Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1184780 | XP_013444917.1 | 87.978 | 183 | 22 | 0 | 1 | 183 | 1 | 183 | 3.42e-116 | 337 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1184780 | A0A072TNG9 | 87.978 | 183 | 22 | 0 | 1 | 183 | 1 | 183 | 1.63e-116 | 337 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0004480 | Msa1184780 | 0.819580 | 1.078108e-52 | -8.615850e-47 |
Msa0017320 | Msa1184780 | 0.830470 | 2.883712e-55 | -8.615850e-47 |
Msa0030480 | Msa1184780 | 0.830511 | 2.818808e-55 | -8.615850e-47 |
Msa0030530 | Msa1184780 | 0.809996 | 1.435813e-50 | -8.615850e-47 |
Msa0043850 | Msa1184780 | 0.816616 | 5.044665e-52 | -8.615850e-47 |
Msa0071480 | Msa1184780 | 0.802720 | 4.907514e-49 | -8.615850e-47 |
Msa0081940 | Msa1184780 | 0.837096 | 6.358947e-57 | -8.615850e-47 |
Msa0082050 | Msa1184780 | 0.837879 | 4.004692e-57 | -8.615850e-47 |
Msa0090510 | Msa1184780 | 0.825614 | 4.257495e-54 | -8.615850e-47 |
Msa0102140 | Msa1184780 | 0.813706 | 2.235151e-51 | -8.615850e-47 |
Msa0111080 | Msa1184780 | 0.814433 | 1.544826e-51 | -8.615850e-47 |
Msa0119440 | Msa1184780 | 0.840119 | 1.053508e-57 | -8.615850e-47 |
Msa0641340 | Msa1184780 | 0.814911 | 1.210490e-51 | -8.615850e-47 |
Msa0689780 | Msa1184780 | 0.815481 | 9.041106e-52 | -8.615850e-47 |
Msa0705990 | Msa1184780 | 0.826397 | 2.775167e-54 | -8.615850e-47 |
Msa0709120 | Msa1184780 | 0.843389 | 1.444369e-58 | -8.615850e-47 |
Msa0721340 | Msa1184780 | 0.819632 | 1.048717e-52 | -8.615850e-47 |
Msa0724370 | Msa1184780 | 0.804281 | 2.329082e-49 | -8.615850e-47 |
Msa0743870 | Msa1184780 | 0.837895 | 3.967492e-57 | -8.615850e-47 |
Msa0750810 | Msa1184780 | 0.819731 | 9.958215e-53 | -8.615850e-47 |
Msa0758250 | Msa1184780 | 0.812854 | 3.437622e-51 | -8.615850e-47 |
Msa0764920 | Msa1184780 | 0.843841 | 1.093260e-58 | -8.615850e-47 |
Msa0775560 | Msa1184780 | 0.807910 | 4.012297e-50 | -8.615850e-47 |
Msa0794210 | Msa1184780 | 0.806430 | 8.258787e-50 | -8.615850e-47 |
Msa0812950 | Msa1184780 | 0.838335 | 3.057368e-57 | -8.615850e-47 |
Msa0813260 | Msa1184780 | 0.811058 | 8.465785e-51 | -8.615850e-47 |
Msa0128430 | Msa1184780 | 0.831540 | 1.575419e-55 | -8.615850e-47 |
Msa0136630 | Msa1184780 | 0.835758 | 1.392882e-56 | -8.615850e-47 |
Msa0139670 | Msa1184780 | 0.842797 | 2.075765e-58 | -8.615850e-47 |
Msa0152560 | Msa1184780 | 0.821335 | 4.265759e-53 | -8.615850e-47 |
Msa0154920 | Msa1184780 | 0.810066 | 1.386801e-50 | -8.615850e-47 |
Msa0162690 | Msa1184780 | 0.828556 | 8.421175e-55 | -8.615850e-47 |
Msa0183910 | Msa1184780 | 0.825607 | 4.274190e-54 | -8.615850e-47 |
Msa0187310 | Msa1184780 | 0.819566 | 1.085925e-52 | -8.615850e-47 |
Msa0187490 | Msa1184780 | 0.800651 | 1.303832e-48 | -8.615850e-47 |
Msa0194010 | Msa1184780 | 0.810509 | 1.112754e-50 | -8.615850e-47 |
Msa0213430 | Msa1184780 | 0.841919 | 3.547210e-58 | -8.615850e-47 |
Msa0233370 | Msa1184780 | 0.808167 | 3.537102e-50 | -8.615850e-47 |
Msa0235880 | Msa1184780 | 0.823428 | 1.392539e-53 | -8.615850e-47 |
Msa0364790 | Msa1184780 | 0.830251 | 3.263340e-55 | -8.615850e-47 |
Msa0380600 | Msa1184780 | 0.837747 | 4.329730e-57 | -8.615850e-47 |
Msa0382370 | Msa1184780 | 0.813895 | 2.030113e-51 | -8.615850e-47 |
Msa0403490 | Msa1184780 | 0.840607 | 7.852687e-58 | -8.615850e-47 |
Msa0403770 | Msa1184780 | 0.812226 | 4.716726e-51 | -8.615850e-47 |
Msa0418400 | Msa1184780 | 0.837157 | 6.134135e-57 | -8.615850e-47 |
Msa0427580 | Msa1184780 | 0.827623 | 1.412615e-54 | -8.615850e-47 |
Msa0430240 | Msa1184780 | 0.835715 | 1.428030e-56 | -8.615850e-47 |
Msa0432160 | Msa1184780 | 0.800135 | 1.661492e-48 | -8.615850e-47 |
Msa0472770 | Msa1184780 | 0.840139 | 1.040672e-57 | -8.615850e-47 |
Msa0476680 | Msa1184780 | 0.800061 | 1.719263e-48 | -8.615850e-47 |
Msa0994370 | Msa1184780 | 0.824329 | 8.562027e-54 | -8.615850e-47 |
Msa1013070 | Msa1184780 | 0.814293 | 1.658579e-51 | -8.615850e-47 |
Msa1024680 | Msa1184780 | 0.805569 | 1.252792e-49 | -8.615850e-47 |
Msa1042660 | Msa1184780 | 0.813224 | 2.851463e-51 | -8.615850e-47 |
Msa1054510 | Msa1184780 | 0.808481 | 3.032406e-50 | -8.615850e-47 |
Msa1063420 | Msa1184780 | 0.832859 | 7.431709e-56 | -8.615850e-47 |
Msa1074350 | Msa1184780 | 0.817711 | 2.861582e-52 | -8.615850e-47 |
Msa1094280 | Msa1184780 | 0.837705 | 4.440233e-57 | -8.615850e-47 |
Msa0240270 | Msa1184780 | 0.834203 | 3.433247e-56 | -8.615850e-47 |
Msa0262370 | Msa1184780 | 0.801013 | 1.099909e-48 | -8.615850e-47 |
Msa0276430 | Msa1184780 | 0.803761 | 2.986968e-49 | -8.615850e-47 |
Msa0305620 | Msa1184780 | 0.816562 | 5.186332e-52 | -8.615850e-47 |
Msa0347750 | Msa1184780 | 0.815341 | 9.714991e-52 | -8.615850e-47 |
Msa1109810 | Msa1184780 | 0.824024 | 1.009543e-53 | -8.615850e-47 |
Msa1184780 | Msa1184790 | 0.809993 | 1.437667e-50 | -8.615850e-47 |
Msa1184780 | Msa1206270 | 0.802099 | 6.587347e-49 | -8.615850e-47 |
Msa1184780 | Msa1209190 | 0.838657 | 2.525015e-57 | -8.615850e-47 |
Msa1184780 | Msa1209860 | 0.832257 | 1.048159e-55 | -8.615850e-47 |
Msa1184780 | Msa1214170 | 0.814166 | 1.768889e-51 | -8.615850e-47 |
Msa1184780 | Msa1221330 | 0.812371 | 4.383951e-51 | -8.615850e-47 |
Msa1184780 | Msa1225100 | 0.801260 | 9.790408e-49 | -8.615850e-47 |
Msa1184780 | Msa1229480 | 0.802033 | 6.796159e-49 | -8.615850e-47 |
Msa1184780 | Msa1234620 | 0.828601 | 8.213082e-55 | -8.615850e-47 |
Msa1184780 | Msa1238680 | 0.837305 | 5.621199e-57 | -8.615850e-47 |
Msa1184780 | Msa1270660 | 0.821854 | 3.235878e-53 | -8.615850e-47 |
Msa1184780 | Msa1270730 | 0.810910 | 9.113166e-51 | -8.615850e-47 |
Msa1184780 | Msa1279840 | 0.809447 | 1.883511e-50 | -8.615850e-47 |
Msa1184780 | Msa1280150 | 0.817218 | 3.694870e-52 | -8.615850e-47 |
Msa1184780 | Msa1280170 | 0.894308 | 2.785423e-75 | -8.615850e-47 |
Msa1184780 | Msa1285200 | 0.828914 | 6.898564e-55 | -8.615850e-47 |
