Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1280080 | sp|Q9C8S6|PP16B_ARATH | 57.432 | 148 | 62 | 1 | 1 | 148 | 1 | 147 | 1.60e-54 | 171 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1280080 | G7LCN5 | 98.649 | 148 | 2 | 0 | 1 | 148 | 1 | 148 | 1.02e-103 | 302 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0358470 | Msa1280080 | 0.807888 | 4.055863e-50 | -8.615850e-47 |
| Msa1184680 | Msa1280080 | 0.854203 | 1.438920e-61 | -8.615850e-47 |
| Msa0579080 | Msa1280080 | 0.802911 | 4.480215e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1280080 | MtrunA17_Chr8g0350021 | 98.649 | 148 | 2 | 0 | 1 | 148 | 1 | 148 | 1.96e-107 | 302 |
| Msa1280080 | MtrunA17_Chr8g0350031 | 82.432 | 148 | 26 | 0 | 1 | 148 | 1 | 148 | 2.30e-92 | 264 |
| Msa1280080 | MtrunA17_Chr5g0435251 | 40.645 | 155 | 77 | 5 | 1 | 144 | 1 | 151 | 3.54e-35 | 119 |
| Msa1280080 | MtrunA17_Chr5g0435261 | 39.241 | 158 | 80 | 5 | 1 | 145 | 1 | 155 | 7.89e-32 | 111 |
| Msa1280080 | MtrunA17_Chr1g0147471 | 69.355 | 62 | 19 | 0 | 25 | 86 | 1 | 62 | 8.08e-29 | 100 |
| Msa1280080 | MtrunA17_Chr7g0246521 | 60.377 | 53 | 21 | 0 | 25 | 77 | 1 | 53 | 6.65e-21 | 80.5 |
| Msa1280080 | MtrunA17_Chr8g0348941 | 28.571 | 147 | 93 | 2 | 1 | 135 | 1 | 147 | 1.43e-16 | 72.8 |
| Msa1280080 | MtrunA17_Chr3g0137471 | 32.031 | 128 | 83 | 2 | 3 | 129 | 465 | 589 | 1.25e-13 | 67.0 |
| Msa1280080 | MtrunA17_Chr5g0393481 | 27.119 | 118 | 84 | 2 | 6 | 122 | 15 | 131 | 2.08e-12 | 62.4 |
| Msa1280080 | MtrunA17_Chr4g0064531 | 33.588 | 131 | 81 | 4 | 3 | 131 | 440 | 566 | 2.69e-12 | 63.2 |
| Msa1280080 | MtrunA17_Chr2g0290631 | 37.363 | 91 | 55 | 2 | 4 | 94 | 6 | 94 | 3.46e-12 | 60.5 |
| Msa1280080 | MtrunA17_Chr5g0393541 | 29.412 | 119 | 82 | 2 | 6 | 123 | 11 | 128 | 3.50e-12 | 62.4 |
| Msa1280080 | MtrunA17_Chr2g0292461 | 37.363 | 91 | 55 | 2 | 4 | 94 | 173 | 261 | 2.22e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1280080 | AT1G63220.1 | 57.432 | 148 | 62 | 1 | 1 | 148 | 1 | 147 | 1.63e-55 | 171 |
| Msa1280080 | AT1G63220.2 | 52.027 | 148 | 56 | 2 | 1 | 148 | 1 | 133 | 2.27e-45 | 145 |
| Msa1280080 | AT3G55470.2 | 34.177 | 158 | 90 | 5 | 1 | 147 | 1 | 155 | 1.44e-23 | 90.5 |
| Msa1280080 | AT3G55470.1 | 34.591 | 159 | 89 | 6 | 1 | 147 | 1 | 156 | 1.30e-22 | 87.8 |
| Msa1280080 | AT4G00467.2 | 30.282 | 142 | 88 | 3 | 1 | 131 | 1 | 142 | 6.39e-15 | 68.6 |
| Msa1280080 | AT4G00467.1 | 30.282 | 142 | 88 | 3 | 1 | 131 | 1 | 142 | 9.80e-15 | 68.6 |
| Msa1280080 | AT5G47710.1 | 40.860 | 93 | 53 | 2 | 2 | 94 | 4 | 94 | 3.60e-14 | 66.2 |
| Msa1280080 | AT5G47710.2 | 40.860 | 93 | 53 | 2 | 2 | 94 | 4 | 94 | 3.60e-14 | 66.2 |
