AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1184780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1184780 MtrunA17_Chr8g0350241 87.978 183 22 0 1 183 1 183 3.15e-120 337
Msa1184780 MtrunA17_Chr8g0350271 87.500 184 22 1 1 183 1 184 1.40e-117 330
Msa1184780 MtrunA17_Chr8g0350221 86.957 184 23 1 1 183 1 184 4.91e-117 329
Msa1184780 MtrunA17_Chr8g0350291 83.060 183 31 0 1 183 1 183 6.90e-112 316
Msa1184780 MtrunA17_Chr3g0109941 80.328 183 36 0 1 183 1 183 4.55e-110 311
Msa1184780 MtrunA17_Chr8g0350231 87.006 177 21 2 1 175 1 177 4.66e-109 309
Msa1184780 MtrunA17_Chr8g0350281 51.397 179 59 6 5 174 7 166 3.78e-48 155
Msa1184780 MtrunA17_Chr7g0246561 32.402 179 93 6 5 176 2 159 1.35e-21 86.3
Msa1184780 MtrunA17_Chr8g0350191 34.426 183 103 6 5 179 2 175 1.27e-19 81.6
Msa1184780 MtrunA17_Chr8g0350211 32.787 183 106 6 5 179 2 175 1.78e-19 81.3
Msa1184780 MtrunA17_Chr8g0350201 34.426 183 103 6 5 179 2 175 4.98e-19 80.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 48 sgRNAs with CRISPR-Local

Find 369 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAAAAGTGTTCGTCCTAT+TGG 0.271262 8_1:+20910396 Msa1184780:CDS
AATTATGGTGGTCGATTAAC+TGG 0.276699 8_1:+20910609 Msa1184780:CDS
ACAAATCTTTAAATAATGTT+TGG 0.280513 8_1:-20910696 None:intergenic
TTAAAAGTGTTCGTCCTATT+GGG 0.300858 8_1:+20910397 Msa1184780:CDS
TTGCTATTGGTATTCCCTTT+TGG 0.313784 8_1:+20910664 Msa1184780:CDS
TATTGTTATGTCCTTCAATT+TGG 0.315360 8_1:-20904432 None:intergenic
TTCACAAACATTAGAAATTA+CGG 0.337907 8_1:+20904516 Msa1184780:CDS
CAAATCTTTAAATAATGTTT+GGG 0.339025 8_1:-20910695 None:intergenic
TTAGAAATTACGGTTATATC+AGG 0.339630 8_1:+20904526 Msa1184780:CDS
GGTGGCAAGAATTGCCGTTT+TGG 0.348617 8_1:+20910419 Msa1184780:CDS
TGAGTTATAAATTGAGGGAT+TGG 0.355220 8_1:+20910484 Msa1184780:CDS
AACTCTAATGGTGTTGCTAT+TGG 0.365765 8_1:+20910651 Msa1184780:CDS
GATTGGGAAGGGAAGCAAAA+TGG 0.374296 8_1:+20910501 Msa1184780:CDS
GCAATTCTTGCCACCCCAAT+AGG 0.383363 8_1:-20910411 None:intergenic
GTTTGGGTAATTCCACCAAA+AGG 0.410769 8_1:-20910679 None:intergenic
CAGTTTGAGGGTGGTTGTGC+CGG 0.417940 8_1:+20910536 Msa1184780:CDS
AGTTATTCATTTCAGTTTGA+GGG 0.452076 8_1:+20910524 Msa1184780:CDS
TTCCATCACAACCAAATTGA+AGG 0.469735 8_1:+20904421 None:intergenic
GAGTTATAAATTGAGGGATT+GGG 0.478191 8_1:+20910485 Msa1184780:CDS
TGAAGGAAAATGATAATTGT+GGG 0.480545 8_1:+20904626 Msa1184780:CDS
GTCGTGCATGGAAAGAATTA+TGG 0.483126 8_1:+20910594 Msa1184780:CDS
GTGAAGGAAAATGATAATTG+TGG 0.484213 8_1:+20904625 Msa1184780:CDS
TTTGGGTAATTCCACCAAAA+GGG 0.494809 8_1:-20910678 None:intergenic
GAGTTATTCATTTCAGTTTG+AGG 0.495462 8_1:+20910523 Msa1184780:CDS
CCCGTTTAAAATATCCAAAA+CGG 0.515325 8_1:-20910433 None:intergenic
TGCAAGGTCAATCACGTTTG+AGG 0.523501 8_1:+20910359 Msa1184780:intron
GATGCATACGTTGTTGTTCG+AGG 0.525133 8_1:+20904571 Msa1184780:CDS
GAGAAGCAAACGGTCGTGCA+TGG 0.548258 8_1:+20910582 Msa1184780:CDS
GTTGGTGTCAAGAACTCTAA+TGG 0.557347 8_1:+20910639 Msa1184780:CDS
TATTCATTTCAGTTTGAGGG+TGG 0.561056 8_1:+20910527 Msa1184780:CDS
ATAAATTGAGGGATTGGGAA+GGG 0.564987 8_1:+20910490 Msa1184780:CDS
TAAAAGTGTTCGTCCTATTG+GGG 0.565563 8_1:+20910398 Msa1184780:CDS
TGAACATGCCATTGCATGCA+AGG 0.566598 8_1:+20904689 Msa1184780:CDS
GGTTGTGCCGGAGCAAAGAT+CGG 0.574606 8_1:+20910548 Msa1184780:CDS
TGGTGGTCGATTAACTGGAA+TGG 0.578834 8_1:+20910614 Msa1184780:CDS
CGATTAACTGGAATGGATGT+TGG 0.583378 8_1:+20910621 Msa1184780:CDS
AGGCGAAAATATTCATGTAA+CGG 0.589149 8_1:+20904546 Msa1184780:CDS
ACGGTAACCGATCTTTGCTC+CGG 0.597422 8_1:-20910555 None:intergenic
TATAAATTGAGGGATTGGGA+AGG 0.601127 8_1:+20910489 Msa1184780:CDS
AAGTGTTCGTCCTATTGGGG+TGG 0.615705 8_1:+20910401 Msa1184780:CDS
GTGATTGACCTTGCATGCAA+TGG 0.618595 8_1:-20904697 None:intergenic
GCAAAGATCGGTTACCGTGG+TGG 0.620546 8_1:+20910560 Msa1184780:CDS
TACCGTGGTGGAGAAGCAAA+CGG 0.624346 8_1:+20910572 Msa1184780:CDS
TGTTTGTGAAGCTACAACCA+TGG 0.632825 8_1:-20904503 None:intergenic
CGAAAATATTCATGTAACGG+AGG 0.635995 8_1:+20904549 Msa1184780:CDS
GACCGTTTGCTTCTCCACCA+CGG 0.665411 8_1:-20910574 None:intergenic
GTGCATGGAAAGAATTATGG+TGG 0.676893 8_1:+20910597 Msa1184780:CDS
GGAGCAAAGATCGGTTACCG+TGG 0.687601 8_1:+20910557 Msa1184780:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAGTAATTTTTTTTTGTA+GGG - chr8_1:20906266-20906285 None:intergenic 10.0%
