AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0521010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0521010 MtrunA17_Chr3g0137081 99.273 275 2 0 98 372 1 275 0.0 564
Msa0521010 MtrunA17_Chr4g0001271 81.887 265 47 1 106 369 7 271 2.21e-162 456
Msa0521010 MtrunA17_Chr7g0267081 54.851 268 112 5 110 369 22 288 4.68e-94 283
Msa0521010 MtrunA17_Chr8g0386691 50.752 266 127 4 107 368 5 270 3.71e-89 270
Msa0521010 MtrunA17_Chr8g0386681 50.746 268 124 5 107 368 5 270 4.04e-87 264
Msa0521010 MtrunA17_Chr1g0177961 46.497 314 111 5 110 366 15 328 4.25e-85 261
Msa0521010 MtrunA17_Chr5g0418281 49.281 278 131 6 101 370 7 282 1.32e-81 250
Msa0521010 MtrunA17_Chr5g0447661 48.276 261 131 4 111 368 13 272 2.05e-80 247
Msa0521010 MtrunA17_Chr2g0321651 48.592 284 128 10 98 368 1 279 2.40e-74 232
Msa0521010 MtrunA17_Chr3g0144801 42.491 273 122 6 101 369 6 247 1.02e-67 214
Msa0521010 MtrunA17_Chr7g0228321 76.786 56 13 0 221 276 10 65 5.43e-25 96.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0521010 AT2G32070.1 78.030 264 57 1 107 369 6 269 1.20e-153 434
Msa0521010 AT1G80780.1 77.567 263 59 0 107 369 6 268 1.80e-152 431
Msa0521010 AT1G80780.2 77.567 263 59 0 107 369 6 268 1.80e-152 431
Msa0521010 AT1G80780.3 77.567 263 59 0 107 369 6 268 1.82e-152 431
Msa0521010 AT5G10960.1 76.806 263 61 0 107 369 6 268 2.21e-152 431
Msa0521010 AT1G15920.2 62.547 267 94 1 106 366 9 275 1.83e-118 345
Msa0521010 AT1G15920.1 62.547 267 94 1 106 366 9 275 1.83e-118 345
Msa0521010 AT3G44260.1 53.846 273 118 7 103 368 8 279 4.09e-91 275
Msa0521010 AT5G22250.1 52.985 268 118 7 109 368 10 277 3.95e-88 267
Msa0521010 AT1G06450.1 36.680 259 146 7 114 367 10 255 9.71e-45 158
Msa0521010 AT1G61470.1 35.743 249 140 6 115 357 4 238 3.35e-36 133
Msa0521010 AT3G44240.1 37.719 228 128 6 127 351 3 219 5.15e-35 129
Msa0521010 AT1G27820.1 34.034 238 141 6 115 347 8 234 4.35e-30 117
Msa0521010 AT1G27890.1 34.454 238 140 6 115 347 3 229 1.56e-27 110

Find 78 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCACAGTGGTTATGATTT+TGG 0.162019 3_4:+73593282 Msa0521010:CDS
TCCTCGACGAAGATCGATTT+TGG 0.237909 3_4:-73592361 None:intergenic
AAGAAAGAACAAAGTATAAT+TGG 0.288547 3_4:+73593624 Msa0521010:three_prime_UTR
TACTCACAGCTTGTACATTT+AGG 0.316594 3_4:+73593511 Msa0521010:CDS
CACTTCTGCCAGAAAGAAAA+TGG 0.325996 3_4:+73593697 Msa0521010:three_prime_UTR
AAAATGACGTCGTTTACAAT+TGG 0.327114 3_4:-73592225 None:intergenic
GGAATCGACGTGAACAGATT+TGG 0.350401 3_4:+73593204 Msa0521010:CDS
GAGAGAGAAGAACGAAGGTT+GGG 0.357475 3_4:-73592304 None:intergenic
GAACAAGCTTGCGGAATTGC+TGG 0.383855 3_4:+73593443 Msa0521010:CDS
AGAGAGAGAAGAACGAAGGT+TGG 0.387895 3_4:-73592305 None:intergenic
AGAGGTATGGAACGATAATC+TGG 0.393193 3_4:+73592840 Msa0521010:CDS
TTTGACGTGCAGGGCTTTGC+CGG 0.395764 3_4:+73593320 Msa0521010:CDS
AGTTTCCTGGTGTTGTTCTT+CGG 0.398208 3_4:+73592926 Msa0521010:CDS
GGCGAAACAGAGAAATATTC+TGG 0.400040 3_4:+73593558 Msa0521010:CDS
CGTCGTTTACAATTGGGCCT+GGG 0.407925 3_4:-73592218 None:intergenic
TGGGGTGCGAGGGTTGAGTC+TGG 0.408850 3_4:-73592285 None:intergenic
TATACTTATCAACAATTTCA+CGG 0.412664 3_4:-73592882 None:intergenic
AACTATCCGATCCAGCTTGA+TGG 0.415822 3_4:-73593488 None:intergenic
