Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1289920 | XP_019420206.1 | 59.075 | 281 | 47 | 4 | 2 | 227 | 40 | 307 | 4.27e-103 | 311 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1289920 | sp|Q9ZTR0|SPDS2_PEA | 52.055 | 292 | 61 | 7 | 2 | 227 | 64 | 342 | 2.25e-83 | 254 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1289920 | A0A5B6YR24 | 62.948 | 251 | 55 | 6 | 2 | 225 | 65 | 304 | 2.50e-94 | 288 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa1289920 | 0.801148 | 1.032354e-48 | -8.615850e-47 |
| Msa0657970 | Msa1289920 | 0.802525 | 5.382402e-49 | -8.615850e-47 |
| Msa0157290 | Msa1289920 | 0.800507 | 1.395028e-48 | -8.615850e-47 |
| Msa1283860 | Msa1289920 | 0.800750 | 1.245044e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1289920 | MtrunA17_Chr8g0365071 | 52.055 | 292 | 61 | 7 | 2 | 227 | 64 | 342 | 3.75e-84 | 253 |
| Msa1289920 | MtrunA17_Chr5g0413701 | 44.406 | 286 | 92 | 7 | 2 | 227 | 65 | 343 | 8.93e-65 | 204 |
| Msa1289920 | MtrunA17_Chr1g0158851 | 35.417 | 288 | 105 | 9 | 2 | 222 | 84 | 357 | 1.28e-43 | 150 |
| Msa1289920 | MtrunA17_Chr3g0117881 | 32.982 | 285 | 126 | 8 | 2 | 225 | 54 | 334 | 1.57e-40 | 141 |
| Msa1289920 | MtrunA17_Chr3g0126551 | 53.846 | 117 | 48 | 2 | 107 | 222 | 242 | 353 | 1.56e-37 | 134 |
| Msa1289920 | MtrunA17_Chr3g0126551 | 51.095 | 137 | 54 | 4 | 2 | 133 | 79 | 207 | 2.59e-26 | 104 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1289920 | AT1G23820.1 | 42.857 | 294 | 84 | 8 | 2 | 227 | 57 | 334 | 7.57e-63 | 199 |
| Msa1289920 | AT1G70310.1 | 41.115 | 287 | 101 | 8 | 2 | 227 | 61 | 340 | 1.28e-54 | 178 |
| Msa1289920 | AT5G53120.1 | 38.621 | 290 | 97 | 9 | 2 | 224 | 80 | 355 | 2.65e-54 | 178 |
| Msa1289920 | AT5G53120.4 | 38.621 | 290 | 97 | 9 | 2 | 224 | 80 | 355 | 2.65e-54 | 178 |
| Msa1289920 | AT5G53120.2 | 38.621 | 290 | 97 | 9 | 2 | 224 | 80 | 355 | 2.65e-54 | 178 |
| Msa1289920 | AT5G53120.5 | 38.621 | 290 | 97 | 9 | 2 | 224 | 80 | 355 | 2.65e-54 | 178 |
| Msa1289920 | AT5G53120.3 | 38.621 | 290 | 97 | 9 | 2 | 224 | 80 | 355 | 2.65e-54 | 178 |
| Msa1289920 | AT5G53120.7 | 38.621 | 290 | 97 | 9 | 2 | 224 | 97 | 372 | 5.66e-54 | 177 |
| Msa1289920 | AT1G23820.2 | 50.993 | 151 | 59 | 4 | 2 | 148 | 101 | 240 | 5.12e-40 | 140 |
| Msa1289920 | AT5G53120.6 | 53.782 | 119 | 48 | 3 | 107 | 224 | 270 | 382 | 2.36e-36 | 132 |
| Msa1289920 | AT5G53120.6 | 40.764 | 157 | 58 | 5 | 2 | 129 | 80 | 230 | 4.31e-22 | 93.6 |
Find 40 sgRNAs with CRISPR-Local
Find 351 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGGAAGACCATGAATTTC+TGG | 0.156559 | 8_3:+44422606 | None:intergenic |
| ATATGGCAAGGTTCTTGTTT+TGG | 0.276213 | 8_3:-44422545 | Msa1289920:CDS |
| CTCTATTTCTAACCCCAAAA+AGG | 0.307016 | 8_3:-44422465 | Msa1289920:intron |
| TTTGTTAGTGGTGGAGTTGA+TGG | 0.314090 | 8_3:-44422076 | Msa1289920:CDS |
| GTGGCAAGGGCTCTTCTTCC+AGG | 0.318408 | 8_3:-44421068 | Msa1289920:CDS |
| GAAGATGAGTGATCATTTCT+TGG | 0.351645 | 8_3:+44422495 | None:intergenic |
| TACTTATCAAACTCAAATTT+AGG | 0.375043 | 8_3:+44419590 | None:intergenic |
| CATTTGTGAAATTGACAATA+TGG | 0.376368 | 8_3:-44422005 | Msa1289920:intron |
| TTTCATTATAGTGTGATGAT+TGG | 0.403844 | 8_3:-44420007 | Msa1289920:intron |
| GCACTCAGGCTGAAAGTATA+TGG | 0.405219 | 8_3:-44421034 | Msa1289920:CDS |
| GTCAAATTACCAGAAATTCA+TGG | 0.444727 | 8_3:-44422615 | Msa1289920:CDS |
| AAGGCTCTGTCAATTATGCT+TGG | 0.447774 | 8_3:-44420959 | Msa1289920:CDS |
| AATGACGTGCTACTTCTTGC+AGG | 0.454907 | 8_3:+44422047 | None:intergenic |
| CGAGTAAAAGATATGAATGA+TGG | 0.469620 | 8_3:+44419651 | None:intergenic |
| AAACATACCTTTGGATATGT+AGG | 0.477927 | 8_3:+44420927 | None:intergenic |