!!! TATAAGTAATTTTTTTTTGT+AGG - chr8_1:20906267-20906286 None:intergenic 10.0%
!! TTAAAAAATTTAAGAGTTTA+AGG - chr8_1:20906327-20906346 None:intergenic 10.0%
!! AATACTATTAAAATTAAGTA+AGG + chr8_1:20906648-20906667 Msa1184780:intron 10.0%
!!! ATTATGACTAATATTTTTTA+AGG + chr8_1:20906836-20906855 Msa1184780:intron 10.0%
!!! TATTTCAATTATTATCTTTT+AGG + chr8_1:20907197-20907216 Msa1184780:intron 10.0%
!!! ATTTCAATTATTATCTTTTA+GGG + chr8_1:20907198-20907217 Msa1184780:intron 10.0%
!!! CATATTATACTATTTTTTTA+GGG - chr8_1:20907312-20907331 None:intergenic 10.0%
!!! ACATATTATACTATTTTTTT+AGG - chr8_1:20907313-20907332 None:intergenic 10.0%
!! TAACAAAAAAAAAATATGAT+AGG + chr8_1:20907332-20907351 Msa1184780:intron 10.0%
!! AATAAATTAAACAAAGTAAA+TGG - chr8_1:20907767-20907786 None:intergenic 10.0%
!!! TTTTAGATATAAATAGATAT+TGG + chr8_1:20908234-20908253 Msa1184780:intron 10.0%
!! CAAAAATTAACTTAAAAATA+GGG - chr8_1:20908520-20908539 None:intergenic 10.0%
!! ACAAAAATTAACTTAAAAAT+AGG - chr8_1:20908521-20908540 None:intergenic 10.0%
!!! GTAAAAAAATTCTATTTTTT+TGG - chr8_1:20908598-20908617 None:intergenic 10.0%
!!! ATGAATTTTTATATTTTTGA+CGG - chr8_1:20908649-20908668 None:intergenic 10.0%
!!! AAAATAGTTTCTATTTTTTT+TGG + chr8_1:20909239-20909258 Msa1184780:intron 10.0%
!! AAAAAGTGAAAAATAATTAA+TGG - chr8_1:20909702-20909721 None:intergenic 10.0%
!! TATTATGTGCAAAATATTAA+AGG - chr8_1:20905748-20905767 None:intergenic 15.0%
!! TATAAGAAGAATAAAAGTAA+GGG + chr8_1:20906163-20906182 Msa1184780:intron 15.0%
!! AATGCTATTAAAATTAAGTA+AGG - chr8_1:20906237-20906256 None:intergenic 15.0%
!!! AAACAAAATTTATTTTAGCA+GGG - chr8_1:20906298-20906317 None:intergenic 15.0%
!!! TAAACAAAATTTATTTTAGC+AGG - chr8_1:20906299-20906318 None:intergenic 15.0%
!! AGATATAAGTAACAAAAATA+TGG + chr8_1:20906458-20906477 Msa1184780:intron 15.0%
!!! AAATTTTTGCGATATTTTTT+CGG + chr8_1:20906492-20906511 Msa1184780:intron 15.0%
!! AAGCATAAATTAAACAAATT+TGG + chr8_1:20906576-20906595 Msa1184780:intron 15.0%
!!! TATACTTATAGTTACTTTTA+GGG - chr8_1:20906753-20906772 None:intergenic 15.0%
!!! ATATACTTATAGTTACTTTT+AGG - chr8_1:20906754-20906773 None:intergenic 15.0%
!! AAAAATCTAATAAATATGGA+AGG - chr8_1:20906990-20907009 None:intergenic 15.0%
!!! TATTAGATTTTTTTTACTAC+AGG + chr8_1:20906998-20907017 Msa1184780:intron 15.0%
!!! TTTAATTCTTATTTTTTGAG+AGG + chr8_1:20907226-20907245 Msa1184780:intron 15.0%
!! ATCAGAATATTAAATTACAA+AGG - chr8_1:20907848-20907867 None:intergenic 15.0%
!! ATAATTATGAATATATGCAA+GGG - chr8_1:20907918-20907937 None:intergenic 15.0%
!! AATAATTATGAATATATGCA+AGG - chr8_1:20907919-20907938 None:intergenic 15.0%
!!! TCATTTTTTTTTTTTTTGAG+AGG + chr8_1:20908158-20908177 Msa1184780:intron 15.0%
!!! TAGTGATTGAAAATTTTATA+GGG - chr8_1:20908489-20908508 None:intergenic 15.0%
!!! TGAAGATAGAAATTTTTTTA+GGG + chr8_1:20908804-20908823 Msa1184780:intron 15.0%
!!! AAAAGAATATCTCTAAAAAA+AGG - chr8_1:20909122-20909141 None:intergenic 15.0%
!!! TATATATAAGGTTAAGTTTT+GGG - chr8_1:20910035-20910054 None:intergenic 15.0%
!!! ATATATATAAGGTTAAGTTT+TGG - chr8_1:20910036-20910055 None:intergenic 15.0%
!! ATTAATTAATTCTCTACTAT+GGG + chr8_1:20910138-20910157 Msa1184780:intron 15.0%
!!! AATTTTGAGTTATAAATTGA+GGG + chr8_1:20910479-20910498 Msa1184780:CDS 15.0%
!! TTCACAAACATTAGAAATTA+CGG + chr8_1:20904516-20904535 Msa1184780:CDS 20.0%
!! TAATAGTTACACAACAAAAA+CGG + chr8_1:20904603-20904622 Msa1184780:CDS 20.0%
!!! TTTGAAATGGCAAATTAAAT+GGG - chr8_1:20905370-20905389 None:intergenic 20.0%
!!! ATTTGAAATGGCAAATTAAA+TGG - chr8_1:20905371-20905390 None:intergenic 20.0%
!! TTTGGATTTATTAAATCCAT+AGG + chr8_1:20905507-20905526 Msa1184780:intron 20.0%
!!! AAACTTGAAGTTTGATTTTA+GGG + chr8_1:20905644-20905663 Msa1184780:intron 20.0%
!! TAAACAAATAACTAAACCTT+AGG + chr8_1:20905780-20905799 Msa1184780:intron 20.0%
!!! GTATTTTTGCAACTTATATT+CGG - chr8_1:20906126-20906145 None:intergenic 20.0%
!! ATATAAGTTGCAAAAATACA+AGG + chr8_1:20906127-20906146 Msa1184780:intron 20.0%
!! GTATAAGAAGAATAAAAGTA+AGG + chr8_1:20906162-20906181 Msa1184780:intron 20.0%
!!! GTTTTTCAACAATTTTTTAC+AGG - chr8_1:20906546-20906565 None:intergenic 20.0%
!!! AGAAAGGTTAATTATGTTTT+TGG - chr8_1:20906706-20906725 None:intergenic 20.0%
!!! GCTTTTTTTTTTTTGAAGAA+AGG - chr8_1:20906722-20906741 None:intergenic 20.0%