TCTGGTGTGTTGTATGGATT+AGG 0.418411 3_4:+73593576 Msa0521010:CDS
AAGTTCTGTAACAGTCTTCA+TGG 0.419529 3_4:+73593414 Msa0521010:CDS
GGTGTTGTTCTTCGGCCTGT+TGG 0.419609 3_4:+73592934 Msa0521010:CDS
AAATGACGTCGTTTACAATT+GGG 0.420982 3_4:-73592224 None:intergenic
AAATATTCTGGTGTGTTGTA+TGG 0.424598 3_4:+73593570 Msa0521010:CDS
GGAGAACTTCTGATGTCATC+CGG 0.426593 3_4:+73593225 Msa0521010:CDS
GTGTTGTTCTTCGGCCTGTT+GGG 0.429390 3_4:+73592935 Msa0521010:CDS
ACGTCGTTTACAATTGGGCC+TGG 0.432005 3_4:-73592219 None:intergenic
CGGAATTGCTGGAAGTTGAG+AGG 0.432657 3_4:+73593454 Msa0521010:CDS
GTCAACGAAGCAAAGGGATT+GGG 0.433233 3_4:-73592337 None:intergenic
ATGTTGAAGCTGATTCAGTT+AGG 0.437086 3_4:+73593012 Msa0521010:CDS
TGTTGAATGATAATGTTCAT+TGG 0.444197 3_4:+73593253 Msa0521010:CDS
GAAGCAAAGGGATTGGGAAA+TGG 0.457781 3_4:-73592331 None:intergenic
ATATGCTTAAAATTCCCAAC+AGG 0.468744 3_4:-73592949 None:intergenic
TGTTTGATATCATACACAAT+CGG 0.482779 3_4:-73593384 None:intergenic
TTGTACATTTAGGAAGTTGA+GGG 0.486839 3_4:+73593521 Msa0521010:CDS
TTAACGAAGGATTTACAGAA+AGG 0.493060 3_4:+73592799 Msa0521010:CDS
GTTGAATGATAATGTTCATT+GGG 0.498652 3_4:+73593254 Msa0521010:CDS
GTTTGATATCATACACAATC+GGG 0.509746 3_4:-73593383 None:intergenic
GCACTGATAGTCCTTGCATC+TGG 0.511115 3_4:+73593076 Msa0521010:CDS
CGATTCAAATCAGAGAGGTA+TGG 0.516845 3_4:+73592827 Msa0521010:CDS
GTTGGTGTGTGCCATCAAGC+TGG 0.516903 3_4:+73593477 Msa0521010:CDS
TTTGGAGTCAACGAAGCAAA+GGG 0.519348 3_4:-73592343 None:intergenic
TCTTAAAATCAATTCCGCAT+TGG 0.519845 3_4:-73593167 None:intergenic
GCGATGGATACAGAGTTTCC+TGG 0.522554 3_4:+73592913 Msa0521010:CDS
AGAACGAAGGTTGGGGTGCG+AGG 0.534010 3_4:-73592296 None:intergenic
GTCGTTTACAATTGGGCCTG+GGG 0.534292 3_4:-73592217 None:intergenic
AGTCAACGAAGCAAAGGGAT+TGG 0.535953 3_4:-73592338 None:intergenic
AGAGAGAAGAACGAAGGTTG+GGG 0.537636 3_4:-73592303 None:intergenic
CAAGCTAACAAAACAAGCTA+AGG 0.539782 3_4:-73593775 None:intergenic
GAGAACTTCTGATGTCATCC+GGG 0.551352 3_4:+73593226 Msa0521010:CDS
TTTAAGAAGAACAGCGAGCA+AGG 0.554251 3_4:+73593183 Msa0521010:CDS
ATTTGTACTCGGTGAGAACG+TGG 0.555563 3_4:-73592262 None:intergenic
CTTGTACATTTAGGAAGTTG+AGG 0.555789 3_4:+73593520 Msa0521010:CDS
AATCGATCTTCGTCGAGGAT+CGG 0.557321 3_4:+73592365 Msa0521010:CDS
GCTTTGCCGGATACACAAGC+TGG 0.557400 3_4:+73593333 Msa0521010:CDS
ATGGAACGATAATCTGGAAG+AGG 0.557973 3_4:+73592846 Msa0521010:CDS
GCAAGGACTATCAGTGCCAC+AGG 0.564639 3_4:-73593070 None:intergenic
TGGTGGTTTGAACAAGCTTG+CGG 0.579595 3_4:+73593434 Msa0521010:CDS
TTTGTACTCGGTGAGAACGT+GGG 0.579728 3_4:-73592261 None:intergenic
GAAGAGAGAGAGAAGAACGA+AGG 0.584387 3_4:-73592309 None:intergenic
GAACGAAGGTTGGGGTGCGA+GGG 0.586799 3_4:-73592295 None:intergenic
GTTGAGTCTGGATTTGTACT+CGG 0.590132 3_4:-73592273 None:intergenic
AAATTGAATTGCCAGATGCA+AGG 0.592828 3_4:-73593087 None:intergenic
TAAGTATAACTATGTTGCGA+TGG 0.597473 3_4:+73592897 Msa0521010:CDS
TTGCTGGAAGTTGAGAGGGT+TGG 0.602040 3_4:+73593459 Msa0521010:CDS
ATTATCATTCAACACAATCC+CGG 0.602210 3_4:-73593244 None:intergenic
TTGAGGGAAACATTCTTCAA+CGG 0.604445 3_4:+73593537 Msa0521010:CDS
TTGTACTCGGTGAGAACGTG+GGG 0.612039 3_4:-73592260 None:intergenic
