Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1257920 | XP_013457632.1 | 96.026 | 151 | 3 | 1 | 1 | 151 | 1 | 148 | 5.50e-97 | 286 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1257920 | sp|Q6NLF7|LTPG7_ARATH | 43.046 | 151 | 75 | 5 | 6 | 150 | 5 | 150 | 1.40e-32 | 115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0047660 | Msa1257920 | -0.801731 | 7.839761e-49 | -8.615850e-47 |
| Msa0619030 | Msa1257920 | -0.807909 | 4.014841e-50 | -8.615850e-47 |
| Msa0628200 | Msa1257920 | 0.800448 | 1.434554e-48 | -8.615850e-47 |
| Msa0637590 | Msa1257920 | 0.807339 | 5.304729e-50 | -8.615850e-47 |
| Msa0644330 | Msa1257920 | 0.815551 | 8.725541e-52 | -8.615850e-47 |
| Msa0644340 | Msa1257920 | 0.808031 | 3.781587e-50 | -8.615850e-47 |
| Msa0696260 | Msa1257920 | 0.825966 | 3.513836e-54 | -8.615850e-47 |
| Msa0161230 | Msa1257920 | 0.827004 | 1.987648e-54 | -8.615850e-47 |
| Msa0204140 | Msa1257920 | 0.835943 | 1.250251e-56 | -8.615850e-47 |
| Msa1257920 | Msa1269200 | 0.818973 | 1.482142e-52 | -8.615850e-47 |
| Msa1257920 | Msa1287500 | 0.807743 | 4.355238e-50 | -8.615850e-47 |
| Msa1257920 | Msa1301280 | -0.823803 | 1.137618e-53 | -8.615850e-47 |
| Msa1257920 | Msa1405530 | 0.819206 | 1.311632e-52 | -8.615850e-47 |
| Msa1015360 | Msa1257920 | 0.800164 | 1.638329e-48 | -8.615850e-47 |
| Msa0285890 | Msa1257920 | 0.831734 | 1.411567e-55 | -8.615850e-47 |
| Msa1111860 | Msa1257920 | 0.803867 | 2.839548e-49 | -8.615850e-47 |
| Msa1137750 | Msa1257920 | 0.805083 | 1.584512e-49 | -8.615850e-47 |
| Msa1154060 | Msa1257920 | 0.815414 | 9.359157e-52 | -8.615850e-47 |
| Msa0525180 | Msa1257920 | -0.803613 | 3.206908e-49 | -8.615850e-47 |
| Msa0557240 | Msa1257920 | 0.802842 | 4.630067e-49 | -8.615850e-47 |
| Msa0588040 | Msa1257920 | 0.809723 | 1.643446e-50 | -8.615850e-47 |
| Msa0597180 | Msa1257920 | 0.805812 | 1.114304e-49 | -8.615850e-47 |
| Msa0966590 | Msa1257920 | 0.827123 | 1.860990e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1257920 | MtrunA17_Chr4g0056621 | 96.026 | 151 | 3 | 1 | 1 | 151 | 1 | 148 | 5.06e-101 | 286 |
| Msa1257920 | MtrunA17_Chr5g0398841 | 44.000 | 125 | 64 | 5 | 31 | 151 | 34 | 156 | 5.41e-27 | 99.0 |
| Msa1257920 | MtrunA17_Chr5g0398831 | 38.776 | 147 | 76 | 6 | 9 | 145 | 12 | 154 | 1.37e-25 | 95.5 |
| Msa1257920 | MtrunA17_Chr5g0398821 | 36.913 | 149 | 87 | 5 | 5 | 150 | 9 | 153 | 1.97e-25 | 94.7 |
| Msa1257920 | MtrunA17_Chr4g0003641 | 28.378 | 148 | 82 | 6 | 6 | 150 | 10 | 136 | 5.05e-12 | 59.7 |
| Msa1257920 | MtrunA17_Chr6g0478571 | 25.962 | 104 | 76 | 1 | 33 | 135 | 52 | 155 | 4.06e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1257920 | AT1G62790.1 | 43.046 | 151 | 75 | 5 | 6 | 150 | 5 | 150 | 1.42e-33 | 115 |
