 17463309 | 17463188 | ID=Msa1279840-mRNA-1:cds;Parent=Msa1279840-mRNA-1 |
| chr8_3 | CDS | 17462771 | 17462856 | 17462771 | ID=Msa1279840-mRNA-1:cds;Parent=Msa1279840-mRNA-1 |
| chr8_3 | CDS | 17462605 | 17462653 | 17462605 | ID=Msa1279840-mRNA-1:cds;Parent=Msa1279840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