ACAGGCCGAAGAACAACACC+AGG 0.618032 3_4:-73592931 None:intergenic
GGAATTGCTGGAAGTTGAGA+GGG 0.625969 3_4:+73593455 Msa0521010:CDS
GGACTATCAGTGCCACAGGT+AGG 0.632411 3_4:-73593066 None:intergenic
TGAAATGACGGATTTAACGA+AGG 0.651784 3_4:+73592786 Msa0521010:CDS
TGTGTGCCATCAAGCTGGAT+CGG 0.653723 3_4:+73593482 Msa0521010:CDS
TTCTGTAACAGTCTTCATGG+TGG 0.661335 3_4:+73593417 Msa0521010:CDS
TCCAAAATCGATCTTCGTCG+AGG 0.661811 3_4:+73592360 Msa0521010:CDS
AATGGAAATTTACCTACCTG+TGG 0.695151 3_4:+73593054 Msa0521010:CDS
CCTTGTAGTGAAGAAAACGA+AGG 0.744080 3_4:-73592399 None:intergenic
AGATTCGATTCAAATCAGAG+AGG 0.775869 3_4:+73592822 Msa0521010:CDS
GATTTGATAACAGATCTGAG+TGG 0.798204 3_4:+73592733 Msa0521010:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATACTTATCAACAATTTCA+CGG - chr3_4:73592885-73592904 None:intergenic 20.0%
!! AAGAAAGAACAAAGTATAAT+TGG + chr3_4:73593624-73593643 Msa0521010:three_prime_UTR 20.0%
!! TATACTTATCAACAATTTCA+CGG - chr3_4:73592885-73592904 None:intergenic 20.0%
!! AAGAAAGAACAAAGTATAAT+TGG + chr3_4:73593624-73593643 Msa0521010:three_prime_UTR 20.0%
! AGTTAATAGAGTGAAGAAAA+CGG - chr3_4:73592435-73592454 None:intergenic 25.0%
!!! TTTTAACTATCAGACTTTGA+AGG + chr3_4:73592978-73592997 Msa0521010:CDS 25.0%
!!! TTAACTTTTTCTGATGAGAA+TGG + chr3_4:73593036-73593055 Msa0521010:CDS 25.0%
!! TGTTGAATGATAATGTTCAT+TGG + chr3_4:73593253-73593272 Msa0521010:CDS 25.0%
!! GTTGAATGATAATGTTCATT+GGG + chr3_4:73593254-73593273 Msa0521010:CDS 25.0%
! TGTTTGATATCATACACAAT+CGG - chr3_4:73593387-73593406 None:intergenic 25.0%
! AGTTAATAGAGTGAAGAAAA+CGG - chr3_4:73592435-73592454 None:intergenic 25.0%
!!! TTTTAACTATCAGACTTTGA+AGG + chr3_4:73592978-73592997 Msa0521010:CDS 25.0%
!!! TTAACTTTTTCTGATGAGAA+TGG + chr3_4:73593036-73593055 Msa0521010:CDS 25.0%
!! TGTTGAATGATAATGTTCAT+TGG + chr3_4:73593253-73593272 Msa0521010:CDS 25.0%
!! GTTGAATGATAATGTTCATT+GGG + chr3_4:73593254-73593273 Msa0521010:CDS 25.0%
! TGTTTGATATCATACACAAT+CGG - chr3_4:73593387-73593406 None:intergenic 25.0%
AAATGACGTCGTTTACAATT+GGG - chr3_4:73592227-73592246 None:intergenic 30.0%
AAAATGACGTCGTTTACAAT+TGG - chr3_4:73592228-73592247 None:intergenic 30.0%
AATCGAATTGAAGTGAACTA+GGG - chr3_4:73592498-73592517 None:intergenic 30.0%
AAATCGAATTGAAGTGAACT+AGG - chr3_4:73592499-73592518 None:intergenic 30.0%
! TTTGTTGCTGTAGATTTGTT+AGG + chr3_4:73592682-73592701 Msa0521010:intron 30.0%
TTAACGAAGGATTTACAGAA+AGG + chr3_4:73592799-73592818 Msa0521010:CDS 30.0%
TAAGTATAACTATGTTGCGA+TGG + chr3_4:73592897-73592916 Msa0521010:CDS 30.0%
ATATGCTTAAAATTCCCAAC+AGG - chr3_4:73592952-73592971 None:intergenic 30.0%
TCTTAAAATCAATTCCGCAT+TGG - chr3_4:73593170-73593189 None:intergenic 30.0%
ATTATCATTCAACACAATCC+CGG - chr3_4:73593247-73593266 None:intergenic 30.0%
! TTTCACAGTGGTTATGATTT+TGG + chr3_4:73593282-73593301 Msa0521010:CDS 30.0%
GTTTGATATCATACACAATC+GGG - chr3_4:73593386-73593405 None:intergenic 30.0%
TTGTACATTTAGGAAGTTGA+GGG + chr3_4:73593521-73593540 Msa0521010:CDS 30.0%
AAATATTCTGGTGTGTTGTA+TGG + chr3_4:73593570-73593589 Msa0521010:CDS 30.0%
! AACAACAACCATTTTCTTTC+TGG - chr3_4:73593708-73593727 None:intergenic 30.0%
AAATGACGTCGTTTACAATT+GGG - chr3_4:73592227-73592246 None:intergenic 30.0%