Msa1184780 | Msa1304810 | 0.803844 | 2.871031e-49 | -8.615850e-47 |
Msa1184780 | Msa1316360 | 0.801818 | 7.526209e-49 | -8.615850e-47 |
Msa1184780 | Msa1316630 | 0.809672 | 1.685515e-50 | -8.615850e-47 |
Msa1184780 | Msa1329870 | 0.800275 | 1.555458e-48 | -8.615850e-47 |
Msa1184780 | Msa1332050 | 0.830208 | 3.341880e-55 | -8.615850e-47 |
Msa1184780 | Msa1335230 | 0.819732 | 9.949629e-53 | -8.615850e-47 |
Msa1184780 | Msa1360020 | 0.814397 | 1.573488e-51 | -8.615850e-47 |
Msa1184780 | Msa1370590 | 0.820297 | 7.391102e-53 | -8.615850e-47 |
Msa1184780 | Msa1384100 | 0.824266 | 8.860823e-54 | -8.615850e-47 |
Msa1184780 | Msa1400930 | 0.804389 | 2.212047e-49 | -8.615850e-47 |
Msa1184780 | Msa1420270 | 0.815469 | 9.101191e-52 | -8.615850e-47 |
Msa1184780 | Msa1421900 | 0.820874 | 5.447009e-53 | -8.615850e-47 |
Msa1184780 | Msa1422810 | 0.800493 | 1.404442e-48 | -8.615850e-47 |
Msa1184780 | Msa1428780 | 0.805992 | 1.021334e-49 | -8.615850e-47 |
Msa1184780 | Msa1434040 | 0.816765 | 4.672106e-52 | -8.615850e-47 |
Msa1184780 | Msa1444120 | 0.823523 | 1.322977e-53 | -8.615850e-47 |
Msa1184780 | Msa1444260 | 0.823405 | 1.409744e-53 | -8.615850e-47 |
Msa0482940 | Msa1184780 | 0.824023 | 1.010582e-53 | -8.615850e-47 |
Msa0500400 | Msa1184780 | 0.807255 | 5.527830e-50 | -8.615850e-47 |
Msa0518170 | Msa1184780 | 0.825732 | 3.993294e-54 | -8.615850e-47 |
Msa0521010 | Msa1184780 | 0.800182 | 1.624875e-48 | -8.615850e-47 |
Msa0581400 | Msa1184780 | 0.809216 | 2.111201e-50 | -8.615850e-47 |
Msa0583670 | Msa1184780 | 0.835980 | 1.223414e-56 | -8.615850e-47 |
Msa0844610 | Msa1184780 | 0.835200 | 1.926829e-56 | -8.615850e-47 |
Msa0853810 | Msa1184780 | 0.814063 | 1.864315e-51 | -8.615850e-47 |
Msa0863720 | Msa1184780 | 0.815601 | 8.504928e-52 | -8.615850e-47 |
Msa0866070 | Msa1184780 | 0.804498 | 2.098780e-49 | -8.615850e-47 |
Msa0877710 | Msa1184780 | 0.802830 | 4.657127e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1184780 | MtrunA17_Chr8g0350241 | 87.978 | 183 | 22 | 0 | 1 | 183 | 1 | 183 | 3.15e-120 | 337 |
Msa1184780 | MtrunA17_Chr8g0350271 | 87.500 | 184 | 22 | 1 | 1 | 183 | 1 | 184 | 1.40e-117 | 330 |
Msa1184780 | MtrunA17_Chr8g0350221 | 86.957 | 184 | 23 | 1 | 1 | 183 | 1 | 184 | 4.91e-117 | 329 |
Msa1184780 | MtrunA17_Chr8g0350291 | 83.060 | 183 | 31 | 0 | 1 | 183 | 1 | 183 | 6.90e-112 | 316 |
Msa1184780 | MtrunA17_Chr3g0109941 | 80.328 | 183 | 36 | 0 | 1 | 183 | 1 | 183 | 4.55e-110 | 311 |
Msa1184780 | MtrunA17_Chr8g0350231 | 87.006 | 177 | 21 | 2 | 1 | 175 | 1 | 177 | 4.66e-109 | 309 |
Msa1184780 | MtrunA17_Chr8g0350281 | 51.397 | 179 | 59 | 6 | 5 | 174 | 7 | 166 | 3.78e-48 | 155 |
Msa1184780 | MtrunA17_Chr7g0246561 | 32.402 | 179 | 93 | 6 | 5 | 176 | 2 | 159 | 1.35e-21 | 86.3 |
Msa1184780 | MtrunA17_Chr8g0350191 | 34.426 | 183 | 103 | 6 | 5 | 179 | 2 | 175 | 1.27e-19 | 81.6 |
Msa1184780 | MtrunA17_Chr8g0350211 | 32.787 | 183 | 106 | 6 | 5 | 179 | 2 | 175 | 1.78e-19 | 81.3 |
Msa1184780 | MtrunA17_Chr8g0350201 | 34.426 | 183 | 103 | 6 | 5 | 179 | 2 | 175 | 4.98e-19 | 80.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 48 sgRNAs with CRISPR-Local
Find 369 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTAAAAGTGTTCGTCCTAT+TGG | 0.271262 | 8_1:+20910396 | Msa1184780:CDS |
AATTATGGTGGTCGATTAAC+TGG | 0.276699 | 8_1:+20910609 | Msa1184780:CDS |
ACAAATCTTTAAATAATGTT+TGG | 0.280513 | 8_1:-20910696 | None:intergenic |
TTAAAAGTGTTCGTCCTATT+GGG | 0.300858 | 8_1:+20910397 | Msa1184780:CDS |
TTGCTATTGGTATTCCCTTT+TGG | 0.313784 | 8_1:+20910664 | Msa1184780:CDS |
TATTGTTATGTCCTTCAATT+TGG | 0.315360 | 8_1:-20904432 | None:intergenic |
TTCACAAACATTAGAAATTA+CGG | 0.337907 | 8_1:+20904516 | Msa1184780:CDS |
CAAATCTTTAAATAATGTTT+GGG | 0.339025 | 8_1:-20910695 | None:intergenic |
TTAGAAATTACGGTTATATC+AGG | 0.339630 | 8_1:+20904526 | Msa1184780:CDS |
GGTGGCAAGAATTGCCGTTT+TGG | 0.348617 | 8_1:+20910419 | Msa1184780:CDS |
TGAGTTATAAATTGAGGGAT+TGG | 0.355220 | 8_1:+20910484 | Msa1184780:CDS |
AACTCTAATGGTGTTGCTAT+TGG | 0.365765 | 8_1:+20910651 | Msa1184780:CDS |
GATTGGGAAGGGAAGCAAAA+TGG | 0.374296 | 8_1:+20910501 | Msa1184780:CDS |
GCAATTCTTGCCACCCCAAT+AGG | 0.383363 | 8_1:-20910411 | None:intergenic |
GTTTGGGTAATTCCACCAAA+AGG | 0.410769 | 8_1:-20910679 | None:intergenic |
CAGTTTGAGGGTGGTTGTGC+CGG | 0.417940 | 8_1:+20910536 | Msa1184780:CDS |
AGTTATTCATTTCAGTTTGA+GGG | 0.452076 | 8_1:+20910524 | Msa1184780:CDS |
TTCCATCACAACCAAATTGA+AGG | 0.469735 | 8_1:+20904421 | None:intergenic |
GAGTTATAAATTGAGGGATT+GGG | 0.478191 | 8_1:+20910485 | Msa1184780:CDS |
TGAAGGAAAATGATAATTGT+GGG | 0.480545 | 8_1:+20904626 | Msa1184780:CDS |
GTCGTGCATGGAAAGAATTA+TGG | 0.483126 | 8_1:+20910594 | Msa1184780:CDS |
GTGAAGGAAAATGATAATTG+TGG | 0.484213 | 8_1:+20904625 | Msa1184780:CDS |
TTTGGGTAATTCCACCAAAA+GGG | 0.494809 | 8_1:-20910678 | None:intergenic |
GAGTTATTCATTTCAGTTTG+AGG | 0.495462 | 8_1:+20910523 | Msa1184780:CDS |
CCCGTTTAAAATATCCAAAA+CGG | 0.515325 | 8_1:-20910433 | None:intergenic |
TGCAAGGTCAATCACGTTTG+AGG | 0.523501 | 8_1:+20910359 | Msa1184780:intron |
GATGCATACGTTGTTGTTCG+AGG | 0.525133 | 8_1:+20904571 | Msa1184780:CDS |
GAGAAGCAAACGGTCGTGCA+TGG | 0.548258 | 8_1:+20910582 | Msa1184780:CDS |
GTTGGTGTCAAGAACTCTAA+TGG | 0.557347 | 8_1:+20910639 | Msa1184780:CDS |
TATTCATTTCAGTTTGAGGG+TGG | 0.561056 | 8_1:+20910527 | Msa1184780:CDS |
ATAAATTGAGGGATTGGGAA+GGG | 0.564987 | 8_1:+20910490 | Msa1184780:CDS |
TAAAAGTGTTCGTCCTATTG+GGG | 0.565563 | 8_1:+20910398 | Msa1184780:CDS |
TGAACATGCCATTGCATGCA+AGG | 0.566598 | 8_1:+20904689 | Msa1184780:CDS |
GGTTGTGCCGGAGCAAAGAT+CGG | 0.574606 | 8_1:+20910548 | Msa1184780:CDS |
TGGTGGTCGATTAACTGGAA+TGG | 0.578834 | 8_1:+20910614 | Msa1184780:CDS |
CGATTAACTGGAATGGATGT+TGG | 0.583378 | 8_1:+20910621 | Msa1184780:CDS |