| Msa1257920 | AT1G62790.2 | 43.333 | 150 | 75 | 5 | 6 | 150 | 5 | 149 | 1.68e-33 | 115 |
| Msa1257920 | AT1G70250.1 | 42.574 | 101 | 53 | 2 | 11 | 110 | 4 | 100 | 8.74e-22 | 90.9 |
| Msa1257920 | AT1G73550.1 | 32.667 | 150 | 85 | 6 | 5 | 144 | 5 | 148 | 2.79e-17 | 73.9 |
| Msa1257920 | AT1G73560.1 | 33.846 | 130 | 79 | 3 | 23 | 150 | 22 | 146 | 1.08e-15 | 69.7 |
| Msa1257920 | AT4G12360.1 | 33.607 | 122 | 76 | 4 | 33 | 150 | 41 | 161 | 1.73e-13 | 64.3 |
| Msa1257920 | AT1G18280.1 | 32.407 | 108 | 61 | 2 | 11 | 106 | 7 | 114 | 3.11e-13 | 64.3 |
| Msa1257920 | AT1G73550.2 | 32.283 | 127 | 75 | 5 | 5 | 126 | 5 | 125 | 5.34e-13 | 62.4 |
Find 39 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGTGAACTCTGATTCAATT+TGG | 0.199864 | 8_2:-58949489 | Msa1257920:three_prime_UTR |
| GGTAATCAGCACATGGAATT+AGG | 0.241616 | 8_2:+58952013 | None:intergenic |
| CTGAGTAGTATTGATGTTAA+AGG | 0.279278 | 8_2:+58951882 | None:intergenic |
| ATGTAATTTCATACATTGAT+TGG | 0.355871 | 8_2:-58949560 | Msa1257920:three_prime_UTR |
| TACTTCCGGCGGGTCCCCAC+CGG | 0.360570 | 8_2:-58951112 | Msa1257920:CDS |
| TGTAATCTCTTCTATGCTCC+TGG | 0.366171 | 8_2:-58951916 | Msa1257920:CDS |
| AGTGAACTCTGATTCAATTT+GGG | 0.369936 | 8_2:-58949488 | Msa1257920:three_prime_UTR |
| CGGCGTTTGACTTGACAATA+AGG | 0.378858 | 8_2:-58952290 | Msa1257920:five_prime_UTR |
| TAGGTGGTTTGGTTGAATTA+AGG | 0.397792 | 8_2:+58951992 | None:intergenic |
| GCTACAACAGGTGGTGATAA+AGG | 0.397964 | 8_2:-58949710 | Msa1257920:CDS |
| ACAGCAAGAACTAGGTGGTT+TGG | 0.446180 | 8_2:+58951981 | None:intergenic |
| TCAGCTCCAGCTCCTACTTC+CGG | 0.447064 | 8_2:-58951126 | Msa1257920:CDS |
| AATACAGTAGAGGTTTAAGA+AGG | 0.453213 | 8_2:+58949601 | None:intergenic |
| TGTGTCATTGATGGTAGGTA+TGG | 0.480773 | 8_2:-58952097 | Msa1257920:CDS |
| ATGATGTTCAATTAGAAAAG+TGG | 0.491731 | 8_2:-58949632 | Msa1257920:exon |
| ATTGGATCACAGCAAGAACT+AGG | 0.493116 | 8_2:+58951973 | None:intergenic |
| ATTCACCATGCAGCTACAAC+AGG | 0.493430 | 8_2:-58949722 | Msa1257920:intron |
| GCAGGCAGAGTCTCATTCAC+TGG | 0.496932 | 8_2:-58949683 | Msa1257920:CDS |
| CATCATATATCATATATAAA+CGG | 0.499810 | 8_2:+58949393 | None:intergenic |
| ATTAGGTTTGTAGCACATGA+AGG | 0.504332 | 8_2:+58952030 | None:intergenic |
| TTAAAGGTTGCAAGCAAACC+AGG | 0.530324 | 8_2:+58951898 | None:intergenic |
| GGTGGTGATAAAGGAGCTGC+AGG | 0.532328 | 8_2:-58949701 | Msa1257920:CDS |
| TTTATATATGATATATGATG+TGG | 0.537421 | 8_2:-58949390 | Msa1257920:three_prime_UTR |
| CTCCAGCTCCTACTTCCGGC+GGG | 0.538414 | 8_2:-58951122 | Msa1257920:CDS |