| Msa1280080 | AT5G47710.3 | 40.860 | 93 | 53 | 2 | 2 | 94 | 4 | 94 | 3.60e-14 | 66.2 |
| Msa1280080 | AT5G47710.4 | 40.860 | 93 | 53 | 2 | 2 | 94 | 4 | 94 | 3.60e-14 | 66.2 |
| Msa1280080 | AT5G04220.1 | 31.646 | 158 | 93 | 5 | 2 | 147 | 37 | 191 | 1.01e-12 | 64.3 |
| Msa1280080 | AT5G04220.3 | 31.646 | 158 | 93 | 5 | 2 | 147 | 197 | 351 | 2.09e-12 | 63.9 |
| Msa1280080 | AT5G04220.2 | 31.646 | 158 | 93 | 5 | 2 | 147 | 259 | 413 | 3.28e-12 | 63.2 |
| Msa1280080 | AT4G34150.1 | 27.966 | 118 | 83 | 2 | 6 | 122 | 12 | 128 | 4.92e-12 | 62.0 |
| Msa1280080 | AT4G21160.2 | 35.165 | 91 | 57 | 2 | 4 | 94 | 181 | 269 | 1.00e-10 | 58.9 |
| Msa1280080 | AT4G21160.3 | 35.165 | 91 | 57 | 2 | 4 | 94 | 181 | 269 | 1.00e-10 | 58.9 |
| Msa1280080 | AT4G21160.1 | 35.165 | 91 | 57 | 2 | 4 | 94 | 181 | 269 | 1.00e-10 | 58.9 |
| Msa1280080 | AT4G21160.4 | 35.165 | 91 | 57 | 2 | 4 | 94 | 181 | 269 | 1.00e-10 | 58.9 |
Find 38 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGGATTATTATCTCTAAA+AGG | 0.235203 | 8_3:+18025689 | None:intergenic |
| CATCCATGTAATTCTTGATT+TGG | 0.294132 | 8_3:+18023462 | None:intergenic |
| AAAGGGACTCAACATTTAAA+AGG | 0.313164 | 8_3:-18025784 | Msa1280080:five_prime_UTR |
| TACTATATATACACTGATTC+AGG | 0.357225 | 8_3:-18025729 | Msa1280080:five_prime_UTR |
| ACAAGTTTGTAAGAATTCTC+TGG | 0.370783 | 8_3:+18023726 | None:intergenic |
| AAAATATTGTGGAGAGGTTA+AGG | 0.388006 | 8_3:-18023694 | Msa1280080:CDS |
| TGAGCTCAATCTAAAGATAA+TGG | 0.401742 | 8_3:-18024122 | Msa1280080:CDS |
| TATAGTGCTGATGATAATCT+TGG | 0.411031 | 8_3:-18024088 | Msa1280080:CDS |
| ATAACATAGTTTATGTCAAA+AGG | 0.450984 | 8_3:+18023358 | None:intergenic |
| CTTATGTGATCCTCACATAC+AGG | 0.472608 | 8_3:-18024841 | Msa1280080:CDS |
| GAAATGTCTCATTCCATTGA+GGG | 0.473516 | 8_3:+18024170 | None:intergenic |
| CAATCTAAAGATAATGGAAA+AGG | 0.492449 | 8_3:-18024116 | Msa1280080:CDS |
| TCTTGAATCACTGTCTCTAA+AGG | 0.495815 | 8_3:+18023759 | None:intergenic |
| CTGCCAAATCAAGAATTACA+TGG | 0.514216 | 8_3:-18023465 | Msa1280080:three_prime_UTR |
| GTGCTGGATCCAACCCTCAA+TGG | 0.516268 | 8_3:-18024183 | Msa1280080:CDS |
| AGAAATGTCTCATTCCATTG+AGG | 0.522164 | 8_3:+18024169 | None:intergenic |
| TGTCTCATTCCATTGAGGGT+TGG | 0.547968 | 8_3:+18024174 | None:intergenic |
| CTGTATGTGAGGATCACATA+AGG | 0.549620 | 8_3:+18024842 | None:intergenic |
| GTGGATGGAAACAATCGGCT+AGG | 0.550623 | 8_3:-18023521 | Msa1280080:CDS |
| GACTGGTGGATGGAAACAAT+CGG | 0.565129 | 8_3:-18023526 | Msa1280080:CDS |
| GGGACTATTGAAGTGAATGA+AGG | 0.567056 | 8_3:-18023500 | Msa1280080:exon |
| AAGAAGAGGAGACTGGTGGA+TGG | 0.575646 | 8_3:-18023536 | Msa1280080:CDS |
