AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0974750

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0974750 MtrunA17_Chr6g0453471 96.657 359 8 3 1 357 1 357 0.0 701
Msa0974750 MtrunA17_Chr7g0217741 60.322 373 68 10 1 357 1 309 4.24e-135 387
Msa0974750 MtrunA17_Chr4g0042671 47.573 412 141 8 1 350 1 399 1.16e-105 316
Msa0974750 MtrunA17_Chr3g0115821 77.444 133 30 0 1 133 1 133 4.56e-78 243
Msa0974750 MtrunA17_Chr8g0349261 65.714 175 52 4 1 171 1 171 1.46e-76 238
Msa0974750 MtrunA17_Chr4g0039971 56.500 200 83 2 1 199 2 198 1.70e-74 234
Msa0974750 MtrunA17_Chr2g0281071 76.154 130 30 1 1 129 1 130 4.40e-74 233
Msa0974750 MtrunA17_Chr4g0048511 73.188 138 36 1 1 137 1 138 5.24e-74 233
Msa0974750 MtrunA17_Chr2g0323411 72.263 137 38 0 1 137 1 137 7.29e-72 226
Msa0974750 MtrunA17_Chr5g0410961 65.132 152 46 1 1 152 1 145 8.47e-70 222
Msa0974750 MtrunA17_Chr5g0395281 51.643 213 82 3 1 213 1 192 4.69e-69 219
Msa0974750 MtrunA17_Chr1g0203411 60.819 171 59 2 1 171 1 163 1.26e-68 217
Msa0974750 MtrunA17_Chr5g0417821 61.935 155 52 1 10 164 5 152 7.82e-67 212
Msa0974750 MtrunA17_Chr3g0110351 68.613 137 43 0 1 137 1 137 5.41e-66 211
Msa0974750 MtrunA17_Chr5g0434571 55.330 197 78 3 1 194 37 226 6.66e-66 212
Msa0974750 MtrunA17_Chr4g0057031 69.231 130 40 0 1 130 1 130 6.38e-65 207
Msa0974750 MtrunA17_Chr4g0037141 55.215 163 66 1 1 163 1 156 1.60e-62 201
Msa0974750 MtrunA17_Chr6g0452271 54.438 169 72 1 1 164 1 169 3.87e-62 202
Msa0974750 MtrunA17_Chr7g0217221 50.732 205 87 5 1 205 1 191 6.79e-62 199
Msa0974750 MtrunA17_Chr3g0103281 59.211 152 62 0 1 152 1 152 1.16e-61 200
Msa0974750 MtrunA17_Chr1g0193371 68.182 132 42 0 1 132 1 132 1.53e-61 201
Msa0974750 MtrunA17_Chr1g0193801 67.969 128 41 0 1 128 1 128 4.48e-61 201
Msa0974750 MtrunA17_Chr7g0228891 67.969 128 41 0 1 128 1 128 5.95e-61 197
Msa0974750 MtrunA17_Chr3g0131121 58.278 151 63 0 1 151 1 151 1.73e-60 196
Msa0974750 MtrunA17_Chr7g0270891 56.863 153 66 0 1 153 1 153 5.80e-60 197
Msa0974750 MtrunA17_Chr4g0060721 52.941 170 64 3 1 169 2 156 1.20e-59 195
Msa0974750 MtrunA17_Chr7g0254411 61.745 149 52 2 1 147 1 146 1.31e-59 195
Msa0974750 MtrunA17_Chr4g0058631 53.107 177 79 1 1 177 1 173 2.48e-59 195
Msa0974750 MtrunA17_Chr3g0092401 68.067 119 38 0 1 119 2 120 4.80e-59 193
Msa0974750 MtrunA17_Chr7g0274581 65.254 118 41 0 1 118 1 118 8.29e-59 189
Msa0974750 MtrunA17_Chr1g0187761 70.690 116 34 0 1 116 1 116 8.38e-59 191
Msa0974750 MtrunA17_Chr1g0167661 73.276 116 31 0 1 116 1 116 2.59e-58 189
Msa0974750 MtrunA17_Chr3g0121241 66.935 124 41 0 5 128 35 158 4.84e-58 190
Msa0974750 MtrunA17_Chr8g0385321 63.281 128 47 0 1 128 1 128 5.42e-58 190
Msa0974750 MtrunA17_Chr5g0435101 64.800 125 44 0 3 127 2 126 7.25e-58 187
Msa0974750 MtrunA17_Chr1g0167691 71.552 116 33 0 1 116 1 116 7.56e-58 188
Msa0974750 MtrunA17_Chr7g0271241 69.531 128 39 0 1 128 1 128 1.93e-57 191
Msa0974750 MtrunA17_Chr4g0042611 90.909 88 8 0 1 88 1 88 2.85e-57 181
Msa0974750 MtrunA17_Chr4g0068061 68.966 116 36 0 1 116 1 116 4.81e-57 189
Msa0974750 MtrunA17_Chr7g0261281 68.644 118 37 0 1 118 1 118 7.03e-57 186
Msa0974750 MtrunA17_Chr2g0309911 62.121 132 45 1 6 137 5 131 2.03e-56 186
Msa0974750 MtrunA17_Chr3g0117091 65.625 128 44 0 1 128 1 128 2.16e-56 187
Msa0974750 MtrunA17_Chr7g0247131 69.048 126 37 1 44 169 10 133 8.25e-56 183
Msa0974750 MtrunA17_Chr1g0211161 55.280 161 70 1 3 161 4 164 1.23e-55 181
Msa0974750 MtrunA17_Chr6g0453211 70.270 111 33 0 1 111 1 111 1.87e-55 184
Msa0974750 MtrunA17_Chr2g0311221 67.273 110 36 0 2 111 4 113 2.52e-55 184
Msa0974750 MtrunA17_Chr8g0346561 66.949 118 39 0 1 118 1 118 3.05e-55 183
Msa0974750 MtrunA17_Chr7g0275911 67.241 116 38 0 1 116 1 116 4.15e-55 181
Msa0974750 MtrunA17_Chr7g0264641 57.823 147 60 2 1 146 1 146 1.21e-53 177
Msa0974750 MtrunA17_Chr2g0323351 66.949 118 39 0 1 118 1 118 1.47e-53 177
Msa0974750 MtrunA17_Chr1g0194951 62.016 129 49 0 1 129 1 129 2.14e-53 180
Msa0974750 MtrunA17_Chr4g0070611 47.449 196 93 2 1 196 1 186 1.37e-52 176
Msa0974750 MtrunA17_Chr8g0387421 61.864 118 45 0 1 118 1 118 1.62e-52 176
Msa0974750 MtrunA17_Chr4g0028311 60.769 130 50 1 1 129 1 130 3.13e-52 176
Msa0974750 MtrunA17_Chr8g0342521 60.163 123 49 0 1 123 1 123 1.07e-51 175
Msa0974750 MtrunA17_Chr2g0330041 55.000 140 56 1 1 133 1 140 1.16e-51 176
Msa0974750 MtrunA17_Chr4g0070641 66.387 119 40 0 1 119 1 119 2.37e-51 168
Msa0974750 MtrunA17_Chr8g0342541 59.350 123 50 0 1 123 1 123 4.04e-51 173
Msa0974750 MtrunA17_Chr1g0152011 64.957 117 40 1 1 116 1 117 6.68e-51 172
Msa0974750 MtrunA17_Chr1g0151941 55.797 138 59 2 1 137 1 137 1.04e-50 169
Msa0974750 MtrunA17_Chr5g0400821 64.957 117 40 1 1 116 1 117 1.06e-50 171
Msa0974750 MtrunA17_Chr4g0044421 62.400 125 46 1 3 126 2 126 2.71e-50 166
Msa0974750 MtrunA17_Chr3g0135311 64.103 117 41 1 1 116 1 117 3.81e-50 171
Msa0974750 MtrunA17_Chr5g0397231 63.636 110 40 0 1 110 1 110 6.55e-50 170
Msa0974750 MtrunA17_Chr2g0327351 58.108 148 59 2 1 147 1 146 1.22e-49 169
Msa0974750 MtrunA17_Chr4g0022931 63.248 117 42 1 1 116 1 117 1.63e-49 167
Msa0974750 MtrunA17_Chr4g0022901 62.931 116 42 1 1 115 1 116 1.56e-48 164
Msa0974750 MtrunA17_Chr4g0022911 61.207 116 44 1 1 115 1 116 1.58e-48 165
Msa0974750 MtrunA17_Chr1g0203441 64.706 119 41 1 1 118 1 119 1.66e-48 164
Msa0974750 MtrunA17_Chr7g0269831 66.379 116 39 0 1 116 1 116 2.44e-48 166
Msa0974750 MtrunA17_Chr4g0022881 53.472 144 63 2 1 141 1 143 2.41e-47 160
Msa0974750 MtrunA17_Chr4g0032401 63.964 111 40 0 12 122 17 127 4.07e-47 162
Msa0974750 MtrunA17_Chr4g0054391 63.636 110 39 1 1 109 1 110 5.99e-47 161
