AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1184680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1184680 MtrunA17_Chr8g0350021 98.649 148 2 0 1 148 1 148 1.98e-107 302
Msa1184680 MtrunA17_Chr8g0350031 83.108 148 25 0 1 148 1 148 9.15e-93 265
Msa1184680 MtrunA17_Chr5g0435251 40.645 155 77 5 1 144 1 151 3.65e-35 119
Msa1184680 MtrunA17_Chr5g0435261 39.241 158 80 5 1 145 1 155 3.53e-32 112
Msa1184680 MtrunA17_Chr1g0147471 67.742 62 20 0 25 86 1 62 2.92e-28 99.4
Msa1184680 MtrunA17_Chr7g0246521 60.377 53 21 0 25 77 1 53 8.53e-21 80.1
Msa1184680 MtrunA17_Chr8g0348941 28.571 147 93 2 1 135 1 147 1.88e-16 72.4
Msa1184680 MtrunA17_Chr3g0137471 32.031 128 83 2 3 129 465 589 1.01e-13 67.4
Msa1184680 MtrunA17_Chr5g0393481 27.119 118 84 2 6 122 15 131 1.79e-12 62.8
Msa1184680 MtrunA17_Chr4g0064531 33.588 131 81 4 3 131 440 566 2.22e-12 63.5
Msa1184680 MtrunA17_Chr5g0393541 29.412 119 82 2 6 123 11 128 3.68e-12 62.0
Msa1184680 MtrunA17_Chr2g0290631 37.363 91 55 2 4 94 6 94 4.45e-12 60.5
Msa1184680 MtrunA17_Chr2g0292461 37.363 91 55 2 4 94 173 261 2.81e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1184680 AT1G63220.1 57.432 148 62 1 1 148 1 147 9.62e-56 172
Msa1184680 AT1G63220.2 52.027 148 56 2 1 148 1 133 1.37e-45 145
Msa1184680 AT3G55470.2 34.177 158 90 5 1 147 1 155 1.60e-23 90.1
Msa1184680 AT3G55470.1 34.591 159 89 6 1 147 1 156 1.50e-22 87.8
Msa1184680 AT4G00467.2 30.282 142 88 3 1 131 1 142 4.81e-15 68.9
Msa1184680 AT4G00467.1 30.282 142 88 3 1 131 1 142 7.70e-15 68.9
Msa1184680 AT5G47710.1 39.785 93 54 2 2 94 4 94 1.05e-13 65.1
Msa1184680 AT5G47710.2 39.785 93 54 2 2 94 4 94 1.05e-13 65.1
Msa1184680 AT5G47710.3 39.785 93 54 2 2 94 4 94 1.05e-13 65.1
Msa1184680 AT5G47710.4 39.785 93 54 2 2 94 4 94 1.05e-13 65.1
Msa1184680 AT5G04220.1 32.278 158 92 5 2 147 37 191 4.64e-13 65.5
Msa1184680 AT5G04220.3 32.278 158 92 5 2 147 197 351 9.76e-13 64.7
Msa1184680 AT5G04220.2 32.278 158 92 5 2 147 259 413 1.43e-12 64.3
Msa1184680 AT4G34150.1 26.613 124 89 2 6 128 12 134 4.06e-12 62.0

Find 42 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTATGTGATCCTCACTTAT+AGG 0.237814 8_1:-20582341 Msa1184680:CDS
TTTAAATGTTGAGTCTCTTT+AGG 0.238170 8_1:+20583289 None:intergenic
CATCCATGTAATTCTTGATT+TGG 0.294132 8_1:+20581470 None:intergenic
AGTATTAAATTGAGTTTGAT+TGG 0.307174 8_1:+20583250 None:intergenic
AAAGAGACTCAACATTTAAA+AGG 0.310681 8_1:-20583286 Msa1184680:five_prime_UTR
TCTAGATTATTATCTCTAAT+AGG 0.323373 8_1:+20583182 None:intergenic
TACTATATATACGCTGATTC+AGG 0.330370 8_1:-20583231 Msa1184680:five_prime_UTR
TGAGCTCAATCTAAAGATAA+TGG 0.346296 8_1:-20582129 Msa1184680:CDS
ACAAGTTTGTAAGAATTCTC+TGG 0.370783 8_1:+20581738 None:intergenic
AGAGAAAATCATTGTCTTCA+AGG 0.372599 8_1:+20583071 None:intergenic