| TACAATCAAGAAGAGGAGAC+TGG | 0.590424 | 8_3:-18023543 | Msa1280080:CDS |
| GAATTCTTACAAACTTGTGA+AGG | 0.595780 | 8_3:-18023721 | Msa1280080:CDS |
| GCTCCTGTGCCCTGTATGTG+AGG | 0.595785 | 8_3:+18024831 | None:intergenic |
| CACAAGAGTACTGTGCAAGA+AGG | 0.601180 | 8_3:-18024809 | Msa1280080:intron |
| TGGATGGAAACAATCGGCTA+GGG | 0.602214 | 8_3:-18023520 | Msa1280080:CDS |
| TTATGTGATCCTCACATACA+GGG | 0.628264 | 8_3:-18024840 | Msa1280080:CDS |
| TTTAGAGACAGTGATTCAAG+AGG | 0.636421 | 8_3:-18023757 | Msa1280080:CDS |
| TTAGAGACAGTGATTCAAGA+GGG | 0.640617 | 8_3:-18023756 | Msa1280080:CDS |
| TGGGGATCGATGTGATTGTG+AGG | 0.641837 | 8_3:-18023273 | None:intergenic |
| ACGGAGTTACAATCAAGAAG+AGG | 0.650435 | 8_3:-18023550 | Msa1280080:CDS |
| GATCCTCACATACAGGGCAC+AGG | 0.652687 | 8_3:-18024834 | Msa1280080:CDS |
| AATCAAGAAGAGGAGACTGG+TGG | 0.655585 | 8_3:-18023540 | Msa1280080:CDS |
| GGTTGCAGAGAAACTATGAA+CGG | 0.677708 | 8_3:-18023569 | Msa1280080:intron |
| AATCAGAGAAAGATGCCTCG+TGG | 0.689332 | 8_3:-18025634 | Msa1280080:exon |
| ATATTGTGGAGAGGTTAAGG+TGG | 0.690996 | 8_3:-18023691 | Msa1280080:CDS |
| ACAACTTCAAGCGTTCCACG+AGG | 0.769497 | 8_3:+18025619 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACATTATTATATGAATTT+AGG | + | chr8_3:18024113-18024132 | None:intergenic | 10.0% |
| !!! | ATCAATTTTAATAATCAAAT+TGG | + | chr8_3:18024141-18024160 | None:intergenic | 10.0% |
| !! | AATCATAAATTAATAATTCA+TGG | + | chr8_3:18024676-18024695 | None:intergenic | 10.0% |
| !!! | TTATTAATTTATGATTTTCT+TGG | - | chr8_3:18024680-18024699 | Msa1280080:intron | 10.0% |
| !!! | TATTAATTTATGATTTTCTT+GGG | - | chr8_3:18024681-18024700 | Msa1280080:intron | 10.0% |
| !!! | TAATAAGATAATAATTTTTC+GGG | + | chr8_3:18024729-18024748 | None:intergenic | 10.0% |
| !!! | AGTATTAAATTGATTTTGAT+TGG | + | chr8_3:18023315-18023334 | None:intergenic | 15.0% |
| !! | TATGATAAAACTAAAGTAAT+TGG | + | chr8_3:18023931-18023950 | None:intergenic | 15.0% |
| !!! | AGTTTTTCAATTTTTTACAT+TGG | - | chr8_3:18024757-18024776 | Msa1280080:intron | 15.0% |
| !!! | TCTAAAATAATAAATTTGTC+CGG | + | chr8_3:18024795-18024814 | None:intergenic | 15.0% |
| !! | ACAATATAATGAATAATTTC+AGG | - | chr8_3:18024855-18024874 | Msa1280080:CDS | 15.0% |
| !! | ACATTTAAAAGGAAAAATGT+TGG | - | chr8_3:18023287-18023306 | Msa1280080:three_prime_UTR | 20.0% |
| !!! | ATCACAAAATTTCATACTTT+TGG | + | chr8_3:18023565-18023584 | None:intergenic | 20.0% |
| !!! | ACAAATTTTTCATCTTAAGT+TGG | - | chr8_3:18023598-18023617 | Msa1280080:intron | 20.0% |
| !!! | ATTGTGCTATTATATGATTA+TGG | + | chr8_3:18023749-18023768 | None:intergenic | 20.0% |
| !! | TAAATTAATAATGTCAGCAT+CGG | - | chr8_3:18024374-18024393 | Msa1280080:intron | 20.0% |