AGGCGAAAATATTCATGTAA+CGG | 0.589149 | 8_1:+20904546 | Msa1184780:CDS |
ACGGTAACCGATCTTTGCTC+CGG | 0.597422 | 8_1:-20910555 | None:intergenic |
TATAAATTGAGGGATTGGGA+AGG | 0.601127 | 8_1:+20910489 | Msa1184780:CDS |
AAGTGTTCGTCCTATTGGGG+TGG | 0.615705 | 8_1:+20910401 | Msa1184780:CDS |
GTGATTGACCTTGCATGCAA+TGG | 0.618595 | 8_1:-20904697 | None:intergenic |
GCAAAGATCGGTTACCGTGG+TGG | 0.620546 | 8_1:+20910560 | Msa1184780:CDS |
TACCGTGGTGGAGAAGCAAA+CGG | 0.624346 | 8_1:+20910572 | Msa1184780:CDS |
TGTTTGTGAAGCTACAACCA+TGG | 0.632825 | 8_1:-20904503 | None:intergenic |
CGAAAATATTCATGTAACGG+AGG | 0.635995 | 8_1:+20904549 | Msa1184780:CDS |
GACCGTTTGCTTCTCCACCA+CGG | 0.665411 | 8_1:-20910574 | None:intergenic |
GTGCATGGAAAGAATTATGG+TGG | 0.676893 | 8_1:+20910597 | Msa1184780:CDS |
GGAGCAAAGATCGGTTACCG+TGG | 0.687601 | 8_1:+20910557 | Msa1184780:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATAAGTAATTTTTTTTTGTA+GGG | - | chr8_1:20906266-20906285 | None:intergenic | 10.0% |
!!! | TATAAGTAATTTTTTTTTGT+AGG | - | chr8_1:20906267-20906286 | None:intergenic | 10.0% |
!! | TTAAAAAATTTAAGAGTTTA+AGG | - | chr8_1:20906327-20906346 | None:intergenic | 10.0% |
!! | AATACTATTAAAATTAAGTA+AGG | + | chr8_1:20906648-20906667 | Msa1184780:intron | 10.0% |
!!! | ATTATGACTAATATTTTTTA+AGG | + | chr8_1:20906836-20906855 | Msa1184780:intron | 10.0% |
!!! | TATTTCAATTATTATCTTTT+AGG | + | chr8_1:20907197-20907216 | Msa1184780:intron | 10.0% |
!!! | ATTTCAATTATTATCTTTTA+GGG | + | chr8_1:20907198-20907217 | Msa1184780:intron | 10.0% |
!!! | CATATTATACTATTTTTTTA+GGG | - | chr8_1:20907312-20907331 | None:intergenic | 10.0% |
!!! | ACATATTATACTATTTTTTT+AGG | - | chr8_1:20907313-20907332 | None:intergenic | 10.0% |
!! | TAACAAAAAAAAAATATGAT+AGG | + | chr8_1:20907332-20907351 | Msa1184780:intron | 10.0% |
!! | AATAAATTAAACAAAGTAAA+TGG | - | chr8_1:20907767-20907786 | None:intergenic | 10.0% |
!!! | TTTTAGATATAAATAGATAT+TGG | + | chr8_1:20908234-20908253 | Msa1184780:intron | 10.0% |
!! | CAAAAATTAACTTAAAAATA+GGG | - | chr8_1:20908520-20908539 | None:intergenic | 10.0% |
!! | ACAAAAATTAACTTAAAAAT+AGG | - | chr8_1:20908521-20908540 | None:intergenic | 10.0% |
!!! | GTAAAAAAATTCTATTTTTT+TGG | - | chr8_1:20908598-20908617 | None:intergenic | 10.0% |
!!! | ATGAATTTTTATATTTTTGA+CGG | - | chr8_1:20908649-20908668 | None:intergenic | 10.0% |
!!! | AAAATAGTTTCTATTTTTTT+TGG | + | chr8_1:20909239-20909258 | Msa1184780:intron | 10.0% |
!! | AAAAAGTGAAAAATAATTAA+TGG | - | chr8_1:20909702-20909721 | None:intergenic | 10.0% |
!! | TATTATGTGCAAAATATTAA+AGG | - | chr8_1:20905748-20905767 | None:intergenic | 15.0% |
!! | TATAAGAAGAATAAAAGTAA+GGG | + | chr8_1:20906163-20906182 | Msa1184780:intron | 15.0% |
!! | AATGCTATTAAAATTAAGTA+AGG | - | chr8_1:20906237-20906256 | None:intergenic | 15.0% |
!!! | AAACAAAATTTATTTTAGCA+GGG | - | chr8_1:20906298-20906317 | None:intergenic | 15.0% |
!!! | TAAACAAAATTTATTTTAGC+AGG | - | chr8_1:20906299-20906318 | None:intergenic | 15.0% |
!! | AGATATAAGTAACAAAAATA+TGG | + | chr8_1:20906458-20906477 | Msa1184780:intron | 15.0% |
!!! | AAATTTTTGCGATATTTTTT+CGG | + | chr8_1:20906492-20906511 | Msa1184780:intron | 15.0% |
!! | AAGCATAAATTAAACAAATT+TGG | + | chr8_1:20906576-20906595 | Msa1184780:intron | 15.0% |
!!! | TATACTTATAGTTACTTTTA+GGG | - | chr8_1:20906753-20906772 | None:intergenic | 15.0% |
!!! | ATATACTTATAGTTACTTTT+AGG | - | chr8_1:20906754-20906773 | None:intergenic | 15.0% |
!! | AAAAATCTAATAAATATGGA+AGG | - | chr8_1:20906990-20907009 | None:intergenic | 15.0% |
!!! | TATTAGATTTTTTTTACTAC+AGG | + | chr8_1:20906998-20907017 | Msa1184780:intron | 15.0% |
!!! | TTTAATTCTTATTTTTTGAG+AGG | + | chr8_1:20907226-20907245 | Msa1184780:intron | 15.0% |
!! | ATCAGAATATTAAATTACAA+AGG | - | chr8_1:20907848-20907867 | None:intergenic | 15.0% |
!! | ATAATTATGAATATATGCAA+GGG | - | chr8_1:20907918-20907937 | None:intergenic | 15.0% |
!! | AATAATTATGAATATATGCA+AGG | - | chr8_1:20907919-20907938 | None:intergenic | 15.0% |
!!! | TCATTTTTTTTTTTTTTGAG+AGG | + | chr8_1:20908158-20908177 | Msa1184780:intron | 15.0% |
!!! | TAGTGATTGAAAATTTTATA+GGG | - | chr8_1:20908489-20908508 | None:intergenic | 15.0% |
!!! | TGAAGATAGAAATTTTTTTA+GGG | + | chr8_1:20908804-20908823 | Msa1184780:intron | 15.0% |
!!! | AAAAGAATATCTCTAAAAAA+AGG | - | chr8_1:20909122-20909141 | None:intergenic | 15.0% |
!!! | TATATATAAGGTTAAGTTTT+GGG | - | chr8_1:20910035-20910054 | None:intergenic | 15.0% |
!!! | ATATATATAAGGTTAAGTTT+TGG | - | chr8_1:20910036-20910055 | None:intergenic | 15.0% |
!! | ATTAATTAATTCTCTACTAT+GGG | + | chr8_1:20910138-20910157 | Msa1184780:intron | 15.0% |
!!! | AATTTTGAGTTATAAATTGA+GGG | + | chr8_1:20910479-20910498 | Msa1184780:CDS | 15.0% |
!! | TTCACAAACATTAGAAATTA+CGG | + | chr8_1:20904516-20904535 | Msa1184780:CDS | 20.0% |
!! | TAATAGTTACACAACAAAAA+CGG | + | chr8_1:20904603-20904622 | Msa1184780:CDS | 20.0% |
!!! | TTTGAAATGGCAAATTAAAT+GGG | - | chr8_1:20905370-20905389 | None:intergenic | 20.0% |
!!! | ATTTGAAATGGCAAATTAAA+TGG | - | chr8_1:20905371-20905390 | None:intergenic | 20.0% |
!! | TTTGGATTTATTAAATCCAT+AGG | + | chr8_1:20905507-20905526 | Msa1184780:intron | 20.0% |
!!! | AAACTTGAAGTTTGATTTTA+GGG | + | chr8_1:20905644-20905663 | Msa1184780:intron | 20.0% |
!! | TAAACAAATAACTAAACCTT+AGG | + | chr8_1:20905780-20905799 | Msa1184780:intron | 20.0% |
!!! | GTATTTTTGCAACTTATATT+CGG | - | chr8_1:20906126-20906145 | None:intergenic | 20.0% |
!! | ATATAAGTTGCAAAAATACA+AGG | + | chr8_1:20906127-20906146 | Msa1184780:intron | 20.0% |
!! | GTATAAGAAGAATAAAAGTA+AGG | + | chr8_1:20906162-20906181 | Msa1184780:intron | 20.0% |
!!! | GTTTTTCAACAATTTTTTAC+AGG | - | chr8_1:20906546-20906565 | None:intergenic | 20.0% |
!!! | AGAAAGGTTAATTATGTTTT+TGG | - | chr8_1:20906706-20906725 | None:intergenic | 20.0% |