TTATGTGATCCTCACTTATA+GGG 0.386347 8_1:-20582340 Msa1184680:CDS
AAAATATTGTGGAGAGGTTA+AGG 0.388006 8_1:-20581706 Msa1184680:CDS
TATAGTGCTGATGATAATCT+TGG 0.411031 8_1:-20582095 Msa1184680:CDS
ATAACATAGTTTATGTCAAA+AGG 0.450984 8_1:+20581366 None:intergenic
GAAATGTCTCATTCCATTGA+GGG 0.473516 8_1:+20582177 None:intergenic
CAATCTAAAGATAATGGAAA+AGG 0.492449 8_1:-20582123 Msa1184680:CDS
TCTTGAATCACTGTCTCTAA+AGG 0.495815 8_1:+20581771 None:intergenic
CTGCCAAATCAAGAATTACA+TGG 0.514216 8_1:-20581473 Msa1184680:three_prime_UTR
GTGCTGGATCCAACCCTCAA+TGG 0.516268 8_1:-20582190 Msa1184680:CDS
AGAAATGTCTCATTCCATTG+AGG 0.522164 8_1:+20582176 None:intergenic
TGTCTCATTCCATTGAGGGT+TGG 0.547968 8_1:+20582181 None:intergenic
GTGGATGGAAACAATCGGCT+AGG 0.550623 8_1:-20581529 Msa1184680:CDS
CTATAAGTGAGGATCACATA+AGG 0.556013 8_1:+20582342 None:intergenic
TACAATCAAGAGGAGGAGAC+TGG 0.557679 8_1:-20581551 Msa1184680:CDS
AAGAGGAGGAGACTGGTGGA+TGG 0.563015 8_1:-20581544 Msa1184680:CDS
GACTGGTGGATGGAAACAAT+CGG 0.565129 8_1:-20581534 Msa1184680:CDS
GGGACTATTGAAGTGAATGA+AGG 0.567056 8_1:-20581508 Msa1184680:exon
GATCCTCACTTATAGGGCAC+AGG 0.584755 8_1:-20582334 Msa1184680:CDS
CACAAGAGTACTGTGCAAGA+AGG 0.593988 8_1:-20582309 Msa1184680:intron
GAATTCTTACAAACTTGTGA+AGG 0.595780 8_1:-20581733 Msa1184680:CDS
TGGATGGAAACAATCGGCTA+GGG 0.602214 8_1:-20581528 Msa1184680:CDS
AATCAAGAGGAGGAGACTGG+TGG 0.628097 8_1:-20581548 Msa1184680:CDS
TTTAGAGACAGTGATTCAAG+AGG 0.636421 8_1:-20581769 Msa1184680:CDS
TGAACGGAGTTACAATCAAG+AGG 0.638924 8_1:-20581561 Msa1184680:CDS
TTAGAGACAGTGATTCAAGA+GGG 0.640617 8_1:-20581768 Msa1184680:CDS
TGGGGATCGATGTGATTGTG+AGG 0.641837 8_1:-20581281 None:intergenic
GCTCCTGTGCCCTATAAGTG+AGG 0.645283 8_1:+20582331 None:intergenic
GGTTGCAGAGAAACTATGAA+CGG 0.677708 8_1:-20581577 Msa1184680:intron
AATCAGAGAAAGATGCCTCG+TGG 0.689332 8_1:-20583127 Msa1184680:exon
ATATTGTGGAGAGGTTAAGG+TGG 0.690996 8_1:-20581703 Msa1184680:CDS
ACGGAGTTACAATCAAGAGG+AGG 0.705054 8_1:-20581558 Msa1184680:CDS
ACAACTTCAAGCGTTCCACG+AGG 0.769497 8_1:+20583112 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAGTTATAATTTGTAATAT+TGG - chr8_1:20582753-20582772 Msa1184680:intron 10.0%
!!! AATAATAGTACATTTTAAAA+GGG + chr8_1:20582973-20582992 None:intergenic 10.0%
!!! AAAGTTATAATTTGTAATAT+TGG - chr8_1:20582753-20582772 Msa1184680:intron 10.0%
!!! AATAATAGTACATTTTAAAA+GGG + chr8_1:20582973-20582992 None:intergenic 10.0%
!!! AACAATTTTAATAGTCAAAT+TGG + chr8_1:20582151-20582170 None:intergenic 15.0%
!!! CAATAATAGTACATTTTAAA+AGG + chr8_1:20582974-20582993 None:intergenic 15.0%
!!! CTTTTAAAATGTACTATTAT+TGG - chr8_1:20582972-20582991 Msa1184680:intron 15.0%
!!! AACAATTTTAATAGTCAAAT+TGG + chr8_1:20582151-20582170 None:intergenic 15.0%
!!! CAATAATAGTACATTTTAAA+AGG + chr8_1:20582974-20582993 None:intergenic 15.0%