| !!! | AATGTTGTAATTTGTAATGT+TGG | - | chr8_3:18025255-18025274 | Msa1280080:intron | 20.0% |
| !!! | ATAAAAGTATGAAGAAAAAC+AGG | + | chr8_3:18025432-18025451 | None:intergenic | 20.0% |
| !!! | ATTTTAATCTCTGTATTTTC+TGG | - | chr8_3:18025649-18025668 | Msa1280080:five_prime_UTR | 20.0% |
| !! | ATAACATAGTTTATGTCAAA+AGG | + | chr8_3:18025705-18025724 | None:intergenic | 20.0% |
| !!! | ATAAGCCTTGTTATATTTTT+GGG | - | chr8_3:18025768-18025787 | Msa1280080:five_prime_UTR | 20.0% |
| !!! | TACTATATATACACTGATTC+AGG | - | chr8_3:18023331-18023350 | Msa1280080:three_prime_UTR | 25.0% |
| ! | TCTGGATTATTATCTCTAAA+AGG | + | chr8_3:18023374-18023393 | None:intergenic | 25.0% |
| ! | GAAACAACAAATATGTAGAT+CGG | + | chr8_3:18023625-18023644 | None:intergenic | 25.0% |
| ! | ATAGATTCACTAATTCAATC+AGG | + | chr8_3:18023686-18023705 | None:intergenic | 25.0% |
| ! | TTGAATTAGTGAATCTATTC+AGG | - | chr8_3:18023688-18023707 | Msa1280080:CDS | 25.0% |
| ! | ACTTCGCTAAAAATGAAAAA+AGG | + | chr8_3:18024021-18024040 | None:intergenic | 25.0% |
| !! | GATTGTATTTTGTACTCTAT+CGG | - | chr8_3:18024050-18024069 | Msa1280080:intron | 25.0% |
| ! | GTACAATAAATGTAAACAAG+AGG | - | chr8_3:18024607-18024626 | Msa1280080:intron | 25.0% |
| !!! | CAATCTAAAGATAATGGAAA+AGG | - | chr8_3:18024944-18024963 | Msa1280080:intron | 25.0% |
| ! | CATGAGTTCTTATTGAATAT+CGG | + | chr8_3:18025102-18025121 | None:intergenic | 25.0% |
| ! | TAACTGAAAAAGTTGAATGT+TGG | - | chr8_3:18025162-18025181 | Msa1280080:intron | 25.0% |
| !! | AACTAGTTTACACTTAAAAG+AGG | - | chr8_3:18025228-18025247 | Msa1280080:intron | 25.0% |
| !! | TAAAATGCACTATCGATTAT+TGG | - | chr8_3:18025470-18025489 | Msa1280080:intron | 25.0% |
| !!! | GATAAGCCTTGTTATATTTT+TGG | - | chr8_3:18025767-18025786 | Msa1280080:five_prime_UTR | 25.0% |
| !!! | TAAGCCTTGTTATATTTTTG+GGG | - | chr8_3:18025769-18025788 | Msa1280080:five_prime_UTR | 25.0% |
| AAAGGGACTCAACATTTAAA+AGG | - | chr8_3:18023276-18023295 | Msa1280080:three_prime_UTR | 30.0% | |
| !! | TTGTTAAGAGCTTTTGATTC+TGG | + | chr8_3:18023392-18023411 | None:intergenic | 30.0% |
| TTCGATGCAGAAATTTCAAT+GGG | + | chr8_3:18023534-18023553 | None:intergenic | 30.0% | |
| AAATAAACACAGTGACAAGA+CGG | + | chr8_3:18023820-18023839 | None:intergenic | 30.0% | |
| CCTGAATTAACAGTATACAA+CGG | + | chr8_3:18023972-18023991 | None:intergenic | 30.0% | |
| AACAAAGATCAAGACTTTAG+AGG | + | chr8_3:18024175-18024194 | None:intergenic | 30.0% | |
| ACTGTACATACCAAACAAAA+AGG | - | chr8_3:18024476-18024495 | Msa1280080:intron | 30.0% | |
| !! | GACTAATTTGCCTTTTTGTT+TGG | + | chr8_3:18024489-18024508 | None:intergenic | 30.0% |