!!! | GCTTTTTTTTTTTTGAAGAA+AGG | - | chr8_1:20906722-20906741 | None:intergenic | 20.0% |
!! | ACGTATTAACACAATAAAAA+GGG | - | chr8_1:20906812-20906831 | None:intergenic | 20.0% |
!! | TACGTATTAACACAATAAAA+AGG | - | chr8_1:20906813-20906832 | None:intergenic | 20.0% |
!!! | TATATTTTGTCCAGAAATAA+TGG | + | chr8_1:20906935-20906954 | Msa1184780:intron | 20.0% |
!!! | GGATTTGATAAGAAAATTTT+CGG | + | chr8_1:20907123-20907142 | Msa1184780:intron | 20.0% |
!!! | TTGTCTTACAAGTTTAATTT+CGG | + | chr8_1:20907404-20907423 | Msa1184780:intron | 20.0% |
!!! | TAAAATTTGTCGTTTGTATA+AGG | - | chr8_1:20907495-20907514 | None:intergenic | 20.0% |
!! | GAAGATTATTCACTATTAAA+CGG | + | chr8_1:20907561-20907580 | Msa1184780:intron | 20.0% |
!!! | CTTTCTTTTTACTATGATAT+TGG | - | chr8_1:20907603-20907622 | None:intergenic | 20.0% |
!! | CAATATCATAGTAAAAAGAA+AGG | + | chr8_1:20907601-20907620 | Msa1184780:intron | 20.0% |
!!! | TGGTTTTTTTATGTGTATTT+TGG | + | chr8_1:20907670-20907689 | Msa1184780:intron | 20.0% |
!!! | TAATTATTCAGAATTTTCAG+AGG | + | chr8_1:20907931-20907950 | Msa1184780:intron | 20.0% |
!!! | TTTTTTTTTTTTGAGAGGAA+TGG | + | chr8_1:20908163-20908182 | Msa1184780:intron | 20.0% |
!!! | TTTTTTTTTTTGAGAGGAAT+GGG | + | chr8_1:20908164-20908183 | Msa1184780:intron | 20.0% |
!! | GTTAATCATGAATAAAGTTA+TGG | - | chr8_1:20908271-20908290 | None:intergenic | 20.0% |
!!! | GTAGTGATTGAAAATTTTAT+AGG | - | chr8_1:20908490-20908509 | None:intergenic | 20.0% |
!!! | AAATTTTCAATCACTACTTT+TGG | + | chr8_1:20908493-20908512 | Msa1184780:intron | 20.0% |
!! | ATATGAGTTTACTTTAAATG+AGG | + | chr8_1:20908772-20908791 | Msa1184780:intron | 20.0% |
!! | TATGAGTTTACTTTAAATGA+GGG | + | chr8_1:20908773-20908792 | Msa1184780:intron | 20.0% |
!!! | AAAATTTCTATCTTCACTTT+TGG | - | chr8_1:20908800-20908819 | None:intergenic | 20.0% |
!!! | GTGAAGATAGAAATTTTTTT+AGG | + | chr8_1:20908803-20908822 | Msa1184780:intron | 20.0% |
!!! | TAACTTTTTTAAAGTTTCAG+AGG | + | chr8_1:20908962-20908981 | Msa1184780:intron | 20.0% |
!!! | ATAGTTTCTATTTTTTTTGG+TGG | + | chr8_1:20909242-20909261 | Msa1184780:intron | 20.0% |
!!! | ATTGATATCAGATAATTTTC+TGG | + | chr8_1:20909443-20909462 | Msa1184780:intron | 20.0% |
!!! | TTATGTTGATAAAACATTGT+AGG | - | chr8_1:20909472-20909491 | None:intergenic | 20.0% |
!!! | ATTTATTTTATCAAATGGAG+AGG | - | chr8_1:20909606-20909625 | None:intergenic | 20.0% |
!! | TCTCCATTTGATAAAATAAA+TGG | + | chr8_1:20909605-20909624 | Msa1184780:intron | 20.0% |
!!! | CTTCCATTTATTTTATCAAA+TGG | - | chr8_1:20909611-20909630 | None:intergenic | 20.0% |
!! | GAAAAATAATTAATGGTGAT+GGG | - | chr8_1:20909695-20909714 | None:intergenic | 20.0% |
!! | TGAAAAATAATTAATGGTGA+TGG | - | chr8_1:20909696-20909715 | None:intergenic | 20.0% |
!! | GATATAGACTCAAAAAAAAT+TGG | - | chr8_1:20909725-20909744 | None:intergenic | 20.0% |
!! | GTAAAAAATAACATAAACAG+TGG | + | chr8_1:20909830-20909849 | Msa1184780:intron | 20.0% |
!! | AACCTTATATATATTCATAC+TGG | + | chr8_1:20910042-20910061 | Msa1184780:intron | 20.0% |
!! | TTCCAGTATGAATATATATA+AGG | - | chr8_1:20910047-20910066 | None:intergenic | 20.0% |
!! | CATTAATTAATTCTCTACTA+TGG | + | chr8_1:20910137-20910156 | Msa1184780:intron | 20.0% |
!!! | GAATTTTGAGTTATAAATTG+AGG | + | chr8_1:20910478-20910497 | Msa1184780:CDS | 20.0% |
! | TTAGAAATTACGGTTATATC+AGG | + | chr8_1:20904526-20904545 | Msa1184780:CDS | 25.0% |
! | TGAAGGAAAATGATAATTGT+GGG | + | chr8_1:20904626-20904645 | Msa1184780:CDS | 25.0% |
!!! | AAAACTCGAGTTTTATTTCA+TGG | + | chr8_1:20904650-20904669 | Msa1184780:CDS | 25.0% |
!!! | AAACTCGAGTTTTATTTCAT+GGG | + | chr8_1:20904651-20904670 | Msa1184780:CDS | 25.0% |
!!! | GAATTTTGAGTTACAAATTG+AGG | + | chr8_1:20904824-20904843 | Msa1184780:intron | 25.0% |
!! | CAAAATGGAGTTATTCATTT+TGG | + | chr8_1:20904862-20904881 | Msa1184780:intron | 25.0% |
! | TGAAATGGAAACATTTGAAA+TGG | - | chr8_1:20905383-20905402 | None:intergenic | 25.0% |
! | TTATTATCAAGAGGTTGAAA+TGG | - | chr8_1:20905398-20905417 | None:intergenic | 25.0% |
!! | TTTCAACCTCTTGATAATAA+TGG | + | chr8_1:20905398-20905417 | Msa1184780:intron | 25.0% |
!! | TTCAACCTCTTGATAATAAT+GGG | + | chr8_1:20905399-20905418 | Msa1184780:intron | 25.0% |
!!! | GAAACTTGAAGTTTGATTTT+AGG | + | chr8_1:20905643-20905662 | Msa1184780:intron | 25.0% |
! | AGAATTCGTAAGATCTAATT+TGG | - | chr8_1:20906050-20906069 | None:intergenic | 25.0% |
!! | GTAAGGGTTAATTATGTTTT+TGG | + | chr8_1:20906179-20906198 | Msa1184780:intron | 25.0% |
! | GTGTTAAGAACGTTATTAAA+AGG | - | chr8_1:20906522-20906541 | None:intergenic | 25.0% |
! | AAACAAATTTGGATTGAGTA+AGG | + | chr8_1:20906587-20906606 | Msa1184780:intron | 25.0% |
!!! | ACAAAATATAAGTGTCGATA+GGG | - | chr8_1:20906925-20906944 | None:intergenic | 25.0% |
! | TTAGAAATCACCATTATTTC+TGG | - | chr8_1:20906948-20906967 | None:intergenic | 25.0% |
! | AGAAATAATGGTGATTTCTA+AGG | + | chr8_1:20906947-20906966 | Msa1184780:intron | 25.0% |
! | AATATACGAAATATAGTGCA+TGG | + | chr8_1:20907040-20907059 | Msa1184780:intron | 25.0% |
!!! | GTGCATGGTTTTATATTTTT+AGG | + | chr8_1:20907055-20907074 | Msa1184780:intron | 25.0% |
!! | AAATTTTCGGAATATTAGCA+AGG | + | chr8_1:20907136-20907155 | Msa1184780:intron | 25.0% |
!!! | ATTCTTATTTTTTGAGAGGA+AGG | + | chr8_1:20907230-20907249 | Msa1184780:intron | 25.0% |
!! | TGTCTTACAAGTTTAATTTC+GGG | + | chr8_1:20907405-20907424 | Msa1184780:intron | 25.0% |
! | TAATAGTGAATAATCTTCGT+TGG | - | chr8_1:20907559-20907578 | None:intergenic | 25.0% |
!! | AAGAAAGGTTTAATTTCTTG+TGG | + | chr8_1:20907616-20907635 | Msa1184780:intron | 25.0% |
! | ACAAATGATAGTCTAGTAAA+TGG | + | chr8_1:20907809-20907828 | Msa1184780:intron | 25.0% |
! | TGCATATATGAAAATCCATT+AGG | + | chr8_1:20907994-20908013 | Msa1184780:intron | 25.0% |