!!! CTTTTAAAATGTACTATTAT+TGG - chr8_1:20582972-20582991 Msa1184680:intron 15.0%
!! ACATTTAAAAGGAAAAAAGT+TGG - chr8_1:20581295-20581314 Msa1184680:three_prime_UTR 20.0%
!! AGTATTAAATTGAGTTTGAT+TGG + chr8_1:20581323-20581342 None:intergenic 20.0%
!! TCTAGATTATTATCTCTAAT+AGG + chr8_1:20581391-20581410 None:intergenic 20.0%
!! CTGATTTCAAAAATTCTAAA+TGG + chr8_1:20581429-20581448 None:intergenic 20.0%
!!! GAAATTTTTTGATCTTAAGT+TGG - chr8_1:20581616-20581635 Msa1184680:intron 20.0%
!! ATAATATGATAAAACCAAAC+CGG + chr8_1:20581941-20581960 None:intergenic 20.0%
!! ATTGTATCATGAATAATATC+AGG - chr8_1:20582358-20582377 Msa1184680:intron 20.0%
!!! ATTTTAATCTCTGTATTTTC+TGG - chr8_1:20583151-20583170 Msa1184680:five_prime_UTR 20.0%
!! ATAACATAGTTTATGTCAAA+AGG + chr8_1:20583207-20583226 None:intergenic 20.0%
!!! ATAAGCCTTGTTATATTTTT+GGG - chr8_1:20583270-20583289 Msa1184680:five_prime_UTR 20.0%
!! ACATTTAAAAGGAAAAAAGT+TGG - chr8_1:20581295-20581314 Msa1184680:three_prime_UTR 20.0%
!! AGTATTAAATTGAGTTTGAT+TGG + chr8_1:20581323-20581342 None:intergenic 20.0%
!! TCTAGATTATTATCTCTAAT+AGG + chr8_1:20581391-20581410 None:intergenic 20.0%
!! CTGATTTCAAAAATTCTAAA+TGG + chr8_1:20581429-20581448 None:intergenic 20.0%
!!! GAAATTTTTTGATCTTAAGT+TGG - chr8_1:20581616-20581635 Msa1184680:intron 20.0%
!! ATAATATGATAAAACCAAAC+CGG + chr8_1:20581941-20581960 None:intergenic 20.0%
!! ATTGTATCATGAATAATATC+AGG - chr8_1:20582358-20582377 Msa1184680:intron 20.0%
!!! ATTTTAATCTCTGTATTTTC+TGG - chr8_1:20583151-20583170 Msa1184680:five_prime_UTR 20.0%
!! ATAACATAGTTTATGTCAAA+AGG + chr8_1:20583207-20583226 None:intergenic 20.0%
!!! ATAAGCCTTGTTATATTTTT+GGG - chr8_1:20583270-20583289 Msa1184680:five_prime_UTR 20.0%
! AAAGAGACTCAACATTTAAA+AGG - chr8_1:20581284-20581303 Msa1184680:three_prime_UTR 25.0%
! GGAACAACAAATATATAGAT+CGG + chr8_1:20581643-20581662 None:intergenic 25.0%
! TGTGTTGTATGCTATTAAAT+TGG - chr8_1:20581973-20581992 Msa1184680:intron 25.0%
! GTGTTGTATGCTATTAAATT+GGG - chr8_1:20581974-20581993 Msa1184680:intron 25.0%
! AAAAAAGATCAAGACTTTAG+AGG + chr8_1:20582185-20582204 None:intergenic 25.0%
!!! CAATCTAAAGATAATGGAAA+AGG - chr8_1:20582447-20582466 Msa1184680:intron 25.0%
! TTAAACTCAAGATGAATCAA+AGG + chr8_1:20582543-20582562 None:intergenic 25.0%
! TTGATTCATCTTGAGTTTAA+TGG - chr8_1:20582543-20582562 Msa1184680:intron 25.0%
! CATGAGTTCTTATTGAATAT+CGG + chr8_1:20582600-20582619 None:intergenic 25.0%
! ATAACTGAAAAGTTGAATGT+TGG - chr8_1:20582659-20582678 Msa1184680:intron 25.0%
!! ACTAGTTTACACTTAAAAGA+AGG - chr8_1:20582726-20582745 Msa1184680:intron 25.0%
! GAAGAAAAATAACAGAAAAC+AGG + chr8_1:20582928-20582947 None:intergenic 25.0%
!!! GATAAGCCTTGTTATATTTT+TGG - chr8_1:20583269-20583288 Msa1184680:five_prime_UTR 25.0%