| TAAATAAATAAATACAGTAG+AGG | 0.569488 | 8_2:+58949591 | None:intergenic |
| TTACATACTGTGTTTGCAAG+TGG | 0.570284 | 8_2:+58951816 | None:intergenic |
| CTTTAACATCAATACTACTC+AGG | 0.573773 | 8_2:-58951881 | Msa1257920:CDS |
| ATACAGTAGAGGTTTAAGAA+GGG | 0.575037 | 8_2:+58949602 | None:intergenic |
| GCTCCAGCTCCTACTTCCGG+CGG | 0.581336 | 8_2:-58951123 | Msa1257920:CDS |
| TTAGGTTTGTAGCACATGAA+GGG | 0.589848 | 8_2:+58952031 | None:intergenic |
| TTTGTTGATAAATCTACTTG+TGG | 0.596159 | 8_2:-58949430 | Msa1257920:three_prime_UTR |
| GAAGAAGATTCTTACCCGGT+GGG | 0.613228 | 8_2:+58951097 | None:intergenic |
| CACCATGCAGCTACAACAGG+TGG | 0.627084 | 8_2:-58949719 | Msa1257920:intron |
| AAGAAGATTCTTACCCGGTG+GGG | 0.685476 | 8_2:+58951098 | None:intergenic |
| CTTGCGTTGAGTCGTAACTG+TGG | 0.693927 | 8_2:-58951856 | Msa1257920:CDS |
| GGATCACAGCAAGAACTAGG+TGG | 0.697170 | 8_2:+58951976 | None:intergenic |
| GAATTAAGGTAATCAGCACA+TGG | 0.709687 | 8_2:+58952006 | None:intergenic |
| TTTGCAAGTGGTAAGATCAG+TGG | 0.711684 | 8_2:+58951828 | None:intergenic |
| GTTGATGATCAACACTACAG+AGG | 0.726445 | 8_2:-58952070 | Msa1257920:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAGCATTTTTTTTTTTTTA+GGG | - | chr8_2:58950424-58950443 | Msa1257920:intron | 10.0% |
| !! | TTGAAATTAAAAAAAGATAA+AGG | + | chr8_2:58951279-58951298 | None:intergenic | 10.0% |
| !!! | ATCTTTTTTTAATTTCAATT+TGG | - | chr8_2:58951281-58951300 | Msa1257920:intron | 10.0% |
| !!! | TAAAGTTTATAGTTTTTTTA+AGG | + | chr8_2:58951346-58951365 | None:intergenic | 10.0% |
| !!! | GTTTATGAAATTTAAAATTT+GGG | + | chr8_2:58951433-58951452 | None:intergenic | 10.0% |
| !!! | TGTTTATGAAATTTAAAATT+TGG | + | chr8_2:58951434-58951453 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAAAAGTAGAA+TGG | + | chr8_2:58951782-58951801 | None:intergenic | 10.0% |
| !! | TTATTCAACAACAAAAAAAA+TGG | - | chr8_2:58949509-58949528 | Msa1257920:three_prime_UTR | 15.0% |
| !!! | TGAATATAACTTTTTTTTCT+AGG | + | chr8_2:58950077-58950096 | None:intergenic | 15.0% |
| !!! | TGATATTTTGACAATAAATT+TGG | - | chr8_2:58950110-58950129 | Msa1257920:intron | 15.0% |
| !!! | GAAAGCATTTTTTTTTTTTT+AGG | - | chr8_2:58950423-58950442 | Msa1257920:intron | 15.0% |
| !!! | AAGCATTTTTTTTTTTTTAG+GGG | - | chr8_2:58950425-58950444 | Msa1257920:intron | 15.0% |
| !!! | TGAATCTAAAAATGAAATTT+TGG | + | chr8_2:58950889-58950908 | None:intergenic | 15.0% |
| !!! | TTTTAATCTTCTTCTATTTT+TGG | + | chr8_2:58951202-58951221 | None:intergenic | 15.0% |
| !! | AATAGAAGAAGATTAAAAAA+AGG | - | chr8_2:58951204-58951223 | Msa1257920:intron | 15.0% |