Msa0974750 MtrunA17_Chr8g0342481 58.475 118 48 1 1 117 1 118 6.76e-46 161
Msa0974750 MtrunA17_Chr2g0328771 62.963 108 40 0 12 119 20 127 7.19e-46 159
Msa0974750 MtrunA17_Chr4g0072751 63.063 111 40 1 1 110 1 111 9.35e-46 159
Msa0974750 MtrunA17_Chr3g0088461 64.815 108 38 0 9 116 19 126 6.38e-45 157
Msa0974750 MtrunA17_Chr4g0022891 58.407 113 47 0 1 113 1 113 2.64e-43 150
Msa0974750 MtrunA17_Chr6g0470971 60.909 110 43 0 9 118 11 120 2.21e-42 149
Msa0974750 MtrunA17_Chr6g0487491 54.762 126 48 2 1 117 1 126 2.62e-42 148
Msa0974750 MtrunA17_Chr1g0209661 57.658 111 47 0 12 122 27 137 2.92e-41 147
Msa0974750 MtrunA17_Chr1g0194291 54.762 126 56 1 8 133 17 141 4.94e-41 145
Msa0974750 MtrunA17_Chr2g0294811 67.391 92 30 0 1 92 1 92 9.77e-41 139
Msa0974750 MtrunA17_Chr1g0186061 61.165 103 40 0 13 115 21 123 1.04e-40 144
Msa0974750 MtrunA17_Chr3g0080861 58.036 112 46 1 10 121 35 145 1.80e-40 149
Msa0974750 MtrunA17_Chr4g0055981 58.120 117 49 0 9 125 52 168 1.99e-40 142
Msa0974750 MtrunA17_Chr7g0228231 58.879 107 44 0 12 118 14 120 2.74e-40 141
Msa0974750 MtrunA17_Chr1g0168661 61.165 103 40 0 13 115 22 124 3.23e-40 142
Msa0974750 MtrunA17_Chr8g0354661 59.434 106 43 0 10 115 35 140 4.91e-40 148
Msa0974750 MtrunA17_Chr6g0450101 52.893 121 55 1 1 119 1 121 1.22e-39 139
Msa0974750 MtrunA17_Chr8g0343831 58.475 118 45 1 1 118 1 114 7.89e-39 139
Msa0974750 MtrunA17_Chr1g0194301 53.043 115 54 0 8 122 29 143 8.92e-39 139
Msa0974750 MtrunA17_Chr3g0099131 58.654 104 43 0 12 115 41 144 1.12e-38 144
Msa0974750 MtrunA17_Chr2g0322521 58.879 107 44 0 9 115 26 132 1.67e-38 141
Msa0974750 MtrunA17_Chr5g0434911 54.054 111 51 0 7 117 16 126 2.02e-37 135
Msa0974750 MtrunA17_Chr7g0240821 56.604 106 46 0 17 122 6 111 2.34e-37 134
Msa0974750 MtrunA17_Chr5g0434931 55.140 107 48 0 11 117 34 140 2.73e-37 135
Msa0974750 MtrunA17_Chr7g0220341 57.273 110 45 1 10 117 23 132 3.26e-37 135
Msa0974750 MtrunA17_Chr2g0323321 62.245 98 36 1 1 98 1 97 4.31e-37 129
Msa0974750 MtrunA17_Chr8g0342511 62.069 87 33 0 1 87 1 87 9.22e-37 128
Msa0974750 MtrunA17_Chr1g0154031 54.808 104 47 0 12 115 76 179 1.29e-36 137
Msa0974750 MtrunA17_Chr1g0180391 55.238 105 47 0 12 116 19 123 1.54e-36 132
Msa0974750 MtrunA17_Chr5g0395221 65.909 88 30 0 1 88 1 88 3.37e-36 126
Msa0974750 MtrunA17_Chr2g0293911 52.381 126 59 1 8 133 20 144 5.77e-36 133
Msa0974750 MtrunA17_Chr8g0342531 49.138 116 54 1 1 111 1 116 8.51e-36 128
Msa0974750 MtrunA17_Chr4g0068921 53.913 115 53 0 8 122 20 134 2.09e-35 128
Msa0974750 MtrunA17_Chr7g0228991 55.140 107 48 0 11 117 28 134 2.50e-35 130
Msa0974750 MtrunA17_Chr5g0434831 55.660 106 47 0 11 116 6 111 6.40e-35 126
Msa0974750 MtrunA17_Chr4g0042621 75.309 81 20 0 89 169 15 95 7.00e-35 130
Msa0974750 MtrunA17_Chr1g0192411 35.814 215 116 5 8 210 8 212 9.13e-35 131
Msa0974750 MtrunA17_Chr8g0360111 56.863 102 44 0 11 112 24 125 1.19e-34 128
Msa0974750 MtrunA17_Chr2g0327821 51.923 104 50 0 12 115 6 109 1.15e-33 124
Msa0974750 MtrunA17_Chr5g0434841 53.774 106 49 0 11 116 19 124 1.59e-33 126
Msa0974750 MtrunA17_Chr4g0030881 51.818 110 46 1 13 115 8 117 2.51e-33 124
Msa0974750 MtrunA17_Chr5g0440781 46.032 126 66 2 13 137 13 137 2.81e-33 122
Msa0974750 MtrunA17_Chr8g0342461 56.667 90 38 1 1 89 1 90 7.50e-33 119
Msa0974750 MtrunA17_Chr5g0441141 46.032 126 66 2 13 137 13 137 1.24e-32 123
Msa0974750 MtrunA17_Chr5g0440761 46.032 126 66 2 13 137 13 137 1.37e-32 122
Msa0974750 MtrunA17_Chr8g0342471 56.667 90 38 1 1 89 1 90 2.46e-32 118
Msa0974750 MtrunA17_Chr8g0334881 46.018 113 59 2 8 119 6 117 6.54e-31 119
Msa0974750 MtrunA17_Chr4g0013361 49.038 104 52 1 12 114 10 113 1.72e-30 117
Msa0974750 MtrunA17_Chr3g0099141 54.023 87 40 0 8 94 36 122 1.78e-30 113
Msa0974750 MtrunA17_Chr5g0441131 46.552 116 60 2 10 124 7 121 3.90e-30 114
Msa0974750 MtrunA17_Chr5g0401731 47.706 109 56 1 14 122 15 122 5.11e-30 117
Msa0974750 MtrunA17_Chr3g0093811 58.824 85 35 0 44 128 14 98 7.77e-29 112
Msa0974750 MtrunA17_Chr6g0454921 45.946 111 59 1 14 124 15 124 1.94e-28 110
Msa0974750 MtrunA17_Chr3g0133601 49.074 108 54 1 8 115 31 137 1.78e-27 107
Msa0974750 MtrunA17_Chr4g0053431 38.217 157 95 2 14 169 5 160 1.93e-27 108
Msa0974750 MtrunA17_Chr4g0008551 47.788 113 54 2 14 126 38 145 2.94e-27 110
Msa0974750 MtrunA17_Chr7g0238631 42.969 128 71 2 12 138 111 237 5.49e-26 108
Msa0974750 MtrunA17_Chr7g0229131 50.526 95 46 1 44 138 4 97 1.63e-24 98.6
Msa0974750 MtrunA17_Chr5g0429661 44.231 104 57 1 12 115 120 222 8.81e-24 100
Msa0974750 MtrunA17_Chr7g0229101 62.857 70 26 0 44 113 4 73 1.88e-23 96.7
Msa0974750 MtrunA17_Chr6g0480581 38.129 139 77 3 14 148 4 137 1.89e-23 97.4
Msa0974750 MtrunA17_Chr5g0425591 49.412 85 42 1 10 93 7 91 3.23e-23 92.4
Msa0974750 MtrunA17_Chr6g0453751 48.913 92 38 2 11 93 19 110 1.03e-22 92.4
Msa0974750 MtrunA17_Chr3g0117511 41.818 110 63 1 9 118 178 286 6.57e-22 96.3
Msa0974750 MtrunA17_Chr4g0058991 41.818 110 63 1 9 118 204 312 6.78e-22 96.3
Msa0974750 MtrunA17_Chr5g0434901 60.294 68 27 0 46 113 7 74 2.57e-21 88.2
Msa0974750 MtrunA17_Chr3g0139671 40.952 105 61 1 12 116 83 186 3.66e-21 95.1
Msa0974750 MtrunA17_Chr3g0139671 33.962 106 68 2 14 118 33 137 3.39e-12 67.8
Msa0974750 MtrunA17_Chr6g0460661 40.517 116 67 2 14 129 16 129 5.32e-21 88.6
Msa0974750 MtrunA17_Chr5g0437321 42.857 105 56 2 8 112 16 116 2.21e-20 90.1
Msa0974750 MtrunA17_Chr1g0157731 40.000 105 62 1 12 116 89 192 2.36e-20 92.8
Msa0974750 MtrunA17_Chr1g0157731 32.075 106 70 2 14 118 39 143 1.57e-11 65.9
Msa0974750 MtrunA17_Chr6g0460671 36.364 132 82 2 14 145 99 228 2.47e-20 90.9
Msa0974750 MtrunA17_Chr4g0042501 41.176 102 59 1 14 115 105 205 2.21e-19 89.0