! | AAAACCCAACAATTAAACTT+CGG | - | chr8_1:20908028-20908047 | None:intergenic | 25.0% |
! | AGAGATGAAAAAATTGGTTA+TGG | + | chr8_1:20908085-20908104 | Msa1184780:intron | 25.0% |
!! | TGTTGAAGGAAAATTTTAGA+GGG | - | chr8_1:20908460-20908479 | None:intergenic | 25.0% |
!! | ATGTTGAAGGAAAATTTTAG+AGG | - | chr8_1:20908461-20908480 | None:intergenic | 25.0% |
! | GAAAAGTTGACGTATTTATA+GGG | + | chr8_1:20908864-20908883 | Msa1184780:intron | 25.0% |
!! | TATACAAGCTACTTTAGAAA+GGG | - | chr8_1:20908907-20908926 | None:intergenic | 25.0% |
!! | ATATACAAGCTACTTTAGAA+AGG | - | chr8_1:20908908-20908927 | None:intergenic | 25.0% |
!!! | ATTCTAATCCATTTTTTACG+TGG | - | chr8_1:20909583-20909602 | None:intergenic | 25.0% |
!! | ATAAATGGAAGTACACAATT+TGG | + | chr8_1:20909620-20909639 | Msa1184780:intron | 25.0% |
! | AAAATAACATAAACAGTGGT+CGG | + | chr8_1:20909834-20909853 | Msa1184780:intron | 25.0% |
!! | GTTTCAGTGTATTTGAAATA+TGG | - | chr8_1:20909953-20909972 | None:intergenic | 25.0% |
!!! | TAAGTTTTGGGATTTTGATA+TGG | - | chr8_1:20910023-20910042 | None:intergenic | 25.0% |
! | AGAATGAATGGATATTGTTA+TGG | - | chr8_1:20910082-20910101 | None:intergenic | 25.0% |
! | AAAGATAATGACGATAATTG+TGG | + | chr8_1:20910279-20910298 | Msa1184780:intron | 25.0% |
! | AAGATAATGACGATAATTGT+GGG | + | chr8_1:20910280-20910299 | Msa1184780:intron | 25.0% |
! | AGTTATTCATTTCAGTTTGA+GGG | + | chr8_1:20910524-20910543 | Msa1184780:CDS | 25.0% |
AGGCGAAAATATTCATGTAA+CGG | + | chr8_1:20904546-20904565 | Msa1184780:CDS | 30.0% | |
GTGAAGGAAAATGATAATTG+TGG | + | chr8_1:20904625-20904644 | Msa1184780:CDS | 30.0% | |
TGAGTTACAAATTGAGGAAT+TGG | + | chr8_1:20904830-20904849 | Msa1184780:intron | 30.0% | |
GAGTTACAAATTGAGGAATT+GGG | + | chr8_1:20904831-20904850 | Msa1184780:intron | 30.0% | |
!! | AGTTATTCATTTTGGTGTGA+GGG | + | chr8_1:20904870-20904889 | Msa1184780:intron | 30.0% |
!! | AACTCTAATGGTGTTGTTAT+TGG | + | chr8_1:20904997-20905016 | Msa1184780:intron | 30.0% |
!! | TTGTTATTGGTATTCCGTTT+TGG | + | chr8_1:20905010-20905029 | Msa1184780:intron | 30.0% |
!! | TACTGGTTTAGGAACTTAAA+AGG | - | chr8_1:20905151-20905170 | None:intergenic | 30.0% |
! | ATCCACTAAACTTGTTTAAC+CGG | - | chr8_1:20905175-20905194 | None:intergenic | 30.0% |
GAAATTGTTGAAGATAAGCT+TGG | - | chr8_1:20905314-20905333 | None:intergenic | 30.0% | |
! | CTTTTCCCATTATTATCAAG+AGG | - | chr8_1:20905407-20905426 | None:intergenic | 30.0% |
AATAAAAACCTGTCAATGCT+TGG | - | chr8_1:20905483-20905502 | None:intergenic | 30.0% | |
!!! | GACAGGTTTTTATTTTGCTT+TGG | + | chr8_1:20905489-20905508 | Msa1184780:intron | 30.0% |
ATGCATATACTCATAACCTA+TGG | - | chr8_1:20905526-20905545 | None:intergenic | 30.0% | |
!!! | TTCGGGAAAGATTTGTTTTT+TGG | + | chr8_1:20905595-20905614 | Msa1184780:intron | 30.0% |
AACACAATTACTTGTTTACC+TGG | - | chr8_1:20905807-20905826 | None:intergenic | 30.0% | |
!! | TGTGATACATACAAGTTGAT+CGG | + | chr8_1:20905979-20905998 | Msa1184780:intron | 30.0% |
AAGTAAGGACTAAACTTACA+AGG | - | chr8_1:20906663-20906682 | None:intergenic | 30.0% | |
!!! | TTTTTGCGATATTTTTTCGG+AGG | + | chr8_1:20906495-20906514 | Msa1184780:intron | 30.0% |
!!! | TGAGTGCAGAAATTTTTTGT+AGG | + | chr8_1:20906618-20906637 | Msa1184780:intron | 30.0% |
!!! | GAGTGCAGAAATTTTTTGTA+GGG | + | chr8_1:20906619-20906638 | Msa1184780:intron | 30.0% |
! | TTACAAAGTCGCAATTTTGT+AGG | + | chr8_1:20906678-20906697 | Msa1184780:intron | 30.0% |
! | TACAAAGTCGCAATTTTGTA+GGG | + | chr8_1:20906679-20906698 | Msa1184780:intron | 30.0% |
! | GTAACTTCAGATTCTTTTTG+TGG | - | chr8_1:20906873-20906892 | None:intergenic | 30.0% |
!! | GACAAAATATAAGTGTCGAT+AGG | - | chr8_1:20906926-20906945 | None:intergenic | 30.0% |
TGAGATGAAAATGTTAGAAG+AGG | + | chr8_1:20907088-20907107 | Msa1184780:intron | 30.0% | |
ATACGATTGTTTGTCATCAT+TGG | - | chr8_1:20907279-20907298 | None:intergenic | 30.0% | |
! | CAATGATGAATTGGTCTAAA+TGG | + | chr8_1:20907431-20907450 | Msa1184780:intron | 30.0% |
GATTATTCACTATTAAACGG+TGG | + | chr8_1:20907564-20907583 | Msa1184780:intron | 30.0% | |
ACATAAATGGTTACGATTTG+TGG | + | chr8_1:20907650-20907669 | Msa1184780:intron | 30.0% | |
TGAAATTAACCCCTCTAAAT+GGG | - | chr8_1:20908141-20908160 | None:intergenic | 30.0% | |
ATGAAATTAACCCCTCTAAA+TGG | - | chr8_1:20908142-20908161 | None:intergenic | 30.0% | |
GTCTTTAGACAACATTTGTA+CGG | - | chr8_1:20908349-20908368 | None:intergenic | 30.0% | |
TTATAGGGACTAAATGTTGA+AGG | - | chr8_1:20908474-20908493 | None:intergenic | 30.0% | |
!! | TTTTAGGGACTAAAAGTTGA+AGG | + | chr8_1:20908819-20908838 | Msa1184780:intron | 30.0% |
TTTAGGGACTAAAAGTTGAA+GGG | + | chr8_1:20908820-20908839 | Msa1184780:intron | 30.0% | |
! | AAGTTGAAGGGAAATTTTTG+AGG | + | chr8_1:20908832-20908851 | Msa1184780:intron | 30.0% |
! | AGTTGAAGGGAAATTTTTGA+GGG | + | chr8_1:20908833-20908852 | Msa1184780:intron | 30.0% |
CGAAAAGTTGACGTATTTAT+AGG | + | chr8_1:20908863-20908882 | Msa1184780:intron | 30.0% | |
GCTTGTATATATTAAGCTAC+TGG | + | chr8_1:20908918-20908937 | Msa1184780:intron | 30.0% | |
!!! | GTTTCTATTTTTTTTGGTGG+TGG | + | chr8_1:20909245-20909264 | Msa1184780:intron | 30.0% |
TATCTCTCCAATTAGAGAAA+TGG | + | chr8_1:20909741-20909760 | Msa1184780:intron | 30.0% | |
ATCTTCTCCATTTCTCTAAT+TGG | - | chr8_1:20909751-20909770 | None:intergenic | 30.0% | |
GAAATGGAGAAGATACAAAA+TGG | + | chr8_1:20909757-20909776 | Msa1184780:intron | 30.0% | |
GAAAGAAATACGAGTGTAAT+TGG | - | chr8_1:20909982-20910001 | None:intergenic | 30.0% | |
TCATACTGGAACAAAGTTTA+TGG | + | chr8_1:20910056-20910075 | Msa1184780:intron | 30.0% | |
TTAGCTAGTGTAAGAATGAA+TGG | - | chr8_1:20910094-20910113 | None:intergenic | 30.0% | |
TTAGAAATCACGGTTATATC+CGG | + | chr8_1:20910177-20910196 | Msa1184780:intron | 30.0% | |
! | AAAATTCGAGTTTCCTTTCA+TGG | + | chr8_1:20910304-20910323 | Msa1184780:intron | 30.0% |