| !! | AAAAAACTATAAACTTTAGA+CGG | - | chr8_2:58951348-58951367 | Msa1257920:intron | 15.0% |
| !! | CATAAACAATAAAATTTCAA+TGG | - | chr8_2:58951446-58951465 | Msa1257920:intron | 15.0% |
| !!! | GCATGTATAATTTTTTTTTT+TGG | + | chr8_2:58951751-58951770 | None:intergenic | 15.0% |
| !! | TAAATAAATAAATACAGTAG+AGG | + | chr8_2:58952063-58952082 | None:intergenic | 15.0% |
| !! | CATCATATATCATATATAAA+CGG | + | chr8_2:58952261-58952280 | None:intergenic | 15.0% |
| !! | TTTATATATGATATATGATG+TGG | - | chr8_2:58952261-58952280 | Msa1257920:five_prime_UTR | 15.0% |
| !! | ATATTTGTCACATCAATTAA+AGG | + | chr8_2:58949884-58949903 | None:intergenic | 20.0% |
| !! | TTGATTCAATTCTTAATTTC+TGG | + | chr8_2:58950013-58950032 | None:intergenic | 20.0% |
| !! | AATGCAGTTTATTAATTCTA+TGG | + | chr8_2:58950280-58950299 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTTTTTTAGGGGA+AGG | - | chr8_2:58950429-58950448 | Msa1257920:intron | 20.0% |
| !! | TTATTCAAACAAAAAGGTAA+AGG | + | chr8_2:58950494-58950513 | None:intergenic | 20.0% |
| !! | CTGAAATTATTCAAACAAAA+AGG | + | chr8_2:58950500-58950519 | None:intergenic | 20.0% |
| !! | TTTGTTTGAATAATTTCAGA+TGG | - | chr8_2:58950501-58950520 | Msa1257920:intron | 20.0% |
| !!! | AAGAGTATTCTATTTTATCA+AGG | + | chr8_2:58951168-58951187 | None:intergenic | 20.0% |
| !! | CATAAACAATTATTTCATAC+CGG | - | chr8_2:58951516-58951535 | Msa1257920:intron | 20.0% |
| !!! | ATCATTATCATTGTTTTTGA+AGG | - | chr8_2:58951543-58951562 | Msa1257920:intron | 20.0% |
| !! | TAATCTAACAATATTGACAT+TGG | + | chr8_2:58951649-58951668 | None:intergenic | 20.0% |
| !!! | CTCACATAATTGATATATTT+TGG | + | chr8_2:58951683-58951702 | None:intergenic | 20.0% |
| !! | AAAAAAAGTAGAATGGAATT+GGG | + | chr8_2:58951775-58951794 | None:intergenic | 20.0% |
| !! | AAAAAAAAGTAGAATGGAAT+TGG | + | chr8_2:58951776-58951795 | None:intergenic | 20.0% |
| !! | TTGCAATAATAATTGACAAT+TGG | + | chr8_2:58951887-58951906 | None:intergenic | 20.0% |
| !!! | ATTCTCTTTTATACTCTTAT+TGG | - | chr8_2:58951991-58952010 | Msa1257920:CDS | 20.0% |
| !! | ATGTAATTTCATACATTGAT+TGG | - | chr8_2:58952091-58952110 | Msa1257920:CDS | 20.0% |
| !!! | AAATTTGATTTTAGAGTTCG+TGG | + | chr8_2:58949483-58949502 | None:intergenic | 25.0% |
| !!! | GTTTCAACTGTTTTTTTGAT+TGG | + | chr8_2:58949699-58949718 | None:intergenic | 25.0% |
| !! | GTGACAAATATTTGACTTAT+TGG | - | chr8_2:58949893-58949912 | Msa1257920:intron | 25.0% |
| !!! | TGTGTCGGATTTTTTTTTAT+TGG | - | chr8_2:58949933-58949952 | Msa1257920:intron | 25.0% |
| !!! | ACACTTTTTTTCCATCAATT+TGG | - | chr8_2:58950312-58950331 | Msa1257920:intron | 25.0% |