Msa0974750 MtrunA17_Chr5g0417621 39.806 103 61 1 14 116 134 235 2.65e-19 88.6
Msa0974750 MtrunA17_Chr3g0125801 40.367 109 62 2 8 115 10 116 3.82e-19 86.7
Msa0974750 MtrunA17_Chr7g0228531 38.532 109 65 2 10 118 216 322 1.01e-18 87.0
Msa0974750 MtrunA17_Chr5g0395231 60.714 56 22 0 78 133 5 60 1.27e-18 84.3
Msa0974750 MtrunA17_Chr7g0254261 40.000 115 63 2 1 115 81 189 6.61e-18 84.0
Msa0974750 MtrunA17_Chr5g0397841 41.837 98 56 1 12 109 108 204 1.25e-17 84.0
Msa0974750 MtrunA17_Chr7g0247141 65.957 47 15 1 1 46 1 47 4.98e-17 74.7
Msa0974750 MtrunA17_Chr7g0228401 43.023 86 48 1 25 110 290 374 5.08e-16 79.3
Msa0974750 MtrunA17_Chr7g0228481 36.634 101 62 2 10 110 216 314 8.14e-16 78.2
Msa0974750 MtrunA17_Chr1g0177901 41.860 86 49 1 25 110 5 89 1.74e-15 74.7
Msa0974750 MtrunA17_Chr7g0238651 36.667 120 71 3 17 132 10 128 4.34e-15 75.5
Msa0974750 MtrunA17_Chr1g0193901 53.448 58 26 1 12 68 11 68 4.46e-15 70.9
Msa0974750 MtrunA17_Chr1g0193891 53.448 58 26 1 12 68 11 68 4.46e-15 70.9
Msa0974750 MtrunA17_Chr1g0193871 53.448 58 26 1 12 68 11 68 4.46e-15 70.9
Msa0974750 MtrunA17_Chr1g0193881 53.448 58 26 1 12 68 11 68 4.46e-15 70.9
Msa0974750 MtrunA17_Chr5g0416341 39.394 99 59 1 17 115 29 126 5.16e-15 75.9
Msa0974750 MtrunA17_Chr7g0233061 35.652 115 53 2 14 119 180 282 1.91e-14 73.6
Msa0974750 MtrunA17_Chr8g0362231 36.364 99 62 1 17 115 25 122 2.91e-13 70.5
Msa0974750 MtrunA17_Chr3g0145551 72.973 37 10 0 92 128 2 38 2.87e-12 62.0
Msa0974750 MtrunA17_Chr5g0434871 55.814 43 19 0 74 116 2 44 6.10e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0974750 AT5G15310.1 55.556 378 95 8 1 357 1 326 9.33e-130 374
Msa0974750 AT5G15310.2 57.542 358 108 9 1 357 1 315 5.10e-125 362
Msa0974750 AT5G15310.4 88.304 171 18 1 1 171 1 169 7.23e-108 316
Msa0974750 AT3G61250.1 67.630 173 52 1 1 173 1 169 9.23e-83 254
Msa0974750 AT1G34670.1 78.519 135 29 0 1 135 1 135 2.99e-78 244
Msa0974750 AT3G02940.2 77.444 133 30 0 1 133 1 133 1.83e-77 241
Msa0974750 AT3G02940.1 77.444 133 30 0 1 133 1 133 3.79e-77 240
Msa0974750 AT3G02940.3 77.444 133 30 0 1 133 1 133 3.79e-77 240
Msa0974750 AT4G21440.1 60.109 183 68 1 1 178 1 183 8.92e-76 238
Msa0974750 AT4G05100.1 77.692 130 28 1 1 129 1 130 7.26e-75 234
Msa0974750 AT5G16770.4 75.940 133 32 0 1 133 1 133 2.56e-74 233
Msa0974750 AT5G16770.3 75.940 133 32 0 1 133 1 133 2.56e-74 233
Msa0974750 AT5G16770.1 75.940 133 32 0 1 133 1 133 6.94e-74 232
Msa0974750 AT5G16770.2 75.940 133 32 0 1 133 1 133 6.94e-74 232
Msa0974750 AT4G28110.1 64.417 163 58 0 1 163 1 163 1.45e-72 227
Msa0974750 AT5G10280.1 70.677 133 39 0 1 133 1 133 1.44e-70 224
Msa0974750 AT5G65230.1 71.642 134 38 0 1 134 1 134 1.54e-70 223
Msa0974750 AT5G60890.1 73.077 130 35 0 1 130 1 130 9.18e-69 218
Msa0974750 AT5G54230.1 72.263 137 38 0 1 137 1 137 1.08e-68 218
Msa0974750 AT4G17785.2 72.388 134 36 1 1 133 1 134 1.10e-68 219
Msa0974750 AT4G17785.1 72.388 134 36 1 1 133 1 134 1.77e-68 219
Msa0974750 AT5G61420.2 72.656 128 35 0 1 128 1 128 1.61e-67 217
Msa0974750 AT5G07690.1 73.438 128 34 0 1 128 1 128 2.76e-67 215
Msa0974750 AT5G16600.1 67.361 144 47 0 1 144 1 144 6.58e-67 214
Msa0974750 AT1G18570.1 74.219 128 32 1 1 127 1 128 1.48e-65 211
Msa0974750 AT4G34990.1 61.039 154 60 0 1 154 1 154 1.86e-65 209
Msa0974750 AT4G22680.1 70.769 130 38 0 1 130 1 130 2.39e-65 208
Msa0974750 AT5G07700.1 71.875 128 36 0 1 128 1 128 2.72e-65 210
Msa0974750 AT5G07700.2 71.875 128 36 0 1 128 1 128 2.72e-65 210
Msa0974750 AT4G12350.1 65.068 146 51 0 1 146 1 146 4.06e-65 208
Msa0974750 AT1G66230.1 71.094 128 37 0 1 128 1 128 9.29e-65 207
Msa0974750 AT1G74080.1 67.626 139 45 0 1 139 1 139 1.25e-64 208
Msa0974750 AT2G16720.1 56.774 155 67 0 1 155 1 155 9.51e-63 201
Msa0974750 AT3G47600.1 54.971 171 74 2 1 169 1 170 1.91e-62 203
Msa0974750 AT2G31180.1 74.576 118 30 0 1 118 1 118 2.78e-62 199
Msa0974750 AT3G23250.1 60.927 151 52 2 1 144 1 151 3.25e-62 201
Msa0974750 AT5G62470.2 55.621 169 69 3 1 169 1 163 5.01e-62 202
Msa0974750 AT1G22640.1 63.504 137 50 0 1 137 1 137 1.39e-61 198
Msa0974750 AT5G26660.1 69.531 128 39 0 1 128 1 128 1.75e-61 201
Msa0974750 AT5G56110.1 58.553 152 63 0 1 152 1 152 2.91e-61 199
Msa0974750 AT4G09460.1 64.234 137 49 0 1 137 1 137 5.50e-61 196
Msa0974750 AT4G38620.1 64.844 128 45 0 1 128 1 128 1.34e-60 196
Msa0974750 AT1G08810.1 51.562 192 81 3 1 181 1 191 2.09e-60 196
Msa0974750 AT5G62470.1 55.621 169 68 4 1 169 1 162 3.48e-60 197
Msa0974750 AT1G57560.1 65.625 128 44 0 1 128 1 128 6.97e-60 196
Msa0974750 AT1G35515.1 66.667 126 42 0 1 126 1 126 1.17e-59 191
Msa0974750 AT1G57560.2 65.625 128 44 0 1 128 1 128 1.22e-59 194
Msa0974750 AT5G14340.1 59.441 143 58 0 1 143 13 155 1.50e-59 193
Msa0974750 AT5G15310.3 43.729 295 93 8 84 357 5 247 1.73e-59 192
Msa0974750 AT4G01680.3 68.504 127 40 0 1 127 1 127 2.03e-59 192
Msa0974750 AT1G06180.1 74.138 116 30 0 1 116 1 116 3.20e-59 192
Msa0974750 AT1G74650.1 68.908 119 37 0 1 119 1 119 3.54e-59 194
Msa0974750 AT4G01680.1 68.504 127 40 0 1 127 1 127 4.12e-59 194
Msa0974750 AT1G09540.1 61.224 147 56 1 1 147 1 146 5.50e-59 195
Msa0974750 AT1G18710.1 67.188 128 42 0 1 128 1 128 5.56e-59 192
Msa0974750 AT1G74430.1 65.185 135 47 0 1 135 1 135 6.19e-59 192
Msa0974750 AT3G28910.1 56.805 169 70 2 1 169 1 166 8.23e-59 193
Msa0974750 AT3G13540.1 64.000 125 45 0 4 128 15 139 2.27e-58 189
Msa0974750 AT5G62320.1 62.406 133 43 1 2 127 3 135 7.15e-57 186
Msa0974750 AT4G01680.2 62.590 139 40 1 1 127 1 139 1.41e-55 186
Msa0974750 AT3G28470.1 58.333 168 60 3 1 158 1 168 2.60e-55 184