| TGAGTGCACATAACTTCTCC+TGG | 0.480436 | 8_3:+44421050 | None:intergenic |
| TGAAAGTATATGGCTTCATA+TGG | 0.483697 | 8_3:-44421024 | Msa1289920:CDS |
| TCGTTTGCGAAGAGGAAGAT+TGG | 0.488130 | 8_3:-44419734 | Msa1289920:CDS |
| CTTCTGCAGTCATCAACATA+TGG | 0.501887 | 8_3:-44422562 | Msa1289920:CDS |
| CAAGCATCCAGTGAATCCTA+TGG | 0.506681 | 8_3:-44419945 | Msa1289920:CDS |
| GTTAGTGGTGGAGTTGATGG+TGG | 0.514745 | 8_3:-44422073 | Msa1289920:CDS |
| ATGAGTGATCATTTCTTGGT+AGG | 0.523282 | 8_3:+44422499 | None:intergenic |
| GCTTCATATGGATATAATTG+AGG | 0.531349 | 8_3:-44421012 | Msa1289920:CDS |
| TTAGGCACCAACTTATTCCA+TGG | 0.532304 | 8_3:+44419608 | None:intergenic |
| CAACGGACCATGGAATAAGT+TGG | 0.534461 | 8_3:-44419615 | Msa1289920:three_prime_UTR |
| TTTATGCTTTGGTCAACTGA+GGG | 0.536762 | 8_3:-44419983 | Msa1289920:CDS |
| GTTTGCCGTCGTTTGCGAAG+AGG | 0.537586 | 8_3:-44419742 | Msa1289920:CDS |
| CTCGATTGGTCATCTATCAA+CGG | 0.564251 | 8_3:-44419632 | Msa1289920:three_prime_UTR |
| TCATGGTGTTACAACTTGCA+AGG | 0.599019 | 8_3:+44422588 | None:intergenic |
| ATCTTCCTCTTCGCAAACGA+CGG | 0.599100 | 8_3:+44419737 | None:intergenic |
| GGGTTAGAAATAGAGCAAAG+AGG | 0.606249 | 8_3:+44422473 | None:intergenic |
| TCAGAGTTGTAGAATTTGAG+AGG | 0.608842 | 8_3:+44419893 | None:intergenic |
| ATAGCTCAAAGCAGCTCATG+TGG | 0.610662 | 8_3:-44419684 | Msa1289920:three_prime_UTR |
| AGGAGAAGTTATGTGCACTC+AGG | 0.628779 | 8_3:-44421048 | Msa1289920:CDS |
| GCAGTCATCAACATATGGCA+AGG | 0.632795 | 8_3:-44422557 | Msa1289920:CDS |
| TACAGCTCCTACATATCCAA+AGG | 0.634403 | 8_3:-44420934 | Msa1289920:intron |
| GGTCATCTATCAACGGACCA+TGG | 0.641202 | 8_3:-44419625 | Msa1289920:three_prime_UTR |
| GGATGCTTGAAATCAACAAG+AGG | 0.671753 | 8_3:+44419959 | None:intergenic |
| GATGACTGCAGAAGACATCA+TGG | 0.676244 | 8_3:+44422571 | None:intergenic |
| TCTCAAATTCTACAACTCTG+AGG | 0.708144 | 8_3:-44419891 | Msa1289920:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATCTGAAATAAATAAAA+GGG | + | chr8_3:44420871-44420890 | None:intergenic | 10.0% |
| !! | AAGACATTTATTATATTTAA+TGG | - | chr8_3:44421663-44421682 | Msa1289920:intron | 10.0% |
| !! | CCTATATATATATTTATATA+GGG | + | chr8_3:44421745-44421764 | None:intergenic | 10.0% |
| !! | CCTATATAAATATATATATA+GGG | - | chr8_3:44421743-44421762 | Msa1289920:intron | 10.0% |
| !! | CTATATAAATATATATATAG+GGG | - | chr8_3:44421744-44421763 | Msa1289920:intron | 10.0% |
| !! | TATATAAATATATATATAGG+GGG | - | chr8_3:44421745-44421764 | Msa1289920:intron | 10.0% |
| !!! | AAAAAAAAAAAAGAGTATAT+TGG | - | chr8_3:44422556-44422575 | Msa1289920:CDS | 10.0% |
| !!! | AAAAAAAAAAAGAGTATATT+GGG | - | chr8_3:44422557-44422576 | Msa1289920:CDS | 10.0% |
| !!! | TATAAGTATTGTTTTTTTAA+AGG | - | chr8_3:44424499-44424518 | Msa1289920:intron | 10.0% |
| !! | CTTAAATAAGAGTAAAAATT+TGG | - | chr8_3:44419683-44419702 | Msa1289920:three_prime_UTR | 15.0% |
| !!! | TATAATCATGATAGTATTTT+AGG | - | chr8_3:44420685-44420704 | Msa1289920:intron | 15.0% |
| !!! | GAATATCTGAAATAAATAAA+AGG | + | chr8_3:44420872-44420891 | None:intergenic | 15.0% |
| !! | TTTATTTATTTCAGATATTC+AGG | - | chr8_3:44420872-44420891 | Msa1289920:intron | 15.0% |
| !!! | AATTTTCATATCTTATTCAA+AGG | - | chr8_3:44420982-44421001 | Msa1289920:CDS | 15.0% |
| !! | AGTTAACTAATTTGAATATT+TGG | + | chr8_3:44421405-44421424 | None:intergenic | 15.0% |
| !! | CCCTATATAAATATATATAT+AGG | - | chr8_3:44421742-44421761 | Msa1289920:intron | 15.0% |
| !! | CCCTATATATATATTTATAT+AGG | + | chr8_3:44421746-44421765 | None:intergenic | 15.0% |
| !!! | TCTTTAGATTATCTTTTTAT+CGG | - | chr8_3:44422079-44422098 | Msa1289920:CDS | 15.0% |