AAAACTTCTCATTCCATGAA+AGG | - | chr8_1:20910320-20910339 | None:intergenic | 30.0% | |
!! | TTTAAAAGTGTTCGTCCTAT+TGG | + | chr8_1:20910396-20910415 | Msa1184780:CDS | 30.0% |
!! | TTAAAAGTGTTCGTCCTATT+GGG | + | chr8_1:20910397-20910416 | Msa1184780:CDS | 30.0% |
!! | GCCGTTTTGGATATTTTAAA+CGG | + | chr8_1:20910432-20910451 | Msa1184780:CDS | 30.0% |
! | CCCGTTTAAAATATCCAAAA+CGG | - | chr8_1:20910436-20910455 | None:intergenic | 30.0% |
!! | CCGTTTTGGATATTTTAAAC+GGG | + | chr8_1:20910433-20910452 | Msa1184780:CDS | 30.0% |
!! | CGTTTTGGATATTTTAAACG+GGG | + | chr8_1:20910434-20910453 | Msa1184780:CDS | 30.0% |
!! | TATTTTAAACGGGGATGAAT+CGG | + | chr8_1:20910443-20910462 | Msa1184780:CDS | 30.0% |
TGAGTTATAAATTGAGGGAT+TGG | + | chr8_1:20910484-20910503 | Msa1184780:CDS | 30.0% | |
GAGTTATAAATTGAGGGATT+GGG | + | chr8_1:20910485-20910504 | Msa1184780:CDS | 30.0% | |
GAGTTATTCATTTCAGTTTG+AGG | + | chr8_1:20910523-20910542 | Msa1184780:CDS | 30.0% | |
CGAAAATATTCATGTAACGG+AGG | + | chr8_1:20904549-20904568 | Msa1184780:CDS | 35.0% | |
TTACACAACAAAAACGGTGA+AGG | + | chr8_1:20904609-20904628 | Msa1184780:CDS | 35.0% | |
!! | TTCAAAGGTATTCGACCTAT+TGG | + | chr8_1:20904742-20904761 | Msa1184780:intron | 35.0% |
!! | TCAAAGGTATTCGACCTATT+GGG | + | chr8_1:20904743-20904762 | Msa1184780:intron | 35.0% |
GCTCTTTCAGATATTCTCAA+TGG | + | chr8_1:20904778-20904797 | Msa1184780:intron | 35.0% | |
TACAAATTGAGGAATTGGGA+AGG | + | chr8_1:20904835-20904854 | Msa1184780:intron | 35.0% | |
ACAAATTGAGGAATTGGGAA+GGG | + | chr8_1:20904836-20904855 | Msa1184780:intron | 35.0% | |
!! | GAGTTATTCATTTTGGTGTG+AGG | + | chr8_1:20904869-20904888 | Msa1184780:intron | 35.0% |
ATGGAAAGAATTATGGTGGT+CGG | + | chr8_1:20904947-20904966 | Msa1184780:intron | 35.0% | |
AACAACACCATTAGAGTTCT+TGG | - | chr8_1:20904995-20905014 | None:intergenic | 35.0% | |
! | TTATTGGTATTCCGTTTTGG+TGG | + | chr8_1:20905013-20905032 | Msa1184780:intron | 35.0% |
TTTGGGTAATTCCACCAAAA+CGG | - | chr8_1:20905027-20905046 | None:intergenic | 35.0% | |
TAAGTTCCTAAACCAGTAAC+CGG | + | chr8_1:20905153-20905172 | Msa1184780:intron | 35.0% | |
! | AAACTTGTTTAACCGGTTAC+TGG | - | chr8_1:20905168-20905187 | None:intergenic | 35.0% |
AACCGGTTAAACAAGTTTAG+TGG | + | chr8_1:20905170-20905189 | Msa1184780:intron | 35.0% | |
TATTGCCCACAGTGAAATTT+CGG | + | chr8_1:20905577-20905596 | Msa1184780:intron | 35.0% | |
! | GGTTGATCTTTAGCTGATTT+AGG | + | chr8_1:20905616-20905635 | Msa1184780:intron | 35.0% |
GAACTGAGAAAGAAAGATCT+GGG | - | chr8_1:20905695-20905714 | None:intergenic | 35.0% | |
TGAACTGAGAAAGAAAGATC+TGG | - | chr8_1:20905696-20905715 | None:intergenic | 35.0% | |
AATAACTAAACCTTAGGACC+AGG | + | chr8_1:20905786-20905805 | Msa1184780:intron | 35.0% | |
TGTTTGAAAAACGTATGACG+TGG | + | chr8_1:20905823-20905842 | Msa1184780:intron | 35.0% | |
! | ATCAGTTGCTATTACACTCT+CGG | - | chr8_1:20905873-20905892 | None:intergenic | 35.0% |
!! | GTGATACATACAAGTTGATC+GGG | + | chr8_1:20905980-20905999 | Msa1184780:intron | 35.0% |
! | TACAAGGTCGCAATTTTGTA+GGG | - | chr8_1:20906206-20906225 | None:intergenic | 35.0% |
! | TTACAAGGTCGCAATTTTGT+AGG | - | chr8_1:20906207-20906226 | None:intergenic | 35.0% |
! | GATAGGGTTTTCATCTAGTA+GGG | - | chr8_1:20906909-20906928 | None:intergenic | 35.0% |
TTAGAAGAGGATTTGAGCAA+TGG | + | chr8_1:20907101-20907120 | Msa1184780:intron | 35.0% | |
TAGAAGAGGATTTGAGCAAT+GGG | + | chr8_1:20907102-20907121 | Msa1184780:intron | 35.0% | |
! | GGTTTAATTTCTTGTGGCAT+TGG | + | chr8_1:20907622-20907641 | Msa1184780:intron | 35.0% |
TTGCTTGTGAATACTTTCGT+TGG | + | chr8_1:20907870-20907889 | Msa1184780:intron | 35.0% | |
TGCTTGTGAATACTTTCGTT+GGG | + | chr8_1:20907871-20907890 | Msa1184780:intron | 35.0% | |
ACTCTCCGAAGTTTAATTGT+TGG | + | chr8_1:20908020-20908039 | Msa1184780:intron | 35.0% | |
CTCTCCGAAGTTTAATTGTT+GGG | + | chr8_1:20908021-20908040 | Msa1184780:intron | 35.0% | |
CCTTCTAATCGAATAATGCT+TGG | - | chr8_1:20908053-20908072 | None:intergenic | 35.0% | |
CCAAGCATTATTCGATTAGA+AGG | + | chr8_1:20908050-20908069 | Msa1184780:intron | 35.0% | |
CGTGTGAGAGATGAAAAAAT+TGG | + | chr8_1:20908079-20908098 | Msa1184780:intron | 35.0% | |
AATACTCATGTCCCATTTAG+AGG | + | chr8_1:20908127-20908146 | Msa1184780:intron | 35.0% | |
ATACTCATGTCCCATTTAGA+GGG | + | chr8_1:20908128-20908147 | Msa1184780:intron | 35.0% | |
GAGGGATTAAAACGAAAAGT+TGG | - | chr8_1:20908442-20908461 | None:intergenic | 35.0% | |
! | ACAATTTTCAGTAGCTTCTC+AGG | + | chr8_1:20909092-20909111 | Msa1184780:intron | 35.0% |
! | GAAACTTTCTATTTTGTCCC+CGG | - | chr8_1:20909271-20909290 | None:intergenic | 35.0% |
CGTATTCTCCACGTAAAAAA+TGG | + | chr8_1:20909572-20909591 | Msa1184780:intron | 35.0% | |
TAGTGAATCCTATCACTAAG+TGG | + | chr8_1:20909667-20909686 | Msa1184780:intron | 35.0% | |
!! | ATACGAGTGTAATTGGTTTG+TGG | - | chr8_1:20909975-20909994 | None:intergenic | 35.0% |
ATGGAAAGTGATGAGAAAGA+GGG | - | chr8_1:20910004-20910023 | None:intergenic | 35.0% | |
TATGGAAAGTGATGAGAAAG+AGG | - | chr8_1:20910005-20910024 | None:intergenic | 35.0% | |
TTAATTCTCTACTATGGGTG+TGG | + | chr8_1:20910143-20910162 | Msa1184780:intron | 35.0% | |
CTCACGTACATTAGAAATCA+CGG | + | chr8_1:20910167-20910186 | Msa1184780:intron | 35.0% | |
! | GGTTACATGAATATTTTCGC+CGG | - | chr8_1:20910199-20910218 | None:intergenic | 35.0% |
CGAAAATATTCATGTAACCG+AGG | + | chr8_1:20910200-20910219 | Msa1184780:intron | 35.0% | |
!! | TAAAAGTGTTCGTCCTATTG+GGG | + | chr8_1:20910398-20910417 | Msa1184780:CDS | 35.0% |
TATAAATTGAGGGATTGGGA+AGG | + | chr8_1:20910489-20910508 | Msa1184780:CDS | 35.0% | |
ATAAATTGAGGGATTGGGAA+GGG | + | chr8_1:20910490-20910509 | Msa1184780:CDS | 35.0% | |
TATTCATTTCAGTTTGAGGG+TGG | + | chr8_1:20910527-20910546 | Msa1184780:CDS | 35.0% | |
