AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0358470


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0358470 MtrunA17_Chr3g0097931 97.257 401 8 1 1 398 1 401 0.0 790
Msa0358470 MtrunA17_Chr2g0288011 76.408 373 75 3 31 398 31 395 0.0 559
Msa0358470 MtrunA17_Chr4g0074541 77.929 367 66 3 37 398 36 392 0.0 538
Msa0358470 MtrunA17_Chr2g0291851 51.923 312 144 5 87 395 84 392 8.42e-98 297
Msa0358470 MtrunA17_Chr4g0046561 44.781 297 155 4 105 397 97 388 1.58e-80 253
Msa0358470 MtrunA17_Chr5g0419001 39.820 334 185 5 75 397 65 393 1.22e-78 248
Msa0358470 MtrunA17_Chr4g0058971 41.946 298 170 2 103 398 81 377 1.00e-72 232
Msa0358470 MtrunA17_Chr6g0449891 43.871 310 169 4 93 398 100 408 1.45e-70 228
Msa0358470 MtrunA17_Chr3g0117501 41.049 324 186 4 78 398 81 402 5.48e-68 221
Msa0358470 MtrunA17_Chr1g0160071 26.230 305 186 7 114 398 21 306 2.16e-23 100
Msa0358470 MtrunA17_Chr3g0114581 25.902 305 187 7 114 398 22 307 1.07e-22 98.2
Msa0358470 MtrunA17_Chr3g0112981 23.344 317 228 10 91 398 9 319 2.65e-18 85.1
Msa0358470 MtrunA17_Chr5g0436341 23.453 307 221 9 100 398 3 303 7.09e-16 77.8
Msa0358470 MtrunA17_Chr4g0008071 21.622 296 215 6 113 398 19 307 9.06e-15 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0358470 AT5G54800.1 73.350 409 75 4 1 397 1 387 0.0 570
Msa0358470 AT1G61800.1 80.447 358 51 3 44 398 47 388 0.0 569
Msa0358470 AT1G61800.2 79.609 358 54 3 44 398 47 388 0.0 563
Msa0358470 AT5G17630.1 49.292 353 169 5 52 396 52 402 1.19e-111 333
Msa0358470 AT4G03950.1 56.419 296 66 7 107 398 18 254 4.18e-93 281
Msa0358470 AT5G46110.1 42.121 330 179 6 75 397 73 397 6.33e-80 252
Msa0358470 AT5G46110.4 42.121 330 179 6 75 397 73 397 7.78e-80 252
Msa0358470 AT5G46110.2 44.444 288 151 4 114 397 2 284 2.43e-78 244
Msa0358470 AT5G46110.3 40.909 330 172 7 75 397 73 386 3.47e-75 239
Msa0358470 AT3G01550.1 40.705 312 181 3 91 398 62 373 5.21e-68 220
Msa0358470 AT3G01550.2 39.744 312 179 4 91 398 62 368 7.09e-64 209
Msa0358470 AT5G33320.1 40.000 320 186 5 81 397 83 399 1.06e-62 207
Msa0358470 AT1G77610.1 26.821 302 188 6 114 398 16 301 1.93e-23 100
Msa0358470 AT1G21870.1 25.424 295 201 6 114 398 22 307 5.73e-23 99.4
Msa0358470 AT5G05820.1 24.407 295 210 9 112 398 16 305 4.23e-18 84.7
Msa0358470 AT3G11320.1 24.407 295 210 9 112 398 16 305 3.04e-17 82.4
Msa0358470 AT1G12500.1 25.503 298 203 10 112 398 64 353 5.14e-16 79.3

Find 134 sgRNAs with CRISPR-Local

Find 375 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAACTTACAAGGTTATTT+TGG 0.142421 3_1:-43405527 Msa0358470:three_prime_UTR
AAATGATTGGTTGTTGTTTA+AGG 0.157403 3_1:-43404102 Msa0358470:three_prime_UTR
CTAAGACTGATCTTGAATTT+TGG 0.179678 3_1:-43409137 Msa0358470:CDS
CCGCAACATCTTCTCGAAAA+AGG 0.198188 3_1:-43407795 Msa0358470:CDS
CAAAACATTGTTTACTATAA+AGG 0.218132 3_1:-43405299 Msa0358470:three_prime_UTR
TGTGTTGGTGTTGGAAATTT+TGG 0.226645 3_1:-43409456 Msa0358470:CDS
ACTGGTTCTGATGCTGGTTT+AGG 0.229388 3_1:-43409585 Msa0358470:CDS
TAAATTTCCCTTTGATTGTT+TGG 0.232874 3_1:+43404204 None:intergenic
CTCTTATGATGTTGATCTCT+TGG 0.233486 3_1:-43409182 Msa0358470:CDS
GCTGCAAAGAAATTGAAAAT+TGG 0.248835 3_1:-43409321 Msa0358470:CDS
AAAACAGCTCTCGCTGAAAT+TGG 0.253490 3_1:-43407650 Msa0358470:CDS
TAAAGCTAAATTTGTCTGTT+TGG 0.293412 3_1:-43404511 Msa0358470:three_prime_UTR
TTCTCTTCAGTGTGATTGTT+TGG 0.305180 3_1:-43404909 Msa0358470:three_prime_UTR
ATAGACATTAGAATGAAAAT+TGG 0.311404 3_1:-43404702 Msa0358470:three_prime_UTR
TCTGGTTTCGAGATTTATCT+TGG 0.313532 3_1:-43408266 Msa0358470:CDS
CAAAATTCAAGATCAGTCTT+AGG 0.324094 3_1:+43409138 None:intergenic
CTGTCTTTAGTTCCAATCAT+TGG 0.330191 3_1:-43408217 Msa0358470:CDS
AAATTGGACCTCAATTCTTA+TGG 0.330887 3_1:-43407634 Msa0358470:intron
ATGTGAAAGAATGTGTCTTT+AGG 0.334975 3_1:+43409791 None:intergenic
TGCTATTGTTTCGCAGTGTT+TGG 0.335807 3_1:-43409863 Msa0358470:five_prime_UTR
AGACTCCTTGCCACTACTTC+AGG 0.340374 3_1:+43404624 None:intergenic
GGAGCCGCAATTGCTGTCTT+CGG 0.341789 3_1:-43406681 Msa0358470:CDS
TATGACAGATATACGTTTCA+TGG 0.344750 3_1:+43406755 None:intergenic
GTTTCCAATGCTAAATGTTA+AGG 0.346594 3_1:+43406779 None:intergenic
GAGCCGCAATTGCTGTCTTC+GGG 0.355259 3_1:-43406680 Msa0358470:CDS
GTCATCACTGGTTCTGATGC+TGG 0.358199 3_1:-43409591 Msa0358470:CDS
AAAACATTTATCAAAGAAAC+TGG 0.363908 3_1:+43404930 None:intergenic
CAAAGTTCACATGGAAACTT+AGG 0.369914 3_1:+43405080 None:intergenic
CTGGTTCTGATGCTGGTTTA+GGG 0.374659 3_1:-43409584 Msa0358470:CDS
AAATTAGATAAAACTGTAAA+AGG 0.374951 3_1:-43404425 Msa0358470:three_prime_UTR
GTCTGTAGTCTAATGATTAG+AGG 0.375614 3_1:-43404254 Msa0358470:three_prime_UTR
AGAGCATTGACGGGCTGAAT+TGG 0.376700 3_1:+43406705 None:intergenic
GAGCTCAATTTCAATATGAT+TGG 0.383141 3_1:-43408169 Msa0358470:intron
TATCCAGCAGCCCACATTGC+TGG 0.395472 3_1:+43407674 None:intergenic
GTTGCTGTTGCACACACAAT+TGG 0.398110 3_1:-43408373 Msa0358470:CDS
CTGCAAAGAAATTGAAAATT+GGG 0.402018 3_1:-43409320 Msa0358470:CDS
TCTTATGATGTTGATCTCTT+GGG 0.408536 3_1:-43409181 Msa0358470:CDS
TATTCTCAGCCTCTATAAAC+AGG 0.409257 3_1:+43405331 None:intergenic
AAACAATAGAATTTGCTAAC+AGG 0.409392 3_1:-43405589 Msa0358470:exon
CTGTCATTCTCAAACTTACA+AGG 0.413353 3_1:-43405536 Msa0358470:three_prime_UTR
TGAGCTTTGTATGTTATGTT+TGG 0.413684 3_1:-43405167 Msa0358470:three_prime_UTR
AAAATGATTGTGGTTGAACT+AGG 0.419003 3_1:+43409547 None:intergenic
ATAAATGTTCCTGTTTATAG+AGG 0.426620 3_1:-43405340 Msa0358470:three_prime_UTR
TTTAATTACCATAAGAATTG+AGG 0.427313 3_1:+43407626 None:intergenic
TTTCCAATGCTAAATGTTAA+GGG 0.432602 3_1:+43406780 None:intergenic