Msa0974750 AT5G49330.1 67.241 116 38 0 1 116 1 116 3.76e-55 184
Msa0974750 AT1G56160.1 67.241 116 38 0 2 117 4 119 4.98e-55 182
Msa0974750 AT1G79180.1 64.957 117 41 0 2 118 4 120 6.22e-55 182
Msa0974750 AT1G16490.1 65.517 116 40 0 2 117 4 119 1.60e-54 181
Msa0974750 AT3G12720.1 61.983 121 46 0 6 126 16 136 7.71e-54 180
Msa0974750 AT1G63910.1 55.797 138 61 0 1 138 1 138 1.07e-52 179
Msa0974750 AT2G47460.1 65.517 116 40 0 1 116 1 116 2.01e-52 178
Msa0974750 AT3G62610.1 65.517 116 40 0 1 116 1 116 2.03e-52 177
Msa0974750 AT3G13890.2 62.931 116 43 0 1 116 1 116 9.23e-52 176
Msa0974750 AT5G23000.1 64.103 117 41 1 1 116 1 117 2.18e-51 174
Msa0974750 AT2G36890.1 61.417 127 48 1 1 126 1 127 6.95e-51 172
Msa0974750 AT2G36890.2 61.417 127 48 1 1 126 42 168 1.19e-50 172
Msa0974750 AT3G49690.1 65.812 117 39 1 1 116 1 117 2.55e-50 171
Msa0974750 AT3G12820.1 62.931 116 43 0 3 118 5 120 1.31e-49 167
Msa0974750 AT5G57620.1 64.103 117 41 1 1 116 1 117 1.35e-49 169
Msa0974750 AT5G65790.1 64.957 117 40 1 1 116 1 117 4.15e-49 169
Msa0974750 AT3G13890.1 58.400 125 43 1 1 116 1 125 1.14e-48 168
Msa0974750 AT1G79180.2 50.667 150 41 1 2 118 4 153 3.38e-48 166
Msa0974750 AT4G37780.1 59.829 117 46 1 1 116 1 117 5.05e-48 164
Msa0974750 AT5G12870.1 64.815 108 38 0 12 119 18 125 3.24e-46 159
Msa0974750 AT5G40330.1 43.931 173 83 2 13 179 13 177 2.16e-44 152
Msa0974750 AT3G08500.1 63.303 109 40 0 8 116 26 134 4.65e-44 155
Msa0974750 AT5G14750.1 62.500 104 39 0 13 116 17 120 1.95e-43 149
Msa0974750 AT1G48000.1 58.407 113 47 0 10 122 30 142 8.65e-42 146
Msa0974750 AT5G40350.1 58.716 109 45 0 12 120 17 125 1.44e-41 145
Msa0974750 AT5G35550.1 64.486 107 38 0 12 118 14 120 1.45e-41 146
Msa0974750 AT5G52600.1 54.264 129 50 1 9 128 9 137 2.09e-41 144
Msa0974750 AT2G26960.1 50.758 132 64 1 9 140 17 147 5.23e-41 149
Msa0974750 AT4G25560.1 60.377 106 42 0 13 118 11 116 8.13e-41 145
Msa0974750 AT5G52260.1 63.208 106 39 0 13 118 13 118 9.30e-41 144
Msa0974750 AT3G27920.1 60.000 105 42 0 13 117 15 119 1.11e-40 143
Msa0974750 AT5G55020.1 60.714 112 43 1 10 121 24 134 1.54e-40 149
Msa0974750 AT4G26930.1 57.143 112 47 1 10 121 17 127 2.65e-40 146
Msa0974750 AT2G32460.2 60.000 105 42 0 11 115 5 109 2.99e-40 148
Msa0974750 AT5G06100.1 58.333 108 45 0 8 115 28 135 3.00e-40 147
Msa0974750 AT2G32460.1 60.000 105 42 0 11 115 17 121 3.33e-40 148
Msa0974750 AT3G24310.1 60.952 105 41 0 11 115 17 121 3.72e-40 143
Msa0974750 AT3G11440.2 58.654 104 43 0 12 115 41 144 6.44e-40 147
Msa0974750 AT5G06100.5 58.333 108 45 0 8 115 28 135 8.55e-40 147
Msa0974750 AT5G06100.2 58.333 108 45 0 8 115 28 135 8.55e-40 147
Msa0974750 AT5G06100.3 58.333 108 45 0 8 115 28 135 8.55e-40 147
Msa0974750 AT5G06100.4 58.333 108 45 0 8 115 28 135 8.55e-40 147
Msa0974750 AT3G48920.1 57.143 105 45 0 13 117 19 123 1.13e-39 141
Msa0974750 AT4G13480.1 61.165 103 40 0 13 115 7 109 1.43e-39 141
Msa0974750 AT3G27810.1 55.455 110 49 0 12 121 20 129 1.47e-39 140
Msa0974750 AT3G01530.1 58.095 105 44 0 12 116 25 129 1.59e-39 139
Msa0974750 AT3G30210.1 60.577 104 41 0 11 114 26 129 1.67e-39 141
Msa0974750 AT5G26660.2 73.256 86 23 0 43 128 12 97 1.74e-39 142
Msa0974750 AT3G11440.3 58.654 104 43 0 12 115 41 144 1.91e-39 147
Msa0974750 AT3G11440.4 58.654 104 43 0 12 115 41 144 1.91e-39 147
Msa0974750 AT3G11440.1 58.654 104 43 0 12 115 41 144 1.91e-39 147
Msa0974750 AT1G25340.1 53.913 115 53 0 13 127 19 133 2.51e-38 138
Msa0974750 AT1G66370.1 55.652 115 47 1 1 115 1 111 1.24e-37 135
Msa0974750 AT2G47190.1 52.252 111 53 0 12 122 20 130 1.46e-37 136
Msa0974750 AT3G06490.1 53.659 123 57 0 8 130 15 137 7.05e-37 135
Msa0974750 AT1G68320.1 54.054 111 51 0 12 122 19 129 1.81e-36 134
Msa0974750 AT3G53200.1 56.731 104 45 0 12 115 9 112 8.81e-36 130
Msa0974750 AT3G47600.2 51.181 127 59 2 45 169 39 164 1.57e-34 129
Msa0974750 AT3G46130.1 54.286 105 48 0 11 115 8 112 5.21e-34 126
Msa0974750 AT1G66380.1 60.000 105 42 0 11 115 7 111 5.74e-34 122
Msa0974750 AT5G49620.1 52.174 115 55 0 8 122 22 136 6.94e-34 127
Msa0974750 AT5G59780.3 54.369 103 47 0 13 115 9 111 7.47e-34 125
Msa0974750 AT1G56650.1 52.381 126 52 1 11 128 7 132 1.15e-33 125
Msa0974750 AT1G25340.2 51.304 115 51 1 13 127 19 128 1.15e-33 126
Msa0974750 AT1G25340.3 51.304 115 51 1 13 127 19 128 3.05e-33 125
Msa0974750 AT1G66390.1 58.095 105 44 0 11 115 7 111 6.11e-33 123
Msa0974750 AT3G60460.1 49.541 109 53 2 12 119 11 118 1.60e-31 121
Msa0974750 AT5G49620.2 44.526 137 62 1 8 130 22 158 2.27e-30 118
Msa0974750 AT5G14750.3 64.103 78 25 1 39 116 12 86 1.15e-29 112
Msa0974750 AT3G12820.2 70.423 71 21 0 48 118 2 72 2.55e-29 112
Msa0974750 AT5G35550.2 65.882 85 25 1 45 129 50 130 2.68e-29 114
Msa0974750 AT2G26950.1 39.394 132 79 1 9 140 13 143 4.27e-29 116
Msa0974750 AT5G40350.2 61.842 76 29 0 45 120 5 80 2.78e-28 108
Msa0974750 AT1G18960.1 46.721 122 58 4 14 133 10 126 6.34e-28 111
Msa0974750 AT1G22640.3 59.494 79 32 0 59 137 2 80 2.10e-27 107
Msa0974750 AT4G37260.1 47.664 107 55 1 14 120 13 118 5.73e-27 109
Msa0974750 AT3G53200.2 61.039 77 30 0 39 115 3 79 6.27e-27 106
Msa0974750 AT5G59780.2 63.014 73 27 0 43 115 18 90 9.21e-27 105
Msa0974750 AT3G27810.2 57.143 77 33 0 45 121 4 80 1.17e-26 104
Msa0974750 AT1G71030.1 54.444 90 40 1 38 127 7 95 1.32e-26 105
Msa0974750 AT3G46130.3 63.889 72 26 0 44 115 9 80 1.61e-26 105
Msa0974750 AT3G46130.4 63.014 73 27 0 43 115 18 90 1.89e-26 105
Msa0974750 AT2G23290.1 48.077 104 53 1 14 117 13 115 2.16e-26 107
Msa0974750 AT5G67300.1 46.078 102 54 1 14 115 6 106 7.32e-26 105
Msa0974750 AT3G50060.1 45.192 104 56 1 14 117 6 108 1.66e-25 104