!! ACGTATTAACACAATAAAAA+GGG - chr8_1:20906812-20906831 None:intergenic 20.0%
!! TACGTATTAACACAATAAAA+AGG - chr8_1:20906813-20906832 None:intergenic 20.0%
!!! TATATTTTGTCCAGAAATAA+TGG + chr8_1:20906935-20906954 Msa1184780:intron 20.0%
!!! GGATTTGATAAGAAAATTTT+CGG + chr8_1:20907123-20907142 Msa1184780:intron 20.0%
!!! TTGTCTTACAAGTTTAATTT+CGG + chr8_1:20907404-20907423 Msa1184780:intron 20.0%
!!! TAAAATTTGTCGTTTGTATA+AGG - chr8_1:20907495-20907514 None:intergenic 20.0%
!! GAAGATTATTCACTATTAAA+CGG + chr8_1:20907561-20907580 Msa1184780:intron 20.0%
!!! CTTTCTTTTTACTATGATAT+TGG - chr8_1:20907603-20907622 None:intergenic 20.0%
!! CAATATCATAGTAAAAAGAA+AGG + chr8_1:20907601-20907620 Msa1184780:intron 20.0%
!!! TGGTTTTTTTATGTGTATTT+TGG + chr8_1:20907670-20907689 Msa1184780:intron 20.0%
!!! TAATTATTCAGAATTTTCAG+AGG + chr8_1:20907931-20907950 Msa1184780:intron 20.0%
!!! TTTTTTTTTTTTGAGAGGAA+TGG + chr8_1:20908163-20908182 Msa1184780:intron 20.0%
!!! TTTTTTTTTTTGAGAGGAAT+GGG + chr8_1:20908164-20908183 Msa1184780:intron 20.0%
!! GTTAATCATGAATAAAGTTA+TGG - chr8_1:20908271-20908290 None:intergenic 20.0%
!!! GTAGTGATTGAAAATTTTAT+AGG - chr8_1:20908490-20908509 None:intergenic 20.0%
!!! AAATTTTCAATCACTACTTT+TGG + chr8_1:20908493-20908512 Msa1184780:intron 20.0%
!! ATATGAGTTTACTTTAAATG+AGG + chr8_1:20908772-20908791 Msa1184780:intron 20.0%
!! TATGAGTTTACTTTAAATGA+GGG + chr8_1:20908773-20908792 Msa1184780:intron 20.0%
!!! AAAATTTCTATCTTCACTTT+TGG - chr8_1:20908800-20908819 None:intergenic 20.0%
!!! GTGAAGATAGAAATTTTTTT+AGG + chr8_1:20908803-20908822 Msa1184780:intron 20.0%
!!! TAACTTTTTTAAAGTTTCAG+AGG + chr8_1:20908962-20908981 Msa1184780:intron 20.0%
!!! ATAGTTTCTATTTTTTTTGG+TGG + chr8_1:20909242-20909261 Msa1184780:intron 20.0%
!!! ATTGATATCAGATAATTTTC+TGG + chr8_1:20909443-20909462 Msa1184780:intron 20.0%
!!! TTATGTTGATAAAACATTGT+AGG - chr8_1:20909472-20909491 None:intergenic 20.0%
!!! ATTTATTTTATCAAATGGAG+AGG - chr8_1:20909606-20909625 None:intergenic 20.0%
!! TCTCCATTTGATAAAATAAA+TGG + chr8_1:20909605-20909624 Msa1184780:intron 20.0%
!!! CTTCCATTTATTTTATCAAA+TGG - chr8_1:20909611-20909630 None:intergenic 20.0%
!! GAAAAATAATTAATGGTGAT+GGG - chr8_1:20909695-20909714 None:intergenic 20.0%
!! TGAAAAATAATTAATGGTGA+TGG - chr8_1:20909696-20909715 None:intergenic 20.0%
!! GATATAGACTCAAAAAAAAT+TGG - chr8_1:20909725-20909744 None:intergenic 20.0%
!! GTAAAAAATAACATAAACAG+TGG + chr8_1:20909830-20909849 Msa1184780:intron 20.0%
!! AACCTTATATATATTCATAC+TGG + chr8_1:20910042-20910061 Msa1184780:intron 20.0%
!! TTCCAGTATGAATATATATA+AGG - chr8_1:20910047-20910066 None:intergenic 20.0%
!! CATTAATTAATTCTCTACTA+TGG + chr8_1:20910137-20910156 Msa1184780:intron 20.0%
!!! GAATTTTGAGTTATAAATTG+AGG + chr8_1:20910478-20910497 Msa1184780:CDS 20.0%
! TTAGAAATTACGGTTATATC+AGG + chr8_1:20904526-20904545 Msa1184780:CDS 25.0%
! TGAAGGAAAATGATAATTGT+GGG + chr8_1:20904626-20904645 Msa1184780:CDS 25.0%
!!! AAAACTCGAGTTTTATTTCA+TGG + chr8_1:20904650-20904669 Msa1184780:CDS 25.0%
!!! AAACTCGAGTTTTATTTCAT+GGG + chr8_1:20904651-20904670 Msa1184780:CDS 25.0%
!!! GAATTTTGAGTTACAAATTG+AGG + chr8_1:20904824-20904843 Msa1184780:intron 25.0%
!! CAAAATGGAGTTATTCATTT+TGG + chr8_1:20904862-20904881 Msa1184780:intron 25.0%
! TGAAATGGAAACATTTGAAA+TGG - chr8_1:20905383-20905402 None:intergenic 25.0%
! TTATTATCAAGAGGTTGAAA+TGG - chr8_1:20905398-20905417 None:intergenic 25.0%
!! TTTCAACCTCTTGATAATAA+TGG + chr8_1:20905398-20905417 Msa1184780:intron 25.0%
!! TTCAACCTCTTGATAATAAT+GGG + chr8_1:20905399-20905418 Msa1184780:intron 25.0%
!!! GAAACTTGAAGTTTGATTTT+AGG + chr8_1:20905643-20905662 Msa1184780:intron 25.0%
! AGAATTCGTAAGATCTAATT+TGG - chr8_1:20906050-20906069 None:intergenic 25.0%
!! GTAAGGGTTAATTATGTTTT+TGG + chr8_1:20906179-20906198 Msa1184780:intron 25.0%
! GTGTTAAGAACGTTATTAAA+AGG - chr8_1:20906522-20906541 None:intergenic 25.0%
! AAACAAATTTGGATTGAGTA+AGG + chr8_1:20906587-20906606 Msa1184780:intron 25.0%
!!! ACAAAATATAAGTGTCGATA+GGG - chr8_1:20906925-20906944 None:intergenic 25.0%
! TTAGAAATCACCATTATTTC+TGG - chr8_1:20906948-20906967 None:intergenic 25.0%
! AGAAATAATGGTGATTTCTA+AGG + chr8_1:20906947-20906966 Msa1184780:intron 25.0%
! AATATACGAAATATAGTGCA+TGG + chr8_1:20907040-20907059 Msa1184780:intron 25.0%
!!! GTGCATGGTTTTATATTTTT+AGG + chr8_1:20907055-20907074 Msa1184780:intron 25.0%