| TTGGGACCGAAAATTATAAA+GGG | - | chr8_3:18024699-18024718 | Msa1280080:intron | 30.0% | |
| ! | GGAGATCCCTTTATAATTTT+CGG | + | chr8_3:18024708-18024727 | None:intergenic | 30.0% |
| ! | TAATGAATAATTTCAGGTGC+TGG | - | chr8_3:18024861-18024880 | Msa1280080:intron | 30.0% |
| TGAGCTCAATCTAAAGATAA+TGG | - | chr8_3:18024938-18024957 | Msa1280080:intron | 30.0% | |
| !! | TATAGTGCTGATGATAATCT+TGG | - | chr8_3:18024972-18024991 | Msa1280080:intron | 30.0% |
| TTAAATTGCAGCAAGAAAGT+TGG | + | chr8_3:18025140-18025159 | None:intergenic | 30.0% | |
| ACAAGTTTGTAAGAATTCTC+TGG | + | chr8_3:18025337-18025356 | None:intergenic | 30.0% | |
| GAATTCTTACAAACTTGTGA+AGG | - | chr8_3:18025339-18025358 | Msa1280080:intron | 30.0% | |
| GTGAAGGATGAAAAATATTG+TGG | - | chr8_3:18025355-18025374 | Msa1280080:intron | 30.0% | |
| AAAATATTGTGGAGAGGTTA+AGG | - | chr8_3:18025366-18025385 | Msa1280080:intron | 30.0% | |
| CATCCATGTAATTCTTGATT+TGG | + | chr8_3:18025601-18025620 | None:intergenic | 30.0% | |
| !!! | GTTGTTTTGATCAGTGCTAA+AGG | - | chr8_3:18023459-18023478 | Msa1280080:three_prime_UTR | 35.0% |
| GTTCGATGCAGAAATTTCAA+TGG | + | chr8_3:18023535-18023554 | None:intergenic | 35.0% | |
| GAAATTTCTGCATCGAACAA+TGG | - | chr8_3:18023537-18023556 | Msa1280080:CDS | 35.0% | |
| TAATAGCACAATTCACAAGC+CGG | - | chr8_3:18023757-18023776 | Msa1280080:CDS | 35.0% | |
| CACGATGATGATCAACAATA+GGG | + | chr8_3:18023783-18023802 | None:intergenic | 35.0% | |
| TAATTGGAATACTCATGCCT+CGG | + | chr8_3:18023915-18023934 | None:intergenic | 35.0% | |
| CCGTTGTATACTGTTAATTC+AGG | - | chr8_3:18023969-18023988 | Msa1280080:intron | 35.0% | |
| TTATGTGATCCTCACATACA+GGG | - | chr8_3:18024220-18024239 | Msa1280080:intron | 35.0% | |
| ACTACTGTGTTCATATGCAT+TGG | - | chr8_3:18024563-18024582 | Msa1280080:intron | 35.0% | |
| CTTGGGACCGAAAATTATAA+AGG | - | chr8_3:18024698-18024717 | Msa1280080:intron | 35.0% | |
| !!! | TTTTTTACATTGGCCCAAGT+CGG | - | chr8_3:18024767-18024786 | Msa1280080:intron | 35.0% |
| GAAATGTCTCATTCCATTGA+GGG | + | chr8_3:18024893-18024912 | None:intergenic | 35.0% | |
| AGAAATGTCTCATTCCATTG+AGG | + | chr8_3:18024894-18024913 | None:intergenic | 35.0% | |
| CTCGAAAGAATACGAATCAA+GGG | + | chr8_3:18025040-18025059 | None:intergenic | 35.0% | |
| ACTCGAAAGAATACGAATCA+AGG | + | chr8_3:18025041-18025060 | None:intergenic | 35.0% | |
| TAAGAACTCATGATATTGCG+AGG | - | chr8_3:18025110-18025129 | Msa1280080:intron | 35.0% | |
| TCTTGAATCACTGTCTCTAA+AGG | + | chr8_3:18025304-18025323 | None:intergenic | 35.0% | |
| TTTAGAGACAGTGATTCAAG+AGG | - | chr8_3:18025303-18025322 | Msa1280080:intron | 35.0% | |