Msa0974750 AT1G71030.2 57.143 77 33 0 51 127 5 81 4.50e-25 100
Msa0974750 AT2G39880.1 47.170 106 47 2 14 115 50 150 3.52e-24 102
Msa0974750 AT3G55730.1 46.226 106 56 1 14 119 56 160 7.31e-24 102
Msa0974750 AT1G17950.1 31.606 193 114 4 14 206 5 179 8.23e-24 99.0
Msa0974750 AT5G02320.1 44.762 105 57 1 12 116 125 228 8.96e-24 102
Msa0974750 AT5G02320.2 44.762 105 57 1 12 116 125 228 8.96e-24 102
Msa0974750 AT3G09230.1 41.176 136 75 2 14 149 55 185 1.01e-23 101
Msa0974750 AT5G02320.3 44.762 105 57 1 12 116 65 168 1.05e-23 102
Msa0974750 AT3G23250.2 53.763 93 36 2 59 144 2 94 1.29e-23 97.8
Msa0974750 AT4G18770.1 42.727 110 62 1 9 118 212 320 4.94e-23 99.8
Msa0974750 AT1G66380.3 66.197 71 24 0 45 115 8 78 5.30e-23 92.8
Msa0974750 AT5G58850.1 42.991 107 60 1 12 118 103 208 5.74e-23 99.8
Msa0974750 AT3G09370.1 45.192 104 56 1 12 115 128 230 6.80e-23 100
Msa0974750 AT3G09370.1 33.019 106 69 2 14 118 78 182 5.37e-11 64.3
Msa0974750 AT3G09370.2 45.192 104 56 1 12 115 133 235 7.35e-23 100
Msa0974750 AT3G09370.2 33.019 106 69 2 14 118 83 187 5.86e-11 63.9
Msa0974750 AT3G27785.1 43.925 107 59 1 9 115 184 289 8.65e-23 99.4
Msa0974750 AT3G09370.3 45.192 104 56 1 12 115 141 243 8.66e-23 99.8
Msa0974750 AT3G09370.3 33.019 106 69 2 14 118 91 195 5.82e-11 64.3
Msa0974750 AT5G40360.1 40.157 127 71 4 8 133 154 276 1.33e-22 97.8
Msa0974750 AT5G11050.1 41.905 105 60 1 14 118 105 208 1.41e-22 98.6
Msa0974750 AT1G66380.2 51.020 98 47 1 11 107 7 104 1.89e-22 91.3
Msa0974750 AT5G11510.3 41.905 105 60 1 12 116 79 182 4.11e-21 95.5
Msa0974750 AT5G11510.1 41.905 105 60 1 12 116 79 182 4.11e-21 95.5
Msa0974750 AT5G11510.4 41.905 105 60 1 12 116 79 182 4.11e-21 95.5
Msa0974750 AT5G11510.5 41.905 105 60 1 12 116 79 182 4.94e-21 95.1
Msa0974750 AT5G11510.2 41.905 105 60 1 12 116 79 182 5.16e-21 95.1
Msa0974750 AT1G69560.1 41.284 109 61 2 9 116 102 208 9.29e-21 92.0
Msa0974750 AT1G69560.2 41.284 109 61 2 9 116 118 224 1.17e-20 92.0
Msa0974750 AT1G73410.1 42.453 106 60 1 10 115 2 106 1.53e-20 89.7
Msa0974750 AT5G14750.4 65.517 58 20 0 59 116 2 59 1.63e-20 87.0
Msa0974750 AT5G14750.2 65.517 58 20 0 59 116 2 59 1.63e-20 87.0
Msa0974750 AT4G32730.1 40.000 105 62 1 12 116 85 188 1.72e-20 93.6
Msa0974750 AT4G32730.1 33.962 106 68 2 14 118 35 139 5.91e-12 67.4
Msa0974750 AT4G32730.5 40.000 105 62 1 12 116 85 188 1.89e-20 93.6
Msa0974750 AT4G32730.5 33.962 106 68 2 14 118 35 139 6.90e-12 67.4
Msa0974750 AT4G32730.4 40.000 105 62 1 12 116 85 188 1.89e-20 93.6
Msa0974750 AT4G32730.4 33.962 106 68 2 14 118 35 139 6.90e-12 67.4
Msa0974750 AT4G32730.3 40.000 105 62 1 12 116 85 188 1.89e-20 93.6
Msa0974750 AT4G32730.3 33.962 106 68 2 14 118 35 139 6.90e-12 67.4
Msa0974750 AT4G32730.2 40.000 105 62 1 12 116 85 188 1.89e-20 93.6
Msa0974750 AT4G32730.2 33.962 106 68 2 14 118 35 139 6.90e-12 67.4
Msa0974750 AT1G73410.2 42.453 106 60 1 10 115 2 106 3.74e-20 87.8
Msa0974750 AT5G61420.1 79.167 48 10 0 81 128 2 49 3.85e-20 89.7
Msa0974750 AT4G33450.1 37.168 113 65 2 3 115 13 119 5.88e-20 88.2
Msa0974750 AT1G26780.2 42.857 105 57 2 12 115 96 198 1.25e-19 89.4
Msa0974750 AT1G26780.1 42.857 105 57 2 12 115 96 198 1.66e-19 87.8
Msa0974750 AT2G25230.1 39.831 118 68 2 9 124 21 137 1.46e-18 84.0
Msa0974750 AT3G29020.1 36.190 105 66 1 14 118 65 168 4.66e-17 79.7
Msa0974750 AT3G29020.2 36.190 105 66 1 14 118 67 170 6.01e-17 80.9
Msa0974750 AT5G17800.1 39.216 102 61 1 14 115 93 193 6.65e-17 80.9
Msa0974750 AT2G02820.3 39.394 99 59 1 17 115 33 130 5.29e-16 78.6
Msa0974750 AT2G02820.1 39.394 99 59 1 17 115 33 130 5.76e-16 79.3
Msa0974750 AT2G02820.2 39.394 99 59 1 17 115 33 130 7.48e-16 79.0
Msa0974750 AT4G28110.2 71.429 42 12 0 88 129 4 45 1.83e-15 74.7
Msa0974750 AT5G39700.1 36.538 104 65 1 15 118 57 159 2.32e-15 73.9
Msa0974750 AT4G00540.2 38.739 111 64 2 12 119 101 210 2.65e-15 77.0
Msa0974750 AT4G00540.1 38.739 111 64 2 12 119 99 208 3.26e-15 77.0
Msa0974750 AT1G14350.2 39.394 99 59 1 17 115 28 125 5.64e-15 76.3
Msa0974750 AT1G14350.1 39.394 99 59 1 17 115 28 125 5.64e-15 76.3
Msa0974750 AT3G28910.2 46.739 92 46 2 78 169 2 90 1.09e-14 73.6
Msa0974750 AT1G74650.3 73.810 42 11 0 78 119 2 43 1.35e-14 73.2
Msa0974750 AT5G14340.2 53.571 56 26 0 88 143 10 65 8.60e-14 69.7
Msa0974750 AT5G40430.1 34.188 117 75 2 4 120 44 158 1.13e-13 70.5
Msa0974750 AT2G37630.1 31.159 138 87 3 17 147 7 143 2.05e-13 71.2
Msa0974750 AT1G22640.2 58.000 50 21 0 88 137 16 65 1.33e-12 66.2
Msa0974750 AT4G25560.2 60.417 48 19 0 71 118 3 50 2.98e-12 65.9
Msa0974750 AT5G59780.1 62.791 43 16 0 73 115 4 46 3.12e-12 64.7
Msa0974750 AT1G74430.2 61.364 44 17 0 85 128 16 59 4.57e-12 65.1
Msa0974750 AT3G46130.2 62.791 43 16 0 73 115 4 46 5.41e-12 64.7

Find 69 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAATTATGTGAACGAATTT+TGG 0.141100 6_4:-8037596 None:intergenic
ATTCAACTTCATGCTCTCTT+AGG 0.167406 6_4:+8036300 Msa0974750:CDS
ACAATTTCATATACATTTCT+AGG 0.172326 6_4:-8038616 None:intergenic
TAGAATTGTGATCATCTTCT+TGG 0.227674 6_4:+8038487 Msa0974750:three_prime_UTR
GTGTTAAACTCACTACAAAA+TGG 0.229498 6_4:+8035780 Msa0974750:exon
ATTTCTCCACTATTCATAAT+TGG 0.239670 6_4:-8037703 None:intergenic
ACTAAGATTTGAAGCAGTTT+TGG 0.252752 6_4:-8037515 None:intergenic
ATAATGAGATAAAGAATTAT+TGG 0.265414 6_4:+8037392 Msa0974750:CDS
AACTTTCCTCTCTTAATATC+TGG 0.287644 6_4:-8036252 None:intergenic
CTTCTTTCATCAAGTGATAA+TGG 0.300165 6_4:+8037487 Msa0974750:CDS
TATATTAACATTTGTTGATC+TGG 0.301608 6_4:+8038242 Msa0974750:three_prime_UTR
ATTATGAATAGTGGAGAAAT+TGG 0.314925 6_4:+8037706 Msa0974750:CDS
TAAGATGGACTAATTATCTT+AGG 0.318250 6_4:+8036229 Msa0974750:CDS