!! AAATTTTCGGAATATTAGCA+AGG + chr8_1:20907136-20907155 Msa1184780:intron 25.0%
!!! ATTCTTATTTTTTGAGAGGA+AGG + chr8_1:20907230-20907249 Msa1184780:intron 25.0%
!! TGTCTTACAAGTTTAATTTC+GGG + chr8_1:20907405-20907424 Msa1184780:intron 25.0%
! TAATAGTGAATAATCTTCGT+TGG - chr8_1:20907559-20907578 None:intergenic 25.0%
!! AAGAAAGGTTTAATTTCTTG+TGG + chr8_1:20907616-20907635 Msa1184780:intron 25.0%
! ACAAATGATAGTCTAGTAAA+TGG + chr8_1:20907809-20907828 Msa1184780:intron 25.0%
! TGCATATATGAAAATCCATT+AGG + chr8_1:20907994-20908013 Msa1184780:intron 25.0%
! AAAACCCAACAATTAAACTT+CGG - chr8_1:20908028-20908047 None:intergenic 25.0%
! AGAGATGAAAAAATTGGTTA+TGG + chr8_1:20908085-20908104 Msa1184780:intron 25.0%
!! TGTTGAAGGAAAATTTTAGA+GGG - chr8_1:20908460-20908479 None:intergenic 25.0%
!! ATGTTGAAGGAAAATTTTAG+AGG - chr8_1:20908461-20908480 None:intergenic 25.0%
! GAAAAGTTGACGTATTTATA+GGG + chr8_1:20908864-20908883 Msa1184780:intron 25.0%
!! TATACAAGCTACTTTAGAAA+GGG - chr8_1:20908907-20908926 None:intergenic 25.0%
!! ATATACAAGCTACTTTAGAA+AGG - chr8_1:20908908-20908927 None:intergenic 25.0%
!!! ATTCTAATCCATTTTTTACG+TGG - chr8_1:20909583-20909602 None:intergenic 25.0%
!! ATAAATGGAAGTACACAATT+TGG + chr8_1:20909620-20909639 Msa1184780:intron 25.0%
! AAAATAACATAAACAGTGGT+CGG + chr8_1:20909834-20909853 Msa1184780:intron 25.0%
!! GTTTCAGTGTATTTGAAATA+TGG - chr8_1:20909953-20909972 None:intergenic 25.0%
!!! TAAGTTTTGGGATTTTGATA+TGG - chr8_1:20910023-20910042 None:intergenic 25.0%
! AGAATGAATGGATATTGTTA+TGG - chr8_1:20910082-20910101 None:intergenic 25.0%
! AAAGATAATGACGATAATTG+TGG + chr8_1:20910279-20910298 Msa1184780:intron 25.0%
! AAGATAATGACGATAATTGT+GGG + chr8_1:20910280-20910299 Msa1184780:intron 25.0%
! AGTTATTCATTTCAGTTTGA+GGG + chr8_1:20910524-20910543 Msa1184780:CDS 25.0%
AGGCGAAAATATTCATGTAA+CGG + chr8_1:20904546-20904565 Msa1184780:CDS 30.0%
GTGAAGGAAAATGATAATTG+TGG + chr8_1:20904625-20904644 Msa1184780:CDS 30.0%
TGAGTTACAAATTGAGGAAT+TGG + chr8_1:20904830-20904849 Msa1184780:intron 30.0%
GAGTTACAAATTGAGGAATT+GGG + chr8_1:20904831-20904850 Msa1184780:intron 30.0%
!! AGTTATTCATTTTGGTGTGA+GGG + chr8_1:20904870-20904889 Msa1184780:intron 30.0%
!! AACTCTAATGGTGTTGTTAT+TGG + chr8_1:20904997-20905016 Msa1184780:intron 30.0%
!! TTGTTATTGGTATTCCGTTT+TGG + chr8_1:20905010-20905029 Msa1184780:intron 30.0%
!! TACTGGTTTAGGAACTTAAA+AGG - chr8_1:20905151-20905170 None:intergenic 30.0%
! ATCCACTAAACTTGTTTAAC+CGG - chr8_1:20905175-20905194 None:intergenic 30.0%
GAAATTGTTGAAGATAAGCT+TGG - chr8_1:20905314-20905333 None:intergenic 30.0%
! CTTTTCCCATTATTATCAAG+AGG - chr8_1:20905407-20905426 None:intergenic 30.0%
AATAAAAACCTGTCAATGCT+TGG - chr8_1:20905483-20905502 None:intergenic 30.0%
!!! GACAGGTTTTTATTTTGCTT+TGG + chr8_1:20905489-20905508 Msa1184780:intron 30.0%
ATGCATATACTCATAACCTA+TGG - chr8_1:20905526-20905545 None:intergenic 30.0%
!!! TTCGGGAAAGATTTGTTTTT+TGG + chr8_1:20905595-20905614 Msa1184780:intron 30.0%
AACACAATTACTTGTTTACC+TGG - chr8_1:20905807-20905826 None:intergenic 30.0%
!! TGTGATACATACAAGTTGAT+CGG + chr8_1:20905979-20905998 Msa1184780:intron 30.0%
AAGTAAGGACTAAACTTACA+AGG - chr8_1:20906663-20906682 None:intergenic 30.0%
!!! TTTTTGCGATATTTTTTCGG+AGG + chr8_1:20906495-20906514 Msa1184780:intron 30.0%
!!! TGAGTGCAGAAATTTTTTGT+AGG + chr8_1:20906618-20906637 Msa1184780:intron 30.0%
!!! GAGTGCAGAAATTTTTTGTA+GGG + chr8_1:20906619-20906638 Msa1184780:intron 30.0%
! TTACAAAGTCGCAATTTTGT+AGG + chr8_1:20906678-20906697 Msa1184780:intron 30.0%
! TACAAAGTCGCAATTTTGTA+GGG + chr8_1:20906679-20906698 Msa1184780:intron 30.0%
! GTAACTTCAGATTCTTTTTG+TGG - chr8_1:20906873-20906892 None:intergenic 30.0%
!! GACAAAATATAAGTGTCGAT+AGG - chr8_1:20906926-20906945 None:intergenic 30.0%
TGAGATGAAAATGTTAGAAG+AGG + chr8_1:20907088-20907107 Msa1184780:intron 30.0%
ATACGATTGTTTGTCATCAT+TGG - chr8_1:20907279-20907298 None:intergenic 30.0%
! CAATGATGAATTGGTCTAAA+TGG + chr8_1:20907431-20907450 Msa1184780:intron 30.0%
GATTATTCACTATTAAACGG+TGG + chr8_1:20907564-20907583 Msa1184780:intron 30.0%
ACATAAATGGTTACGATTTG+TGG + chr8_1:20907650-20907669 Msa1184780:intron 30.0%
TGAAATTAACCCCTCTAAAT+GGG - chr8_1:20908141-20908160 None:intergenic 30.0%
ATGAAATTAACCCCTCTAAA+TGG - chr8_1:20908142-20908161 None:intergenic 30.0%