TTAGACTACAGACTATTCTA+TGG 0.436771 3_1:+43404264 None:intergenic
ATTCAGCCCGTCAATGCTCT+TGG 0.442993 3_1:-43406702 Msa0358470:CDS
AATTTCTTTGCAGCCTCTGA+AGG 0.446146 3_1:+43409330 None:intergenic
TGCGGCTCCAAGAGCATTGA+CGG 0.448915 3_1:+43406695 None:intergenic
AAATTAATAAATAATTAAGA+AGG 0.449472 3_1:+43409901 None:intergenic
TCTTTAGTTCCAATCATTGG+TGG 0.450678 3_1:-43408214 Msa0358470:CDS
GGACCAGCAATGTGGGCTGC+TGG 0.453634 3_1:-43407677 Msa0358470:CDS
TTATGATAATGTTTCTCAGC+AGG 0.455058 3_1:+43405420 None:intergenic
TTTGTAAGACTAGGATGATC+CGG 0.455275 3_1:-43405485 Msa0358470:three_prime_UTR
TTGTCTCAATGATGAAATCA+TGG 0.456738 3_1:+43409623 None:intergenic
TGTAAACGATACAGCAACTT+TGG 0.463223 3_1:+43408324 None:intergenic
ATTCTATCATCTATACAATC+AGG 0.464239 3_1:-43406832 Msa0358470:CDS
AGTGCACATCCACCAATGAT+TGG 0.466284 3_1:+43408205 None:intergenic
CTGGTTTCGAGATTTATCTT+GGG 0.470237 3_1:-43408265 Msa0358470:CDS
ATGCATTTATCAACAAGAAA+AGG 0.477168 3_1:+43405012 None:intergenic
TTTAATTTCTGCAATGCCAA+TGG 0.477981 3_1:-43405369 Msa0358470:three_prime_UTR
GTTGATGTAAGCCAAGGGTA+AGG 0.477983 3_1:+43409225 None:intergenic
AATTGGACATGTCGCGGCTA+CGG 0.479497 3_1:-43408356 Msa0358470:CDS
GATCTCAACCCTGACACAAA+AGG 0.481754 3_1:-43409757 Msa0358470:five_prime_UTR
TGAATGCTTACCCTTACCCT+TGG 0.485194 3_1:-43409236 Msa0358470:CDS
CACTACTTCAGGTGTGTACA+AGG 0.494787 3_1:+43404635 None:intergenic
GAACATTTATTTCAATCCAT+TGG 0.495728 3_1:+43405353 None:intergenic
ATGAAGGGAAAGTCTGTTAG+TGG 0.498113 3_1:-43407770 Msa0358470:CDS
GTTTCTTTGTTTGCTGACAT+TGG 0.498564 3_1:-43405217 Msa0358470:three_prime_UTR
GTTTAATATTTATAACAAGA+AGG 0.502820 3_1:-43409262 Msa0358470:CDS
ACTGTATACCAAACAATCAA+AGG 0.502957 3_1:-43404212 Msa0358470:three_prime_UTR
CGGGACCTTCTTATACTCTC+AGG 0.506019 3_1:-43406661 Msa0358470:intron
ATCTCAACCCTGACACAAAA+GGG 0.508644 3_1:-43409756 Msa0358470:five_prime_UTR
TCACATGGAAACTTAGGGTC+AGG 0.509767 3_1:+43405086 None:intergenic
GAAGTAGTGGCAAGGAGTCT+AGG 0.511281 3_1:-43404621 Msa0358470:three_prime_UTR
TCTCCCTTAACATTTAGCAT+TGG 0.512173 3_1:-43406783 Msa0358470:CDS
AAAGACAGATAGACTGGCAC+AGG 0.513511 3_1:+43408232 None:intergenic
TTCCATGGAAAACAAGACAT+TGG 0.514648 3_1:+43404772 None:intergenic
CATATTGCATGTGTTGGTGT+TGG 0.517284 3_1:-43409465 Msa0358470:CDS
TGTTGATCTCTTGGGCCACT+AGG 0.518207 3_1:-43409173 Msa0358470:CDS
AAACTCAATACAAATTTCCA+TGG 0.518658 3_1:+43404757 None:intergenic
AGATCAGAGGTTGAAGGTGC+AGG 0.526802 3_1:-43409357 Msa0358470:CDS
TTATAGTCAAGAAAGTATAG+AGG 0.527554 3_1:+43409943 None:intergenic
CTGTATACCAAACAATCAAA+GGG 0.527736 3_1:-43404211 Msa0358470:three_prime_UTR
AATTAATAAATAATTAAGAA+GGG 0.533090 3_1:+43409902 None:intergenic
TGACGGGCTGAATTGGTGTA+TGG 0.536988 3_1:+43406712 None:intergenic
TTGCTAACAGGAAATCTTCG+AGG 0.540119 3_1:-43405577 Msa0358470:three_prime_UTR
ATTAGAATGAAAATTGGAGT+TGG 0.541056 3_1:-43404696 Msa0358470:three_prime_UTR
CCCTTTGCAATTGCTGTCGA+AGG 0.541805 3_1:-43407698 Msa0358470:CDS
CTTGTACACACCTGAAGTAG+TGG 0.553343 3_1:-43404634 Msa0358470:three_prime_UTR
TGCTAACAGGAAATCTTCGA+GGG 0.555074 3_1:-43405576 Msa0358470:three_prime_UTR
CAACCTGGTATTGTCATCAC+TGG 0.556416 3_1:-43409603 Msa0358470:CDS
CCTTCGACAGCAATTGCAAA+GGG 0.556720 3_1:+43407698 None:intergenic
TCAGGTGTCTTACATGTCGT+TGG 0.558309 3_1:-43406814 Msa0358470:CDS
AAATGATTGTGGTTGAACTA+GGG 0.559575 3_1:+43409548 None:intergenic
GGAACTAAAGACAGATAGAC+TGG 0.559770 3_1:+43408226 None:intergenic
TATCTACATGCACTAAAAGC+CGG 0.559847 3_1:+43405466 None:intergenic
TGAAGGCACATACAAATGAA+AGG 0.561521 3_1:+43405109 None:intergenic
GAGAGAGTTGATGTAAGCCA+AGG 0.562039 3_1:+43409219 None:intergenic
GAAGGCACATACAAATGAAA+GGG 0.565795 3_1:+43405110 None:intergenic
CCTCTTCATATTGCATGTGT+TGG 0.574445 3_1:-43409471 Msa0358470:CDS
TTCACAAGACAAAGTTCACA+TGG 0.576183 3_1:+43405071 None:intergenic
ATGCCCTCTGAGATCTTGAA+AGG 0.576832 3_1:+43409822 None:intergenic
TCAACTCTCTCACTTGCTTG+TGG 0.577730 3_1:-43409207 Msa0358470:CDS
CCAACACATGCAATATGAAG+AGG 0.584768 3_1:+43409471 None:intergenic
CAGATAGACTGGCACAGGGA+AGG 0.585869 3_1:+43408237 None:intergenic
AAAGTTCACATGGAAACTTA+GGG 0.589595 3_1:+43405081 None:intergenic
CCCTCTGAGATCTTGAAAGG+TGG 0.590325 3_1:+43409825 None:intergenic
GGTCCCGAAGACAGCAATTG+CGG 0.591919 3_1:+43406677 None:intergenic
ATTTCATCATTGAGACAACC+TGG 0.594337 3_1:-43409618 Msa0358470:CDS
AAGTACCTGAGAGTATAAGA+AGG 0.598923 3_1:+43406656 None:intergenic
CAAAGGGTGTGAGAATTGCA+AGG 0.600027 3_1:+43407714 None:intergenic
GCTGATAGATCAGAGGTTGA+AGG 0.600157 3_1:-43409363 Msa0358470:CDS
AGGTGCAGGAACACCTTCAG+AGG 0.600972 3_1:-43409343 Msa0358470:CDS
TCCTTCGACAGCAATTGCAA+AGG 0.601626 3_1:+43407697 None:intergenic
GCGGCTCCAAGAGCATTGAC+GGG 0.602591 3_1:+43406696 None:intergenic
GAAACCAGAACACTAAAAGC+AGG 0.604333 3_1:+43408280 None:intergenic
TTGATGTAAGCCAAGGGTAA+GGG 0.604430 3_1:+43409226 None:intergenic
CCACCTTTCAAGATCTCAGA+GGG 0.616758 3_1:-43409825 Msa0358470:five_prime_UTR
AGAGAGTTGATGTAAGCCAA+GGG 0.622530 3_1:+43409220 None:intergenic
TTTACACATATCATCAAGAG+TGG 0.634575 3_1:-43408307 Msa0358470:CDS
GAACCAGTGATGACAATACC+AGG 0.644105 3_1:+43409600 None:intergenic
CTGTCGAAGGACCAGCAATG+TGG 0.644464 3_1:-43407685 Msa0358470:CDS
GAAATTTAGAGATAATAAGT+CGG 0.652322 3_1:-43404189 Msa0358470:three_prime_UTR
GGAAACTTAGGGTCAGGTGA+AGG 0.653580 3_1:+43405092 None:intergenic
TGTCGAAGGACCAGCAATGT+GGG 0.656889 3_1:-43407684 Msa0358470:CDS
ACACACAATTGGACATGTCG+CGG 0.658566 3_1:-43408362 Msa0358470:CDS
TTATGAAGCTGATAGATCAG+AGG 0.659768 3_1:-43409370 Msa0358470:CDS