AAAATGACGTCGTTTACAAT+TGG - chr3_4:73592228-73592247 None:intergenic 30.0%
AATCGAATTGAAGTGAACTA+GGG - chr3_4:73592498-73592517 None:intergenic 30.0%
AAATCGAATTGAAGTGAACT+AGG - chr3_4:73592499-73592518 None:intergenic 30.0%
! TTTGTTGCTGTAGATTTGTT+AGG + chr3_4:73592682-73592701 Msa0521010:intron 30.0%
TTAACGAAGGATTTACAGAA+AGG + chr3_4:73592799-73592818 Msa0521010:CDS 30.0%
TAAGTATAACTATGTTGCGA+TGG + chr3_4:73592897-73592916 Msa0521010:CDS 30.0%
ATATGCTTAAAATTCCCAAC+AGG - chr3_4:73592952-73592971 None:intergenic 30.0%
TCTTAAAATCAATTCCGCAT+TGG - chr3_4:73593170-73593189 None:intergenic 30.0%
ATTATCATTCAACACAATCC+CGG - chr3_4:73593247-73593266 None:intergenic 30.0%
! TTTCACAGTGGTTATGATTT+TGG + chr3_4:73593282-73593301 Msa0521010:CDS 30.0%
GTTTGATATCATACACAATC+GGG - chr3_4:73593386-73593405 None:intergenic 30.0%
TTGTACATTTAGGAAGTTGA+GGG + chr3_4:73593521-73593540 Msa0521010:CDS 30.0%
AAATATTCTGGTGTGTTGTA+TGG + chr3_4:73593570-73593589 Msa0521010:CDS 30.0%
! AACAACAACCATTTTCTTTC+TGG - chr3_4:73593708-73593727 None:intergenic 30.0%
! TAACTACTACTTCGTTTTCC+AGG + chr3_4:73592450-73592469 Msa0521010:intron 35.0%
! AACTACTACTTCGTTTTCCA+GGG + chr3_4:73592451-73592470 Msa0521010:intron 35.0%
ACTGAATTTGAAGATTCTGC+AGG + chr3_4:73592622-73592641 Msa0521010:intron 35.0%
!!! GTTAGGTTTTGAGATCTGAA+TGG + chr3_4:73592699-73592718 Msa0521010:intron 35.0%
! GATTTGATAACAGATCTGAG+TGG + chr3_4:73592733-73592752 Msa0521010:intron 35.0%
!!! AGATCTGAGTGGTTTTGATT+TGG + chr3_4:73592744-73592763 Msa0521010:intron 35.0%
!!! GAGTGGTTTTGATTTGGATT+TGG + chr3_4:73592750-73592769 Msa0521010:CDS 35.0%
!! TTTTGCTGTGTGTGAAATGA+CGG + chr3_4:73592774-73592793 Msa0521010:CDS 35.0%
!! TGAAATGACGGATTTAACGA+AGG + chr3_4:73592786-73592805 Msa0521010:CDS 35.0%
AGATTCGATTCAAATCAGAG+AGG + chr3_4:73592822-73592841 Msa0521010:CDS 35.0%
! ATGTTGAAGCTGATTCAGTT+AGG + chr3_4:73593012-73593031 Msa0521010:CDS 35.0%
AATGGAAATTTACCTACCTG+TGG + chr3_4:73593054-73593073 Msa0521010:CDS 35.0%
AAATTGAATTGCCAGATGCA+AGG - chr3_4:73593090-73593109 None:intergenic 35.0%
AAAAATCCAGCTTGTGTATC+CGG - chr3_4:73593342-73593361 None:intergenic 35.0%
!! GCTGGATTTTTCGATTTGAT+CGG + chr3_4:73593351-73593370 Msa0521010:CDS 35.0%
!! CTGGATTTTTCGATTTGATC+GGG + chr3_4:73593352-73593371 Msa0521010:CDS 35.0%
AAGTTCTGTAACAGTCTTCA+TGG + chr3_4:73593414-73593433 Msa0521010:CDS 35.0%
TACTCACAGCTTGTACATTT+AGG + chr3_4:73593511-73593530 Msa0521010:CDS 35.0%
CTTGTACATTTAGGAAGTTG+AGG + chr3_4:73593520-73593539 Msa0521010:CDS 35.0%
TTGAGGGAAACATTCTTCAA+CGG + chr3_4:73593537-73593556 Msa0521010:CDS 35.0%
CAAGCTAACAAAACAAGCTA+AGG - chr3_4:73593778-73593797 None:intergenic 35.0%
! TAACTACTACTTCGTTTTCC+AGG + chr3_4:73592450-73592469 Msa0521010:intron 35.0%
! AACTACTACTTCGTTTTCCA+GGG + chr3_4:73592451-73592470 Msa0521010:intron 35.0%
ACTGAATTTGAAGATTCTGC+AGG + chr3_4:73592622-73592641 Msa0521010:intron 35.0%
!!! GTTAGGTTTTGAGATCTGAA+TGG + chr3_4:73592699-73592718 Msa0521010:intron 35.0%
! GATTTGATAACAGATCTGAG+TGG + chr3_4:73592733-73592752 Msa0521010:intron 35.0%
!!! AGATCTGAGTGGTTTTGATT+TGG + chr3_4:73592744-73592763 Msa0521010:intron 35.0%
!!! GAGTGGTTTTGATTTGGATT+TGG + chr3_4:73592750-73592769 Msa0521010:CDS 35.0%