| !!! | CATAATAATAAAATTTTGTG+TGG | + | chr8_3:44422979-44422998 | None:intergenic | 15.0% |
| !!! | AATAACATGATTTTAAATTG+TGG | - | chr8_3:44423015-44423034 | Msa1289920:intron | 15.0% |
| !!! | TTAACTTGTAAATAATACAT+AGG | + | chr8_3:44424476-44424495 | None:intergenic | 15.0% |
| !! | AAATGAAAGAAATATTAAGA+TGG | + | chr8_3:44424914-44424933 | None:intergenic | 15.0% |
| !! | TAAAAATTTGGTATGAATCT+TGG | - | chr8_3:44419695-44419714 | Msa1289920:three_prime_UTR | 20.0% |
| !!! | AAAGTGTTTATCATATGAAT+TGG | - | chr8_3:44420127-44420146 | Msa1289920:intron | 20.0% |
| !! | TGAAATAAATAAAAGGGATT+GGG | + | chr8_3:44420865-44420884 | None:intergenic | 20.0% |
| !! | ATATCTAGGTAATTTCTAAT+AGG | - | chr8_3:44421064-44421083 | Msa1289920:CDS | 20.0% |
| !! | TATCTAGGTAATTTCTAATA+GGG | - | chr8_3:44421065-44421084 | Msa1289920:CDS | 20.0% |
| !!! | TAAGCTTTAATTTACAACAA+TGG | + | chr8_3:44421213-44421232 | None:intergenic | 20.0% |
| !! | ATCAATAAAAAAAGTAGGAA+AGG | + | chr8_3:44421272-44421291 | None:intergenic | 20.0% |
| !! | ATTCAAATTAGTTAACTACA+TGG | - | chr8_3:44421408-44421427 | Msa1289920:intron | 20.0% |
| !! | TCAATATTTGACTATTGTTT+AGG | - | chr8_3:44421447-44421466 | Msa1289920:intron | 20.0% |
| !!! | ATATATTTGAGTTCATCTTA+TGG | - | chr8_3:44422108-44422127 | Msa1289920:intron | 20.0% |
| !!! | TCTTTTTAACCAAATAAACT+CGG | - | chr8_3:44422196-44422215 | Msa1289920:intron | 20.0% |
| !!! | ATAGAAAAGATTTTGTTTCA+AGG | - | chr8_3:44422300-44422319 | Msa1289920:intron | 20.0% |
| !!! | TCACTGTAATTTTTTGTTTT+AGG | - | chr8_3:44422840-44422859 | Msa1289920:intron | 20.0% |
| !!! | AAAATCATGTTATTTAGCTT+AGG | + | chr8_3:44423009-44423028 | None:intergenic | 20.0% |
| !!! | TTTAAAATTGCAAACAAATG+AGG | + | chr8_3:44423072-44423091 | None:intergenic | 20.0% |
| !! | TACATCAAATCAAGAAAAAT+TGG | + | chr8_3:44423202-44423221 | None:intergenic | 20.0% |
| !!! | AATTTTTCTTGATTTGATGT+AGG | - | chr8_3:44423201-44423220 | Msa1289920:intron | 20.0% |
| !! | TTTAAAAGTTTAGATCACTT+AGG | + | chr8_3:44423800-44423819 | None:intergenic | 20.0% |
| !!! | GTTTTTTTAAAGGAGTTTAT+AGG | - | chr8_3:44424509-44424528 | Msa1289920:intron | 20.0% |
| !! | ATGTTAATTATACCACAAAA+CGG | - | chr8_3:44424533-44424552 | Msa1289920:intron | 20.0% |
| !! | AAAGACAAAAAACGATAAAA+AGG | + | chr8_3:44424803-44424822 | None:intergenic | 20.0% |
| !!! | TAATTCTTTTCTTCATCTTT+TGG | - | chr8_3:44425123-44425142 | Msa1289920:intron | 20.0% |
| ! | AAATACTAGATCGATGAAAT+TGG | + | chr8_3:44419648-44419667 | None:intergenic | 25.0% |
| !!! | TGGTTGCTATAAATTTGTTT+TGG | - | chr8_3:44419749-44419768 | Msa1289920:CDS | 25.0% |
| !!! | GGTTGCTATAAATTTGTTTT+GGG | - | chr8_3:44419750-44419769 | Msa1289920:CDS | 25.0% |
| !!! | GATTTTTAGTACCATAAACA+AGG | - | chr8_3:44419772-44419791 | Msa1289920:intron | 25.0% |
| !! | TTTCAATAAGGGTTGATTAA+TGG | - | chr8_3:44419844-44419863 | Msa1289920:intron | 25.0% |
| !! | TTCAATAAGGGTTGATTAAT+GGG | - | chr8_3:44419845-44419864 | Msa1289920:intron | 25.0% |
| !!! | TTGATTAATGGGTTTGATTT+TGG | - | chr8_3:44419856-44419875 | Msa1289920:intron | 25.0% |
| !! | GAGTTTATTTGAGACTTAAA+TGG | - | chr8_3:44419946-44419965 | Msa1289920:CDS | 25.0% |
| ! | CATTCACATTATCATAACTT+TGG | + | chr8_3:44420081-44420100 | None:intergenic | 25.0% |
| ! | GAAATAAATAAAAGGGATTG+GGG | + | chr8_3:44420864-44420883 | None:intergenic | 25.0% |
| ! | CTGAAATAAATAAAAGGGAT+TGG | + | chr8_3:44420866-44420885 | None:intergenic | 25.0% |
| ! | ATCTAGGTAATTTCTAATAG+GGG | - | chr8_3:44421066-44421085 | Msa1289920:CDS | 25.0% |
| ! | AATTTACAACAATGGAAGAA+AGG | + | chr8_3:44421205-44421224 | None:intergenic | 25.0% |