!!! TAAGCCTTGTTATATTTTTG+GGG - chr8_1:20583271-20583290 Msa1184680:five_prime_UTR 25.0%
! AAAGAGACTCAACATTTAAA+AGG - chr8_1:20581284-20581303 Msa1184680:three_prime_UTR 25.0%
! GGAACAACAAATATATAGAT+CGG + chr8_1:20581643-20581662 None:intergenic 25.0%
! TGTGTTGTATGCTATTAAAT+TGG - chr8_1:20581973-20581992 Msa1184680:intron 25.0%
! GTGTTGTATGCTATTAAATT+GGG - chr8_1:20581974-20581993 Msa1184680:intron 25.0%
! AAAAAAGATCAAGACTTTAG+AGG + chr8_1:20582185-20582204 None:intergenic 25.0%
!!! CAATCTAAAGATAATGGAAA+AGG - chr8_1:20582447-20582466 Msa1184680:intron 25.0%
! TTAAACTCAAGATGAATCAA+AGG + chr8_1:20582543-20582562 None:intergenic 25.0%
! TTGATTCATCTTGAGTTTAA+TGG - chr8_1:20582543-20582562 Msa1184680:intron 25.0%
! CATGAGTTCTTATTGAATAT+CGG + chr8_1:20582600-20582619 None:intergenic 25.0%
! ATAACTGAAAAGTTGAATGT+TGG - chr8_1:20582659-20582678 Msa1184680:intron 25.0%
!! ACTAGTTTACACTTAAAAGA+AGG - chr8_1:20582726-20582745 Msa1184680:intron 25.0%
! GAAGAAAAATAACAGAAAAC+AGG + chr8_1:20582928-20582947 None:intergenic 25.0%
!!! GATAAGCCTTGTTATATTTT+TGG - chr8_1:20583269-20583288 Msa1184680:five_prime_UTR 25.0%
!!! TAAGCCTTGTTATATTTTTG+GGG - chr8_1:20583271-20583290 Msa1184680:five_prime_UTR 25.0%
!! TACTATATATACGCTGATTC+AGG - chr8_1:20581339-20581358 Msa1184680:three_prime_UTR 30.0%
AGAGAAAATCATTGTCTTCA+AGG + chr8_1:20581502-20581521 None:intergenic 30.0%
GAAATTTCTGCATCAATCAA+TGG - chr8_1:20581554-20581573 Msa1184680:CDS 30.0%
! ATCACAAGATTTCACACTTT+TGG + chr8_1:20581582-20581601 None:intergenic 30.0%
AGACTCAATTAACAAGCTTT+AGG + chr8_1:20581664-20581683 None:intergenic 30.0%
! CTGAATTGATTCACTAAATC+AGG + chr8_1:20581697-20581716 None:intergenic 30.0%
CTGATTTAGTGAATCAATTC+AGG - chr8_1:20581695-20581714 Msa1184680:CDS 30.0%
AAACGAACACTATAACAAGA+CGG + chr8_1:20581830-20581849 None:intergenic 30.0%
AATGTTGACAGCTAAATCAT+TGG + chr8_1:20581895-20581914 None:intergenic 30.0%
CATCGCTAAAAACGAAAAAA+AGG + chr8_1:20582026-20582045 None:intergenic 30.0%
TTATGTGATCCTCACTTATA+GGG - chr8_1:20582230-20582249 Msa1184680:intron 30.0%
CTTGTCATAAGATTCAGAAA+TGG + chr8_1:20582288-20582307 None:intergenic 30.0%
TGAGCTCAATCTAAAGATAA+TGG - chr8_1:20582441-20582460 Msa1184680:intron 30.0%
!! TATAGTGCTGATGATAATCT+TGG - chr8_1:20582475-20582494 Msa1184680:intron 30.0%
GTTTAATGGAGATACATTGT+CGG - chr8_1:20582557-20582576 Msa1184680:intron 30.0%
TTAAATTGCAGCAAGAAAGT+TGG + chr8_1:20582638-20582657 None:intergenic 30.0%
ACAAGTTTGTAAGAATTCTC+TGG + chr8_1:20582835-20582854 None:intergenic 30.0%
GAATTCTTACAAACTTGTGA+AGG - chr8_1:20582837-20582856 Msa1184680:intron 30.0%
GTGAAGGATGAAAAATATTG+TGG - chr8_1:20582853-20582872 Msa1184680:intron 30.0%
AAAATATTGTGGAGAGGTTA+AGG - chr8_1:20582864-20582883 Msa1184680:intron 30.0%
CATCCATGTAATTCTTGATT+TGG + chr8_1:20583103-20583122 None:intergenic 30.0%