| ! | AAAAAACATCAAATGTTTGC+TGG | - | chr8_2:58950388-58950407 | Msa1257920:intron | 25.0% |
| !!! | TAGTCTATCAATTAGTCTTT+CGG | - | chr8_2:58950809-58950828 | Msa1257920:intron | 25.0% |
| !!! | ATTTTGGTTATAATAGTGAC+CGG | + | chr8_2:58950873-58950892 | None:intergenic | 25.0% |
| ! | CTAATTTCAATTCATTGTGT+TGG | + | chr8_2:58951002-58951021 | None:intergenic | 25.0% |
| ! | AATAAGAGATCAAATTTGAG+AGG | - | chr8_2:58951045-58951064 | Msa1257920:intron | 25.0% |
| ! | ATAAGAGATCAAATTTGAGA+GGG | - | chr8_2:58951046-58951065 | Msa1257920:intron | 25.0% |
| ! | TATCAAGGTAAAAACATTAC+TGG | + | chr8_2:58951153-58951172 | None:intergenic | 25.0% |
| ! | TAATCCCTTAACTTAATTTC+AGG | - | chr8_2:58951241-58951260 | Msa1257920:intron | 25.0% |
| ! | GTTACCTGAAATTAAGTTAA+GGG | + | chr8_2:58951248-58951267 | None:intergenic | 25.0% |
| ! | TGTTACCTGAAATTAAGTTA+AGG | + | chr8_2:58951249-58951268 | None:intergenic | 25.0% |
| !! | TTGTCTTTTCCTAATTCTAA+GGG | + | chr8_2:58951401-58951420 | None:intergenic | 25.0% |
| !! | TTTGTCTTTTCCTAATTCTA+AGG | + | chr8_2:58951402-58951421 | None:intergenic | 25.0% |
| ! | TCAATGGAGAACAATTATAT+TGG | - | chr8_2:58951462-58951481 | Msa1257920:intron | 25.0% |
| !! | AACAATGATAATGATAACAC+CGG | + | chr8_2:58951538-58951557 | None:intergenic | 25.0% |
| ! | TATTGTTAGATTAGATAGCA+TGG | - | chr8_2:58951656-58951675 | Msa1257920:intron | 25.0% |
| ! | GATTATACATGTATAGTTCT+TGG | + | chr8_2:58951812-58951831 | None:intergenic | 25.0% |
| !! | ACTTTTCTAATTGAACATCA+TGG | + | chr8_2:58952020-58952039 | None:intergenic | 25.0% |
| ! | ATGATGTTCAATTAGAAAAG+TGG | - | chr8_2:58952019-58952038 | Msa1257920:CDS | 25.0% |
| !! | TTTGTTGATAAATCTACTTG+TGG | - | chr8_2:58952221-58952240 | Msa1257920:five_prime_UTR | 25.0% |
| !! | CTGAGTAGTATTGATGTTAA+AGG | + | chr8_2:58949772-58949791 | None:intergenic | 30.0% |
| CTTTAACATCAATACTACTC+AGG | - | chr8_2:58949770-58949789 | Msa1257920:intron | 30.0% | |
| ACTTCTTTGTATGATTGTGT+CGG | - | chr8_2:58949918-58949937 | Msa1257920:intron | 30.0% | |
| TTTCTAGATCTAGTGAGAAA+AGG | - | chr8_2:58949983-58950002 | Msa1257920:intron | 30.0% | |
| TTCTAGATCTAGTGAGAAAA+GGG | - | chr8_2:58949984-58950003 | Msa1257920:intron | 30.0% | |
| !!! | GATGTTTTTTATGAGACTGA+TGG | + | chr8_2:58950378-58950397 | None:intergenic | 30.0% |
| ! | AAGAAGTGAAAATCAAGTTG+AGG | + | chr8_2:58950587-58950606 | None:intergenic | 30.0% |
| AGACCACAATTATTTATGAG+TGG | - | chr8_2:58950939-58950958 | Msa1257920:intron | 30.0% | |
| CATCCACTCATAAATAATTG+TGG | + | chr8_2:58950945-58950964 | None:intergenic | 30.0% | |
| CACAATTATTTATGAGTGGA+TGG | - | chr8_2:58950943-58950962 | Msa1257920:intron | 30.0% | |