GTAATTTGTGAAAGTGAATC+AGG 0.349030 6_4:+8038637 Msa0974750:three_prime_UTR
ATCATAGTCACTTGAAAGCT+TGG 0.389781 6_4:+8037626 Msa0974750:CDS
TGATCTTCTTCTGGAGTCCA+TGG 0.398939 6_4:-8035844 None:intergenic
TTCATGCTCTCTTAGGGAAC+AGG 0.403403 6_4:+8036307 Msa0974750:CDS
GACAAAGTTGGTTTAAAGAA+AGG 0.409452 6_4:+8035820 Msa0974750:CDS
TTTAGAAGAAAAGAGCTCTA+TGG 0.412531 6_4:+8038665 Msa0974750:three_prime_UTR
TCTTAGTCACATGGCTCAAT+GGG 0.413275 6_4:+8037531 Msa0974750:CDS
AATGGTGGTGATGGTGGAAA+TGG 0.425976 6_4:+8038048 Msa0974750:CDS
TTGAAAGATAAAGTTGAAGT+AGG 0.429625 6_4:-8037667 None:intergenic
GTTGCACCAATTATGAATAG+TGG 0.433389 6_4:+8037697 Msa0974750:CDS
GTGTCTATGATTGAGTTTGT+AGG 0.434040 6_4:+8037796 Msa0974750:CDS
TTCAACTTCATGCTCTCTTA+GGG 0.440645 6_4:+8036301 Msa0974750:CDS
ATCTTAGTCACATGGCTCAA+TGG 0.445039 6_4:+8037530 Msa0974750:CDS
CGTGCTTTGCCAGCTAAAGC+TGG 0.450806 6_4:+8035910 Msa0974750:CDS
TGTTAAACTCACTACAAAAT+GGG 0.453114 6_4:+8035781 Msa0974750:exon
GTCAGCTATAGCAACACATT+TGG 0.463806 6_4:+8037357 Msa0974750:CDS
TGTCTATGATTGAGTTTGTA+GGG 0.466901 6_4:+8037797 Msa0974750:CDS
AGTTCAATTGTGAAAGAAGA+AGG 0.467308 6_4:+8037829 Msa0974750:CDS
ATGAAGATAACAATAACTAC+TGG 0.468008 6_4:+8038088 Msa0974750:CDS
GGAACACACATCTTAAGAAA+AGG 0.470556 6_4:+8037413 Msa0974750:CDS
TTAAAGAAGTACTTAACCTA+TGG 0.471084 6_4:-8035692 None:intergenic
GGTGATGGTGGAAATGGAAG+TGG 0.475445 6_4:+8038054 Msa0974750:CDS
GCATCATTACCAGCTTTAGC+TGG 0.492304 6_4:-8035919 None:intergenic
ATGATCAAGATCAAGATCAA+TGG 0.499871 6_4:+8037857 Msa0974750:CDS
TCATGAGTTGACTATGTCAA+TGG 0.502069 6_4:+8037921 Msa0974750:CDS
AAGAACATGGTCATGGAAGT+TGG 0.505038 6_4:+8035887 Msa0974750:CDS
CAAAACATTGGTGAATCAGA+TGG 0.512301 6_4:-8038141 None:intergenic
AATAGTGGAGAAATTGGAGG+AGG 0.518144 6_4:+8037712 Msa0974750:CDS
ACTAGAAACAATGCACTAAG+TGG 0.534934 6_4:-8038571 None:intergenic
GTAAGAGCTGCAGATTAAGA+TGG 0.536224 6_4:+8036214 Msa0974750:CDS
GACTTGAGTTTGTCAGAGAG+TGG 0.538409 6_4:+8038012 Msa0974750:CDS
GAGAGCATGAAGTTGAATGA+TGG 0.544901 6_4:-8036295 None:intergenic
TCACCATGTTGTGACAAAGT+TGG 0.546765 6_4:+8035808 Msa0974750:CDS
GATGATGTCATTGCTGAAGA+AGG 0.549060 6_4:+8037955 Msa0974750:CDS
ATTAATAATGATGAGAACAA+TGG 0.557396 6_4:+8037769 Msa0974750:CDS
TTGGTTTAAAGAAAGGTCCA+TGG 0.561619 6_4:+8035827 Msa0974750:CDS
TATATTGAAGAACATGGTCA+TGG 0.565958 6_4:+8035880 Msa0974750:CDS
AAACCAACTTTGTCACAACA+TGG 0.572673 6_4:-8035811 None:intergenic
GACTTATTGCAGAATTGTAG+AGG 0.575068 6_4:+8038368 Msa0974750:three_prime_UTR
TAGTGAAAATACGACAAGAC+TGG 0.577997 6_4:-8038284 None:intergenic
ATGATGTCATTGCTGAAGAA+GGG 0.582083 6_4:+8037956 Msa0974750:CDS
GAATCTAACAATGGTGGTGA+TGG 0.584861 6_4:+8038039 Msa0974750:CDS
CAAGATCAAGATCAATGGAA+AGG 0.588024 6_4:+8037862 Msa0974750:CDS
ATGAATAGTGGAGAAATTGG+AGG 0.588583 6_4:+8037709 Msa0974750:CDS
TCTAACAATGGTGGTGATGG+TGG 0.594929 6_4:+8038042 Msa0974750:CDS
CTTAGGCCAGATATTAAGAG+AGG 0.595623 6_4:+8036246 Msa0974750:CDS
CACATCTTATATCAAAACAT+TGG 0.606562 6_4:-8038153 None:intergenic
AAATTAGGGCTTCAAAGATG+TGG 0.614060 6_4:+8036192 Msa0974750:intron
TTGAGTTTGTCAGAGAGTGG+AGG 0.626434 6_4:+8038015 Msa0974750:CDS
GGAGAAAATAATAACAACAA+TGG 0.630403 6_4:+8037733 Msa0974750:CDS
TCAATTGTGAAAGAAGAAGG+TGG 0.631897 6_4:+8037832 Msa0974750:CDS
TGCTTCAAATCTTAGTCACA+TGG 0.636039 6_4:+8037522 Msa0974750:CDS
AAAAGATAAAATAAAACTCG+CGG 0.646140 6_4:-8038324 None:intergenic
TTAGCTTATATTGAAGAACA+TGG 0.677580 6_4:+8035874 Msa0974750:CDS
AGTGGAGGTGAATCTAACAA+TGG 0.688377 6_4:+8038030 Msa0974750:CDS
GGAGGTGAATCTAACAATGG+TGG 0.762552 6_4:+8038033 Msa0974750:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGTTTTTATTTGTAAAATT+AGG + chr6_4:8037332-8037351 Msa0974750:intron 10.0%
!!! AGTTTTATTTTATCTTTTAA+AGG + chr6_4:8038329-8038348 Msa0974750:three_prime_UTR 10.0%
!! CATCTTAATTATTAATTTCT+AGG + chr6_4:8036356-8036375 Msa0974750:intron 15.0%
!! CAAAAAAAAAAAACAACAAA+AGG - chr6_4:8036524-8036543 None:intergenic 15.0%
!!! TTTTATCATTTTGGAATTAA+AGG - chr6_4:8036896-8036915 None:intergenic 15.0%
!!! TTTTTATTTGTAAAATTAGG+TGG + chr6_4:8037335-8037354 Msa0974750:intron 15.0%
!! ATAATGAGATAAAGAATTAT+TGG + chr6_4:8037392-8037411 Msa0974750:CDS 15.0%
!!! CTAAATTTTTTTATACGATT+TGG - chr6_4:8038396-8038415 None:intergenic 15.0%
!!! TTTTTTTTCTATCTTACCAT+AGG + chr6_4:8035676-8035695 Msa0974750:five_prime_UTR 20.0%
!! ACAAAAAATTAGAAAAGCAA+AGG - chr6_4:8035944-8035963 None:intergenic 20.0%
!! GCTTTGATATATTTATATAC+TGG + chr6_4:8035980-8035999 Msa0974750:intron 20.0%
!! TAACATGTTTATAGTGTTTA+AGG + chr6_4:8036096-8036115 Msa0974750:intron 20.0%
!! TTGTTGTGATATTGTAAATT+AGG + chr6_4:8036177-8036196 Msa0974750:intron 20.0%
!! TGTTGTGATATTGTAAATTA+GGG + chr6_4:8036178-8036197 Msa0974750:intron 20.0%
!!! GTGTTTTAAAGAAAATGATA+GGG - chr6_4:8036437-8036456 None:intergenic 20.0%
!!! TGTGTTTTAAAGAAAATGAT+AGG - chr6_4:8036438-8036457 None:intergenic 20.0%
!! ACAAAAGGAAAAAATTATAC+AGG - chr6_4:8036509-8036528 None:intergenic 20.0%
!!! TATAATCATTCATTTTCTGT+TGG + chr6_4:8036646-8036665 Msa0974750:intron 20.0%
!!! ATAATCATTCATTTTCTGTT+GGG + chr6_4:8036647-8036666 Msa0974750:intron 20.0%
!!! TTCTTTTCTTTTGATTGAAT+GGG - chr6_4:8036765-8036784 None:intergenic 20.0%
!!! ATAACTTGAATTATTTGTTG+GGG - chr6_4:8036812-8036831 None:intergenic 20.0%
!! CATAACTTGAATTATTTGTT+GGG - chr6_4:8036813-8036832 None:intergenic 20.0%
!! GAGTAATAAATTTGAGAAAA+TGG - chr6_4:8036843-8036862 None:intergenic 20.0%
!! TCCAAAATGATAAAATTATG+TGG + chr6_4:8036901-8036920 Msa0974750:intron 20.0%
!!! ACCACATAATTTTATCATTT+TGG - chr6_4:8036905-8036924 None:intergenic 20.0%
!! TAAGAAAAGGTTAACAAAAA+TGG + chr6_4:8037426-8037445 Msa0974750:CDS 20.0%