AATTATGGTGGTCGATTAAC+TGG | + | chr8_1:20910609-20910628 | Msa1184780:CDS | 35.0% | |
!! | AACTCTAATGGTGTTGCTAT+TGG | + | chr8_1:20910651-20910670 | Msa1184780:CDS | 35.0% |
!! | TTGCTATTGGTATTCCCTTT+TGG | + | chr8_1:20910664-20910683 | Msa1184780:CDS | 35.0% |
TTTGGGTAATTCCACCAAAA+GGG | - | chr8_1:20905027-20905046 | None:intergenic | 35.0% | |
! | GTGCACTAAGTTTTCTACCA+TGG | + | chr8_1:20904486-20904505 | Msa1184780:exon | 40.0% |
TGTTTGTGAAGCTACAACCA+TGG | - | chr8_1:20904506-20904525 | None:intergenic | 40.0% | |
GTGCAATGCAAGAAGTTCAA+AGG | + | chr8_1:20904727-20904746 | Msa1184780:intron | 40.0% | |
!! | CAAAGGTATTCGACCTATTG+GGG | + | chr8_1:20904744-20904763 | Msa1184780:intron | 40.0% |
TTCAGATATTCTCAATGGCG+CGG | + | chr8_1:20904783-20904802 | Msa1184780:intron | 40.0% | |
!! | TATTCATTTTGGTGTGAGGG+TGG | + | chr8_1:20904873-20904892 | Msa1184780:intron | 40.0% |
AATTATGGTGGTCGGTTAAC+TGG | + | chr8_1:20904955-20904974 | Msa1184780:intron | 40.0% | |
TTAGACACTCTCTCTAGTAG+AGG | + | chr8_1:20905112-20905131 | Msa1184780:intron | 40.0% | |
TAGACACTCTCTCTAGTAGA+GGG | + | chr8_1:20905113-20905132 | Msa1184780:intron | 40.0% | |
AACTTAAAAGGCAAGTGACG+TGG | - | chr8_1:20905139-20905158 | None:intergenic | 40.0% | |
!! | GTTTAACCGGTTACTGGTTT+AGG | - | chr8_1:20905162-20905181 | None:intergenic | 40.0% |
AGCAACAATGGAGATTGAAG+AGG | - | chr8_1:20905278-20905297 | None:intergenic | 40.0% | |
ATCTCCATTGTTGCTGTAGA+AGG | + | chr8_1:20905283-20905302 | Msa1184780:intron | 40.0% | |
GACGAAGAAGAATTCGAGAT+GGG | - | chr8_1:20905457-20905476 | None:intergenic | 40.0% | |
TGACGAAGAAGAATTCGAGA+TGG | - | chr8_1:20905458-20905477 | None:intergenic | 40.0% | |
ATTGCCCACAGTGAAATTTC+GGG | + | chr8_1:20905578-20905597 | Msa1184780:intron | 40.0% | |
CTTTCCCGAAATTTCACTGT+GGG | - | chr8_1:20905585-20905604 | None:intergenic | 40.0% | |
TCTTTCCCGAAATTTCACTG+TGG | - | chr8_1:20905586-20905605 | None:intergenic | 40.0% | |
CAAAATCATAGCTTCTGCGA+CGG | - | chr8_1:20905721-20905740 | None:intergenic | 40.0% | |
TACTTGTTTACCTGGTCCTA+AGG | - | chr8_1:20905799-20905818 | None:intergenic | 40.0% | |
! | TAAACACTCTTCCGCTGATT+CGG | - | chr8_1:20905849-20905868 | None:intergenic | 40.0% |
! | CGATAGGGTTTTCATCTAGT+AGG | - | chr8_1:20906910-20906929 | None:intergenic | 40.0% |
! | TGTAAGACAAGTTAGTCTCG+TGG | - | chr8_1:20907394-20907413 | None:intergenic | 40.0% |
TTCGGGTGACAATGATGAAT+TGG | + | chr8_1:20907422-20907441 | Msa1184780:intron | 40.0% | |
TGGTAAGTCCCTTATACATG+TGG | + | chr8_1:20907451-20907470 | Msa1184780:intron | 40.0% | |
ACTCCTGACCACATGTATAA+GGG | - | chr8_1:20907462-20907481 | None:intergenic | 40.0% | |
AACTCCTGACCACATGTATA+AGG | - | chr8_1:20907463-20907482 | None:intergenic | 40.0% | |
! | GGCATTGGAACACACATAAA+TGG | + | chr8_1:20907637-20907656 | Msa1184780:intron | 40.0% |
TCATATATGCAAGCTGTGTC+TGG | - | chr8_1:20907985-20908004 | None:intergenic | 40.0% | |
TACTCATGTCCCATTTAGAG+GGG | + | chr8_1:20908129-20908148 | Msa1184780:intron | 40.0% | |
!!! | CTATTTTTTTTGGTGGTGGC+CGG | + | chr8_1:20909249-20909268 | Msa1184780:intron | 40.0% |
!!! | TATTTTTTTTGGTGGTGGCC+GGG | + | chr8_1:20909250-20909269 | Msa1184780:intron | 40.0% |
TCAAAATAGCTAAGCTCACG+AGG | + | chr8_1:20909293-20909312 | Msa1184780:intron | 40.0% | |
GTTGCATGCGCTGTTTATAA+TGG | - | chr8_1:20909861-20909880 | None:intergenic | 40.0% | |
TAAGTTGCAGACAAATTCCG+CGG | - | chr8_1:20909883-20909902 | None:intergenic | 40.0% | |
CGTGATTTCTAATGTACGTG+AGG | - | chr8_1:20910169-20910188 | None:intergenic | 40.0% | |
TAGTTGTTACACGACGAAGA+CGG | + | chr8_1:20910254-20910273 | Msa1184780:intron | 40.0% | |
GTCGTGCATGGAAAGAATTA+TGG | + | chr8_1:20910594-20910613 | Msa1184780:CDS | 40.0% | |
GTGCATGGAAAGAATTATGG+TGG | + | chr8_1:20910597-20910616 | Msa1184780:CDS | 40.0% | |
CGATTAACTGGAATGGATGT+TGG | + | chr8_1:20910621-20910640 | Msa1184780:CDS | 40.0% | |
!! | GTTGGTGTCAAGAACTCTAA+TGG | + | chr8_1:20910639-20910658 | Msa1184780:CDS | 40.0% |
! | CTATTGGTATTCCCTTTTGG+TGG | + | chr8_1:20910667-20910686 | Msa1184780:CDS | 40.0% |
GTTTGGGTAATTCCACCAAA+AGG | - | chr8_1:20905028-20905047 | None:intergenic | 40.0% | |
! | GATGCATACGTTGTTGTTCG+AGG | + | chr8_1:20904571-20904590 | Msa1184780:CDS | 45.0% |
TGAACATGCCATTGCATGCA+AGG | + | chr8_1:20904689-20904708 | Msa1184780:CDS | 45.0% | |
GTGATTGACCTTGCATGCAA+TGG | - | chr8_1:20904700-20904719 | None:intergenic | 45.0% | |
TGCAAGGTCAATCACGTTTG+AGG | + | chr8_1:20904705-20904724 | Msa1184780:intron | 45.0% | |
TATTCTCAATGGCGCGGTAT+CGG | + | chr8_1:20904789-20904808 | Msa1184780:intron | 45.0% | |
AATTGAGGAATTGGGAAGGG+AGG | + | chr8_1:20904839-20904858 | Msa1184780:intron | 45.0% | |
AATTGGGAAGGGAGGCAAAA+TGG | + | chr8_1:20904847-20904866 | Msa1184780:intron | 45.0% | |
TCGGTAACTGATCTTTGCTC+CGG | - | chr8_1:20904904-20904923 | None:intergenic | 45.0% | |
!! | GTGGCGGATGGAAAGAATTA+TGG | + | chr8_1:20904940-20904959 | Msa1184780:intron | 45.0% |
GCGGATGGAAAGAATTATGG+TGG | + | chr8_1:20904943-20904962 | Msa1184780:intron | 45.0% | |
CGGTTAACTGGAATGGATGT+TGG | + | chr8_1:20904967-20904986 | Msa1184780:intron | 45.0% | |
!! | GTTGGTGCCAAGAACTCTAA+TGG | + | chr8_1:20904985-20905004 | Msa1184780:intron | 45.0% |
GGAGATTGAAGAGGTTGAAC+CGG | - | chr8_1:20905269-20905288 | None:intergenic | 45.0% | |
CCTTCCTTCTACAGCAACAA+TGG | - | chr8_1:20905290-20905309 | None:intergenic | 45.0% | |
CCATTGTTGCTGTAGAAGGA+AGG | + | chr8_1:20905287-20905306 | Msa1184780:intron | 45.0% | |
!! | TCGTCATTCCAAGCATTGAC+AGG | + | chr8_1:20905472-20905491 | Msa1184780:intron | 45.0% |
! | CGTCGCAGAAGCTATGATTT+TGG | + | chr8_1:20905719-20905738 | Msa1184780:intron | 45.0% |
TCGGCACACATATCTTGCAA+TGG | - | chr8_1:20906107-20906126 | None:intergenic | 45.0% | |
AGTCCCTTATACATGTGGTC+AGG | + | chr8_1:20907456-20907475 | Msa1184780:intron | 45.0% | |