| ! | CTTAATTTCAGGTAACAGTT+TGG | - | chr8_2:58951252-58951271 | Msa1257920:intron | 30.0% |
| ! | TGGTACCTGAATTTAAGTTA+AGG | - | chr8_2:58951301-58951320 | Msa1257920:intron | 30.0% |
| ! | GGTACCTGAATTTAAGTTAA+GGG | - | chr8_2:58951302-58951321 | Msa1257920:intron | 30.0% |
| TAGTCCCTTAACTTAAATTC+AGG | + | chr8_2:58951309-58951328 | None:intergenic | 30.0% | |
| AAACTATAAACTTTAGACGG+TGG | - | chr8_2:58951351-58951370 | Msa1257920:intron | 30.0% | |
| ! | TGTCTTTTCCTAATTCTAAG+GGG | + | chr8_2:58951400-58951419 | None:intergenic | 30.0% |
| ATGATTAGATGTACTTCACA+AGG | + | chr8_2:58951840-58951859 | None:intergenic | 30.0% | |
| ATACAGTAGAGGTTTAAGAA+GGG | + | chr8_2:58952052-58952071 | None:intergenic | 30.0% | |
| AATACAGTAGAGGTTTAAGA+AGG | + | chr8_2:58952053-58952072 | None:intergenic | 30.0% | |
| TAGTGAACTCTGATTCAATT+TGG | - | chr8_2:58952162-58952181 | Msa1257920:five_prime_UTR | 30.0% | |
| AGTGAACTCTGATTCAATTT+GGG | - | chr8_2:58952163-58952182 | Msa1257920:five_prime_UTR | 30.0% | |
| !! | CATCACTTTTGTGTCATTGA+TGG | - | chr8_2:58949545-58949564 | Msa1257920:three_prime_UTR | 35.0% |
| !! | ACTTTTGTGTCATTGATGGT+AGG | - | chr8_2:58949549-58949568 | Msa1257920:three_prime_UTR | 35.0% |
| TTAGGTTTGTAGCACATGAA+GGG | + | chr8_2:58949623-58949642 | None:intergenic | 35.0% | |
| ATTAGGTTTGTAGCACATGA+AGG | + | chr8_2:58949624-58949643 | None:intergenic | 35.0% | |
| GAATTAAGGTAATCAGCACA+TGG | + | chr8_2:58949648-58949667 | None:intergenic | 35.0% | |
| !! | TAGGTGGTTTGGTTGAATTA+AGG | + | chr8_2:58949662-58949681 | None:intergenic | 35.0% |
| TTACATACTGTGTTTGCAAG+TGG | + | chr8_2:58949838-58949857 | None:intergenic | 35.0% | |
| TCTCACTAGATCTAGAAAAC+TGG | + | chr8_2:58949981-58950000 | None:intergenic | 35.0% | |
| TCTAGATCTAGTGAGAAAAG+GGG | - | chr8_2:58949985-58950004 | Msa1257920:intron | 35.0% | |
| TACCATTGCTTCGTTGTATT+TGG | - | chr8_2:58950045-58950064 | Msa1257920:intron | 35.0% | |
| ATCCAAATACAACGAAGCAA+TGG | + | chr8_2:58950050-58950069 | None:intergenic | 35.0% | |
| GGTTAATCATAGTGTAGCAA+AGG | + | chr8_2:58950259-58950278 | None:intergenic | 35.0% | |
| ! | AATTTGGTCCATCTGGTTTA+AGG | - | chr8_2:58950328-58950347 | Msa1257920:intron | 35.0% |
| ATGTGAAGAAGATTCTTACC+CGG | + | chr8_2:58950561-58950580 | None:intergenic | 35.0% | |
| !! | AAGTGAAAATCAAGTTGAGG+AGG | + | chr8_2:58950584-58950603 | None:intergenic | 35.0% |
| ! | TTGTGTTGGTCTCAAAATTG+TGG | + | chr8_2:58950988-58951007 | None:intergenic | 35.0% |
| GCAAATATCTTCTTGTGGAT+TGG | + | chr8_2:58951378-58951397 | None:intergenic | 35.0% | |