!! TACTATATATACGCTGATTC+AGG - chr8_1:20581339-20581358 Msa1184680:three_prime_UTR 30.0%
AGAGAAAATCATTGTCTTCA+AGG + chr8_1:20581502-20581521 None:intergenic 30.0%
GAAATTTCTGCATCAATCAA+TGG - chr8_1:20581554-20581573 Msa1184680:CDS 30.0%
! ATCACAAGATTTCACACTTT+TGG + chr8_1:20581582-20581601 None:intergenic 30.0%
AGACTCAATTAACAAGCTTT+AGG + chr8_1:20581664-20581683 None:intergenic 30.0%
! CTGAATTGATTCACTAAATC+AGG + chr8_1:20581697-20581716 None:intergenic 30.0%
CTGATTTAGTGAATCAATTC+AGG - chr8_1:20581695-20581714 Msa1184680:CDS 30.0%
AAACGAACACTATAACAAGA+CGG + chr8_1:20581830-20581849 None:intergenic 30.0%
AATGTTGACAGCTAAATCAT+TGG + chr8_1:20581895-20581914 None:intergenic 30.0%
CATCGCTAAAAACGAAAAAA+AGG + chr8_1:20582026-20582045 None:intergenic 30.0%
TTATGTGATCCTCACTTATA+GGG - chr8_1:20582230-20582249 Msa1184680:intron 30.0%
CTTGTCATAAGATTCAGAAA+TGG + chr8_1:20582288-20582307 None:intergenic 30.0%
TGAGCTCAATCTAAAGATAA+TGG - chr8_1:20582441-20582460 Msa1184680:intron 30.0%
!! TATAGTGCTGATGATAATCT+TGG - chr8_1:20582475-20582494 Msa1184680:intron 30.0%
GTTTAATGGAGATACATTGT+CGG - chr8_1:20582557-20582576 Msa1184680:intron 30.0%
TTAAATTGCAGCAAGAAAGT+TGG + chr8_1:20582638-20582657 None:intergenic 30.0%
ACAAGTTTGTAAGAATTCTC+TGG + chr8_1:20582835-20582854 None:intergenic 30.0%
GAATTCTTACAAACTTGTGA+AGG - chr8_1:20582837-20582856 Msa1184680:intron 30.0%
GTGAAGGATGAAAAATATTG+TGG - chr8_1:20582853-20582872 Msa1184680:intron 30.0%
AAAATATTGTGGAGAGGTTA+AGG - chr8_1:20582864-20582883 Msa1184680:intron 30.0%
CATCCATGTAATTCTTGATT+TGG + chr8_1:20583103-20583122 None:intergenic 30.0%
!!! GCTGATTCAGGCATTTTTTT+TGG - chr8_1:20581351-20581370 Msa1184680:three_prime_UTR 35.0%
!!! GTTGTTTTGATCAGTGCTAA+AGG - chr8_1:20581476-20581495 Msa1184680:three_prime_UTR 35.0%
GAGTACATTGAATACAGTCT+CGG + chr8_1:20582055-20582074 None:intergenic 35.0%
CTATAAGTGAGGATCACATA+AGG + chr8_1:20582231-20582250 None:intergenic 35.0%
CTTATGTGATCCTCACTTAT+AGG - chr8_1:20582229-20582248 Msa1184680:intron 35.0%
TCATGAATAATATCAGGTGC+TGG - chr8_1:20582364-20582383 Msa1184680:intron 35.0%
GAAATGTCTCATTCCATTGA+GGG + chr8_1:20582396-20582415 None:intergenic 35.0%
AGAAATGTCTCATTCCATTG+AGG + chr8_1:20582397-20582416 None:intergenic 35.0%
TAAGAACTCATGATATTGCG+AGG - chr8_1:20582608-20582627 Msa1184680:intron 35.0%
TCTTGAATCACTGTCTCTAA+AGG + chr8_1:20582802-20582821 None:intergenic 35.0%
TTTAGAGACAGTGATTCAAG+AGG - chr8_1:20582801-20582820 Msa1184680:intron 35.0%
TTAGAGACAGTGATTCAAGA+GGG - chr8_1:20582802-20582821 Msa1184680:intron 35.0%
GGATGAAAAATATTGTGGAG+AGG - chr8_1:20582858-20582877 Msa1184680:intron 35.0%
! CTTTTACACCTGAGGTAATA+AGG - chr8_1:20582896-20582915 Msa1184680:intron 35.0%
CTGCCAAATCAAGAATTACA+TGG - chr8_1:20583097-20583116 Msa1184680:CDS 35.0%