!! TTTTGCTGTGTGTGAAATGA+CGG + chr3_4:73592774-73592793 Msa0521010:CDS 35.0%
!! TGAAATGACGGATTTAACGA+AGG + chr3_4:73592786-73592805 Msa0521010:CDS 35.0%
AGATTCGATTCAAATCAGAG+AGG + chr3_4:73592822-73592841 Msa0521010:CDS 35.0%
! ATGTTGAAGCTGATTCAGTT+AGG + chr3_4:73593012-73593031 Msa0521010:CDS 35.0%
AATGGAAATTTACCTACCTG+TGG + chr3_4:73593054-73593073 Msa0521010:CDS 35.0%
AAATTGAATTGCCAGATGCA+AGG - chr3_4:73593090-73593109 None:intergenic 35.0%
AAAAATCCAGCTTGTGTATC+CGG - chr3_4:73593342-73593361 None:intergenic 35.0%
!! GCTGGATTTTTCGATTTGAT+CGG + chr3_4:73593351-73593370 Msa0521010:CDS 35.0%
!! CTGGATTTTTCGATTTGATC+GGG + chr3_4:73593352-73593371 Msa0521010:CDS 35.0%
AAGTTCTGTAACAGTCTTCA+TGG + chr3_4:73593414-73593433 Msa0521010:CDS 35.0%
TACTCACAGCTTGTACATTT+AGG + chr3_4:73593511-73593530 Msa0521010:CDS 35.0%
CTTGTACATTTAGGAAGTTG+AGG + chr3_4:73593520-73593539 Msa0521010:CDS 35.0%
TTGAGGGAAACATTCTTCAA+CGG + chr3_4:73593537-73593556 Msa0521010:CDS 35.0%
CAAGCTAACAAAACAAGCTA+AGG - chr3_4:73593778-73593797 None:intergenic 35.0%
ACCAAAAATTATCACACCCC+AGG + chr3_4:73592201-73592220 Msa0521010:CDS 40.0%
GTTGAGTCTGGATTTGTACT+CGG - chr3_4:73592276-73592295 None:intergenic 40.0%
! TTTGGAGTCAACGAAGCAAA+GGG - chr3_4:73592346-73592365 None:intergenic 40.0%
!!! TTTTGGAGTCAACGAAGCAA+AGG - chr3_4:73592347-73592366 None:intergenic 40.0%
CCTTGTAGTGAAGAAAACGA+AGG - chr3_4:73592402-73592421 None:intergenic 40.0%
! CCTTCGTTTTCTTCACTACA+AGG + chr3_4:73592399-73592418 Msa0521010:CDS 40.0%
TTGAAGTGAACTAGGGTTTG+AGG - chr3_4:73592491-73592510 None:intergenic 40.0%
AGCTTCGAATCAAACGTATG+AGG - chr3_4:73592596-73592615 None:intergenic 40.0%
CGATTCAAATCAGAGAGGTA+TGG + chr3_4:73592827-73592846 Msa0521010:CDS 40.0%
! AGAGGTATGGAACGATAATC+TGG + chr3_4:73592840-73592859 Msa0521010:CDS 40.0%
ATGGAACGATAATCTGGAAG+AGG + chr3_4:73592846-73592865 Msa0521010:CDS 40.0%
!! AGTTTCCTGGTGTTGTTCTT+CGG + chr3_4:73592926-73592945 Msa0521010:CDS 40.0%
TTTAAGAAGAACAGCGAGCA+AGG + chr3_4:73593183-73593202 Msa0521010:CDS 40.0%
!!! CATTGGGTTACTTTTCACAG+TGG + chr3_4:73593270-73593289 Msa0521010:CDS 40.0%
!!! TTTTGAAGCTTTTGACGTGC+AGG + chr3_4:73593310-73593329 Msa0521010:CDS 40.0%
!! TTTGAAGCTTTTGACGTGCA+GGG + chr3_4:73593311-73593330 Msa0521010:CDS 40.0%
TTCTGTAACAGTCTTCATGG+TGG + chr3_4:73593417-73593436 Msa0521010:CDS 40.0%
GGCGAAACAGAGAAATATTC+TGG + chr3_4:73593558-73593577 Msa0521010:CDS 40.0%
TCTGGTGTGTTGTATGGATT+AGG + chr3_4:73593576-73593595 Msa0521010:CDS 40.0%
CACTTCTGCCAGAAAGAAAA+TGG + chr3_4:73593697-73593716 Msa0521010:three_prime_UTR 40.0%
ACCAAAAATTATCACACCCC+AGG + chr3_4:73592201-73592220 Msa0521010:CDS 40.0%
GTTGAGTCTGGATTTGTACT+CGG - chr3_4:73592276-73592295 None:intergenic 40.0%
! TTTGGAGTCAACGAAGCAAA+GGG - chr3_4:73592346-73592365 None:intergenic 40.0%
!!! TTTTGGAGTCAACGAAGCAA+AGG - chr3_4:73592347-73592366 None:intergenic 40.0%
CCTTGTAGTGAAGAAAACGA+AGG - chr3_4:73592402-73592421 None:intergenic 40.0%
! CCTTCGTTTTCTTCACTACA+AGG + chr3_4:73592399-73592418 Msa0521010:CDS 40.0%
TTGAAGTGAACTAGGGTTTG+AGG - chr3_4:73592491-73592510 None:intergenic 40.0%
AGCTTCGAATCAAACGTATG+AGG - chr3_4:73592596-73592615 None:intergenic 40.0%