!! AAGAAAAGGTTAACAAAAAT+GGG + chr6_4:8037427-8037446 Msa0974750:CDS 20.0%
!! ATTAATAATGATGAGAACAA+TGG + chr6_4:8037769-8037788 Msa0974750:CDS 20.0%
!!! TATATTAACATTTGTTGATC+TGG + chr6_4:8038242-8038261 Msa0974750:three_prime_UTR 20.0%
!! AAAAGATAAAATAAAACTCG+CGG - chr6_4:8038327-8038346 None:intergenic 20.0%
!! TCGTATAAAAAAATTTAGTG+TGG + chr6_4:8038398-8038417 Msa0974750:three_prime_UTR 20.0%
!! ACAATTTCATATACATTTCT+AGG - chr6_4:8038619-8038638 None:intergenic 20.0%
! GATAGAAAAAAAATGAGAGA+AGG - chr6_4:8035669-8035688 None:intergenic 25.0%
!!! TTAAAGAAGTACTTAACCTA+TGG - chr6_4:8035695-8035714 None:intergenic 25.0%
! TGTTAAACTCACTACAAAAT+GGG + chr6_4:8035781-8035800 Msa0974750:exon 25.0%
! TTAGCTTATATTGAAGAACA+TGG + chr6_4:8035874-8035893 Msa0974750:CDS 25.0%
! TTTATATACTGGTAGAACAT+TGG + chr6_4:8035991-8036010 Msa0974750:intron 25.0%
!!! TAAGATGGACTAATTATCTT+AGG + chr6_4:8036229-8036248 Msa0974750:CDS 25.0%
! ATTAAGATGACAACACAATA+AGG - chr6_4:8036345-8036364 None:intergenic 25.0%
! AAGGAAAAAATTATACAGGT+GGG - chr6_4:8036505-8036524 None:intergenic 25.0%
! AAAGGAAAAAATTATACAGG+TGG - chr6_4:8036506-8036525 None:intergenic 25.0%
! GATGCCTATATTTATATATG+TGG + chr6_4:8036578-8036597 Msa0974750:intron 25.0%
! GTTGCCACATATATAAATAT+AGG - chr6_4:8036585-8036604 None:intergenic 25.0%
!! TAATCATTCATTTTCTGTTG+GGG + chr6_4:8036648-8036667 Msa0974750:intron 25.0%
! AGTAGAATGGAAAAAATTGA+GGG - chr6_4:8036735-8036754 None:intergenic 25.0%
! TAGTAGAATGGAAAAAATTG+AGG - chr6_4:8036736-8036755 None:intergenic 25.0%
!!! GTTCTTTTCTTTTGATTGAA+TGG - chr6_4:8036766-8036785 None:intergenic 25.0%
! GCATAACTTGAATTATTTGT+TGG - chr6_4:8036814-8036833 None:intergenic 25.0%
!!! AGTTGATGAGTTAATATTGT+AGG + chr6_4:8037265-8037284 Msa0974750:intron 25.0%
!! GTTGATGAGTTAATATTGTA+GGG + chr6_4:8037266-8037285 Msa0974750:intron 25.0%
!! TGAATTATGTGAACGAATTT+TGG - chr6_4:8037599-8037618 None:intergenic 25.0%
! TTGAAAGATAAAGTTGAAGT+AGG - chr6_4:8037670-8037689 None:intergenic 25.0%
! ATTTCTCCACTATTCATAAT+TGG - chr6_4:8037706-8037725 None:intergenic 25.0%
!! ATTATGAATAGTGGAGAAAT+TGG + chr6_4:8037706-8037725 Msa0974750:CDS 25.0%
! GGAGAAAATAATAACAACAA+TGG + chr6_4:8037733-8037752 Msa0974750:CDS 25.0%
! ATGAAGATAACAATAACTAC+TGG + chr6_4:8038088-8038107 Msa0974750:CDS 25.0%
! CACATCTTATATCAAAACAT+TGG - chr6_4:8038156-8038175 None:intergenic 25.0%
GTGTTAAACTCACTACAAAA+TGG + chr6_4:8035780-8035799 Msa0974750:exon 30.0%
! GACAAAGTTGGTTTAAAGAA+AGG + chr6_4:8035820-8035839 Msa0974750:CDS 30.0%
! AAGAGTTTTTGATCTTCTTC+TGG - chr6_4:8035856-8035875 None:intergenic 30.0%
TATATTGAAGAACATGGTCA+TGG + chr6_4:8035880-8035899 Msa0974750:CDS 30.0%
TCAGAAAGAAATTGGAAAGT+TGG + chr6_4:8036021-8036040 Msa0974750:intron 30.0%
AACTTTCCTCTCTTAATATC+TGG - chr6_4:8036255-8036274 None:intergenic 30.0%
CAATTGAAGCAAATGAGTTA+AGG - chr6_4:8036402-8036421 None:intergenic 30.0%
CTTAACTCATTTGCTTCAAT+TGG + chr6_4:8036400-8036419 Msa0974750:intron 30.0%
GTAGAATGGAAAAAATTGAG+GGG - chr6_4:8036734-8036753 None:intergenic 30.0%
!! TTTCTTTTGATTGAATGGGT+AGG - chr6_4:8036761-8036780 None:intergenic 30.0%
! TTGAATTATTTGTTGGGGAT+GGG - chr6_4:8036807-8036826 None:intergenic 30.0%
ATTTAACGAGAGAATAAGAG+AGG + chr6_4:8037117-8037136 Msa0974750:intron 30.0%
TTTAACGAGAGAATAAGAGA+GGG + chr6_4:8037118-8037137 Msa0974750:intron 30.0%
!!! TTTTTAGGTTTGTGTGTAAC+CGG - chr6_4:8037460-8037479 None:intergenic 30.0%
!! GAAAGAAGTGCATCATTTTT+AGG - chr6_4:8037475-8037494 None:intergenic 30.0%
CTTCTTTCATCAAGTGATAA+TGG + chr6_4:8037487-8037506 Msa0974750:CDS 30.0%
!! ACTAAGATTTGAAGCAGTTT+TGG - chr6_4:8037518-8037537 None:intergenic 30.0%
TGTCTATGATTGAGTTTGTA+GGG + chr6_4:8037797-8037816 Msa0974750:CDS 30.0%
AGTTCAATTGTGAAAGAAGA+AGG + chr6_4:8037829-8037848 Msa0974750:CDS 30.0%
ATGATCAAGATCAAGATCAA+TGG + chr6_4:8037857-8037876 Msa0974750:CDS 30.0%
! TCTTGTCGTATTTTCACTAT+TGG + chr6_4:8038288-8038307 Msa0974750:three_prime_UTR 30.0%
TAGAATTGTGATCATCTTCT+TGG + chr6_4:8038487-8038506 Msa0974750:three_prime_UTR 30.0%
! GTAATTTGTGAAAGTGAATC+AGG + chr6_4:8038637-8038656 Msa0974750:three_prime_UTR 30.0%
! TAGAGCTCTTTTCTTCTAAA+GGG - chr6_4:8038665-8038684 None:intergenic 30.0%
! ATAGAGCTCTTTTCTTCTAA+AGG - chr6_4:8038666-8038685 None:intergenic 30.0%
TTTAGAAGAAAAGAGCTCTA+TGG + chr6_4:8038665-8038684 Msa0974750:three_prime_UTR 30.0%
AAACCAACTTTGTCACAACA+TGG - chr6_4:8035814-8035833 None:intergenic 35.0%
TTGGTTTAAAGAAAGGTCCA+TGG + chr6_4:8035827-8035846 Msa0974750:CDS 35.0%
GTGTGAAGTCAGAAAGAAAT+TGG + chr6_4:8036013-8036032 Msa0974750:intron 35.0%
AAATTAGGGCTTCAAAGATG+TGG + chr6_4:8036192-8036211 Msa0974750:intron 35.0%
ATTCAACTTCATGCTCTCTT+AGG + chr6_4:8036300-8036319 Msa0974750:CDS 35.0%
TTCAACTTCATGCTCTCTTA+GGG + chr6_4:8036301-8036320 Msa0974750:CDS 35.0%
!! AGTAAGTGCTGAGTAAGAAT+GGG - chr6_4:8036627-8036646 None:intergenic 35.0%
!! TAGTAAGTGCTGAGTAAGAA+TGG - chr6_4:8036628-8036647 None:intergenic 35.0%
TAAGACATACCTCACAACAA+GGG - chr6_4:8036701-8036720 None:intergenic 35.0%
TTAAGACATACCTCACAACA+AGG - chr6_4:8036702-8036721 None:intergenic 35.0%
AATGGGTAGGAATAGTAGAA+TGG - chr6_4:8036748-8036767 None:intergenic 35.0%
! CTTGAATTATTTGTTGGGGA+TGG - chr6_4:8036808-8036827 None:intergenic 35.0%
GGAACACACATCTTAAGAAA+AGG + chr6_4:8037413-8037432 Msa0974750:CDS 35.0%
AACAAAAATGGGAATTGACC+CGG + chr6_4:8037438-8037457 Msa0974750:CDS 35.0%
!!! TTTTAGGTTTGTGTGTAACC+GGG - chr6_4:8037459-8037478 None:intergenic 35.0%
TGCTTCAAATCTTAGTCACA+TGG + chr6_4:8037522-8037541 Msa0974750:CDS 35.0%
ATCATAGTCACTTGAAAGCT+TGG + chr6_4:8037626-8037645 Msa0974750:CDS 35.0%