CGATCCCCAAAAATATAACA+AGG + chr8_1:20583278-20583297 None:intergenic 35.0%
!!! GCTGATTCAGGCATTTTTTT+TGG - chr8_1:20581351-20581370 Msa1184680:three_prime_UTR 35.0%
!!! GTTGTTTTGATCAGTGCTAA+AGG - chr8_1:20581476-20581495 Msa1184680:three_prime_UTR 35.0%
GAGTACATTGAATACAGTCT+CGG + chr8_1:20582055-20582074 None:intergenic 35.0%
CTATAAGTGAGGATCACATA+AGG + chr8_1:20582231-20582250 None:intergenic 35.0%
CTTATGTGATCCTCACTTAT+AGG - chr8_1:20582229-20582248 Msa1184680:intron 35.0%
TCATGAATAATATCAGGTGC+TGG - chr8_1:20582364-20582383 Msa1184680:intron 35.0%
GAAATGTCTCATTCCATTGA+GGG + chr8_1:20582396-20582415 None:intergenic 35.0%
AGAAATGTCTCATTCCATTG+AGG + chr8_1:20582397-20582416 None:intergenic 35.0%
TAAGAACTCATGATATTGCG+AGG - chr8_1:20582608-20582627 Msa1184680:intron 35.0%
TCTTGAATCACTGTCTCTAA+AGG + chr8_1:20582802-20582821 None:intergenic 35.0%
TTTAGAGACAGTGATTCAAG+AGG - chr8_1:20582801-20582820 Msa1184680:intron 35.0%
TTAGAGACAGTGATTCAAGA+GGG - chr8_1:20582802-20582821 Msa1184680:intron 35.0%
GGATGAAAAATATTGTGGAG+AGG - chr8_1:20582858-20582877 Msa1184680:intron 35.0%
! CTTTTACACCTGAGGTAATA+AGG - chr8_1:20582896-20582915 Msa1184680:intron 35.0%
CTGCCAAATCAAGAATTACA+TGG - chr8_1:20583097-20583116 Msa1184680:CDS 35.0%
CGATCCCCAAAAATATAACA+AGG + chr8_1:20583278-20583297 None:intergenic 35.0%
TAATAGCCCAATTCACGAGT+CGG - chr8_1:20581764-20581783 Msa1184680:CDS 40.0%
TGTCAACATTGCATAACCCT+AGG - chr8_1:20581905-20581924 Msa1184680:intron 40.0%
ATATTGTGGAGAGGTTAAGG+TGG - chr8_1:20582867-20582886 Msa1184680:intron 40.0%
GGTTTCATCCTTATTACCTC+AGG + chr8_1:20582907-20582926 None:intergenic 40.0%
GGTTGCAGAGAAACTATGAA+CGG - chr8_1:20582993-20583012 Msa1184680:intron 40.0%
TGAACGGAGTTACAATCAAG+AGG - chr8_1:20583009-20583028 Msa1184680:intron 40.0%
GGGACTATTGAAGTGAATGA+AGG - chr8_1:20583062-20583081 Msa1184680:intron 40.0%
TAATAGCCCAATTCACGAGT+CGG - chr8_1:20581764-20581783 Msa1184680:CDS 40.0%
TGTCAACATTGCATAACCCT+AGG - chr8_1:20581905-20581924 Msa1184680:intron 40.0%
ATATTGTGGAGAGGTTAAGG+TGG - chr8_1:20582867-20582886 Msa1184680:intron 40.0%
GGTTTCATCCTTATTACCTC+AGG + chr8_1:20582907-20582926 None:intergenic 40.0%
GGTTGCAGAGAAACTATGAA+CGG - chr8_1:20582993-20583012 Msa1184680:intron 40.0%
TGAACGGAGTTACAATCAAG+AGG - chr8_1:20583009-20583028 Msa1184680:intron 40.0%
GGGACTATTGAAGTGAATGA+AGG - chr8_1:20583062-20583081 Msa1184680:intron 40.0%
AATCAGAGAAAGATGCCTCG+TGG - chr8_1:20581443-20581462 Msa1184680:three_prime_UTR 45.0%
!! ATAAGGCCGACTCGTGAATT+GGG + chr8_1:20581773-20581792 None:intergenic 45.0%
!! AATAAGGCCGACTCGTGAAT+TGG + chr8_1:20581774-20581793 None:intergenic 45.0%
CACCACGACGATCAACAATA+AGG + chr8_1:20581790-20581809 None:intergenic 45.0%
AACCCTAGGCATGAGTATTC+CGG - chr8_1:20581919-20581938 Msa1184680:intron 45.0%