AAAGGGTGTGAGAATTGCAA+GGG 0.680969 3_1:+43407715 None:intergenic
ACACACCTGAAGTAGTGGCA+AGG 0.685885 3_1:-43404629 Msa0358470:three_prime_UTR
AGGAGCTTCAGCAATCCTAG+TGG 0.698645 3_1:+43409158 None:intergenic
ACCACCTTTCAAGATCTCAG+AGG 0.718713 3_1:-43409826 Msa0358470:five_prime_UTR
ATGTTATGTTTGGAAGACAG+AGG 0.719995 3_1:-43405157 Msa0358470:three_prime_UTR
AAGACAGATAGACTGGCACA+GGG 0.744929 3_1:+43408233 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTACAAATAACATTTTTAAT+TGG - chr3_1:43408357-43408376 Msa0358470:CDS 10.0%
!! AAATTAAAGCTAAAAATAAA+AGG - chr3_1:43409466-43409485 Msa0358470:CDS 10.0%
!! GTTTAATATTTATAACAAGA+AGG - chr3_1:43404746-43404765 Msa0358470:three_prime_UTR 15.0%
!!! TTTTTTTCTTTAGAGAAAAA+AGG - chr3_1:43404931-43404950 Msa0358470:three_prime_UTR 15.0%
!! AAAAAAAAACAGCATTAAAT+AGG + chr3_1:43408767-43408786 None:intergenic 15.0%
!! TCGATTTCAAAAAATAATTT+AGG - chr3_1:43409189-43409208 Msa0358470:CDS 15.0%
!! TTTCAAAAAATAATTTAGGA+AGG - chr3_1:43409193-43409212 Msa0358470:CDS 15.0%
!! AAATTAGATAAAACTGTAAA+AGG - chr3_1:43409583-43409602 Msa0358470:CDS 15.0%
!! AGAGGAAAAAAATAAGAAAA+TGG + chr3_1:43404050-43404069 None:intergenic 20.0%
!!! TTTTTCATTTCACTCTTTTA+AGG - chr3_1:43404315-43404334 Msa0358470:three_prime_UTR 20.0%
!! AAAACAAATTCAAACTTACA+GGG + chr3_1:43404908-43404927 None:intergenic 20.0%
!! AAAAACAAATTCAAACTTAC+AGG + chr3_1:43404909-43404928 None:intergenic 20.0%
!!! CTTATATGTTTTTTTTGTTC+TGG - chr3_1:43404992-43405011 Msa0358470:three_prime_UTR 20.0%
!!! CAAAAAATAGCAATTTGTTA+TGG + chr3_1:43405493-43405512 None:intergenic 20.0%
!!! TATTTTGTTTTTACGTTGTT+TGG - chr3_1:43405885-43405904 Msa0358470:intron 20.0%
!! ATAATCTGTGTTTGATTAAT+TGG - chr3_1:43405977-43405996 Msa0358470:intron 20.0%
!! TAATCTGTGTTTGATTAATT+GGG - chr3_1:43405978-43405997 Msa0358470:intron 20.0%
!! AGTCAATGAAATCAAAATTA+GGG + chr3_1:43406132-43406151 None:intergenic 20.0%
!! AAGTCAATGAAATCAAAATT+AGG + chr3_1:43406133-43406152 None:intergenic 20.0%
!! TTTAATTACCATAAGAATTG+AGG + chr3_1:43406385-43406404 None:intergenic 20.0%
!!! AGATCGTGAATTTTTTTTAA+AGG + chr3_1:43406496-43406515 None:intergenic 20.0%
!!! AAAATTCACGATCTTTTATT+AGG - chr3_1:43406502-43406521 Msa0358470:intron 20.0%
!!! GCAACTAAAGAATTTAAAAT+TGG + chr3_1:43406827-43406846 None:intergenic 20.0%
!!! ATTTTAAATTCTTTAGTTGC+AGG - chr3_1:43406827-43406846 Msa0358470:CDS 20.0%
!!! AGTTAATGTTGTTTAAATGA+TGG - chr3_1:43406962-43406981 Msa0358470:intron 20.0%
!! AAAAAAATTATTCATGAACG+AGG + chr3_1:43406999-43407018 None:intergenic 20.0%
!!! TTTTTTTTTCTTGTTCTGAT+TGG - chr3_1:43407039-43407058 Msa0358470:intron 20.0%
!!! TTTTTTTTCTTGTTCTGATT+GGG - chr3_1:43407040-43407059 Msa0358470:intron 20.0%
!! AATAATATGAAGCACAATTA+AGG + chr3_1:43407648-43407667 None:intergenic 20.0%
!! TTAATTGTGCTTCATATTAT+TGG - chr3_1:43407647-43407666 Msa0358470:CDS 20.0%
!! ATTCATTGTCTTTATGAAAA+GGG - chr3_1:43407853-43407872 Msa0358470:intron 20.0%
!!! TTCTTTTTCTATATTTTCCA+AGG + chr3_1:43408183-43408202 None:intergenic 20.0%
!! TTGGAAAATATAGAAAAAGA+AGG - chr3_1:43408182-43408201 Msa0358470:CDS 20.0%
!! TGGAAAATATAGAAAAAGAA+GGG - chr3_1:43408183-43408202 Msa0358470:CDS 20.0%
!! CAAAACATTGTTTACTATAA+AGG - chr3_1:43408709-43408728 Msa0358470:intron 20.0%
!!! AACTTTTCACTTTTCTAAAA+GGG - chr3_1:43408966-43408985 Msa0358470:intron 20.0%
!! AAAACATTTATCAAAGAAAC+TGG + chr3_1:43409081-43409100 None:intergenic 20.0%
!!! GTGATTTTGATTTGATTAAT+TGG + chr3_1:43409126-43409145 None:intergenic 20.0%
!! ATAGACATTAGAATGAAAAT+TGG - chr3_1:43409306-43409325 Msa0358470:CDS 20.0%
!! TTTCAATACCATAAAAAACT+AGG + chr3_1:43409437-43409456 None:intergenic 20.0%
!!! TTATTCTTTTTTAGCTCAAA+AGG - chr3_1:43409523-43409542 Msa0358470:CDS 20.0%
!! GAAATTTAGAGATAATAAGT+CGG - chr3_1:43409819-43409838 Msa0358470:five_prime_UTR 20.0%
!!! TATCTATTACATCACATTTT+TGG - chr3_1:43409849-43409868 Msa0358470:five_prime_UTR 20.0%
!! TCACTTAATAGAAAAATGAT+TGG - chr3_1:43409893-43409912 Msa0358470:five_prime_UTR 20.0%
!! TTATAGTCAAGAAAGTATAG+AGG + chr3_1:43404068-43404087 None:intergenic 25.0%
! AAAGATGGTAAAAATGATTG+TGG + chr3_1:43404474-43404493 None:intergenic 25.0%
!!! ACAATCATTTTTACCATCTT+TGG - chr3_1:43404473-43404492 Msa0358470:three_prime_UTR 25.0%
! CTGCAAAGAAATTGAAAATT+GGG - chr3_1:43404688-43404707 Msa0358470:three_prime_UTR 25.0%
! GAGAAAAAAGGAAAATTGAT+TGG - chr3_1:43404943-43404962 Msa0358470:three_prime_UTR 25.0%
! AAAAAAGGAAAATTGATTGG+TGG - chr3_1:43404946-43404965 Msa0358470:three_prime_UTR 25.0%
!! TGCAATTTTGAACTCATATA+TGG - chr3_1:43405036-43405055 Msa0358470:three_prime_UTR 25.0%
!! ATTTTGAACTCATATATGGA+TGG - chr3_1:43405040-43405059 Msa0358470:three_prime_UTR 25.0%
! TTGAGTTCAGAAAAAAACAA+AGG - chr3_1:43405081-43405100 Msa0358470:three_prime_UTR 25.0%
! CAGATATTAAAATCCGAATA+AGG + chr3_1:43405142-43405161 None:intergenic 25.0%
! GATATATTTCAATGTGTTTG+TGG - chr3_1:43405161-43405180 Msa0358470:three_prime_UTR 25.0%
!!! TTTGAAGTTTTTATGCAGTT+CGG - chr3_1:43405190-43405209 Msa0358470:three_prime_UTR 25.0%
! GGATCAATATTGTCAAATAA+CGG - chr3_1:43405351-43405370 Msa0358470:three_prime_UTR 25.0%
! TCAATGTGATAAATGAATGA+AGG + chr3_1:43405577-43405596 None:intergenic 25.0%
!! ACTAGAATTTTGAATGTGAA+TGG - chr3_1:43405941-43405960 Msa0358470:intron 25.0%
! GTCAATGAAATCAAAATTAG+GGG + chr3_1:43406131-43406150 None:intergenic 25.0%
! TAACTATTATATCAGTCTTC+TGG - chr3_1:43406531-43406550 Msa0358470:intron 25.0%
! CATAATATCAATATGGTGAA+AGG - chr3_1:43406628-43406647 Msa0358470:intron 25.0%