| TTAGAGACAGTGATTCAAGA+GGG | - | chr8_3:18025304-18025323 | Msa1280080:intron | 35.0% | |
| GGATGAAAAATATTGTGGAG+AGG | - | chr8_3:18025360-18025379 | Msa1280080:intron | 35.0% | |
| ! | CTTTTACACCTGAGGTAATA+AGG | - | chr8_3:18025398-18025417 | Msa1280080:intron | 35.0% |
| !! | TTCTATAGCCTTATTACCTC+AGG | + | chr8_3:18025409-18025428 | None:intergenic | 35.0% |
| CTGCCAAATCAAGAATTACA+TGG | - | chr8_3:18025595-18025614 | Msa1280080:CDS | 35.0% | |
| CGATCCCCAAAAATATAACA+AGG | + | chr8_3:18025776-18025795 | None:intergenic | 35.0% | |
| ATGATGATCAACAATAGGGC+CGG | + | chr8_3:18023779-18023798 | None:intergenic | 40.0% | |
| CCACGATGATGATCAACAAT+AGG | + | chr8_3:18023784-18023803 | None:intergenic | 40.0% | |
| CCTATTGTTGATCATCATCG+TGG | - | chr8_3:18023781-18023800 | Msa1280080:intron | 40.0% | |
| AATTGGAATACTCATGCCTC+GGG | + | chr8_3:18023914-18023933 | None:intergenic | 40.0% | |
| CTGTATGTGAGGATCACATA+AGG | + | chr8_3:18024221-18024240 | None:intergenic | 40.0% | |
| CTTATGTGATCCTCACATAC+AGG | - | chr8_3:18024219-18024238 | Msa1280080:intron | 40.0% | |
| CGCTGCAACGTAATTATAAG+AGG | + | chr8_3:18024516-18024535 | None:intergenic | 40.0% | |
| CTAATTTACGTTGAGTCCCA+AGG | + | chr8_3:18024541-18024560 | None:intergenic | 40.0% | |
| ! | TTTTTACATTGGCCCAAGTC+GGG | - | chr8_3:18024768-18024787 | Msa1280080:intron | 40.0% |
| ATATTGTGGAGAGGTTAAGG+TGG | - | chr8_3:18025369-18025388 | Msa1280080:intron | 40.0% | |
| GGTTGCAGAGAAACTATGAA+CGG | - | chr8_3:18025491-18025510 | Msa1280080:intron | 40.0% | |
| ACGGAGTTACAATCAAGAAG+AGG | - | chr8_3:18025510-18025529 | Msa1280080:intron | 40.0% | |
| TACAATCAAGAAGAGGAGAC+TGG | - | chr8_3:18025517-18025536 | Msa1280080:intron | 40.0% | |
| GGGACTATTGAAGTGAATGA+AGG | - | chr8_3:18025560-18025579 | Msa1280080:intron | 40.0% | |
| AATCAGAGAAAGATGCCTCG+TGG | - | chr8_3:18023426-18023445 | Msa1280080:three_prime_UTR | 45.0% | |
| TGTTGATCATCATCGTGGTG+CGG | - | chr8_3:18023786-18023805 | Msa1280080:intron | 45.0% | |
| TGTCTACATTGCATAACCCG+AGG | - | chr8_3:18023895-18023914 | Msa1280080:intron | 45.0% | |
| !! | CACAAGAGTACTGTGCAAGA+AGG | - | chr8_3:18024251-18024270 | Msa1280080:intron | 45.0% |
| AATTACGTTGCAGCGAACCT+TGG | - | chr8_3:18024521-18024540 | Msa1280080:intron | 45.0% | |
| ATTACGTTGCAGCGAACCTT+GGG | - | chr8_3:18024522-18024541 | Msa1280080:intron | 45.0% | |
| TGTCTCATTCCATTGAGGGT+TGG | + | chr8_3:18024889-18024908 | None:intergenic | 45.0% | |
| AATCAAGAAGAGGAGACTGG+TGG | - | chr8_3:18025520-18025539 | Msa1280080:intron | 45.0% | |
| ! | GACTGGTGGATGGAAACAAT+CGG | - | chr8_3:18025534-18025553 | Msa1280080:intron | 45.0% |
| TGGATGGAAACAATCGGCTA+GGG | - | chr8_3:18025540-18025559 | Msa1280080:intron | 45.0% | |