| ! | GACAAGAAGATTATAATAGA+AGG | - | chr8_3:44421238-44421257 | Msa1289920:intron | 25.0% |
| ! | AGAAGATTATAATAGAAGGA+AGG | - | chr8_3:44421242-44421261 | Msa1289920:intron | 25.0% |
| ! | TGCTGATCAATAAAAAAAGT+AGG | + | chr8_3:44421277-44421296 | None:intergenic | 25.0% |
| !!! | TTTTTTTATTGATCAGCAAC+AGG | - | chr8_3:44421279-44421298 | Msa1289920:intron | 25.0% |
| ! | TTCACAACTTGAAATTGATT+TGG | - | chr8_3:44421303-44421322 | Msa1289920:intron | 25.0% |
| !! | TCACAACTTGAAATTGATTT+GGG | - | chr8_3:44421304-44421323 | Msa1289920:intron | 25.0% |
| !! | TATTTGCATCAATCTTTTGA+AGG | - | chr8_3:44421375-44421394 | Msa1289920:intron | 25.0% |
| ! | TTGACTATTGTTTAGGAATT+AGG | - | chr8_3:44421454-44421473 | Msa1289920:intron | 25.0% |
| ! | CTAACAAATGAATATTTGCT+CGG | + | chr8_3:44421964-44421983 | None:intergenic | 25.0% |
| !! | TTTTATCTTATACCAATCCT+AGG | - | chr8_3:44421996-44422015 | Msa1289920:intron | 25.0% |
| !!! | TTGGTTTTTTTTTCTTGGTT+TGG | + | chr8_3:44422137-44422156 | None:intergenic | 25.0% |
| !!! | ATGCTTTGGTTTTTTTTTCT+TGG | + | chr8_3:44422142-44422161 | None:intergenic | 25.0% |
| !!! | GCAAATTTTTCTAAGGATTT+TGG | + | chr8_3:44422167-44422186 | None:intergenic | 25.0% |
| !! | CAAAATCTTTTCTATCTTCA+AGG | + | chr8_3:44422295-44422314 | None:intergenic | 25.0% |
| !! | AAGTATAAATGACCTTTTTG+GGG | + | chr8_3:44422491-44422510 | None:intergenic | 25.0% |
| !! | GAAGTATAAATGACCTTTTT+GGG | + | chr8_3:44422492-44422511 | None:intergenic | 25.0% |
| !!! | AGAAGTATAAATGACCTTTT+TGG | + | chr8_3:44422493-44422512 | None:intergenic | 25.0% |
| ! | ATGGAGATTGCTTATAAAAA+CGG | - | chr8_3:44422649-44422668 | Msa1289920:CDS | 25.0% |
| !!! | TTGTTTTAGGTTTTTGTTAG+TGG | - | chr8_3:44422853-44422872 | Msa1289920:intron | 25.0% |
| ! | CATTTGTGAAATTGACAATA+TGG | - | chr8_3:44422936-44422955 | Msa1289920:intron | 25.0% |
| ! | AACAAATGAGGTTAACATTA+CGG | + | chr8_3:44423060-44423079 | None:intergenic | 25.0% |
| !!! | CAATTTTAAAAATCCTAACG+CGG | - | chr8_3:44423082-44423101 | Msa1289920:intron | 25.0% |
| !! | AATATTTTATATTGCGATCC+TGG | + | chr8_3:44423114-44423133 | None:intergenic | 25.0% |
| !! | TATTGACTAAATTATCTTGC+TGG | - | chr8_3:44423130-44423149 | Msa1289920:intron | 25.0% |
| ! | TTAAACACAGATATTAGTGT+AGG | + | chr8_3:44423437-44423456 | None:intergenic | 25.0% |
| ! | GTAAAAAATCTTTACACTGA+TGG | - | chr8_3:44423582-44423601 | Msa1289920:intron | 25.0% |
| !! | AAAAAAATGGCTTTTCGAAA+AGG | + | chr8_3:44423847-44423866 | None:intergenic | 25.0% |
| ! | TTTAAAAATCTGACGACAAT+TGG | + | chr8_3:44423964-44423983 | None:intergenic | 25.0% |
| !! | AATTGTCGTCAGATTTTTAA+AGG | - | chr8_3:44423963-44423982 | Msa1289920:intron | 25.0% |
| ! | AGATTACAAAAACATACCTT+TGG | + | chr8_3:44424026-44424045 | None:intergenic | 25.0% |
| !! | ATGTTTATATCGTGGATTTT+TGG | + | chr8_3:44424195-44424214 | None:intergenic | 25.0% |
| ! | AAAAATCCACGATATAAACA+TGG | - | chr8_3:44424194-44424213 | Msa1289920:intron | 25.0% |
| ! | TACCATCATTAAAAAAACAC+AGG | + | chr8_3:44424444-44424463 | None:intergenic | 25.0% |
| !!! | GTGTTTTTTTAATGATGGTA+AGG | - | chr8_3:44424444-44424463 | Msa1289920:intron | 25.0% |
| !!! | GAGGAGATTTTAATTTCATA+TGG | + | chr8_3:44424559-44424578 | None:intergenic | 25.0% |
| ! | TTGTATTAAATAGCCTATCT+TGG | - | chr8_3:44424693-44424712 | Msa1289920:intron | 25.0% |
| !! | AATCAGTAATTTTCCAAGAT+AGG | + | chr8_3:44424709-44424728 | None:intergenic | 25.0% |
| ! | TTTCATTATAGTGTGATGAT+TGG | - | chr8_3:44424934-44424953 | Msa1289920:intron | 25.0% |
| !! | AGAATCTTCTCAATTTTCTT+TGG | + | chr8_3:44425235-44425254 | None:intergenic | 25.0% |
| !! | ATTCATATCTTTTACTCGAT+TGG | - | chr8_3:44425295-44425314 | Msa1289920:intron | 25.0% |