! TCTTACAACCAAACAATAAA+CGG + chr3_1:43407082-43407101 None:intergenic 25.0%
! TCCATATTATGACTAAAGTA+TGG - chr3_1:43407112-43407131 Msa0358470:intron 25.0%
! ATTCTATCATCTATACAATC+AGG - chr3_1:43407176-43407195 Msa0358470:intron 25.0%
! TTTCCAATGCTAAATGTTAA+GGG + chr3_1:43407231-43407250 None:intergenic 25.0%
! TGATGAATAATATGAGTAGA+GGG + chr3_1:43407588-43407607 None:intergenic 25.0%
! ATGATGAATAATATGAGTAG+AGG + chr3_1:43407589-43407608 None:intergenic 25.0%
! CTACTCATATTATTCATCAT+CGG - chr3_1:43407589-43407608 Msa0358470:intron 25.0%
! ACAGGAAGGAAAAAAAAAAT+AGG - chr3_1:43407725-43407744 Msa0358470:CDS 25.0%
!!! GCATTTTTTTTTTCTTTCTC+TGG - chr3_1:43407801-43407820 Msa0358470:CDS 25.0%
! CATTCATTGTCTTTATGAAA+AGG - chr3_1:43407852-43407871 Msa0358470:intron 25.0%
! AAGTCAACAAGAGTTTATTA+TGG - chr3_1:43407894-43407913 Msa0358470:intron 25.0%
! AGAGTTTATTATGGAAAAGA+TGG - chr3_1:43407903-43407922 Msa0358470:intron 25.0%
!!! AAACAATAGAATTTGCTAAC+AGG - chr3_1:43408419-43408438 Msa0358470:intron 25.0%
!! TCAAACTTACAAGGTTATTT+TGG - chr3_1:43408481-43408500 Msa0358470:intron 25.0%
! GAACATTTATTTCAATCCAT+TGG + chr3_1:43408658-43408677 None:intergenic 25.0%
! ATAAATGTTCCTGTTTATAG+AGG - chr3_1:43408668-43408687 Msa0358470:intron 25.0%
!!! CAACTTTTCACTTTTCTAAA+AGG - chr3_1:43408965-43408984 Msa0358470:intron 25.0%
! ATGCATTTATCAACAAGAAA+AGG + chr3_1:43408999-43409018 None:intergenic 25.0%
! AAACTCAATACAAATTTCCA+TGG + chr3_1:43409254-43409273 None:intergenic 25.0%
!! TTTTGTAACAAAGATAAGCT+AGG - chr3_1:43409271-43409290 Msa0358470:CDS 25.0%
! ATTAGAATGAAAATTGGAGT+TGG - chr3_1:43409312-43409331 Msa0358470:CDS 25.0%
!!! ACATTTGACCTAGTTTTTTA+TGG - chr3_1:43409426-43409445 Msa0358470:CDS 25.0%
! TAAAGCTAAATTTGTCTGTT+TGG - chr3_1:43409497-43409516 Msa0358470:CDS 25.0%
! GAGAAGTCAAAAATAAAGTT+AGG - chr3_1:43409712-43409731 Msa0358470:five_prime_UTR 25.0%
! TAAATTTCCCTTTGATTGTT+TGG + chr3_1:43409807-43409826 None:intergenic 25.0%
!!! AAATGATTGGTTGTTGTTTA+AGG - chr3_1:43409906-43409925 Msa0358470:five_prime_UTR 25.0%
ATGTGAAAGAATGTGTCTTT+AGG + chr3_1:43404220-43404239 None:intergenic 30.0%
!!! ATCATGGTTTTTGAGGTAAA+GGG + chr3_1:43404372-43404391 None:intergenic 30.0%
!!! AATCATGGTTTTTGAGGTAA+AGG + chr3_1:43404373-43404392 None:intergenic 30.0%
! TGATGAAATCATGGTTTTTG+AGG + chr3_1:43404379-43404398 None:intergenic 30.0%
TTGTCTCAATGATGAAATCA+TGG + chr3_1:43404388-43404407 None:intergenic 30.0%
AAATGATTGTGGTTGAACTA+GGG + chr3_1:43404463-43404482 None:intergenic 30.0%
AAAATGATTGTGGTTGAACT+AGG + chr3_1:43404464-43404483 None:intergenic 30.0%
!! TCATTTTTACCATCTTTGGT+TGG - chr3_1:43404477-43404496 Msa0358470:three_prime_UTR 30.0%
!!! ATCAGAGAAGAGTTTTGAAA+AGG - chr3_1:43404593-43404612 Msa0358470:three_prime_UTR 30.0%
!!! TCAGAGAAGAGTTTTGAAAA+GGG - chr3_1:43404594-43404613 Msa0358470:three_prime_UTR 30.0%
GCTGCAAAGAAATTGAAAAT+TGG - chr3_1:43404687-43404706 Msa0358470:three_prime_UTR 30.0%
! TTGGGATATATTTTGCAACT+TGG - chr3_1:43404706-43404725 Msa0358470:three_prime_UTR 30.0%
! GATATATTTTGCAACTTGGT+GGG - chr3_1:43404710-43404729 Msa0358470:three_prime_UTR 30.0%
TCTTATGATGTTGATCTCTT+GGG - chr3_1:43404827-43404846 Msa0358470:three_prime_UTR 30.0%
CAAAATTCAAGATCAGTCTT+AGG + chr3_1:43404873-43404892 None:intergenic 30.0%
! CTAAGACTGATCTTGAATTT+TGG - chr3_1:43404871-43404890 Msa0358470:three_prime_UTR 30.0%
AATTGATTGGTGGAATTGAT+AGG - chr3_1:43404956-43404975 Msa0358470:three_prime_UTR 30.0%
! GATGGTATTGAAAACTATGT+TGG - chr3_1:43405058-43405077 Msa0358470:three_prime_UTR 30.0%
ATATTTCAATGTGTTTGTGG+AGG - chr3_1:43405164-43405183 Msa0358470:three_prime_UTR 30.0%
ATAGAGTACAAAGGATTGAA+TGG + chr3_1:43405322-43405341 None:intergenic 30.0%
ATTATGCACATAGAGTACAA+AGG + chr3_1:43405331-43405350 None:intergenic 30.0%
TTTGTACTCTATGTGCATAA+TGG - chr3_1:43405330-43405349 Msa0358470:three_prime_UTR 30.0%
! AGCTAAGTGTTGTCAAATAA+CGG - chr3_1:43405426-43405445 Msa0358470:three_prime_UTR 30.0%
CGAACAATTGTGAAATGATA+TGG - chr3_1:43405544-43405563 Msa0358470:three_prime_UTR 30.0%
TTCTTTGATGTTTCAACTTC+AGG - chr3_1:43405613-43405632 Msa0358470:intron 30.0%
TTTACACATATCATCAAGAG+TGG - chr3_1:43405701-43405720 Msa0358470:intron 30.0%
GAGCTCAATTTCAATATGAT+TGG - chr3_1:43405839-43405858 Msa0358470:intron 30.0%
CCAAAAAAATGCAAAACTAC+TGG + chr3_1:43406006-43406025 None:intergenic 30.0%
!! CCAGTAGTTTTGCATTTTTT+TGG - chr3_1:43406003-43406022 Msa0358470:intron 30.0%
!!! CATTTTTTTGGCTAGTAATC+TGG - chr3_1:43406015-43406034 Msa0358470:intron 30.0%
ATTACAAGAAACATGTTCGT+TGG + chr3_1:43406081-43406100 None:intergenic 30.0%
!!! TTTTTTTCCTTCCCTTTTTC+AGG - chr3_1:43406151-43406170 Msa0358470:intron 30.0%
!!! TTCCCTTTTTCAGGTTTTAT+GGG - chr3_1:43406160-43406179 Msa0358470:intron 30.0%
AAATTGGACCTCAATTCTTA+TGG - chr3_1:43406374-43406393 Msa0358470:intron 30.0%
CGATGACAACAAACATAATA+GGG + chr3_1:43406433-43406452 None:intergenic 30.0%
ACGATGACAACAAACATAAT+AGG + chr3_1:43406434-43406453 None:intergenic 30.0%
GTCGAATGAATCAATGATTT+AGG + chr3_1:43406595-43406614 None:intergenic 30.0%
ATTGATATTATGCGTGTCTT+TGG + chr3_1:43406620-43406639 None:intergenic 30.0%
AGACACGCATAATATCAATA+TGG - chr3_1:43406621-43406640 Msa0358470:intron 30.0%
!!! TGTCCATCCTTATTTTGATT+TGG - chr3_1:43406872-43406891 Msa0358470:intron 30.0%
!!! GTCCATCCTTATTTTGATTT+GGG - chr3_1:43406873-43406892 Msa0358470:intron 30.0%
TCAAGTCCCAAATCAAAATA+AGG + chr3_1:43406882-43406901 None:intergenic 30.0%
ACATTAACTCATAAAAACCC+AGG + chr3_1:43406951-43406970 None:intergenic 30.0%
ACTTTAGTCATAATATGGAG+AGG + chr3_1:43407111-43407130 None:intergenic 30.0%