CGATTCAAATCAGAGAGGTA+TGG + chr3_4:73592827-73592846 Msa0521010:CDS 40.0%
! AGAGGTATGGAACGATAATC+TGG + chr3_4:73592840-73592859 Msa0521010:CDS 40.0%
ATGGAACGATAATCTGGAAG+AGG + chr3_4:73592846-73592865 Msa0521010:CDS 40.0%
!! AGTTTCCTGGTGTTGTTCTT+CGG + chr3_4:73592926-73592945 Msa0521010:CDS 40.0%
TTTAAGAAGAACAGCGAGCA+AGG + chr3_4:73593183-73593202 Msa0521010:CDS 40.0%
!!! CATTGGGTTACTTTTCACAG+TGG + chr3_4:73593270-73593289 Msa0521010:CDS 40.0%
!!! TTTTGAAGCTTTTGACGTGC+AGG + chr3_4:73593310-73593329 Msa0521010:CDS 40.0%
!! TTTGAAGCTTTTGACGTGCA+GGG + chr3_4:73593311-73593330 Msa0521010:CDS 40.0%
TTCTGTAACAGTCTTCATGG+TGG + chr3_4:73593417-73593436 Msa0521010:CDS 40.0%
GGCGAAACAGAGAAATATTC+TGG + chr3_4:73593558-73593577 Msa0521010:CDS 40.0%
TCTGGTGTGTTGTATGGATT+AGG + chr3_4:73593576-73593595 Msa0521010:CDS 40.0%
CACTTCTGCCAGAAAGAAAA+TGG + chr3_4:73593697-73593716 Msa0521010:three_prime_UTR 40.0%
! GCCTGGGGTGTGATAATTTT+TGG - chr3_4:73592205-73592224 None:intergenic 45.0%
! TTTGTACTCGGTGAGAACGT+GGG - chr3_4:73592264-73592283 None:intergenic 45.0%
! ATTTGTACTCGGTGAGAACG+TGG - chr3_4:73592265-73592284 None:intergenic 45.0%
AGAGAGAAGAACGAAGGTTG+GGG - chr3_4:73592306-73592325 None:intergenic 45.0%
GAGAGAGAAGAACGAAGGTT+GGG - chr3_4:73592307-73592326 None:intergenic 45.0%
AGAGAGAGAAGAACGAAGGT+TGG - chr3_4:73592308-73592327 None:intergenic 45.0%
GAAGAGAGAGAGAAGAACGA+AGG - chr3_4:73592312-73592331 None:intergenic 45.0%
GAAGCAAAGGGATTGGGAAA+TGG - chr3_4:73592334-73592353 None:intergenic 45.0%
GTCAACGAAGCAAAGGGATT+GGG - chr3_4:73592340-73592359 None:intergenic 45.0%
AGTCAACGAAGCAAAGGGAT+TGG - chr3_4:73592341-73592360 None:intergenic 45.0%
TCCAAAATCGATCTTCGTCG+AGG + chr3_4:73592360-73592379 Msa0521010:CDS 45.0%
!! TCCTCGACGAAGATCGATTT+TGG - chr3_4:73592364-73592383 None:intergenic 45.0%
AATCGATCTTCGTCGAGGAT+CGG + chr3_4:73592365-73592384 Msa0521010:CDS 45.0%
! AGGTTTGAAGTGAGAAACCC+TGG - chr3_4:73592471-73592490 None:intergenic 45.0%
GGAATCGACGTGAACAGATT+TGG + chr3_4:73593204-73593223 Msa0521010:CDS 45.0%
GGAGAACTTCTGATGTCATC+CGG + chr3_4:73593225-73593244 Msa0521010:CDS 45.0%
GAGAACTTCTGATGTCATCC+GGG + chr3_4:73593226-73593245 Msa0521010:CDS 45.0%
TGGTGGTTTGAACAAGCTTG+CGG + chr3_4:73593434-73593453 Msa0521010:CDS 45.0%
GGAATTGCTGGAAGTTGAGA+GGG + chr3_4:73593455-73593474 Msa0521010:CDS 45.0%
AACTATCCGATCCAGCTTGA+TGG - chr3_4:73593491-73593510 None:intergenic 45.0%
! GCCTGGGGTGTGATAATTTT+TGG - chr3_4:73592205-73592224 None:intergenic 45.0%
! TTTGTACTCGGTGAGAACGT+GGG - chr3_4:73592264-73592283 None:intergenic 45.0%
! ATTTGTACTCGGTGAGAACG+TGG - chr3_4:73592265-73592284 None:intergenic 45.0%
AGAGAGAAGAACGAAGGTTG+GGG - chr3_4:73592306-73592325 None:intergenic 45.0%
GAGAGAGAAGAACGAAGGTT+GGG - chr3_4:73592307-73592326 None:intergenic 45.0%
AGAGAGAGAAGAACGAAGGT+TGG - chr3_4:73592308-73592327 None:intergenic 45.0%
GAAGAGAGAGAGAAGAACGA+AGG - chr3_4:73592312-73592331 None:intergenic 45.0%
GAAGCAAAGGGATTGGGAAA+TGG - chr3_4:73592334-73592353 None:intergenic 45.0%
GTCAACGAAGCAAAGGGATT+GGG - chr3_4:73592340-73592359 None:intergenic 45.0%
AGTCAACGAAGCAAAGGGAT+TGG - chr3_4:73592341-73592360 None:intergenic 45.0%