GTCTTTAGACAACATTTGTA+CGG - chr8_1:20908349-20908368 None:intergenic 30.0%
TTATAGGGACTAAATGTTGA+AGG - chr8_1:20908474-20908493 None:intergenic 30.0%
!! TTTTAGGGACTAAAAGTTGA+AGG + chr8_1:20908819-20908838 Msa1184780:intron 30.0%
TTTAGGGACTAAAAGTTGAA+GGG + chr8_1:20908820-20908839 Msa1184780:intron 30.0%
! AAGTTGAAGGGAAATTTTTG+AGG + chr8_1:20908832-20908851 Msa1184780:intron 30.0%
! AGTTGAAGGGAAATTTTTGA+GGG + chr8_1:20908833-20908852 Msa1184780:intron 30.0%
CGAAAAGTTGACGTATTTAT+AGG + chr8_1:20908863-20908882 Msa1184780:intron 30.0%
GCTTGTATATATTAAGCTAC+TGG + chr8_1:20908918-20908937 Msa1184780:intron 30.0%
!!! GTTTCTATTTTTTTTGGTGG+TGG + chr8_1:20909245-20909264 Msa1184780:intron 30.0%
TATCTCTCCAATTAGAGAAA+TGG + chr8_1:20909741-20909760 Msa1184780:intron 30.0%
ATCTTCTCCATTTCTCTAAT+TGG - chr8_1:20909751-20909770 None:intergenic 30.0%
GAAATGGAGAAGATACAAAA+TGG + chr8_1:20909757-20909776 Msa1184780:intron 30.0%
GAAAGAAATACGAGTGTAAT+TGG - chr8_1:20909982-20910001 None:intergenic 30.0%
TCATACTGGAACAAAGTTTA+TGG + chr8_1:20910056-20910075 Msa1184780:intron 30.0%
TTAGCTAGTGTAAGAATGAA+TGG - chr8_1:20910094-20910113 None:intergenic 30.0%
TTAGAAATCACGGTTATATC+CGG + chr8_1:20910177-20910196 Msa1184780:intron 30.0%
! AAAATTCGAGTTTCCTTTCA+TGG + chr8_1:20910304-20910323 Msa1184780:intron 30.0%
AAAACTTCTCATTCCATGAA+AGG - chr8_1:20910320-20910339 None:intergenic 30.0%
!! TTTAAAAGTGTTCGTCCTAT+TGG + chr8_1:20910396-20910415 Msa1184780:CDS 30.0%
!! TTAAAAGTGTTCGTCCTATT+GGG + chr8_1:20910397-20910416 Msa1184780:CDS 30.0%
!! GCCGTTTTGGATATTTTAAA+CGG + chr8_1:20910432-20910451 Msa1184780:CDS 30.0%
! CCCGTTTAAAATATCCAAAA+CGG - chr8_1:20910436-20910455 None:intergenic 30.0%
!! CCGTTTTGGATATTTTAAAC+GGG + chr8_1:20910433-20910452 Msa1184780:CDS 30.0%
!! CGTTTTGGATATTTTAAACG+GGG + chr8_1:20910434-20910453 Msa1184780:CDS 30.0%
!! TATTTTAAACGGGGATGAAT+CGG + chr8_1:20910443-20910462 Msa1184780:CDS 30.0%
TGAGTTATAAATTGAGGGAT+TGG + chr8_1:20910484-20910503 Msa1184780:CDS 30.0%
GAGTTATAAATTGAGGGATT+GGG + chr8_1:20910485-20910504 Msa1184780:CDS 30.0%
GAGTTATTCATTTCAGTTTG+AGG + chr8_1:20910523-20910542 Msa1184780:CDS 30.0%
CGAAAATATTCATGTAACGG+AGG + chr8_1:20904549-20904568 Msa1184780:CDS 35.0%
TTACACAACAAAAACGGTGA+AGG + chr8_1:20904609-20904628 Msa1184780:CDS 35.0%
!! TTCAAAGGTATTCGACCTAT+TGG + chr8_1:20904742-20904761 Msa1184780:intron 35.0%
!! TCAAAGGTATTCGACCTATT+GGG + chr8_1:20904743-20904762 Msa1184780:intron 35.0%
GCTCTTTCAGATATTCTCAA+TGG + chr8_1:20904778-20904797 Msa1184780:intron 35.0%
TACAAATTGAGGAATTGGGA+AGG + chr8_1:20904835-20904854 Msa1184780:intron 35.0%
ACAAATTGAGGAATTGGGAA+GGG + chr8_1:20904836-20904855 Msa1184780:intron 35.0%
!! GAGTTATTCATTTTGGTGTG+AGG + chr8_1:20904869-20904888 Msa1184780:intron 35.0%
ATGGAAAGAATTATGGTGGT+CGG + chr8_1:20904947-20904966 Msa1184780:intron 35.0%
AACAACACCATTAGAGTTCT+TGG - chr8_1:20904995-20905014 None:intergenic 35.0%
! TTATTGGTATTCCGTTTTGG+TGG + chr8_1:20905013-20905032 Msa1184780:intron 35.0%
TTTGGGTAATTCCACCAAAA+CGG - chr8_1:20905027-20905046 None:intergenic 35.0%
TAAGTTCCTAAACCAGTAAC+CGG + chr8_1:20905153-20905172 Msa1184780:intron 35.0%
! AAACTTGTTTAACCGGTTAC+TGG - chr8_1:20905168-20905187 None:intergenic 35.0%
AACCGGTTAAACAAGTTTAG+TGG + chr8_1:20905170-20905189 Msa1184780:intron 35.0%
TATTGCCCACAGTGAAATTT+CGG + chr8_1:20905577-20905596 Msa1184780:intron 35.0%
! GGTTGATCTTTAGCTGATTT+AGG + chr8_1:20905616-20905635 Msa1184780:intron 35.0%
GAACTGAGAAAGAAAGATCT+GGG - chr8_1:20905695-20905714 None:intergenic 35.0%
TGAACTGAGAAAGAAAGATC+TGG - chr8_1:20905696-20905715 None:intergenic 35.0%
AATAACTAAACCTTAGGACC+AGG + chr8_1:20905786-20905805 Msa1184780:intron 35.0%
TGTTTGAAAAACGTATGACG+TGG + chr8_1:20905823-20905842 Msa1184780:intron 35.0%
! ATCAGTTGCTATTACACTCT+CGG - chr8_1:20905873-20905892 None:intergenic 35.0%
!! GTGATACATACAAGTTGATC+GGG + chr8_1:20905980-20905999 Msa1184780:intron 35.0%
! TACAAGGTCGCAATTTTGTA+GGG - chr8_1:20906206-20906225 None:intergenic 35.0%
! TTACAAGGTCGCAATTTTGT+AGG - chr8_1:20906207-20906226 None:intergenic 35.0%
! GATAGGGTTTTCATCTAGTA+GGG - chr8_1:20906909-20906928 None:intergenic 35.0%
TTAGAAGAGGATTTGAGCAA+TGG + chr8_1:20907101-20907120 Msa1184780:intron 35.0%
TAGAAGAGGATTTGAGCAAT+GGG + chr8_1:20907102-20907121 Msa1184780:intron 35.0%