GCCATACTTTAGTCATAATA+TGG + chr3_1:43407116-43407135 None:intergenic 30.0%
TATTATGACTAAAGTATGGC+TGG - chr3_1:43407116-43407135 Msa0358470:intron 30.0%
GTTTCCAATGCTAAATGTTA+AGG + chr3_1:43407232-43407251 None:intergenic 30.0%
TATGACAGATATACGTTTCA+TGG + chr3_1:43407256-43407275 None:intergenic 30.0%
TATTACTGTTACTACATGTC+AGG - chr3_1:43407516-43407535 Msa0358470:intron 30.0%
ATTACTGTTACTACATGTCA+GGG - chr3_1:43407517-43407536 Msa0358470:intron 30.0%
! TGAATGAGTTTGAAATCCTA+TGG + chr3_1:43407838-43407857 None:intergenic 30.0%
TTGTCTTTATGAAAAGGGTT+TGG - chr3_1:43407858-43407877 Msa0358470:intron 30.0%
GTTTATTATGGAAAAGATGG+AGG - chr3_1:43407906-43407925 Msa0358470:intron 30.0%
! TAGGTGATCCAATGTTTTAT+TGG - chr3_1:43407934-43407953 Msa0358470:intron 30.0%
TATAGCTGCCAATAAAACAT+TGG + chr3_1:43407945-43407964 None:intergenic 30.0%
! TTTTATTGGCAGCTATACTT+GGG - chr3_1:43407948-43407967 Msa0358470:intron 30.0%
AAGTTCAAACCAATAGAGTT+AGG + chr3_1:43407981-43408000 None:intergenic 30.0%
AAGAAGGGTTAGAAACAATT+TGG - chr3_1:43408198-43408217 Msa0358470:CDS 30.0%
CTGCAAAAATCAGTAAAACA+AGG + chr3_1:43408396-43408415 None:intergenic 30.0%
!!! CTTGTTTTACTGATTTTTGC+AGG - chr3_1:43408394-43408413 Msa0358470:intron 30.0%
! TTATGATAATGTTTCTCAGC+AGG + chr3_1:43408591-43408610 None:intergenic 30.0%
! TTTAATTTCTGCAATGCCAA+TGG - chr3_1:43408639-43408658 Msa0358470:intron 30.0%
! TGAGCTTTGTATGTTATGTT+TGG - chr3_1:43408841-43408860 Msa0358470:intron 30.0%
AAAGTTCACATGGAAACTTA+GGG + chr3_1:43408930-43408949 None:intergenic 30.0%
! TTTAGGAAGGCAAATCTTTT+AGG - chr3_1:43409206-43409225 Msa0358470:CDS 30.0%
TTAGACTACAGACTATTCTA+TGG + chr3_1:43409747-43409766 None:intergenic 30.0%
ACTGTATACCAAACAATCAA+AGG - chr3_1:43409796-43409815 Msa0358470:five_prime_UTR 30.0%
CTGTATACCAAACAATCAAA+GGG - chr3_1:43409797-43409816 Msa0358470:five_prime_UTR 30.0%
!!! CACTCTTTTAAGGTTTCTGT+CGG - chr3_1:43404325-43404344 Msa0358470:three_prime_UTR 35.0%
ATTTCATCATTGAGACAACC+TGG - chr3_1:43404390-43404409 Msa0358470:three_prime_UTR 35.0%
! TTTTTACCATCTTTGGTTGG+TGG - chr3_1:43404480-43404499 Msa0358470:three_prime_UTR 35.0%
!!! TGTGTTGGTGTTGGAAATTT+TGG - chr3_1:43404552-43404571 Msa0358470:three_prime_UTR 35.0%
!!! GTGTTGGTGTTGGAAATTTT+GGG - chr3_1:43404553-43404572 Msa0358470:three_prime_UTR 35.0%
!!! GAGTTTTGAAAAGGGTGATT+TGG - chr3_1:43404602-43404621 Msa0358470:three_prime_UTR 35.0%
TTATGAAGCTGATAGATCAG+AGG - chr3_1:43404638-43404657 Msa0358470:three_prime_UTR 35.0%
! GGATATATTTTGCAACTTGG+TGG - chr3_1:43404709-43404728 Msa0358470:three_prime_UTR 35.0%
CTCTTATGATGTTGATCTCT+TGG - chr3_1:43404826-43404845 Msa0358470:three_prime_UTR 35.0%
! TTTTAGATTCCGAACTGCAT+AGG - chr3_1:43405214-43405233 Msa0358470:three_prime_UTR 35.0%
TTTAGATTCCGAACTGCATA+GGG - chr3_1:43405215-43405234 Msa0358470:three_prime_UTR 35.0%
TGTGATTGACAGCAATGTAA+CGG - chr3_1:43405518-43405537 Msa0358470:three_prime_UTR 35.0%
TGTAAACGATACAGCAACTT+TGG + chr3_1:43405687-43405706 None:intergenic 35.0%
! TCTGGTTTCGAGATTTATCT+TGG - chr3_1:43405742-43405761 Msa0358470:intron 35.0%
CTGGTTTCGAGATTTATCTT+GGG - chr3_1:43405743-43405762 Msa0358470:intron 35.0%
! CTGTCTTTAGTTCCAATCAT+TGG - chr3_1:43405791-43405810 Msa0358470:intron 35.0%
! TCTTTAGTTCCAATCATTGG+TGG - chr3_1:43405794-43405813 Msa0358470:intron 35.0%
CATAAAACCTGAAAAAGGGA+AGG + chr3_1:43406161-43406180 None:intergenic 35.0%
!!! CTTCCCTTTTTCAGGTTTTA+TGG - chr3_1:43406159-43406178 Msa0358470:intron 35.0%
!!! TCCCTTTTTCAGGTTTTATG+GGG - chr3_1:43406161-43406180 Msa0358470:intron 35.0%
CAATATGGTGAAAGGTCAAA+TGG - chr3_1:43406636-43406655 Msa0358470:intron 35.0%
GTCCCAAATCAAAATAAGGA+TGG + chr3_1:43406878-43406897 None:intergenic 35.0%
TTCCACTTCCGTTTATTGTT+TGG - chr3_1:43407071-43407090 Msa0358470:intron 35.0%
AACCAAACAATAAACGGAAG+TGG + chr3_1:43407076-43407095 None:intergenic 35.0%
TCTCCCTTAACATTTAGCAT+TGG - chr3_1:43407225-43407244 Msa0358470:intron 35.0%
! AAGTACCTGAGAGTATAAGA+AGG + chr3_1:43407355-43407374 None:intergenic 35.0%
TGAAAGATCCATTACGAAGA+GGG - chr3_1:43407671-43407690 Msa0358470:CDS 35.0%
TCTTTATGAAAAGGGTTTGG+TGG - chr3_1:43407861-43407880 Msa0358470:intron 35.0%
!! GTTTTATTGGCAGCTATACT+TGG - chr3_1:43407947-43407966 Msa0358470:intron 35.0%
TCAAACCAATAGAGTTAGGT+AGG + chr3_1:43407977-43407996 None:intergenic 35.0%
GAAAAGGAATATGTGATGGT+AGG + chr3_1:43408009-43408028 None:intergenic 35.0%
CTTGGAAAAGGAATATGTGA+TGG + chr3_1:43408013-43408032 None:intergenic 35.0%
!! TGTTGACATTGACTTGGAAA+AGG + chr3_1:43408025-43408044 None:intergenic 35.0%
! AACTCATGTTGACATTGACT+TGG + chr3_1:43408031-43408050 None:intergenic 35.0%
AAGTCAATGTCAACATGAGT+TGG - chr3_1:43408030-43408049 Msa0358470:intron 35.0%
TATTAGAAGCCTCAATGTGA+AGG + chr3_1:43408118-43408137 None:intergenic 35.0%
TTCACATTGAGGCTTCTAAT+AGG - chr3_1:43408117-43408136 Msa0358470:intron 35.0%
GCTTCTAATAGGAGATTCAA+TGG - chr3_1:43408128-43408147 Msa0358470:intron 35.0%
!! TACATGGAAACTGCTTTTAC+TGG + chr3_1:43408157-43408176 None:intergenic 35.0%
AGTAAAAGCAGTTTCCATGT+AGG - chr3_1:43408156-43408175 Msa0358470:intron 35.0%
! ATATTTTCCAAGGTCCTACA+TGG + chr3_1:43408173-43408192 None:intergenic 35.0%
CTGTCATTCTCAAACTTACA+AGG - chr3_1:43408472-43408491 Msa0358470:intron 35.0%
!!! CAAGGTTATTTTGGAACATG+TGG - chr3_1:43408490-43408509 Msa0358470:intron 35.0%
! TGCTGGATTTTTGTAAGACT+AGG - chr3_1:43408514-43408533 Msa0358470:intron 35.0%
TTTGTAAGACTAGGATGATC+CGG - chr3_1:43408523-43408542 Msa0358470:intron 35.0%
TATCTACATGCACTAAAAGC+CGG + chr3_1:43408545-43408564 None:intergenic 35.0%