TCCAAAATCGATCTTCGTCG+AGG + chr3_4:73592360-73592379 Msa0521010:CDS 45.0%
!! TCCTCGACGAAGATCGATTT+TGG - chr3_4:73592364-73592383 None:intergenic 45.0%
AATCGATCTTCGTCGAGGAT+CGG + chr3_4:73592365-73592384 Msa0521010:CDS 45.0%
! AGGTTTGAAGTGAGAAACCC+TGG - chr3_4:73592471-73592490 None:intergenic 45.0%
GGAATCGACGTGAACAGATT+TGG + chr3_4:73593204-73593223 Msa0521010:CDS 45.0%
GGAGAACTTCTGATGTCATC+CGG + chr3_4:73593225-73593244 Msa0521010:CDS 45.0%
GAGAACTTCTGATGTCATCC+GGG + chr3_4:73593226-73593245 Msa0521010:CDS 45.0%
TGGTGGTTTGAACAAGCTTG+CGG + chr3_4:73593434-73593453 Msa0521010:CDS 45.0%
GGAATTGCTGGAAGTTGAGA+GGG + chr3_4:73593455-73593474 Msa0521010:CDS 45.0%
AACTATCCGATCCAGCTTGA+TGG - chr3_4:73593491-73593510 None:intergenic 45.0%
GTCGTTTACAATTGGGCCTG+GGG - chr3_4:73592220-73592239 None:intergenic 50.0%
CGTCGTTTACAATTGGGCCT+GGG - chr3_4:73592221-73592240 None:intergenic 50.0%
ACGTCGTTTACAATTGGGCC+TGG - chr3_4:73592222-73592241 None:intergenic 50.0%
! TTGTACTCGGTGAGAACGTG+GGG - chr3_4:73592263-73592282 None:intergenic 50.0%
GCGATGGATACAGAGTTTCC+TGG + chr3_4:73592913-73592932 Msa0521010:CDS 50.0%
! GTGTTGTTCTTCGGCCTGTT+GGG + chr3_4:73592935-73592954 Msa0521010:CDS 50.0%
! GCACTGATAGTCCTTGCATC+TGG + chr3_4:73593076-73593095 Msa0521010:CDS 50.0%
! ATCGAGCTTTTGCGCCAATG+CGG + chr3_4:73593153-73593172 Msa0521010:CDS 50.0%
GAACAAGCTTGCGGAATTGC+TGG + chr3_4:73593443-73593462 Msa0521010:CDS 50.0%
CGGAATTGCTGGAAGTTGAG+AGG + chr3_4:73593454-73593473 Msa0521010:CDS 50.0%
TTGCTGGAAGTTGAGAGGGT+TGG + chr3_4:73593459-73593478 Msa0521010:CDS 50.0%
TGTGTGCCATCAAGCTGGAT+CGG + chr3_4:73593482-73593501 Msa0521010:CDS 50.0%
GTCGTTTACAATTGGGCCTG+GGG - chr3_4:73592220-73592239 None:intergenic 50.0%
CGTCGTTTACAATTGGGCCT+GGG - chr3_4:73592221-73592240 None:intergenic 50.0%
ACGTCGTTTACAATTGGGCC+TGG - chr3_4:73592222-73592241 None:intergenic 50.0%
! TTGTACTCGGTGAGAACGTG+GGG - chr3_4:73592263-73592282 None:intergenic 50.0%
GCGATGGATACAGAGTTTCC+TGG + chr3_4:73592913-73592932 Msa0521010:CDS 50.0%
! GTGTTGTTCTTCGGCCTGTT+GGG + chr3_4:73592935-73592954 Msa0521010:CDS 50.0%
! GCACTGATAGTCCTTGCATC+TGG + chr3_4:73593076-73593095 Msa0521010:CDS 50.0%
! ATCGAGCTTTTGCGCCAATG+CGG + chr3_4:73593153-73593172 Msa0521010:CDS 50.0%
GAACAAGCTTGCGGAATTGC+TGG + chr3_4:73593443-73593462 Msa0521010:CDS 50.0%
CGGAATTGCTGGAAGTTGAG+AGG + chr3_4:73593454-73593473 Msa0521010:CDS 50.0%
TTGCTGGAAGTTGAGAGGGT+TGG + chr3_4:73593459-73593478 Msa0521010:CDS 50.0%
TGTGTGCCATCAAGCTGGAT+CGG + chr3_4:73593482-73593501 Msa0521010:CDS 50.0%
ACAGGCCGAAGAACAACACC+AGG - chr3_4:73592934-73592953 None:intergenic 55.0%
!! GGTGTTGTTCTTCGGCCTGT+TGG + chr3_4:73592934-73592953 Msa0521010:CDS 55.0%
GGACTATCAGTGCCACAGGT+AGG - chr3_4:73593069-73593088 None:intergenic 55.0%
GCAAGGACTATCAGTGCCAC+AGG - chr3_4:73593073-73593092 None:intergenic 55.0%
TTTGACGTGCAGGGCTTTGC+CGG + chr3_4:73593320-73593339 Msa0521010:CDS 55.0%
GCTTTGCCGGATACACAAGC+TGG + chr3_4:73593333-73593352 Msa0521010:CDS 55.0%
GTTGGTGTGTGCCATCAAGC+TGG + chr3_4:73593477-73593496 Msa0521010:CDS 55.0%
ACAGGCCGAAGAACAACACC+AGG - chr3_4:73592934-73592953 None:intergenic 55.0%
!! GGTGTTGTTCTTCGGCCTGT+TGG + chr3_4:73592934-73592953 Msa0521010:CDS 55.0%