GTAAACCTGCAGAACACACA+AGG | - | chr8_1:20907537-20907556 | None:intergenic | 45.0% | |
! | ACTTCGGAGAGTGTACCTAA+TGG | - | chr8_1:20908012-20908031 | None:intergenic | 45.0% |
!!! | ATTTTTTTTGGTGGTGGCCG+GGG | + | chr8_1:20909251-20909270 | Msa1184780:intron | 45.0% |
GATGGGATCCACTTAGTGAT+AGG | - | chr8_1:20909678-20909697 | None:intergenic | 45.0% | |
AACGACGACATATGCATCCT+CGG | - | chr8_1:20910220-20910239 | None:intergenic | 45.0% | |
TGAACATGCCATTGCATGCA+AGG | + | chr8_1:20904689-20904708 | Msa1184780:CDS | 45.0% | |
GTGATTGACCTTGCATGCAA+TGG | - | chr8_1:20904700-20904719 | None:intergenic | 45.0% | |
TGCAAGGTCAATCACGTTTG+AGG | + | chr8_1:20904705-20904724 | Msa1184780:intron | 45.0% | |
GATTGGGAAGGGAAGCAAAA+TGG | + | chr8_1:20910501-20910520 | Msa1184780:CDS | 45.0% | |
TGGTGGTCGATTAACTGGAA+TGG | + | chr8_1:20910614-20910633 | Msa1184780:CDS | 45.0% | |
!! | TAAATATTTAAATAATGTTT+GGG | - | chr8_1:20905044-20905063 | None:intergenic | 5.0% |
!! | ATAAATATTTAAATAATGTT+TGG | - | chr8_1:20905045-20905064 | None:intergenic | 5.0% |
!! | TATATTAATATATTACTATT+AGG | + | chr8_1:20906769-20906788 | Msa1184780:intron | 5.0% |
!! | TAAAAAAAATCTAATAAATA+TGG | - | chr8_1:20906994-20907013 | None:intergenic | 5.0% |
!!! | AATAGTTTTTTTTTTTTTAA+AGG | + | chr8_1:20908385-20908404 | Msa1184780:intron | 5.0% |
!!! | ATAGTTTTTTTTTTTTTAAA+GGG | + | chr8_1:20908386-20908405 | Msa1184780:intron | 5.0% |
!!! | TAAAAAAATTCTATTTTTTT+GGG | - | chr8_1:20908597-20908616 | None:intergenic | 5.0% |
!!! | TAAAAAATTCTAATTTTTTT+TGG | + | chr8_1:20908687-20908706 | Msa1184780:intron | 5.0% |
!!! | AAAAAATTCTAATTTTTTTT+GGG | + | chr8_1:20908688-20908707 | Msa1184780:intron | 5.0% |
!!! | TTTTTTTTTTTGAAAAAAAA+TGG | + | chr8_1:20909792-20909811 | Msa1184780:intron | 5.0% |
AGGTATTCGACCTATTGGGG+TGG | + | chr8_1:20904747-20904766 | Msa1184780:intron | 50.0% | |
GCAATTCTTGCCACCCCAAT+AGG | - | chr8_1:20904760-20904779 | None:intergenic | 50.0% | |
GGAGCAAAGATCAGTTACCG+AGG | + | chr8_1:20904903-20904922 | Msa1184780:intron | 50.0% | |
GCAAAGATCAGTTACCGAGG+CGG | + | chr8_1:20904906-20904925 | Msa1184780:intron | 50.0% | |
TGGTGGTCGGTTAACTGGAA+TGG | + | chr8_1:20904960-20904979 | Msa1184780:intron | 50.0% | |
CACAGTCACTCTTGCACTCT+CGG | + | chr8_1:20905089-20905108 | Msa1184780:intron | 50.0% | |
GTGCCTTGTCGTTGTGATGT+TGG | + | chr8_1:20905666-20905685 | Msa1184780:intron | 50.0% | |
CCACCAACATCACAACGACA+AGG | - | chr8_1:20905672-20905691 | None:intergenic | 50.0% | |
CCTTGTCGTTGTGATGTTGG+TGG | + | chr8_1:20905669-20905688 | Msa1184780:intron | 50.0% | |
ACCTGCAGAACACACAAGGT+GGG | - | chr8_1:20907533-20907552 | None:intergenic | 50.0% | |
AACCTGCAGAACACACAAGG+TGG | - | chr8_1:20907534-20907553 | None:intergenic | 50.0% | |
ATAAACAGCGCATGCAACCG+CGG | + | chr8_1:20909863-20909882 | Msa1184780:intron | 50.0% | |
GATGCATATGTCGTCGTTCG+AGG | + | chr8_1:20910222-20910241 | Msa1184780:intron | 50.0% | |
AAGTGTTCGTCCTATTGGGG+TGG | + | chr8_1:20910401-20910420 | Msa1184780:CDS | 50.0% | |
GCAATTCTTGCCACCCCAAT+AGG | - | chr8_1:20904760-20904779 | None:intergenic | 50.0% | |
!! | GGTGGCAAGAATTGCCGTTT+TGG | + | chr8_1:20910419-20910438 | Msa1184780:CDS | 50.0% |
ACGGTAACCGATCTTTGCTC+CGG | - | chr8_1:20910558-20910577 | None:intergenic | 50.0% | |
! | TACCGTGGTGGAGAAGCAAA+CGG | + | chr8_1:20910572-20910591 | Msa1184780:CDS | 50.0% |
TGGTGTGAGGGTGGTTCTTC+CGG | + | chr8_1:20904882-20904901 | Msa1184780:intron | 55.0% | |
TACCGAGGCGGAGAACCAAA+CGG | + | chr8_1:20904918-20904937 | Msa1184780:intron | 55.0% | |
TCTTTCCATCCGCCACCGTT+TGG | - | chr8_1:20904936-20904955 | None:intergenic | 55.0% | |
! | CGAGAGTGCAAGAGTGACTG+TGG | - | chr8_1:20905091-20905110 | None:intergenic | 55.0% |
ACTGCGTGCGAAAAGAACGC+CGG | + | chr8_1:20905247-20905266 | Msa1184780:intron | 55.0% | |
GTATGACGTGGCCGAATCAG+CGG | + | chr8_1:20905835-20905854 | Msa1184780:intron | 55.0% | |
ACCCACCTTGTGTGTTCTGC+AGG | + | chr8_1:20907529-20907548 | Msa1184780:intron | 55.0% | |
CGTGGAGAATACGTGCTGAG+CGG | - | chr8_1:20909565-20909584 | None:intergenic | 55.0% | |
CAGTTTGAGGGTGGTTGTGC+CGG | + | chr8_1:20910536-20910555 | Msa1184780:CDS | 55.0% | |
GGTTGTGCCGGAGCAAAGAT+CGG | + | chr8_1:20910548-20910567 | Msa1184780:CDS | 55.0% | |
GGAGCAAAGATCGGTTACCG+TGG | + | chr8_1:20910557-20910576 | Msa1184780:CDS | 55.0% | |
GCAAAGATCGGTTACCGTGG+TGG | + | chr8_1:20910560-20910579 | Msa1184780:CDS | 55.0% | |
GACCGTTTGCTTCTCCACCA+CGG | - | chr8_1:20910577-20910596 | None:intergenic | 55.0% | |
GAGAAGCAAACGGTCGTGCA+TGG | + | chr8_1:20910582-20910601 | Msa1184780:CDS | 55.0% | |
!! | CACCGTTTGGTTCTCCGCCT+CGG | - | chr8_1:20904923-20904942 | None:intergenic | 60.0% |
!! | GAGAACCAAACGGTGGCGGA+TGG | + | chr8_1:20904928-20904947 | Msa1184780:intron | 60.0% |
CGAGGCGGAGAACCAAACGG+TGG | + | chr8_1:20904921-20904940 | Msa1184780:intron | 65.0% | |
GGCGGAGAACCAAACGGTGG+CGG | + | chr8_1:20904924-20904943 | Msa1184780:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_1 | gene | 20904434 | 20910710 | 20904434 | ID=Msa1184780;Name=Msa1184780 |
chr8_1 | mRNA | 20904434 | 20910710 | 20904434 | ID=Msa1184780-mRNA-1;Parent=Msa1184780;Name=Msa1184780-mRNA-1;_AED=0.33;_eAED=0.34;_QI=71|1|0.5|1|0|0|2|0|183 |
chr8_1 | exon | 20904434 | 20904710 | 20904434 | ID=Msa1184780-mRNA-1:exon:7952;Parent=Msa1184780-mRNA-1 |
chr8_1 | exon | 20910365 | 20910710 | 20910365 | ID=Msa1184780-mRNA-1:exon:7953;Parent=Msa1184780-mRNA-1 |
chr8_1 | five_prime_UTR | 20904434 | 20904504 | 20904434 | ID=Msa1184780-mRNA-1:five_prime_utr;Parent=Msa1184780-mRNA-1 |
chr8_1 | CDS | 20904505 | 20904710 | 20904505 | ID=Msa1184780-mRNA-1:cds;Parent=Msa1184780-mRNA-1 |
chr8_1 | CDS | 20910365 | 20910710 | 20910365 | ID=Msa1184780-mRNA-1:cds;Parent=Msa1184780-mRNA-1 |
Gene Sequence |
Protein sequence |