| AAATTTGGTATGAATCTTGG+AGG | - | chr8_3:44419698-44419717 | Msa1289920:three_prime_UTR | 30.0% | |
| ATTGTAGTTAAGATGTAGTG+TGG | - | chr8_3:44419729-44419748 | Msa1289920:CDS | 30.0% | |
| ! | ACAAAACAACACCTTGTTTA+TGG | + | chr8_3:44419786-44419805 | None:intergenic | 30.0% |
| !!! | AAACAAGGTGTTGTTTTGTT+TGG | - | chr8_3:44419787-44419806 | Msa1289920:intron | 30.0% |
| ! | TGAAGTTTATCTTGGCATTT+TGG | - | chr8_3:44419820-44419839 | Msa1289920:intron | 30.0% |
| !! | ATTATCGTTTTTCCGCAAAA+CGG | + | chr8_3:44419915-44419934 | None:intergenic | 30.0% |
| ACTTTAACTCAATACAAACG+AGG | - | chr8_3:44420042-44420061 | Msa1289920:intron | 30.0% | |
| !! | CAATACAAACGAGGTTTTAA+TGG | - | chr8_3:44420051-44420070 | Msa1289920:intron | 30.0% |
| TAGCAATAAAATGCTAAGCA+AGG | - | chr8_3:44420153-44420172 | Msa1289920:intron | 30.0% | |
| AAGAGATAATGTAACCTATG+AGG | - | chr8_3:44420299-44420318 | Msa1289920:intron | 30.0% | |
| ATAATGTAACCTATGAGGTA+CGG | - | chr8_3:44420304-44420323 | Msa1289920:intron | 30.0% | |
| ACATTATCTCTTCGTTCAAA+CGG | + | chr8_3:44420355-44420374 | None:intergenic | 30.0% | |
| !! | CACAACTTGAAATTGATTTG+GGG | - | chr8_3:44421305-44421324 | Msa1289920:intron | 30.0% |
| AGATTGATGCAAATACCTAT+AGG | + | chr8_3:44421370-44421389 | None:intergenic | 30.0% | |
| ATTGTTTAGGAATTAGGACT+AGG | - | chr8_3:44421460-44421479 | Msa1289920:intron | 30.0% | |
| ! | TTTGTAAGTATCGTACAGAA+GGG | - | chr8_3:44421543-44421562 | Msa1289920:intron | 30.0% |
| CATTAAATAAGAGTTCTCAC+CGG | - | chr8_3:44421712-44421731 | Msa1289920:intron | 30.0% | |
| ! | GATTATCTTTTTATCGGCAA+TGG | - | chr8_3:44422085-44422104 | Msa1289920:intron | 30.0% |
| ! | ACTGTGTGCAAATTTTTCTA+AGG | + | chr8_3:44422174-44422193 | None:intergenic | 30.0% |
| AACCAAATAAACTCGGTTAT+TGG | - | chr8_3:44422203-44422222 | Msa1289920:intron | 30.0% | |
| ATCCAATAACCGAGTTTATT+TGG | + | chr8_3:44422208-44422227 | None:intergenic | 30.0% | |
| GTCAAATTACCAGAAATTCA+TGG | - | chr8_3:44422326-44422345 | Msa1289920:intron | 30.0% | |
| AGGTTGTTAGAGAAAACTTA+TGG | - | chr8_3:44422630-44422649 | Msa1289920:CDS | 30.0% | |
| ! | ATTGAGTTGTTTATCCAAAC+TGG | - | chr8_3:44422747-44422766 | Msa1289920:intron | 30.0% |
| ATATAGACATAAGTCCAGTT+TGG | + | chr8_3:44422764-44422783 | None:intergenic | 30.0% | |
| !!! | TTTTAGGTTTTTGTTAGTGG+TGG | - | chr8_3:44422856-44422875 | Msa1289920:intron | 30.0% |
| ! | GATGTAGGATTTTCTACTTA+AGG | - | chr8_3:44423216-44423235 | Msa1289920:intron | 30.0% |
| AAAGTATAGTCTCTATTGCT+CGG | - | chr8_3:44423280-44423299 | Msa1289920:intron | 30.0% | |
| AACTTCAGGGAAAAATTGTT+TGG | + | chr8_3:44423359-44423378 | None:intergenic | 30.0% | |
| GTCACATCATTAAAAATGCT+TGG | + | chr8_3:44423542-44423561 | None:intergenic | 30.0% | |
| AAGAACATGACTTCTTAATG+AGG | + | chr8_3:44423640-44423659 | None:intergenic | 30.0% | |
| !!! | TCTAGGAGTTGCATTTTTTA+AGG | - | chr8_3:44423685-44423704 | Msa1289920:intron | 30.0% |
| ! | TGAAAGTATATGGCTTCATA+TGG | - | chr8_3:44423917-44423936 | Msa1289920:intron | 30.0% |
| GCTTCATATGGATATAATTG+AGG | - | chr8_3:44423929-44423948 | Msa1289920:intron | 30.0% | |
| AAACATACCTTTGGATATGT+AGG | + | chr8_3:44424017-44424036 | None:intergenic | 30.0% | |
| CAAGATTTCTCTTCTCAAAT+AGG | + | chr8_3:44424054-44424073 | None:intergenic | 30.0% | |
| CTATTTGAGAAGAGAAATCT+TGG | - | chr8_3:44424052-44424071 | Msa1289920:intron | 30.0% | |
| ACATGTTCAAGTCATAGAAT+CGG | - | chr8_3:44424086-44424105 | Msa1289920:intron | 30.0% | |
| ! | CATTTTCAAACATTTGCAAG+AGG | + | chr8_3:44424112-44424131 | None:intergenic | 30.0% |
| AAGATAAGAATGTCCACAAT+AGG | - | chr8_3:44424134-44424153 | Msa1289920:intron | 30.0% | |