TATTCTCAGCCTCTATAAAC+AGG + chr3_1:43408680-43408699 None:intergenic 35.0%
! GTTTCTTTGTTTGCTGACAT+TGG - chr3_1:43408791-43408810 Msa0358470:intron 35.0%
ATGTTATGTTTGGAAGACAG+AGG - chr3_1:43408851-43408870 Msa0358470:intron 35.0%
! GAAGGCACATACAAATGAAA+GGG + chr3_1:43408901-43408920 None:intergenic 35.0%
! TGAAGGCACATACAAATGAA+AGG + chr3_1:43408902-43408921 None:intergenic 35.0%
CAAAGTTCACATGGAAACTT+AGG + chr3_1:43408931-43408950 None:intergenic 35.0%
TTCACAAGACAAAGTTCACA+TGG + chr3_1:43408940-43408959 None:intergenic 35.0%
TTCTCTTCAGTGTGATTGTT+TGG - chr3_1:43409099-43409118 Msa0358470:intron 35.0%
!!! ATCCAATGTCTTGTTTTCCA+TGG - chr3_1:43409234-43409253 Msa0358470:CDS 35.0%
TTCCATGGAAAACAAGACAT+TGG + chr3_1:43409239-43409258 None:intergenic 35.0%
GTCTGTAGTCTAATGATTAG+AGG - chr3_1:43409754-43409773 Msa0358470:five_prime_UTR 35.0%
TGCTATTGTTTCGCAGTGTT+TGG - chr3_1:43404145-43404164 Msa0358470:three_prime_UTR 40.0%
ATCTCAACCCTGACACAAAA+GGG - chr3_1:43404252-43404271 Msa0358470:three_prime_UTR 40.0%
! AAGACAACCCTTTTGTGTCA+GGG + chr3_1:43404262-43404281 None:intergenic 40.0%
! AAAGACAACCCTTTTGTGTC+AGG + chr3_1:43404263-43404282 None:intergenic 40.0%
! GATTTTCCACCAACCAAAGA+TGG + chr3_1:43404489-43404508 None:intergenic 40.0%
CCAACACATGCAATATGAAG+AGG + chr3_1:43404540-43404559 None:intergenic 40.0%
CCTCTTCATATTGCATGTGT+TGG - chr3_1:43404537-43404556 Msa0358470:three_prime_UTR 40.0%
! CATATTGCATGTGTTGGTGT+TGG - chr3_1:43404543-43404562 Msa0358470:three_prime_UTR 40.0%
AATTTCTTTGCAGCCTCTGA+AGG + chr3_1:43404681-43404700 None:intergenic 40.0%
TTGATGTAAGCCAAGGGTAA+GGG + chr3_1:43404785-43404804 None:intergenic 40.0%
!! AGAGAGTTGATGTAAGCCAA+GGG + chr3_1:43404791-43404810 None:intergenic 40.0%
TAAAATCCGAATAAGGCACG+CGG + chr3_1:43405135-43405154 None:intergenic 40.0%
GTACAAAGGATTGAATGGAC+TGG + chr3_1:43405317-43405336 None:intergenic 40.0%
GAAACCAGAACACTAAAAGC+AGG + chr3_1:43405731-43405750 None:intergenic 40.0%
GGAACTAAAGACAGATAGAC+TGG + chr3_1:43405785-43405804 None:intergenic 40.0%
TTTGGCGCAATATAAGTTCG+AGG - chr3_1:43405903-43405922 Msa0358470:intron 40.0%
ACAAGAAACATGTTCGTTGG+TGG + chr3_1:43406078-43406097 None:intergenic 40.0%
CCCCCATAAAACCTGAAAAA+GGG + chr3_1:43406165-43406184 None:intergenic 40.0%
!!! CCCTTTTTCAGGTTTTATGG+GGG - chr3_1:43406162-43406181 Msa0358470:intron 40.0%
!!! CCTTTTTCGAGAAGATGTTG+CGG + chr3_1:43406216-43406235 None:intergenic 40.0%
CGCAACATCTTCTCGAAAAA+GGG - chr3_1:43406214-43406233 Msa0358470:intron 40.0%
GCAACATCTTCTCGAAAAAG+GGG - chr3_1:43406215-43406234 Msa0358470:intron 40.0%
TTCTCGAAAAAGGGGATGAA+GGG - chr3_1:43406223-43406242 Msa0358470:intron 40.0%
ATGAAGGGAAAGTCTGTTAG+TGG - chr3_1:43406238-43406257 Msa0358470:intron 40.0%
! AAAGGGTGTGAGAATTGCAA+GGG + chr3_1:43406296-43406315 None:intergenic 40.0%
AAAACAGCTCTCGCTGAAAT+TGG - chr3_1:43406358-43406377 Msa0358470:intron 40.0%
ATAGATTGAGTAGTCTCGAC+AGG + chr3_1:43406689-43406708 None:intergenic 40.0%
ATATGTAGCTCCAACAAGTC+AGG - chr3_1:43407394-43407413 Msa0358470:intron 40.0%
! ACACCATTAACCTGACTTGT+TGG + chr3_1:43407407-43407426 None:intergenic 40.0%
! GAGGGCACAGTAAAAAATGA+GGG + chr3_1:43407570-43407589 None:intergenic 40.0%
! AGAGGGCACAGTAAAAAATG+AGG + chr3_1:43407571-43407590 None:intergenic 40.0%
CTGAAAGATCCATTACGAAG+AGG - chr3_1:43407670-43407689 Msa0358470:CDS 40.0%
AACACATTCCCTCTTCGTAA+TGG + chr3_1:43407682-43407701 None:intergenic 40.0%
ATTACGAAGAGGGAATGTGT+TGG - chr3_1:43407681-43407700 Msa0358470:CDS 40.0%
TTACGAAGAGGGAATGTGTT+GGG - chr3_1:43407682-43407701 Msa0358470:CDS 40.0%
!! GTTTGTGGTTTGCTCATTAC+AGG - chr3_1:43407707-43407726 Msa0358470:CDS 40.0%
ATAGGACTAGAACCTCAAAG+TGG - chr3_1:43407743-43407762 Msa0358470:CDS 40.0%
ACCAATGTGCTTTGCTAGAA+GGG + chr3_1:43407773-43407792 None:intergenic 40.0%
! TCTGGAGTAAAAACTGCCAT+AGG - chr3_1:43407819-43407838 Msa0358470:CDS 40.0%
GGATTCCTACCTAACTCTAT+TGG - chr3_1:43407969-43407988 Msa0358470:intron 40.0%
AAGGAATATGTGATGGTAGG+TGG + chr3_1:43408006-43408025 None:intergenic 40.0%
ACCTACCAACTGTAGAAATC+TGG - chr3_1:43408255-43408274 Msa0358470:CDS 40.0%
TCCAGATTTCTACAGTTGGT+AGG + chr3_1:43408259-43408278 None:intergenic 40.0%
CAAGTCCAGATTTCTACAGT+TGG + chr3_1:43408263-43408282 None:intergenic 40.0%
GACTTGAACCTAAGTCACAA+CGG - chr3_1:43408277-43408296 Msa0358470:CDS 40.0%
ACTTGAACCTAAGTCACAAC+GGG - chr3_1:43408278-43408297 Msa0358470:CDS 40.0%
TTGCTAACAGGAAATCTTCG+AGG - chr3_1:43408431-43408450 Msa0358470:intron 40.0%
TGCTAACAGGAAATCTTCGA+GGG - chr3_1:43408432-43408451 Msa0358470:intron 40.0%
ACCACCTTTCAAGATCTCAG+AGG - chr3_1:43404182-43404201 Msa0358470:three_prime_UTR 45.0%
CCACCTTTCAAGATCTCAGA+GGG - chr3_1:43404183-43404202 Msa0358470:three_prime_UTR 45.0%
!! ATGCCCTCTGAGATCTTGAA+AGG + chr3_1:43404189-43404208 None:intergenic 45.0%
GATCTCAACCCTGACACAAA+AGG - chr3_1:43404251-43404270 Msa0358470:three_prime_UTR 45.0%
CAACCTGGTATTGTCATCAC+TGG - chr3_1:43404405-43404424 Msa0358470:three_prime_UTR 45.0%
GAACCAGTGATGACAATACC+AGG + chr3_1:43404411-43404430 None:intergenic 45.0%
!! ACTGGTTCTGATGCTGGTTT+AGG - chr3_1:43404423-43404442 Msa0358470:three_prime_UTR 45.0%
!! CTGGTTCTGATGCTGGTTTA+GGG - chr3_1:43404424-43404443 Msa0358470:three_prime_UTR 45.0%
GCTGATAGATCAGAGGTTGA+AGG - chr3_1:43404645-43404664 Msa0358470:three_prime_UTR 45.0%
TGAATGCTTACCCTTACCCT+TGG - chr3_1:43404772-43404791 Msa0358470:three_prime_UTR 45.0%
GTTGATGTAAGCCAAGGGTA+AGG + chr3_1:43404786-43404805 None:intergenic 45.0%