GTTGCACCAATTATGAATAG+TGG + chr6_4:8037697-8037716 Msa0974750:CDS 35.0%
! ATGAATAGTGGAGAAATTGG+AGG + chr6_4:8037709-8037728 Msa0974750:CDS 35.0%
GTGTCTATGATTGAGTTTGT+AGG + chr6_4:8037796-8037815 Msa0974750:CDS 35.0%
TCAATTGTGAAAGAAGAAGG+TGG + chr6_4:8037832-8037851 Msa0974750:CDS 35.0%
CAAGATCAAGATCAATGGAA+AGG + chr6_4:8037862-8037881 Msa0974750:CDS 35.0%
! TCATGAGTTGACTATGTCAA+TGG + chr6_4:8037921-8037940 Msa0974750:CDS 35.0%
ATGATGTCATTGCTGAAGAA+GGG + chr6_4:8037956-8037975 Msa0974750:CDS 35.0%
CAAAACATTGGTGAATCAGA+TGG - chr6_4:8038144-8038163 None:intergenic 35.0%
TAGTGAAAATACGACAAGAC+TGG - chr6_4:8038287-8038306 None:intergenic 35.0%
GACTTATTGCAGAATTGTAG+AGG + chr6_4:8038368-8038387 Msa0974750:three_prime_UTR 35.0%
ACTAGAAACAATGCACTAAG+TGG - chr6_4:8038574-8038593 None:intergenic 35.0%
TCACCATGTTGTGACAAAGT+TGG + chr6_4:8035808-8035827 Msa0974750:CDS 40.0%
AAGAACATGGTCATGGAAGT+TGG + chr6_4:8035887-8035906 Msa0974750:CDS 40.0%
GTAAGAGCTGCAGATTAAGA+TGG + chr6_4:8036214-8036233 Msa0974750:CDS 40.0%
CTTAGGCCAGATATTAAGAG+AGG + chr6_4:8036246-8036265 Msa0974750:CDS 40.0%
! GAGAGCATGAAGTTGAATGA+TGG - chr6_4:8036298-8036317 None:intergenic 40.0%
ATACCTCACAACAAGGGAAT+TGG - chr6_4:8036695-8036714 None:intergenic 40.0%
! ATTATTTGTTGGGGATGGGT+TGG - chr6_4:8036803-8036822 None:intergenic 40.0%
! CTGACATCCAAGTTTGTTCA+AGG + chr6_4:8036864-8036883 Msa0974750:intron 40.0%
GTTCACACCTTGAACAAACT+TGG - chr6_4:8036874-8036893 None:intergenic 40.0%
TCTGCGAGAGAAATTTAGAG+AGG - chr6_4:8037157-8037176 None:intergenic 40.0%
GTCAGCTATAGCAACACATT+TGG + chr6_4:8037357-8037376 Msa0974750:CDS 40.0%
ATCTTAGTCACATGGCTCAA+TGG + chr6_4:8037530-8037549 Msa0974750:CDS 40.0%
TCTTAGTCACATGGCTCAAT+GGG + chr6_4:8037531-8037550 Msa0974750:CDS 40.0%
! AATAGTGGAGAAATTGGAGG+AGG + chr6_4:8037712-8037731 Msa0974750:CDS 40.0%
GATGATGTCATTGCTGAAGA+AGG + chr6_4:8037955-8037974 Msa0974750:CDS 40.0%
AGTGGAGGTGAATCTAACAA+TGG + chr6_4:8038030-8038049 Msa0974750:CDS 40.0%
! GAATCTAACAATGGTGGTGA+TGG + chr6_4:8038039-8038058 Msa0974750:CDS 40.0%
!! TGATCTTCTTCTGGAGTCCA+TGG - chr6_4:8035847-8035866 None:intergenic 45.0%
! GCATCATTACCAGCTTTAGC+TGG - chr6_4:8035922-8035941 None:intergenic 45.0%
TTCATGCTCTCTTAGGGAAC+AGG + chr6_4:8036307-8036326 Msa0974750:CDS 45.0%
! CTTCCAATTCCCTTGTTGTG+AGG + chr6_4:8036689-8036708 Msa0974750:intron 45.0%
GACTTGAGTTTGTCAGAGAG+TGG + chr6_4:8038012-8038031 Msa0974750:CDS 45.0%
TTGAGTTTGTCAGAGAGTGG+AGG + chr6_4:8038015-8038034 Msa0974750:CDS 45.0%
GGAGGTGAATCTAACAATGG+TGG + chr6_4:8038033-8038052 Msa0974750:CDS 45.0%
!! TCTAACAATGGTGGTGATGG+TGG + chr6_4:8038042-8038061 Msa0974750:CDS 45.0%
!! AATGGTGGTGATGGTGGAAA+TGG + chr6_4:8038048-8038067 Msa0974750:CDS 45.0%
!!! TAGTTTTTTTTTTTTTTTTT+GGG - chr6_4:8036962-8036981 None:intergenic 5.0%
!!! ATAGTTTTTTTTTTTTTTTT+TGG - chr6_4:8036963-8036982 None:intergenic 5.0%
GCTCTCTTAGGGAACAGGTT+TGG + chr6_4:8036312-8036331 Msa0974750:intron 50.0%
!! GGTGATGGTGGAAATGGAAG+TGG + chr6_4:8038054-8038073 Msa0974750:CDS 50.0%
CGTGCTTTGCCAGCTAAAGC+TGG + chr6_4:8035910-8035929 Msa0974750:CDS 55.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 8035645 8038697 8035645 ID=Msa0974750;Name=Msa0974750
chr6_4 mRNA 8035645 8038697 8035645 ID=Msa0974750-mRNA-1;Parent=Msa0974750;Name=Msa0974750-mRNA-1;_AED=0.08;_eAED=0.08;_QI=154|1|1|1|0.5|1|3|533|357
chr6_4 exon 8035645 8035931 8035645 ID=Msa0974750-mRNA-1:exon:3006;Parent=Msa0974750-mRNA-1
chr6_4 exon 8036199 8036328 8036199 ID=Msa0974750-mRNA-1:exon:3007;Parent=Msa0974750-mRNA-1
chr6_4 exon 8037354 8038697 8037354 ID=Msa0974750-mRNA-1:exon:3008;Parent=Msa0974750-mRNA-1
chr6_4 five_prime_UTR 8035645 8035798 8035645 ID=Msa0974750-mRNA-1:five_prime_utr;Parent=Msa0974750-mRNA-1
chr6_4 CDS 8035799 8035931 8035799 ID=Msa0974750-mRNA-1:cds;Parent=Msa0974750-mRNA-1
chr6_4 CDS 8036199 8036328 8036199 ID=Msa0974750-mRNA-1:cds;Parent=Msa0974750-mRNA-1
chr6_4 CDS 8037354 8038164 8037354 ID=Msa0974750-mRNA-1:cds;Parent=Msa0974750-mRNA-1
chr6_4 three_prime_UTR 8038165 8038697 8038165 ID=Msa0974750-mRNA-1:three_prime_utr;Parent=Msa0974750-mRNA-1
Gene Sequence

>Msa0974750

ATGGGACGTTCACCATGTTGTGACAAAGTTGGTTTAAAGAAAGGTCCATGGACTCCAGAAGAAGATCAAAAACTCTTAGCTTATATTGAAGAACATGGTCATGGAAGTTGGCGTGCTTTGCCAGCTAAAGCTGGGCTTCAAAGATGTGGTAAGAGCTGCAGATTAAGATGGACTAATTATCTTAGGCCAGATATTAAGAGAGGAAAGTTTAGTTTGCAAGAAGAACAAACCATCATTCAACTTCATGCTCTCTTAGGGAACAGGTGGTCAGCTATAGCAACACATTTGGCAAAGAGAACAGATAATGAGATAAAGAATTATTGGAACACACATCTTAAGAAAAGGTTAACAAAAATGGGAATTGACCCGGTTACACACAAACCTAAAAATGATGCACTTCTTTCATCAAGTGATAATGGTCATTCCAAAACTGCTTCAAATCTTAGTCACATGGCTCAATGGGAAAGTGCTAGACTTGAAGCTGAAGCTAGACTTGTTAGAGAGTCCAAAATTCGTTCACATAATTCACTTCTTCATCATAGTCACTTGAAAGCTTGGAATATTAATCTTGAGTCTCCTACTTCAACTTTATCTTTCAATGAAAATGTTGCACCAATTATGAATAGTGGAGAAATTGGAGGAGGAGAAAATAATAACAACAATGGTAATGAGAAAAATATTAATAATGATGAGAACAATGGTGTTGTGTCTATGATTGAGTTTGTAGGGACTAATTCAAGTTCAATTGTGAAAGAAGAAGGTGGTGATGATCAAGATCAAGATCAATGGAAAGGTTATGAAAGTTCATTGACTTTTACATCAAATCTTCATCATGAGTTGACTATGTCAATGGATCAAAGTGTTGATGATGTCATTGCTGAAGAAGGGTTTACTAATCTTTTGCTTAAGACAAATTCTGAAGACTTGAGTTTGTCAGAGAGTGGAGGTGAATCTAACAATGGTGGTGATGGTGGAAATGGAAGTGGAAGTGAATTCTATGAAGATAACAATAACTACTGGAATAATATTCTTAATTTAGTTAATTCTTCTCCATCTGATTCACCAATGTTTTGA
Protein sequence

>Msa0974750

MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLAKRTDNEIKNYWNTHLKKRLTKMGIDPVTHKPKNDALLSSSDNGHSKTASNLSHMAQWESARLEAEARLVRESKIRSHNSLLHHSHLKAWNINLESPTSTLSFNENVAPIMNSGEIGGGENNNNNGNEKNINNDENNGVVSMIEFVGTNSSSIVKEEGGDDQDQDQWKGYESSLTFTSNLHHELTMSMDQSVDDVIAEEGFTNLLLKTNSEDLSLSESGGESNNGGDGGNGSGSEFYEDNNNYWNNILNLVNSSPSDSPMF*