! GGTTTAATTTCTTGTGGCAT+TGG + chr8_1:20907622-20907641 Msa1184780:intron 35.0%
TTGCTTGTGAATACTTTCGT+TGG + chr8_1:20907870-20907889 Msa1184780:intron 35.0%
TGCTTGTGAATACTTTCGTT+GGG + chr8_1:20907871-20907890 Msa1184780:intron 35.0%
ACTCTCCGAAGTTTAATTGT+TGG + chr8_1:20908020-20908039 Msa1184780:intron 35.0%
CTCTCCGAAGTTTAATTGTT+GGG + chr8_1:20908021-20908040 Msa1184780:intron 35.0%
CCTTCTAATCGAATAATGCT+TGG - chr8_1:20908053-20908072 None:intergenic 35.0%
CCAAGCATTATTCGATTAGA+AGG + chr8_1:20908050-20908069 Msa1184780:intron 35.0%
CGTGTGAGAGATGAAAAAAT+TGG + chr8_1:20908079-20908098 Msa1184780:intron 35.0%
AATACTCATGTCCCATTTAG+AGG + chr8_1:20908127-20908146 Msa1184780:intron 35.0%
ATACTCATGTCCCATTTAGA+GGG + chr8_1:20908128-20908147 Msa1184780:intron 35.0%
GAGGGATTAAAACGAAAAGT+TGG - chr8_1:20908442-20908461 None:intergenic 35.0%
! ACAATTTTCAGTAGCTTCTC+AGG + chr8_1:20909092-20909111 Msa1184780:intron 35.0%
! GAAACTTTCTATTTTGTCCC+CGG - chr8_1:20909271-20909290 None:intergenic 35.0%
CGTATTCTCCACGTAAAAAA+TGG + chr8_1:20909572-20909591 Msa1184780:intron 35.0%
TAGTGAATCCTATCACTAAG+TGG + chr8_1:20909667-20909686 Msa1184780:intron 35.0%
!! ATACGAGTGTAATTGGTTTG+TGG - chr8_1:20909975-20909994 None:intergenic 35.0%
ATGGAAAGTGATGAGAAAGA+GGG - chr8_1:20910004-20910023 None:intergenic 35.0%
TATGGAAAGTGATGAGAAAG+AGG - chr8_1:20910005-20910024 None:intergenic 35.0%
TTAATTCTCTACTATGGGTG+TGG + chr8_1:20910143-20910162 Msa1184780:intron 35.0%
CTCACGTACATTAGAAATCA+CGG + chr8_1:20910167-20910186 Msa1184780:intron 35.0%
! GGTTACATGAATATTTTCGC+CGG - chr8_1:20910199-20910218 None:intergenic 35.0%
CGAAAATATTCATGTAACCG+AGG + chr8_1:20910200-20910219 Msa1184780:intron 35.0%
!! TAAAAGTGTTCGTCCTATTG+GGG + chr8_1:20910398-20910417 Msa1184780:CDS 35.0%
TATAAATTGAGGGATTGGGA+AGG + chr8_1:20910489-20910508 Msa1184780:CDS 35.0%
ATAAATTGAGGGATTGGGAA+GGG + chr8_1:20910490-20910509 Msa1184780:CDS 35.0%
TATTCATTTCAGTTTGAGGG+TGG + chr8_1:20910527-20910546 Msa1184780:CDS 35.0%
AATTATGGTGGTCGATTAAC+TGG + chr8_1:20910609-20910628 Msa1184780:CDS 35.0%
!! AACTCTAATGGTGTTGCTAT+TGG + chr8_1:20910651-20910670 Msa1184780:CDS 35.0%
!! TTGCTATTGGTATTCCCTTT+TGG + chr8_1:20910664-20910683 Msa1184780:CDS 35.0%
TTTGGGTAATTCCACCAAAA+GGG - chr8_1:20905027-20905046 None:intergenic 35.0%
! GTGCACTAAGTTTTCTACCA+TGG + chr8_1:20904486-20904505 Msa1184780:exon 40.0%
TGTTTGTGAAGCTACAACCA+TGG - chr8_1:20904506-20904525 None:intergenic 40.0%
GTGCAATGCAAGAAGTTCAA+AGG + chr8_1:20904727-20904746 Msa1184780:intron 40.0%
!! CAAAGGTATTCGACCTATTG+GGG + chr8_1:20904744-20904763 Msa1184780:intron 40.0%
TTCAGATATTCTCAATGGCG+CGG + chr8_1:20904783-20904802 Msa1184780:intron 40.0%
!! TATTCATTTTGGTGTGAGGG+TGG + chr8_1:20904873-20904892 Msa1184780:intron 40.0%
AATTATGGTGGTCGGTTAAC+TGG + chr8_1:20904955-20904974 Msa1184780:intron 40.0%
TTAGACACTCTCTCTAGTAG+AGG + chr8_1:20905112-20905131 Msa1184780:intron 40.0%
TAGACACTCTCTCTAGTAGA+GGG + chr8_1:20905113-20905132 Msa1184780:intron 40.0%
AACTTAAAAGGCAAGTGACG+TGG - chr8_1:20905139-20905158 None:intergenic 40.0%
!! GTTTAACCGGTTACTGGTTT+AGG - chr8_1:20905162-20905181 None:intergenic 40.0%
AGCAACAATGGAGATTGAAG+AGG - chr8_1:20905278-20905297 None:intergenic 40.0%
ATCTCCATTGTTGCTGTAGA+AGG + chr8_1:20905283-20905302 Msa1184780:intron 40.0%
GACGAAGAAGAATTCGAGAT+GGG - chr8_1:20905457-20905476 None:intergenic 40.0%
TGACGAAGAAGAATTCGAGA+TGG - chr8_1:20905458-20905477 None:intergenic 40.0%
ATTGCCCACAGTGAAATTTC+GGG + chr8_1:20905578-20905597 Msa1184780:intron 40.0%
CTTTCCCGAAATTTCACTGT+GGG - chr8_1:20905585-20905604 None:intergenic 40.0%
TCTTTCCCGAAATTTCACTG+TGG - chr8_1:20905586-20905605 None:intergenic 40.0%
CAAAATCATAGCTTCTGCGA+CGG - chr8_1:20905721-20905740 None:intergenic 40.0%
TACTTGTTTACCTGGTCCTA+AGG - chr8_1:20905799-20905818 None:intergenic 40.0%
! TAAACACTCTTCCGCTGATT+CGG - chr8_1:20905849-20905868 None:intergenic 40.0%
! CGATAGGGTTTTCATCTAGT+AGG - chr8_1:20906910-20906929 None:intergenic 40.0%
! TGTAAGACAAGTTAGTCTCG+TGG - chr8_1:20907394-20907413 None:intergenic 40.0%
TTCGGGTGACAATGATGAAT+TGG + chr8_1:20907422-20907441 Msa1184780:intron 40.0%
TGGTAAGTCCCTTATACATG+TGG + chr8_1:20907451-20907470 Msa1184780:intron 40.0%
ACTCCTGACCACATGTATAA+GGG - chr8_1:20907462-20907481 None:intergenic 40.0%