AACCGGAATACTCATGCCTA+GGG + chr8_1:20581924-20581943 None:intergenic 45.0%
AAACCGGAATACTCATGCCT+AGG + chr8_1:20581925-20581944 None:intergenic 45.0%
TAGGCATGAGTATTCCGGTT+TGG - chr8_1:20581924-20581943 Msa1184680:intron 45.0%
!! CACAAGAGTACTGTGCAAGA+AGG - chr8_1:20582261-20582280 Msa1184680:intron 45.0%
TGTCTCATTCCATTGAGGGT+TGG + chr8_1:20582392-20582411 None:intergenic 45.0%
ACGGAGTTACAATCAAGAGG+AGG - chr8_1:20583012-20583031 Msa1184680:intron 45.0%
TACAATCAAGAGGAGGAGAC+TGG - chr8_1:20583019-20583038 Msa1184680:intron 45.0%
! GACTGGTGGATGGAAACAAT+CGG - chr8_1:20583036-20583055 Msa1184680:intron 45.0%
TGGATGGAAACAATCGGCTA+GGG - chr8_1:20583042-20583061 Msa1184680:intron 45.0%
AATCAGAGAAAGATGCCTCG+TGG - chr8_1:20581443-20581462 Msa1184680:three_prime_UTR 45.0%
!! ATAAGGCCGACTCGTGAATT+GGG + chr8_1:20581773-20581792 None:intergenic 45.0%
!! AATAAGGCCGACTCGTGAAT+TGG + chr8_1:20581774-20581793 None:intergenic 45.0%
CACCACGACGATCAACAATA+AGG + chr8_1:20581790-20581809 None:intergenic 45.0%
AACCCTAGGCATGAGTATTC+CGG - chr8_1:20581919-20581938 Msa1184680:intron 45.0%
AACCGGAATACTCATGCCTA+GGG + chr8_1:20581924-20581943 None:intergenic 45.0%
AAACCGGAATACTCATGCCT+AGG + chr8_1:20581925-20581944 None:intergenic 45.0%
TAGGCATGAGTATTCCGGTT+TGG - chr8_1:20581924-20581943 Msa1184680:intron 45.0%
!! CACAAGAGTACTGTGCAAGA+AGG - chr8_1:20582261-20582280 Msa1184680:intron 45.0%
TGTCTCATTCCATTGAGGGT+TGG + chr8_1:20582392-20582411 None:intergenic 45.0%
ACGGAGTTACAATCAAGAGG+AGG - chr8_1:20583012-20583031 Msa1184680:intron 45.0%
TACAATCAAGAGGAGGAGAC+TGG - chr8_1:20583019-20583038 Msa1184680:intron 45.0%
! GACTGGTGGATGGAAACAAT+CGG - chr8_1:20583036-20583055 Msa1184680:intron 45.0%
TGGATGGAAACAATCGGCTA+GGG - chr8_1:20583042-20583061 Msa1184680:intron 45.0%
!!! TTTTTTTTTTTTGAAAAAAA+GGG + chr8_1:20582100-20582119 None:intergenic 5.0%
!!! TTTTTTTTTTTTTGAAAAAA+AGG + chr8_1:20582101-20582120 None:intergenic 5.0%
!!! TTTTTTTTTTTTGAAAAAAA+GGG + chr8_1:20582100-20582119 None:intergenic 5.0%
!!! TTTTTTTTTTTTTGAAAAAA+AGG + chr8_1:20582101-20582120 None:intergenic 5.0%
ACAACTTCAAGCGTTCCACG+AGG + chr8_1:20581461-20581480 None:intergenic 50.0%
!! GGCCTTATTGTTGATCGTCG+TGG - chr8_1:20581785-20581804 Msa1184680:intron 50.0%
GATCCTCACTTATAGGGCAC+AGG - chr8_1:20582236-20582255 Msa1184680:intron 50.0%
!! GGCTCTCACTTTTACACCTG+AGG - chr8_1:20582888-20582907 Msa1184680:intron 50.0%
AATCAAGAGGAGGAGACTGG+TGG - chr8_1:20583022-20583041 Msa1184680:intron 50.0%
GTGGATGGAAACAATCGGCT+AGG - chr8_1:20583041-20583060 Msa1184680:intron 50.0%
ACAACTTCAAGCGTTCCACG+AGG + chr8_1:20581461-20581480 None:intergenic 50.0%
!! GGCCTTATTGTTGATCGTCG+TGG - chr8_1:20581785-20581804 Msa1184680:intron 50.0%
GATCCTCACTTATAGGGCAC+AGG - chr8_1:20582236-20582255 Msa1184680:intron 50.0%