| TTAACACCATGTTTATATCG+TGG | + | chr8_3:44424203-44424222 | None:intergenic | 30.0% | |
| ! | AACATGGTGTTAATGTGTTA+CGG | - | chr8_3:44424210-44424229 | Msa1289920:intron | 30.0% |
| ! | TAACATACCCTTTTCCAAAA+CGG | - | chr8_3:44424325-44424344 | Msa1289920:intron | 30.0% |
| !!! | CTCCTGTGTTTTTTTAATGA+TGG | - | chr8_3:44424439-44424458 | Msa1289920:intron | 30.0% |
| GTTATAGAATTAACGTGTAG+TGG | + | chr8_3:44424650-44424669 | None:intergenic | 30.0% | |
| ! | TTTTTGTCTTTACTTCCTCT+AGG | - | chr8_3:44424812-44424831 | Msa1289920:intron | 30.0% |
| ! | TATACTACTCTTTTGTGTAG+AGG | - | chr8_3:44424867-44424886 | Msa1289920:intron | 30.0% |
| !!! | TGATGATTGGTTTTATGCTT+TGG | - | chr8_3:44424947-44424966 | Msa1289920:intron | 30.0% |
| !!! | TGACATTCTTTTTCAACCAT+AGG | + | chr8_3:44425015-44425034 | None:intergenic | 30.0% |
| AAAGAGAGAAATGCAAAAGA+TGG | + | chr8_3:44425089-44425108 | None:intergenic | 30.0% | |
| CGAGTAAAAGATATGAATGA+TGG | + | chr8_3:44425293-44425312 | None:intergenic | 30.0% | |
| !!! | TGTTGTTTTGTTTGGTAGAG+TGG | - | chr8_3:44419795-44419814 | Msa1289920:intron | 35.0% |
| GAGTGGAATGAAGTTTATCT+TGG | - | chr8_3:44419812-44419831 | Msa1289920:intron | 35.0% | |
| !!! | TGGCATTTTGGCTTTCAATA+AGG | - | chr8_3:44419832-44419851 | Msa1289920:intron | 35.0% |
| !!! | GGCATTTTGGCTTTCAATAA+GGG | - | chr8_3:44419833-44419852 | Msa1289920:intron | 35.0% |
| AGGGAGAGTTAACTAACTAA+AGG | + | chr8_3:44419983-44420002 | None:intergenic | 35.0% | |
| TAGTTAGTTAACTCTCCCTT+TGG | - | chr8_3:44419984-44420003 | Msa1289920:CDS | 35.0% | |
| AGTTAGTTAACTCTCCCTTT+GGG | - | chr8_3:44419985-44420004 | Msa1289920:CDS | 35.0% | |
| CATGATTCAAACTACCCAAA+GGG | + | chr8_3:44420002-44420021 | None:intergenic | 35.0% | |
| ACATGATTCAAACTACCCAA+AGG | + | chr8_3:44420003-44420022 | None:intergenic | 35.0% | |
| TATCTCTTCGTTGTAGCAAA+TGG | + | chr8_3:44420287-44420306 | None:intergenic | 35.0% | |
| AAGAGATAATGTAGCCTATG+AGG | - | chr8_3:44420363-44420382 | Msa1289920:intron | 35.0% | |
| TACTATTAGTCGTACCTCAT+AGG | + | chr8_3:44420380-44420399 | None:intergenic | 35.0% | |
| AAGAGATAATGTAGCCTATG+AGG | - | chr8_3:44420363-44420382 | Msa1289920:intron | 35.0% | |
| TACTATGAGTTGTACCTCAT+AGG | + | chr8_3:44420448-44420467 | None:intergenic | 35.0% | |
| AACAAATGCAAAAACACCGT+TGG | - | chr8_3:44420467-44420486 | Msa1289920:intron | 35.0% | |
| ! | ATAACGTAGCCTTTGAGTTA+CGG | - | chr8_3:44420503-44420522 | Msa1289920:intron | 35.0% |
| AAGAGATAACGTGGTCTATA+TGG | - | chr8_3:44420567-44420586 | Msa1289920:intron | 35.0% | |
| TTCGAACATATGACAATCCT+AGG | - | chr8_3:44420780-44420799 | Msa1289920:intron | 35.0% | |
| CAGGTTATTAGACGACATAA+TGG | - | chr8_3:44420891-44420910 | Msa1289920:intron | 35.0% | |
| CCACTGATGTGAACTTTATA+TGG | + | chr8_3:44420937-44420956 | None:intergenic | 35.0% | |
| CCATATAAAGTTCACATCAG+TGG | - | chr8_3:44420934-44420953 | Msa1289920:intron | 35.0% | |
| TCTAGCATGTGTGTTAAACT+TGG | + | chr8_3:44421043-44421062 | None:intergenic | 35.0% | |
| CACACATGCTAGATATATCT+AGG | - | chr8_3:44421050-44421069 | Msa1289920:CDS | 35.0% | |
| ! | AAAAAGTGGAAACGATTTGG+TGG | + | chr8_3:44421153-44421172 | None:intergenic | 35.0% |
| GACAAAAAGTGGAAACGATT+TGG | + | chr8_3:44421156-44421175 | None:intergenic | 35.0% | |
| ATAAGCGGTTCAAACGAATA+GGG | + | chr8_3:44421181-44421200 | None:intergenic | 35.0% | |
| TATAAGCGGTTCAAACGAAT+AGG | + | chr8_3:44421182-44421201 | None:intergenic | 35.0% | |
| ! | CAATGGAAGAAAGGTATAAG+CGG | + | chr8_3:44421196-44421215 | None:intergenic | 35.0% |
| CTGTCTCATTTATTGCCTAT+AGG | - | chr8_3:44421352-44421371 | Msa1289920:intron | 35.0% | |