AACTCCTGACCACATGTATA+AGG - chr8_1:20907463-20907482 None:intergenic 40.0%
! GGCATTGGAACACACATAAA+TGG + chr8_1:20907637-20907656 Msa1184780:intron 40.0%
TCATATATGCAAGCTGTGTC+TGG - chr8_1:20907985-20908004 None:intergenic 40.0%
TACTCATGTCCCATTTAGAG+GGG + chr8_1:20908129-20908148 Msa1184780:intron 40.0%
!!! CTATTTTTTTTGGTGGTGGC+CGG + chr8_1:20909249-20909268 Msa1184780:intron 40.0%
!!! TATTTTTTTTGGTGGTGGCC+GGG + chr8_1:20909250-20909269 Msa1184780:intron 40.0%
TCAAAATAGCTAAGCTCACG+AGG + chr8_1:20909293-20909312 Msa1184780:intron 40.0%
GTTGCATGCGCTGTTTATAA+TGG - chr8_1:20909861-20909880 None:intergenic 40.0%
TAAGTTGCAGACAAATTCCG+CGG - chr8_1:20909883-20909902 None:intergenic 40.0%
CGTGATTTCTAATGTACGTG+AGG - chr8_1:20910169-20910188 None:intergenic 40.0%
TAGTTGTTACACGACGAAGA+CGG + chr8_1:20910254-20910273 Msa1184780:intron 40.0%
GTCGTGCATGGAAAGAATTA+TGG + chr8_1:20910594-20910613 Msa1184780:CDS 40.0%
GTGCATGGAAAGAATTATGG+TGG + chr8_1:20910597-20910616 Msa1184780:CDS 40.0%
CGATTAACTGGAATGGATGT+TGG + chr8_1:20910621-20910640 Msa1184780:CDS 40.0%
!! GTTGGTGTCAAGAACTCTAA+TGG + chr8_1:20910639-20910658 Msa1184780:CDS 40.0%
! CTATTGGTATTCCCTTTTGG+TGG + chr8_1:20910667-20910686 Msa1184780:CDS 40.0%
GTTTGGGTAATTCCACCAAA+AGG - chr8_1:20905028-20905047 None:intergenic 40.0%
! GATGCATACGTTGTTGTTCG+AGG + chr8_1:20904571-20904590 Msa1184780:CDS 45.0%
TGAACATGCCATTGCATGCA+AGG + chr8_1:20904689-20904708 Msa1184780:CDS 45.0%
GTGATTGACCTTGCATGCAA+TGG - chr8_1:20904700-20904719 None:intergenic 45.0%
TGCAAGGTCAATCACGTTTG+AGG + chr8_1:20904705-20904724 Msa1184780:intron 45.0%
TATTCTCAATGGCGCGGTAT+CGG + chr8_1:20904789-20904808 Msa1184780:intron 45.0%
AATTGAGGAATTGGGAAGGG+AGG + chr8_1:20904839-20904858 Msa1184780:intron 45.0%
AATTGGGAAGGGAGGCAAAA+TGG + chr8_1:20904847-20904866 Msa1184780:intron 45.0%
TCGGTAACTGATCTTTGCTC+CGG - chr8_1:20904904-20904923 None:intergenic 45.0%
!! GTGGCGGATGGAAAGAATTA+TGG + chr8_1:20904940-20904959 Msa1184780:intron 45.0%
GCGGATGGAAAGAATTATGG+TGG + chr8_1:20904943-20904962 Msa1184780:intron 45.0%
CGGTTAACTGGAATGGATGT+TGG + chr8_1:20904967-20904986 Msa1184780:intron 45.0%
!! GTTGGTGCCAAGAACTCTAA+TGG + chr8_1:20904985-20905004 Msa1184780:intron 45.0%
GGAGATTGAAGAGGTTGAAC+CGG - chr8_1:20905269-20905288 None:intergenic 45.0%
CCTTCCTTCTACAGCAACAA+TGG - chr8_1:20905290-20905309 None:intergenic 45.0%
CCATTGTTGCTGTAGAAGGA+AGG + chr8_1:20905287-20905306 Msa1184780:intron 45.0%
!! TCGTCATTCCAAGCATTGAC+AGG + chr8_1:20905472-20905491 Msa1184780:intron 45.0%
! CGTCGCAGAAGCTATGATTT+TGG + chr8_1:20905719-20905738 Msa1184780:intron 45.0%
TCGGCACACATATCTTGCAA+TGG - chr8_1:20906107-20906126 None:intergenic 45.0%
AGTCCCTTATACATGTGGTC+AGG + chr8_1:20907456-20907475 Msa1184780:intron 45.0%
GTAAACCTGCAGAACACACA+AGG - chr8_1:20907537-20907556 None:intergenic 45.0%
! ACTTCGGAGAGTGTACCTAA+TGG - chr8_1:20908012-20908031 None:intergenic 45.0%
!!! ATTTTTTTTGGTGGTGGCCG+GGG + chr8_1:20909251-20909270 Msa1184780:intron 45.0%
GATGGGATCCACTTAGTGAT+AGG - chr8_1:20909678-20909697 None:intergenic 45.0%
AACGACGACATATGCATCCT+CGG - chr8_1:20910220-20910239 None:intergenic 45.0%
TGAACATGCCATTGCATGCA+AGG + chr8_1:20904689-20904708 Msa1184780:CDS 45.0%
GTGATTGACCTTGCATGCAA+TGG - chr8_1:20904700-20904719 None:intergenic 45.0%
TGCAAGGTCAATCACGTTTG+AGG + chr8_1:20904705-20904724 Msa1184780:intron 45.0%
GATTGGGAAGGGAAGCAAAA+TGG + chr8_1:20910501-20910520 Msa1184780:CDS 45.0%
TGGTGGTCGATTAACTGGAA+TGG + chr8_1:20910614-20910633 Msa1184780:CDS 45.0%
!! TAAATATTTAAATAATGTTT+GGG - chr8_1:20905044-20905063 None:intergenic 5.0%
!! ATAAATATTTAAATAATGTT+TGG - chr8_1:20905045-20905064 None:intergenic 5.0%
!! TATATTAATATATTACTATT+AGG + chr8_1:20906769-20906788 Msa1184780:intron 5.0%
!! TAAAAAAAATCTAATAAATA+TGG - chr8_1:20906994-20907013 None:intergenic 5.0%
!!! AATAGTTTTTTTTTTTTTAA+AGG + chr8_1:20908385-20908404 Msa1184780:intron 5.0%
!!! ATAGTTTTTTTTTTTTTAAA+GGG + chr8_1:20908386-20908405 Msa1184780:intron 5.0%
!!! TAAAAAAATTCTATTTTTTT+GGG - chr8_1:20908597-20908616 None:intergenic 5.0%
!!! TAAAAAATTCTAATTTTTTT+TGG + chr8_1:20908687-20908706 Msa1184780:intron 5.0%
!!! AAAAAATTCTAATTTTTTTT+GGG + chr8_1:20908688-20908707 Msa1184780:intron 5.0%
!!! TTTTTTTTTTTGAAAAAAAA+TGG + chr8_1:20909792-20909811 Msa1184780:intron 5.0%