| !!! | ATAATAAGATAATAATTTTT+CGG | + | chr8_3:18024730-18024749 | None:intergenic | 5.0% |
| ACAACTTCAAGCGTTCCACG+AGG | + | chr8_3:18023444-18023463 | None:intergenic | 50.0% | |
| AATTTGTCCGGTCCCGACTT+GGG | + | chr8_3:18024783-18024802 | None:intergenic | 50.0% | |
| AAATTTGTCCGGTCCCGACT+TGG | + | chr8_3:18024784-18024803 | None:intergenic | 50.0% | |
| !! | GGCTCTCACTTTTACACCTG+AGG | - | chr8_3:18025390-18025409 | Msa1280080:intron | 50.0% |
| AAGAAGAGGAGACTGGTGGA+TGG | - | chr8_3:18025524-18025543 | Msa1280080:intron | 50.0% | |
| GTGGATGGAAACAATCGGCT+AGG | - | chr8_3:18025539-18025558 | Msa1280080:intron | 50.0% | |
| GATCCTCACATACAGGGCAC+AGG | - | chr8_3:18024226-18024245 | Msa1280080:intron | 55.0% | |
| GTGCTGGATCCAACCCTCAA+TGG | - | chr8_3:18024877-18024896 | Msa1280080:intron | 55.0% | |
| GCTCCTGTGCCCTGTATGTG+AGG | + | chr8_3:18024232-18024251 | None:intergenic | 60.0% | |
| ACATTGGCCCAAGTCGGGAC+CGG | - | chr8_3:18024773-18024792 | Msa1280080:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 18023276 | 18025806 | 18023276 | ID=Msa1280080;Name=Msa1280080 |
| chr8_3 | mRNA | 18023276 | 18025806 | 18023276 | ID=Msa1280080-mRNA-1;Parent=Msa1280080;Name=Msa1280080-mRNA-1;_AED=0.33;_eAED=0.33;_QI=162|1|1|1|1|1|5|236|148 |
| chr8_3 | exon | 18023276 | 18023583 | 18023276 | ID=Msa1280080-mRNA-1:exon:6898;Parent=Msa1280080-mRNA-1 |
| chr8_3 | exon | 18023671 | 18023785 | 18023671 | ID=Msa1280080-mRNA-1:exon:6897;Parent=Msa1280080-mRNA-1 |
| chr8_3 | exon | 18024079 | 18024205 | 18024079 | ID=Msa1280080-mRNA-1:exon:6896;Parent=Msa1280080-mRNA-1 |
| chr8_3 | exon | 18024810 | 18024875 | 18024810 | ID=Msa1280080-mRNA-1:exon:6895;Parent=Msa1280080-mRNA-1 |
| chr8_3 | exon | 18025578 | 18025806 | 18025578 | ID=Msa1280080-mRNA-1:exon:6894;Parent=Msa1280080-mRNA-1 |
| chr8_3 | five_prime_UTR | 18025645 | 18025806 | 18025645 | ID=Msa1280080-mRNA-1:five_prime_utr;Parent=Msa1280080-mRNA-1 |
| chr8_3 | CDS | 18025578 | 18025644 | 18025578 | ID=Msa1280080-mRNA-1:cds;Parent=Msa1280080-mRNA-1 |
| chr8_3 | CDS | 18024810 | 18024875 | 18024810 | ID=Msa1280080-mRNA-1:cds;Parent=Msa1280080-mRNA-1 |
| chr8_3 | CDS | 18024079 | 18024205 | 18024079 | ID=Msa1280080-mRNA-1:cds;Parent=Msa1280080-mRNA-1 |
| chr8_3 | CDS | 18023671 | 18023785 | 18023671 | ID=Msa1280080-mRNA-1:cds;Parent=Msa1280080-mRNA-1 |
| chr8_3 | CDS | 18023512 | 18023583 | 18023512 | ID=Msa1280080-mRNA-1:cds;Parent=Msa1280080-mRNA-1 |
| chr8_3 | three_prime_UTR | 18023276 | 18023511 | 18023276 | ID=Msa1280080-mRNA-1:three_prime_utr;Parent=Msa1280080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