| GATATTTGCCCCTTAGAATT+AGG | - | chr8_2:58951389-58951408 | Msa1257920:intron | 35.0% | |
| !! | GATCTCTTTTGTGTTTGGTG+AGG | + | chr8_2:58949461-58949480 | None:intergenic | 40.0% |
| ! | TCGTGGATCTCTTTTGTGTT+TGG | + | chr8_2:58949466-58949485 | None:intergenic | 40.0% |
| ! | TGTGTCATTGATGGTAGGTA+TGG | - | chr8_2:58949554-58949573 | Msa1257920:three_prime_UTR | 40.0% |
| !! | GTTGATGATCAACACTACAG+AGG | - | chr8_2:58949581-58949600 | Msa1257920:three_prime_UTR | 40.0% |
| GGTAATCAGCACATGGAATT+AGG | + | chr8_2:58949641-58949660 | None:intergenic | 40.0% | |
| ATTGGATCACAGCAAGAACT+AGG | + | chr8_2:58949681-58949700 | None:intergenic | 40.0% | |
| TGTAATCTCTTCTATGCTCC+TGG | - | chr8_2:58949735-58949754 | Msa1257920:intron | 40.0% | |
| TTAAAGGTTGCAAGCAAACC+AGG | + | chr8_2:58949756-58949775 | None:intergenic | 40.0% | |
| TTTGCAAGTGGTAAGATCAG+TGG | + | chr8_2:58949826-58949845 | None:intergenic | 40.0% | |
| ATGCCTAATTGCTAAGAGTG+TGG | - | chr8_2:58950166-58950185 | Msa1257920:intron | 40.0% | |
| TTCCATCAATTTGGTCCATC+TGG | - | chr8_2:58950321-58950340 | Msa1257920:intron | 40.0% | |
| AACCAGATGGACCAAATTGA+TGG | + | chr8_2:58950326-58950345 | None:intergenic | 40.0% | |
| !! | CATCTTAGCCTTAAACCAGA+TGG | + | chr8_2:58950339-58950358 | None:intergenic | 40.0% |
| TCTATTGTCAGCTTCAACTG+CGG | + | chr8_2:58950642-58950661 | None:intergenic | 40.0% | |
| ATGATAAGAGATACTCCCTC+CGG | - | chr8_2:58950851-58950870 | Msa1257920:intron | 40.0% | |
| TGGTTATAATAGTGACCGGA+GGG | + | chr8_2:58950869-58950888 | None:intergenic | 40.0% | |
| TTGGTTATAATAGTGACCGG+AGG | + | chr8_2:58950870-58950889 | None:intergenic | 40.0% | |
| TTGAGAGGGAATAGTAGTTG+AGG | - | chr8_2:58951060-58951079 | Msa1257920:intron | 40.0% | |
| TGAGAGGGAATAGTAGTTGA+GGG | - | chr8_2:58951061-58951080 | Msa1257920:intron | 40.0% | |
| AAGGGGCAAATATCTTCTTG+TGG | + | chr8_2:58951383-58951402 | None:intergenic | 40.0% | |
| TGGTGAATTGCAAGTTTGTG+AGG | + | chr8_2:58951917-58951936 | None:intergenic | 40.0% | |
| !! | CGGCGTTTGACTTGACAATA+AGG | - | chr8_2:58949361-58949380 | Msa1257920:three_prime_UTR | 45.0% |
| ACAGCAAGAACTAGGTGGTT+TGG | + | chr8_2:58949673-58949692 | None:intergenic | 45.0% | |
| CCACCACACTCTTAGCAATT+AGG | + | chr8_2:58950172-58950191 | None:intergenic | 45.0% | |
| ! | CCTAATTGCTAAGAGTGTGG+TGG | - | chr8_2:58950169-58950188 | Msa1257920:intron | 45.0% |
| AAGAAGATTCTTACCCGGTG+GGG | + | chr8_2:58950556-58950575 | None:intergenic | 45.0% | |
| GAAGAAGATTCTTACCCGGT+GGG | + | chr8_2:58950557-58950576 | None:intergenic | 45.0% | |
| TGAAGAAGATTCTTACCCGG+TGG | + | chr8_2:58950558-58950577 | None:intergenic | 45.0% | |