AGGTATTCGACCTATTGGGG+TGG + chr8_1:20904747-20904766 Msa1184780:intron 50.0%
GCAATTCTTGCCACCCCAAT+AGG - chr8_1:20904760-20904779 None:intergenic 50.0%
GGAGCAAAGATCAGTTACCG+AGG + chr8_1:20904903-20904922 Msa1184780:intron 50.0%
GCAAAGATCAGTTACCGAGG+CGG + chr8_1:20904906-20904925 Msa1184780:intron 50.0%
TGGTGGTCGGTTAACTGGAA+TGG + chr8_1:20904960-20904979 Msa1184780:intron 50.0%
CACAGTCACTCTTGCACTCT+CGG + chr8_1:20905089-20905108 Msa1184780:intron 50.0%
GTGCCTTGTCGTTGTGATGT+TGG + chr8_1:20905666-20905685 Msa1184780:intron 50.0%
CCACCAACATCACAACGACA+AGG - chr8_1:20905672-20905691 None:intergenic 50.0%
CCTTGTCGTTGTGATGTTGG+TGG + chr8_1:20905669-20905688 Msa1184780:intron 50.0%
ACCTGCAGAACACACAAGGT+GGG - chr8_1:20907533-20907552 None:intergenic 50.0%
AACCTGCAGAACACACAAGG+TGG - chr8_1:20907534-20907553 None:intergenic 50.0%
ATAAACAGCGCATGCAACCG+CGG + chr8_1:20909863-20909882 Msa1184780:intron 50.0%
GATGCATATGTCGTCGTTCG+AGG + chr8_1:20910222-20910241 Msa1184780:intron 50.0%
AAGTGTTCGTCCTATTGGGG+TGG + chr8_1:20910401-20910420 Msa1184780:CDS 50.0%
GCAATTCTTGCCACCCCAAT+AGG - chr8_1:20904760-20904779 None:intergenic 50.0%
!! GGTGGCAAGAATTGCCGTTT+TGG + chr8_1:20910419-20910438 Msa1184780:CDS 50.0%
ACGGTAACCGATCTTTGCTC+CGG - chr8_1:20910558-20910577 None:intergenic 50.0%
! TACCGTGGTGGAGAAGCAAA+CGG + chr8_1:20910572-20910591 Msa1184780:CDS 50.0%
TGGTGTGAGGGTGGTTCTTC+CGG + chr8_1:20904882-20904901 Msa1184780:intron 55.0%
TACCGAGGCGGAGAACCAAA+CGG + chr8_1:20904918-20904937 Msa1184780:intron 55.0%
TCTTTCCATCCGCCACCGTT+TGG - chr8_1:20904936-20904955 None:intergenic 55.0%
! CGAGAGTGCAAGAGTGACTG+TGG - chr8_1:20905091-20905110 None:intergenic 55.0%
ACTGCGTGCGAAAAGAACGC+CGG + chr8_1:20905247-20905266 Msa1184780:intron 55.0%
GTATGACGTGGCCGAATCAG+CGG + chr8_1:20905835-20905854 Msa1184780:intron 55.0%
ACCCACCTTGTGTGTTCTGC+AGG + chr8_1:20907529-20907548 Msa1184780:intron 55.0%
CGTGGAGAATACGTGCTGAG+CGG - chr8_1:20909565-20909584 None:intergenic 55.0%
CAGTTTGAGGGTGGTTGTGC+CGG + chr8_1:20910536-20910555 Msa1184780:CDS 55.0%
GGTTGTGCCGGAGCAAAGAT+CGG + chr8_1:20910548-20910567 Msa1184780:CDS 55.0%
GGAGCAAAGATCGGTTACCG+TGG + chr8_1:20910557-20910576 Msa1184780:CDS 55.0%
GCAAAGATCGGTTACCGTGG+TGG + chr8_1:20910560-20910579 Msa1184780:CDS 55.0%
GACCGTTTGCTTCTCCACCA+CGG - chr8_1:20910577-20910596 None:intergenic 55.0%
GAGAAGCAAACGGTCGTGCA+TGG + chr8_1:20910582-20910601 Msa1184780:CDS 55.0%
!! CACCGTTTGGTTCTCCGCCT+CGG - chr8_1:20904923-20904942 None:intergenic 60.0%
!! GAGAACCAAACGGTGGCGGA+TGG + chr8_1:20904928-20904947 Msa1184780:intron 60.0%
CGAGGCGGAGAACCAAACGG+TGG + chr8_1:20904921-20904940 Msa1184780:intron 65.0%
GGCGGAGAACCAAACGGTGG+CGG + chr8_1:20904924-20904943 Msa1184780:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 20904434 20910710 20904434 ID=Msa1184780;Name=Msa1184780
chr8_1 mRNA 20904434 20910710 20904434 ID=Msa1184780-mRNA-1;Parent=Msa1184780;Name=Msa1184780-mRNA-1;_AED=0.33;_eAED=0.34;_QI=71|1|0.5|1|0|0|2|0|183
chr8_1 exon 20904434 20904710 20904434 ID=Msa1184780-mRNA-1:exon:7952;Parent=Msa1184780-mRNA-1
chr8_1 exon 20910365 20910710 20910365 ID=Msa1184780-mRNA-1:exon:7953;Parent=Msa1184780-mRNA-1
chr8_1 five_prime_UTR 20904434 20904504 20904434 ID=Msa1184780-mRNA-1:five_prime_utr;Parent=Msa1184780-mRNA-1
chr8_1 CDS 20904505 20904710 20904505 ID=Msa1184780-mRNA-1:cds;Parent=Msa1184780-mRNA-1
chr8_1 CDS 20910365 20910710 20910365 ID=Msa1184780-mRNA-1:cds;Parent=Msa1184780-mRNA-1
Gene Sequence

>Msa1184780

ATGGTTGTAGCTTCACAAACATTAGAAATTACGGTTATATCAGGCGAAAATATTCATGTAACGGAGGATGCATACGTTGTTGTTCGAGGCGAGTCTCTTAATAGTTACACAACAAAAACGGTGAAGGAAAATGATAATTGTGGGAAAAACTCGAGTTTTATTTCATGGGATGAGAAATTTTTGTTGAACATGCCATTGCATGCAAGGTCAATCACGTTTGAGGTGCAATGCAAGAAGTTTAAAAGTGTTCGTCCTATTGGGGTGGCAAGAATTGCCGTTTTGGATATTTTAAACGGGGATGAATCGGAAAATTGTTCGCGAATTTTGAGTTATAAATTGAGGGATTGGGAAGGGAAGCAAAATGGAGTTATTCATTTCAGTTTGAGGGTGGTTGTGCCGGAGCAAAGATCGGTTACCGTGGTGGAGAAGCAAACGGTCGTGCATGGAAAGAATTATGGTGGTCGATTAACTGGAATGGATGTTGGTGTCAAGAACTCTAATGGTGTTGCTATTGGTATTCCCTTTTGGTGGAATTACCCAAACATTATTTAA

Protein sequence

>Msa1184780

MVVASQTLEITVISGENIHVTEDAYVVVRGESLNSYTTKTVKENDNCGKNSSFISWDEKFLLNMPLHARSITFEVQCKKFKSVRPIGVARIAVLDILNGDESENCSRILSYKLRDWEGKQNGVIHFSLRVVVPEQRSVTVVEKQTVVHGKNYGGRLTGMDVGVKNSNGVAIGIPFWWNYPNII*