!! GAGAGAGTTGATGTAAGCCA+AGG + chr3_1:43404792-43404811 None:intergenic 45.0%
TCAACTCTCTCACTTGCTTG+TGG - chr3_1:43404801-43404820 Msa0358470:three_prime_UTR 45.0%
AAAATCCGAATAAGGCACGC+GGG + chr3_1:43405134-43405153 None:intergenic 45.0%
GTTATGACACTGTAGCGTAG+CGG - chr3_1:43405459-43405478 Msa0358470:three_prime_UTR 45.0%
! GTTGCTGTTGCACACACAAT+TGG - chr3_1:43405635-43405654 Msa0358470:intron 45.0%
ACACACAATTGGACATGTCG+CGG - chr3_1:43405646-43405665 Msa0358470:intron 45.0%
AAGACAGATAGACTGGCACA+GGG + chr3_1:43405778-43405797 None:intergenic 45.0%
AAAGACAGATAGACTGGCAC+AGG + chr3_1:43405779-43405798 None:intergenic 45.0%
AGTGCACATCCACCAATGAT+TGG + chr3_1:43405806-43405825 None:intergenic 45.0%
GCGCAATATAAGTTCGAGGT+AGG - chr3_1:43405907-43405926 Msa0358470:intron 45.0%
GCCCCCATAAAACCTGAAAA+AGG + chr3_1:43406166-43406185 None:intergenic 45.0%
GGGGGCTATGATATCAAATC+TGG - chr3_1:43406180-43406199 Msa0358470:intron 45.0%
CCGCAACATCTTCTCGAAAA+AGG - chr3_1:43406213-43406232 Msa0358470:intron 45.0%
CTTCTCGAAAAAGGGGATGA+AGG - chr3_1:43406222-43406241 Msa0358470:intron 45.0%
! CAAAGGGTGTGAGAATTGCA+AGG + chr3_1:43406297-43406316 None:intergenic 45.0%
CCTTCGACAGCAATTGCAAA+GGG + chr3_1:43406313-43406332 None:intergenic 45.0%
TCCTTCGACAGCAATTGCAA+AGG + chr3_1:43406314-43406333 None:intergenic 45.0%
CTCTCGCGTATTCTCTACAT+AGG + chr3_1:43406781-43406800 None:intergenic 45.0%
TCAGGTGTCTTACATGTCGT+TGG - chr3_1:43407194-43407213 Msa0358470:intron 45.0%
GCTCCAACAAGTCAGGTTAA+TGG - chr3_1:43407401-43407420 Msa0358470:intron 45.0%
GTCTTGTGTACGACACTTGT+TGG - chr3_1:43407427-43407446 Msa0358470:intron 45.0%
TACGAAGAGGGAATGTGTTG+GGG - chr3_1:43407683-43407702 Msa0358470:CDS 45.0%
!! GTGGTTTGCTCATTACAGGA+AGG - chr3_1:43407711-43407730 Msa0358470:CDS 45.0%
TAGAAGGGTTCACCACTTTG+AGG + chr3_1:43407758-43407777 None:intergenic 45.0%
ACCCTTCTAGCAAAGCACAT+TGG - chr3_1:43407769-43407788 Msa0358470:CDS 45.0%
CACCAATGTGCTTTGCTAGA+AGG + chr3_1:43407774-43407793 None:intergenic 45.0%
CTTCTAGCAAAGCACATTGG+TGG - chr3_1:43407772-43407791 Msa0358470:CDS 45.0%
GGAAAAGATGGAGGCTCTTT+AGG - chr3_1:43407915-43407934 Msa0358470:intron 45.0%
GTCGACAAGGAAACTCAGAA+AGG + chr3_1:43408060-43408079 None:intergenic 45.0%
AAATCATGTGCTCAGGTGTC+TGG + chr3_1:43408087-43408106 None:intergenic 45.0%
AGACACCTGAGCACATGATT+TGG - chr3_1:43408086-43408105 Msa0358470:intron 45.0%
TTGGACCAAATCATGTGCTC+AGG + chr3_1:43408094-43408113 None:intergenic 45.0%
TGGTCCAAACCTTCACATTG+AGG - chr3_1:43408106-43408125 Msa0358470:intron 45.0%
GAAGCCTCAATGTGAAGGTT+TGG + chr3_1:43408113-43408132 None:intergenic 45.0%
GTCCAACCATTTGTGTCAAC+TGG - chr3_1:43408311-43408330 Msa0358470:CDS 45.0%
CTCCAGTTGACACAAATGGT+TGG + chr3_1:43408316-43408335 None:intergenic 45.0%
CCAACTCCAGTTGACACAAA+TGG + chr3_1:43408320-43408339 None:intergenic 45.0%
CCATTTGTGTCAACTGGAGT+TGG - chr3_1:43408317-43408336 Msa0358470:CDS 45.0%
!!! ATTTTGGAACATGTGGCTGC+TGG - chr3_1:43408497-43408516 Msa0358470:intron 45.0%
TCACATGGAAACTTAGGGTC+AGG + chr3_1:43408925-43408944 None:intergenic 45.0%
CACTACTTCAGGTGTGTACA+AGG + chr3_1:43409376-43409395 None:intergenic 45.0%
CTTGTACACACCTGAAGTAG+TGG - chr3_1:43409374-43409393 Msa0358470:CDS 45.0%
!! AATTAATAAATAATTAAGAA+GGG + chr3_1:43404109-43404128 None:intergenic 5.0%
!! AAATTAATAAATAATTAAGA+AGG + chr3_1:43404110-43404129 None:intergenic 5.0%
!! AAAAATAAATAAATCAAAAA+AGG + chr3_1:43409683-43409702 None:intergenic 5.0%
!!! TTTGATTTATTTATTTTTTA+TGG - chr3_1:43409685-43409704 Msa0358470:five_prime_UTR 5.0%
!! CCCTCTGAGATCTTGAAAGG+TGG + chr3_1:43404186-43404205 None:intergenic 50.0%
!! GTCATCACTGGTTCTGATGC+TGG - chr3_1:43404417-43404436 Msa0358470:three_prime_UTR 50.0%
! AGATCAGAGGTTGAAGGTGC+AGG - chr3_1:43404651-43404670 Msa0358470:three_prime_UTR 50.0%
TGTTGATCTCTTGGGCCACT+AGG - chr3_1:43404835-43404854 Msa0358470:three_prime_UTR 50.0%
AGGAGCTTCAGCAATCCTAG+TGG + chr3_1:43404853-43404872 None:intergenic 50.0%
! AGTTTCCCGCGTGCCTTATT+CGG - chr3_1:43405126-43405145 Msa0358470:three_prime_UTR 50.0%
GCGTGAGAAGCTCATAGGAT+GGG - chr3_1:43405253-43405272 Msa0358470:three_prime_UTR 50.0%
AATTGGACATGTCGCGGCTA+CGG - chr3_1:43405652-43405671 Msa0358470:intron 50.0%
!! CGAGCCTGCTTTTAGTGTTC+TGG - chr3_1:43405724-43405743 Msa0358470:intron 50.0%
CCCTTTGCAATTGCTGTCGA+AGG - chr3_1:43406310-43406329 Msa0358470:intron 50.0%
TGTCGAAGGACCAGCAATGT+GGG - chr3_1:43406324-43406343 Msa0358470:intron 50.0%
GACAGGACAGGAGTTCAACT+TGG + chr3_1:43406672-43406691 None:intergenic 50.0%
TTGAGTAGTCTCGACAGGAC+AGG + chr3_1:43406684-43406703 None:intergenic 50.0%
GCGCGTCATGGATAATCTCT+TGG + chr3_1:43406908-43406927 None:intergenic 50.0%
AGATTATCCATGACGCGCGA+TGG - chr3_1:43406910-43406929 Msa0358470:intron 50.0%
! AACCCAGGTACTTGATAGCC+AGG + chr3_1:43406936-43406955 None:intergenic 50.0%
TGGTAAATGTGCGCAACAGG+TGG - chr3_1:43407136-43407155 Msa0358470:intron 50.0%
GGTAAATGTGCGCAACAGGT+GGG - chr3_1:43407137-43407156 Msa0358470:intron 50.0%
!! TGACGGGCTGAATTGGTGTA+TGG + chr3_1:43407299-43407318 None:intergenic 50.0%
!! AGAGCATTGACGGGCTGAAT+TGG + chr3_1:43407306-43407325 None:intergenic 50.0%
ATTCAGCCCGTCAATGCTCT+TGG - chr3_1:43407306-43407325 Msa0358470:intron 50.0%
CGGGACCTTCTTATACTCTC+AGG - chr3_1:43407347-43407366 Msa0358470:intron 50.0%
! GGAATGTGTTGGGGTGTTTG+TGG - chr3_1:43407692-43407711 Msa0358470:CDS 50.0%
CTAGCAAAGCACATTGGTGG+AGG - chr3_1:43407775-43407794 Msa0358470:CDS 50.0%
CAAAGCACATTGGTGGAGGA+AGG - chr3_1:43407779-43407798 Msa0358470:CDS 50.0%
GCAGTTTCCATGTAGGACCT+TGG - chr3_1:43408163-43408182 Msa0358470:intron 50.0%