| ATTCACCATGCAGCTACAAC+AGG | - | chr8_2:58951929-58951948 | Msa1257920:CDS | 45.0% | |
| GCTACAACAGGTGGTGATAA+AGG | - | chr8_2:58951941-58951960 | Msa1257920:CDS | 45.0% | |
| GGATCACAGCAAGAACTAGG+TGG | + | chr8_2:58949678-58949697 | None:intergenic | 50.0% | |
| CTTGCGTTGAGTCGTAACTG+TGG | - | chr8_2:58949795-58949814 | Msa1257920:intron | 50.0% | |
| TCAGCTCCAGCTCCTACTTC+CGG | - | chr8_2:58950525-58950544 | Msa1257920:intron | 55.0% | |
| CACCATGCAGCTACAACAGG+TGG | - | chr8_2:58951932-58951951 | Msa1257920:CDS | 55.0% | |
| CACCACCTGTTGTAGCTGCA+TGG | + | chr8_2:58951937-58951956 | None:intergenic | 55.0% | |
| GGTGGTGATAAAGGAGCTGC+AGG | - | chr8_2:58951950-58951969 | Msa1257920:CDS | 55.0% | |
| GCAGGCAGAGTCTCATTCAC+TGG | - | chr8_2:58951968-58951987 | Msa1257920:CDS | 55.0% | |
| GCTCCAGCTCCTACTTCCGG+CGG | - | chr8_2:58950528-58950547 | Msa1257920:intron | 65.0% | |
| CTCCAGCTCCTACTTCCGGC+GGG | - | chr8_2:58950529-58950548 | Msa1257920:intron | 65.0% | |
| GACCCGCCGGAAGTAGGAGC+TGG | + | chr8_2:58950534-58950553 | None:intergenic | 70.0% | |
| TACTTCCGGCGGGTCCCCAC+CGG | - | chr8_2:58950539-58950558 | Msa1257920:intron | 70.0% | |
| GGTGGGGACCCGCCGGAAGT+AGG | + | chr8_2:58950540-58950559 | None:intergenic | 75.0% | |
| ACTTCCGGCGGGTCCCCACC+GGG | - | chr8_2:58950540-58950559 | Msa1257920:intron | 75.0% | |
| CTTACCCGGTGGGGACCCGC+CGG | + | chr8_2:58950547-58950566 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 58949359 | 58952314 | 58949359 | ID=Msa1257920;Name=Msa1257920 |
| chr8_2 | mRNA | 58949359 | 58952314 | 58949359 | ID=Msa1257920-mRNA-1;Parent=Msa1257920;Name=Msa1257920-mRNA-1;_AED=0.05;_eAED=0.05;_QI=169|1|1|1|1|1|3|281|151 |
| chr8_2 | exon | 58949359 | 58949731 | 58949359 | ID=Msa1257920-mRNA-1:exon:18243;Parent=Msa1257920-mRNA-1 |
| chr8_2 | exon | 58951112 | 58951153 | 58951112 | ID=Msa1257920-mRNA-1:exon:18242;Parent=Msa1257920-mRNA-1 |
| chr8_2 | exon | 58951824 | 58952314 | 58951824 | ID=Msa1257920-mRNA-1:exon:18241;Parent=Msa1257920-mRNA-1 |
| chr8_2 | five_prime_UTR | 58952146 | 58952314 | 58952146 | ID=Msa1257920-mRNA-1:five_prime_utr;Parent=Msa1257920-mRNA-1 |
| chr8_2 | CDS | 58951824 | 58952145 | 58951824 | ID=Msa1257920-mRNA-1:cds;Parent=Msa1257920-mRNA-1 |
| chr8_2 | CDS | 58951112 | 58951153 | 58951112 | ID=Msa1257920-mRNA-1:cds;Parent=Msa1257920-mRNA-1 |
| chr8_2 | CDS | 58949640 | 58949731 | 58949640 | ID=Msa1257920-mRNA-1:cds;Parent=Msa1257920-mRNA-1 |
| chr8_2 | three_prime_UTR | 58949359 | 58949639 | 58949359 | ID=Msa1257920-mRNA-1:three_prime_utr;Parent=Msa1257920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