| !! | TGCATCAATCTTTTGAAGGT+TGG | - | chr8_3:44421379-44421398 | Msa1289920:intron | 35.0% |
| ! | GTTTGTAAGTATCGTACAGA+AGG | - | chr8_3:44421542-44421561 | Msa1289920:intron | 35.0% |
| ! | TTGTAAGTATCGTACAGAAG+GGG | - | chr8_3:44421544-44421563 | Msa1289920:intron | 35.0% |
| ! | ATTTATATAGGGAGCGTATC+CGG | + | chr8_3:44421734-44421753 | None:intergenic | 35.0% |
| TTTGCTTCTTTGATTGCACA+AGG | + | chr8_3:44421802-44421821 | None:intergenic | 35.0% | |
| AAGGAAGAAGGATTATATGG+TGG | + | chr8_3:44421837-44421856 | None:intergenic | 35.0% | |
| AGGAAGGAAGAAGGATTATA+TGG | + | chr8_3:44421840-44421859 | None:intergenic | 35.0% | |
| CATACTTATAGGAAGGAAGA+AGG | + | chr8_3:44421849-44421868 | None:intergenic | 35.0% | |
| CTTCTTCCTTCCTATAAGTA+TGG | - | chr8_3:44421847-44421866 | Msa1289920:intron | 35.0% | |
| CATACTCCATACTTATAGGA+AGG | + | chr8_3:44421856-44421875 | None:intergenic | 35.0% | |
| CTTCCTATAAGTATGGAGTA+TGG | - | chr8_3:44421854-44421873 | Msa1289920:intron | 35.0% | |
| CTTCCATACTCCATACTTAT+AGG | + | chr8_3:44421860-44421879 | None:intergenic | 35.0% | |
| CTATAAGTATGGAGTATGGA+AGG | - | chr8_3:44421858-44421877 | Msa1289920:intron | 35.0% | |
| CATGGAGATTTCTATGGTTA+AGG | - | chr8_3:44421881-44421900 | Msa1289920:intron | 35.0% | |
| GTAAACTAGACCAAAGACAA+TGG | + | chr8_3:44422023-44422042 | None:intergenic | 35.0% | |
| ! | TTGTCTTTGGTCTAGTTTAC+TGG | - | chr8_3:44422023-44422042 | Msa1289920:CDS | 35.0% |
| !! | TAAGGATTTTGGCAATGCTT+TGG | + | chr8_3:44422156-44422175 | None:intergenic | 35.0% |
| ! | AACTCCTGTTGTAATTTTGC+AGG | - | chr8_3:44422258-44422277 | Msa1289920:intron | 35.0% |
| TTGTCCTGCAAAATTACAAC+AGG | + | chr8_3:44422265-44422284 | None:intergenic | 35.0% | |
| !! | ATATGGCAAGGTTCTTGTTT+TGG | - | chr8_3:44422396-44422415 | Msa1289920:intron | 35.0% |
| !!! | TTGTTTTGGACTCACAGAAA+GGG | - | chr8_3:44422410-44422429 | Msa1289920:intron | 35.0% |
| ATGAGTGATCATTTCTTGGT+AGG | + | chr8_3:44422445-44422464 | None:intergenic | 35.0% | |
| GAAGATGAGTGATCATTTCT+TGG | + | chr8_3:44422449-44422468 | None:intergenic | 35.0% | |
| !! | CTCTATTTCTAACCCCAAAA+AGG | - | chr8_3:44422476-44422495 | Msa1289920:CDS | 35.0% |
| AAGTCATGTTCTTCTCATGA+TGG | - | chr8_3:44423647-44423666 | Msa1289920:intron | 35.0% | |
| ATCTTATGATGCAGTCATAG+TGG | - | chr8_3:44423721-44423740 | Msa1289920:intron | 35.0% | |
| ACACATGTAGCATACCAATA+GGG | + | chr8_3:44423756-44423775 | None:intergenic | 35.0% | |
| !!! | AAGCCATTTTTTTCAGTCAG+TGG | - | chr8_3:44423854-44423873 | Msa1289920:intron | 35.0% |
| ! | TTGCCACTGACTGAAAAAAA+TGG | + | chr8_3:44423860-44423879 | None:intergenic | 35.0% |
| !!! | ATTTTTTTCAGTCAGTGGCA+AGG | - | chr8_3:44423859-44423878 | Msa1289920:intron | 35.0% |
| !!! | TTTTTTTCAGTCAGTGGCAA+GGG | - | chr8_3:44423860-44423879 | Msa1289920:intron | 35.0% |
| ! | TCCACAATAGGTGTTATCAA+TGG | - | chr8_3:44424146-44424165 | Msa1289920:intron | 35.0% |
| ! | TAGGTGTTATCAATGGCAAA+TGG | - | chr8_3:44424153-44424172 | Msa1289920:intron | 35.0% |
| TGTTAATGTGTTACGGTCTA+TGG | - | chr8_3:44424217-44424236 | Msa1289920:intron | 35.0% | |
| !!! | ATTTTTTTACCAGGTGCCAT+AGG | + | chr8_3:44424264-44424283 | None:intergenic | 35.0% |
| AAAATACGCCATGCCATAAA+TGG | - | chr8_3:44424279-44424298 | Msa1289920:intron | 35.0% | |
| TGTCAAATTGCCACCATTTA+TGG | + | chr8_3:44424295-44424314 | None:intergenic | 35.0% | |
| ! | AACATACCCTTTTCCAAAAC+GGG | - | chr8_3:44424326-44424345 | Msa1289920:intron | 35.0% |
| !! | AATTTCATATGGCCGTTTTG+TGG | + | chr8_3:44424548-44424567 | None:intergenic | 35.0% |
| AAGCACTAGTATTGCATACT+GGG | + | chr8_3:44424741-44424760 | None:intergenic | 35.0% | |