GGACTATCAGTGCCACAGGT+AGG - chr3_4:73593069-73593088 None:intergenic 55.0%
GCAAGGACTATCAGTGCCAC+AGG - chr3_4:73593073-73593092 None:intergenic 55.0%
TTTGACGTGCAGGGCTTTGC+CGG + chr3_4:73593320-73593339 Msa0521010:CDS 55.0%
GCTTTGCCGGATACACAAGC+TGG + chr3_4:73593333-73593352 Msa0521010:CDS 55.0%
GTTGGTGTGTGCCATCAAGC+TGG + chr3_4:73593477-73593496 Msa0521010:CDS 55.0%
GAACGAAGGTTGGGGTGCGA+GGG - chr3_4:73592298-73592317 None:intergenic 60.0%
AGAACGAAGGTTGGGGTGCG+AGG - chr3_4:73592299-73592318 None:intergenic 60.0%
GAACGAAGGTTGGGGTGCGA+GGG - chr3_4:73592298-73592317 None:intergenic 60.0%
AGAACGAAGGTTGGGGTGCG+AGG - chr3_4:73592299-73592318 None:intergenic 60.0%
TGGGGTGCGAGGGTTGAGTC+TGG - chr3_4:73592288-73592307 None:intergenic 65.0%
TGGGGTGCGAGGGTTGAGTC+TGG - chr3_4:73592288-73592307 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 73592174 73593855 73592174 ID=Msa0521010;Name=Msa0521010
chr3_4 mRNA 73592174 73593855 73592174 ID=Msa0521010-mRNA-1;Parent=Msa0521010;Name=Msa0521010-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0.5|1|1|0.5|2|238|372
chr3_4 exon 73592174 73592420 73592174 ID=Msa0521010-mRNA-1:exon:20684;Parent=Msa0521010-mRNA-1
chr3_4 exon 73592746 73593855 73592746 ID=Msa0521010-mRNA-1:exon:20685;Parent=Msa0521010-mRNA-1
chr3_4 CDS 73592174 73592420 73592174 ID=Msa0521010-mRNA-1:cds;Parent=Msa0521010-mRNA-1
chr3_4 CDS 73592746 73593617 73592746 ID=Msa0521010-mRNA-1:cds;Parent=Msa0521010-mRNA-1
chr3_4 three_prime_UTR 73593618 73593855 73593618 ID=Msa0521010-mRNA-1:three_prime_utr;Parent=Msa0521010-mRNA-1
Gene Sequence

>Msa0521010

TTAACGACTGATATCTTATTGTCGCATACCAAAAATTATCACACCCCAGGCCCAATTGTAAACGACGTCATTTTTAATCAAAACGACCCCACGTTCTCACCGAGTACAAATCCAGACTCAACCCTCGCACCCCAACCTTCGTTCTTCTCTCTCTCTTCCATTTCCCAATCCCTTTGCTTCGTTGACTCCAAAATCGATCTTCGTCGAGGATCGGTGATACTTCAACCTTCGTTTTCTTCACTACAAGATCTGAGTGGTTTTGATTTGGATTTGGATTTTGCTGTGTGTGAAATGACGGATTTAACGAAGGATTTACAGAAAGGAGATTCGATTCAAATCAGAGAGGTATGGAACGATAATCTGGAAGAGGAATTTGTGTTGATCCGTGAAATTGTTGATAAGTATAACTATGTTGCGATGGATACAGAGTTTCCTGGTGTTGTTCTTCGGCCTGTTGGGAATTTTAAGCATATTAACGATTTTAACTATCAGACTTTGAAGGATAACGTTGATATGTTGAAGCTGATTCAGTTAGGTTTAACTTTTTCTGATGAGAATGGAAATTTACCTACCTGTGGCACTGATAGTCCTTGCATCTGGCAATTCAATTTTCGCGAGTTTAATGTTAGCGAAGATATTTTCGCTGCTGATTCGATCGAGCTTTTGCGCCAATGCGGAATTGATTTTAAGAAGAACAGCGAGCAAGGAATCGACGTGAACAGATTTGGAGAACTTCTGATGTCATCCGGGATTGTGTTGAATGATAATGTTCATTGGGTTACTTTTCACAGTGGTTATGATTTTGGTTATCTTTTGAAGCTTTTGACGTGCAGGGCTTTGCCGGATACACAAGCTGGATTTTTCGATTTGATCGGGATTTATTTCCCGATTGTGTATGATATCAAACATTTGATGAAGTTCTGTAACAGTCTTCATGGTGGTTTGAACAAGCTTGCGGAATTGCTGGAAGTTGAGAGGGTTGGTGTGTGCCATCAAGCTGGATCGGATAGTTTACTCACAGCTTGTACATTTAGGAAGTTGAGGGAAACATTCTTCAACGGCGAAACAGAGAAATATTCTGGTGTGTTGTATGGATTAGGTGTTGAGAAAACAGACTAA

Protein sequence

>Msa0521010

LTTDILLSHTKNYHTPGPIVNDVIFNQNDPTFSPSTNPDSTLAPQPSFFSLSSISQSLCFVDSKIDLRRGSVILQPSFSSLQDLSGFDLDLDFAVCEMTDLTKDLQKGDSIQIREVWNDNLEEEFVLIREIVDKYNYVAMDTEFPGVVLRPVGNFKHINDFNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDSPCIWQFNFREFNVSEDIFAADSIELLRQCGIDFKKNSEQGIDVNRFGELLMSSGIVLNDNVHWVTFHSGYDFGYLLKLLTCRALPDTQAGFFDLIGIYFPIVYDIKHLMKFCNSLHGGLNKLAELLEVERVGVCHQAGSDSLLTACTFRKLRETFFNGETEKYSGVLYGLGVEKTD*