GGAAACTTAGGGTCAGGTGA+AGG + chr3_1:43408919-43408938 None:intergenic 50.0%
ACACACCTGAAGTAGTGGCA+AGG - chr3_1:43409379-43409398 Msa0358470:CDS 50.0%
AGACTCCTTGCCACTACTTC+AGG + chr3_1:43409387-43409406 None:intergenic 50.0%
GAAGTAGTGGCAAGGAGTCT+AGG - chr3_1:43409387-43409406 Msa0358470:CDS 50.0%
AGGTGCAGGAACACCTTCAG+AGG - chr3_1:43404665-43404684 Msa0358470:three_prime_UTR 55.0%
ACGCGGGAAACTCATAGCGT+GGG + chr3_1:43405118-43405137 None:intergenic 55.0%
TGCATAGGGCACGTGGGATA+GGG - chr3_1:43405229-43405248 Msa0358470:three_prime_UTR 55.0%
CGCGTGAGAAGCTCATAGGA+TGG - chr3_1:43405252-43405271 Msa0358470:three_prime_UTR 55.0%
CAGATAGACTGGCACAGGGA+AGG + chr3_1:43405774-43405793 None:intergenic 55.0%
CTGTCGAAGGACCAGCAATG+TGG - chr3_1:43406323-43406342 Msa0358470:intron 55.0%
TATCCAGCAGCCCACATTGC+TGG + chr3_1:43406337-43406356 None:intergenic 55.0%
TGGCCTGGCTATCAAGTACC+TGG - chr3_1:43406930-43406949 Msa0358470:intron 55.0%
GGCCTGGCTATCAAGTACCT+GGG - chr3_1:43406931-43406950 Msa0358470:intron 55.0%
GGCTGGTAAATGTGCGCAAC+AGG - chr3_1:43407133-43407152 Msa0358470:intron 55.0%
!! TGCGGCTCCAAGAGCATTGA+CGG + chr3_1:43407316-43407335 None:intergenic 55.0%
GGAGCCGCAATTGCTGTCTT+CGG - chr3_1:43407327-43407346 Msa0358470:intron 55.0%
GAGCCGCAATTGCTGTCTTC+GGG - chr3_1:43407328-43407347 Msa0358470:intron 55.0%
GGTCCCGAAGACAGCAATTG+CGG + chr3_1:43407334-43407353 None:intergenic 55.0%
CTGCTCACCCGTTGTGACTT+AGG + chr3_1:43408288-43408307 None:intergenic 55.0%
AGTCACAACGGGTGAGCAGA+AGG - chr3_1:43408289-43408308 Msa0358470:CDS 55.0%
CACGCGGGAAACTCATAGCG+TGG + chr3_1:43405119-43405138 None:intergenic 60.0%
TCCGAACTGCATAGGGCACG+TGG - chr3_1:43405222-43405241 Msa0358470:three_prime_UTR 60.0%
CCCACGTGCCCTATGCAGTT+CGG + chr3_1:43405226-43405245 None:intergenic 60.0%
CCGAACTGCATAGGGCACGT+GGG - chr3_1:43405223-43405242 Msa0358470:three_prime_UTR 60.0%
CTGCATAGGGCACGTGGGAT+AGG - chr3_1:43405228-43405247 Msa0358470:three_prime_UTR 60.0%
AGGGCGCGTGAGAAGCTCAT+AGG - chr3_1:43405248-43405267 Msa0358470:three_prime_UTR 60.0%
!! GCGGCTCCAAGAGCATTGAC+GGG + chr3_1:43407315-43407334 None:intergenic 60.0%
GGTGTCTGGTGCAGTCGACA+AGG + chr3_1:43408073-43408092 None:intergenic 60.0%
! GGACCAGCAATGTGGGCTGC+TGG - chr3_1:43406331-43406350 Msa0358470:intron 65.0%
ATCCATGACGCGCGATGGCC+TGG - chr3_1:43406915-43406934 Msa0358470:intron 65.0%
AGCCAGGCCATCGCGCGTCA+TGG + chr3_1:43406920-43406939 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 43404038 43409992 43404038 ID=Msa0358470;Name=Msa0358470
chr3_1 mRNA 43404038 43409992 43404038 ID=Msa0358470-mRNA-1;Parent=Msa0358470;Name=Msa0358470-mRNA-1;_AED=0.15;_eAED=0.15;_QI=349|1|1|1|1|1|5|1565|398
chr3_1 exon 43404038 43405614 43404038 ID=Msa0358470-mRNA-1:exon:7736;Parent=Msa0358470-mRNA-1
chr3_1 exon 43406662 43406875 43406662 ID=Msa0358470-mRNA-1:exon:7735;Parent=Msa0358470-mRNA-1
chr3_1 exon 43407635 43407857 43407635 ID=Msa0358470-mRNA-1:exon:7734;Parent=Msa0358470-mRNA-1
chr3_1 exon 43408170 43408395 43408170 ID=Msa0358470-mRNA-1:exon:7733;Parent=Msa0358470-mRNA-1
chr3_1 exon 43409122 43409992 43409122 ID=Msa0358470-mRNA-1:exon:7732;Parent=Msa0358470-mRNA-1
chr3_1 five_prime_UTR 43409644 43409992 43409644 ID=Msa0358470-mRNA-1:five_prime_utr;Parent=Msa0358470-mRNA-1
chr3_1 CDS 43409122 43409643 43409122 ID=Msa0358470-mRNA-1:cds;Parent=Msa0358470-mRNA-1
chr3_1 CDS 43408170 43408395 43408170 ID=Msa0358470-mRNA-1:cds;Parent=Msa0358470-mRNA-1
chr3_1 CDS 43407635 43407857 43407635 ID=Msa0358470-mRNA-1:cds;Parent=Msa0358470-mRNA-1
chr3_1 CDS 43406662 43406875 43406662 ID=Msa0358470-mRNA-1:cds;Parent=Msa0358470-mRNA-1
chr3_1 CDS 43405603 43405614 43405603 ID=Msa0358470-mRNA-1:cds;Parent=Msa0358470-mRNA-1
chr3_1 three_prime_UTR 43404038 43405602 43404038 ID=Msa0358470-mRNA-1:three_prime_utr;Parent=Msa0358470-mRNA-1
Gene Sequence

>Msa0358470

ATGATTTCATCATTGAGACAACCTGGTATTGTCATCACTGGTTCTGATGCTGGTTTAGGGAAAAGACATGCAACCCTAGTTCAACCACAATCATTTTTACCATCTTTGGTTGGTGGAAAATCACAAAGATCTGTTTTTTCATTGAAAAAGCCTCTTCATATTGCATGTGTTGGTGTTGGAAATTTTGGGTCAGTGAAGAATTTTGAATCAGAGAAGAGTTTTGAAAAGGGTGATTTGGTGAAGTGTGAAGCTTATGAAGCTGATAGATCAGAGGTTGAAGGTGCAGGAACACCTTCAGAGGCTGCAAAGAAATTGAAAATTGGGATATATTTTGCAACTTGGTGGGCTTTGAATGTTGTGTTTAATATTTATAACAAGAAGGTTTTGAATGCTTACCCTTACCCTTGGCTTACATCAACTCTCTCACTTGCTTGTGGCTCTCTTATGATGTTGATCTCTTGGGCCACTAGGATTGCTGAAGCTCCTAAGACTGATCTTGAATTTTGGAAGACTTTGTTCCCTGTTGCTGTTGCACACACAATTGGACATGTCGCGGCTACGGTTAGTATGTCCAAAGTTGCTGTATCGTTTACACATATCATCAAGAGTGGCGAGCCTGCTTTTAGTGTTCTGGTTTCGAGATTTATCTTGGGTGAAACCTTCCCTGTGCCAGTCTATCTGTCTTTAGTTCCAATCATTGGTGGATGTGCACTTGCTGCTGTGACTGAGCTCAATTTCAATATGATTGGTTTTATGGGGGCTATGATATCAAATCTGGCATTTGTGTTCCGCAACATCTTCTCGAAAAAGGGGATGAAGGGAAAGTCTGTTAGTGGAATGAATTACTATGCTTGTTTATCTATTTTGTCCCTTGCAATTCTCACACCCTTTGCAATTGCTGTCGAAGGACCAGCAATGTGGGCTGCTGGATATAAAACAGCTCTCGCTGAAATTGGACCTCAATTCTTATGGTGGGTAGCTGCTCAGAGTATATTCTATCATCTATACAATCAGGTGTCTTACATGTCGTTGGATGAGATCTCTCCCTTAACATTTAGCATTGGAAACACCATGAAACGTATATCTGTCATAGTATCTTCAATTATCATCTTCCATACACCAATTCAGCCCGTCAATGCTCTTGGAGCCGCAATTGCTGTCTTCGGGACCTTCTTATACTCTCAGGCAAAACAATAG

Protein sequence

>Msa0358470

MISSLRQPGIVITGSDAGLGKRHATLVQPQSFLPSLVGGKSQRSVFSLKKPLHIACVGVGNFGSVKNFESEKSFEKGDLVKCEAYEADRSEVEGAGTPSEAAKKLKIGIYFATWWALNVVFNIYNKKVLNAYPYPWLTSTLSLACGSLMMLISWATRIAEAPKTDLEFWKTLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFILGETFPVPVYLSLVPIIGGCALAAVTELNFNMIGFMGAMISNLAFVFRNIFSKKGMKGKSVSGMNYYACLSILSLAILTPFAIAVEGPAMWAAGYKTALAEIGPQFLWWVAAQSIFYHLYNQVSYMSLDEISPLTFSIGNTMKRISVIVSSIIIFHTPIQPVNALGAAIAVFGTFLYSQAKQ*