!! GGCTCTCACTTTTACACCTG+AGG - chr8_1:20582888-20582907 Msa1184680:intron 50.0%
AATCAAGAGGAGGAGACTGG+TGG - chr8_1:20583022-20583041 Msa1184680:intron 50.0%
GTGGATGGAAACAATCGGCT+AGG - chr8_1:20583041-20583060 Msa1184680:intron 50.0%
GCTCCTGTGCCCTATAAGTG+AGG + chr8_1:20582242-20582261 None:intergenic 55.0%
GTGCTGGATCCAACCCTCAA+TGG - chr8_1:20582380-20582399 Msa1184680:intron 55.0%
AAGAGGAGGAGACTGGTGGA+TGG - chr8_1:20583026-20583045 Msa1184680:intron 55.0%
GCTCCTGTGCCCTATAAGTG+AGG + chr8_1:20582242-20582261 None:intergenic 55.0%
GTGCTGGATCCAACCCTCAA+TGG - chr8_1:20582380-20582399 Msa1184680:intron 55.0%
AAGAGGAGGAGACTGGTGGA+TGG - chr8_1:20583026-20583045 Msa1184680:intron 55.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 20581284 20583308 20581284 ID=Msa1184680;Name=Msa1184680
chr8_1 mRNA 20581284 20583308 20581284 ID=Msa1184680-mRNA-1;Parent=Msa1184680;Name=Msa1184680-mRNA-1;_AED=0.27;_eAED=0.27;_QI=171|1|1|1|1|1|5|236|148
chr8_1 exon 20581284 20581591 20581284 ID=Msa1184680-mRNA-1:exon:7915;Parent=Msa1184680-mRNA-1
chr8_1 exon 20581683 20581797 20581683 ID=Msa1184680-mRNA-1:exon:7914;Parent=Msa1184680-mRNA-1
chr8_1 exon 20582086 20582212 20582086 ID=Msa1184680-mRNA-1:exon:7913;Parent=Msa1184680-mRNA-1
chr8_1 exon 20582310 20582375 20582310 ID=Msa1184680-mRNA-1:exon:7912;Parent=Msa1184680-mRNA-1
chr8_1 exon 20583071 20583308 20583071 ID=Msa1184680-mRNA-1:exon:7911;Parent=Msa1184680-mRNA-1
chr8_1 five_prime_UTR 20583138 20583308 20583138 ID=Msa1184680-mRNA-1:five_prime_utr;Parent=Msa1184680-mRNA-1
chr8_1 CDS 20583071 20583137 20583071 ID=Msa1184680-mRNA-1:cds;Parent=Msa1184680-mRNA-1
chr8_1 CDS 20582310 20582375 20582310 ID=Msa1184680-mRNA-1:cds;Parent=Msa1184680-mRNA-1
chr8_1 CDS 20582086 20582212 20582086 ID=Msa1184680-mRNA-1:cds;Parent=Msa1184680-mRNA-1
chr8_1 CDS 20581683 20581797 20581683 ID=Msa1184680-mRNA-1:cds;Parent=Msa1184680-mRNA-1
chr8_1 CDS 20581520 20581591 20581520 ID=Msa1184680-mRNA-1:cds;Parent=Msa1184680-mRNA-1
chr8_1 three_prime_UTR 20581284 20581519 20581284 ID=Msa1184680-mRNA-1:three_prime_utr;Parent=Msa1184680-mRNA-1
Gene Sequence

>Msa1184680

ATGCCTCGTGGAACGCTTGAAGTTGTTTTGATCAGTGCTAAAGGCCTTGAAGACAATGATTTTCTCTCTAGCATAGATCCTTATGTGATCCTCACTTATAGGGCACAGGAGCACAAGAGTACTGTGCAAGAAGGTGCTGGATCCAACCCTCAATGGAATGAGACATTTCTTTTCACTGTTTCTGACACTGCTTCTGAGCTCAATCTAAAGATAATGGAAAAGGACAACTATAGTGCTGATGATAATCTTGGAGAAGTAATAATTCCTTTAGAGACAGTGATTCAAGAGGGTAGCGTTCCAGAGAATTCTTACAAACTTGTGAAGGATGAAAAATATTGTGGAGAGGTTAAGGTGGCTCTCACTTTTACACCTGAGAGAAACTATGAACGGAGTTACAATCAAGAGGAGGAGACTGGTGGATGGAAACAATCGGCTAGGGACTATTGA

Protein sequence

>Msa1184680

MPRGTLEVVLISAKGLEDNDFLSSIDPYVILTYRAQEHKSTVQEGAGSNPQWNETFLFTVSDTASELNLKIMEKDNYSADDNLGEVIIPLETVIQEGSVPENSYKLVKDEKYCGEVKVALTFTPERNYERSYNQEEETGGWKQSARDY*