| ! | AAAGCACTAGTATTGCATAC+TGG | + | chr8_3:44424742-44424761 | None:intergenic | 35.0% |
| AACGATAAAAAGGCAACAAG+AGG | + | chr8_3:44424793-44424812 | None:intergenic | 35.0% | |
| ! | TTTTATGCTTTGGTCAACTG+AGG | - | chr8_3:44424957-44424976 | Msa1289920:intron | 35.0% |
| TTTATGCTTTGGTCAACTGA+GGG | - | chr8_3:44424958-44424977 | Msa1289920:intron | 35.0% | |
| ! | TTTTCAACCATAGGATTCAC+TGG | + | chr8_3:44425006-44425025 | None:intergenic | 35.0% |
| TCAGAGTTGTAGAATTTGAG+AGG | + | chr8_3:44425051-44425070 | None:intergenic | 35.0% | |
| TCTCAAATTCTACAACTCTG+AGG | - | chr8_3:44425050-44425069 | Msa1289920:intron | 35.0% | |
| AGAGAAATGCAAAAGATGGT+TGG | + | chr8_3:44425085-44425104 | None:intergenic | 35.0% | |
| TTCCGCAAAACGGTTTATTG+CGG | + | chr8_3:44419905-44419924 | None:intergenic | 40.0% | |
| TATCTCTTCGTTGTAGCCAA+CGG | + | chr8_3:44420486-44420505 | None:intergenic | 40.0% | |
| TACTATGAGCCGTAACTCAA+AGG | + | chr8_3:44420515-44420534 | None:intergenic | 40.0% | |
| ACCACGTTATCTCTTCGTTA+TGG | + | chr8_3:44420562-44420581 | None:intergenic | 40.0% | |
| ATACATAACTGAGCGATCGA+GGG | + | chr8_3:44420726-44420745 | None:intergenic | 40.0% | |
| CTAGGTTGTAGTCAATCTCA+GGG | + | chr8_3:44420808-44420827 | None:intergenic | 40.0% | |
| GATTGACTACAACCTAGGAT+AGG | - | chr8_3:44420811-44420830 | Msa1289920:intron | 40.0% | |
| CGAATAGGGAAGACAAAAAG+TGG | + | chr8_3:44421167-44421186 | None:intergenic | 40.0% | |
| ACCCATACAATGCTTAGATC+TGG | - | chr8_3:44421494-44421513 | Msa1289920:intron | 40.0% | |
| ! | GCCAGATCTAAGCATTGTAT+GGG | + | chr8_3:44421498-44421517 | None:intergenic | 40.0% |
| CATACAATGCTTAGATCTGG+CGG | - | chr8_3:44421497-44421516 | Msa1289920:intron | 40.0% | |
| TGCTATGAAACAAAGACGTG+CGG | - | chr8_3:44421520-44421539 | Msa1289920:intron | 40.0% | |
| TACAGAAGGGGATGTCAATA+GGG | - | chr8_3:44421556-44421575 | Msa1289920:intron | 40.0% | |
| GGGTGATGCAATACAGTAAA+AGG | - | chr8_3:44421765-44421784 | Msa1289920:intron | 40.0% | |
| TCTTTGATTGCACAAGGTGT+TGG | + | chr8_3:44421796-44421815 | None:intergenic | 40.0% | |
| GAAGGATTATATGGTGGTCA+TGG | + | chr8_3:44421831-44421850 | None:intergenic | 40.0% | |
| AAAGACAATGGTCCTAGGAT+TGG | + | chr8_3:44422011-44422030 | None:intergenic | 40.0% | |
| AATCCTAGGACCATTGTCTT+TGG | - | chr8_3:44422010-44422029 | Msa1289920:CDS | 40.0% | |
| CAAGGAAGACCATGAATTTC+TGG | + | chr8_3:44422338-44422357 | None:intergenic | 40.0% | |
| !! | TCATGGTGTTACAACTTGCA+AGG | + | chr8_3:44422356-44422375 | None:intergenic | 40.0% |
| CTTCTGCAGTCATCAACATA+TGG | - | chr8_3:44422379-44422398 | Msa1289920:intron | 40.0% | |
| !!! | CTTGTTTTGGACTCACAGAA+AGG | - | chr8_3:44422409-44422428 | Msa1289920:intron | 40.0% |
| GGGTTAGAAATAGAGCAAAG+AGG | + | chr8_3:44422471-44422490 | None:intergenic | 40.0% | |
| GTCTGTTTGAGCTTATTTGC+TGG | - | chr8_3:44422593-44422612 | Msa1289920:CDS | 40.0% | |
| ! | TTTGTTAGTGGTGGAGTTGA+TGG | - | chr8_3:44422865-44422884 | Msa1289920:intron | 40.0% |
| GTGGTTCACAACTATGATTG+CGG | - | chr8_3:44423034-44423053 | Msa1289920:intron | 40.0% | |
| ! | TTTTTCCCTGAAGTTGCAGT+AGG | - | chr8_3:44423364-44423383 | Msa1289920:intron | 40.0% |
| ! | TTTTCCCTGAAGTTGCAGTA+GGG | - | chr8_3:44423365-44423384 | Msa1289920:intron | 40.0% |
| TAAACCCTACTGCAACTTCA+GGG | + | chr8_3:44423372-44423391 | None:intergenic | 40.0% | |
| TTAAACCCTACTGCAACTTC+AGG | + | chr8_3:44423373-44423392 | None:intergenic | 40.0% | |
| ! | CATGATGGCTTTTCTCACAA+TGG | - | chr8_3:44423662-44423681 | Msa1289920:intron | 40.0% |
| !!! | TTTTTTAAGGCAGCTCCAGA+AGG | - | chr8_3:44423698-44423717 | Msa1289920:intron | 40.0% |
| ACTGCATCATAAGATCCTTC+TGG | + | chr8_3:44423716-44423735 | None:intergenic | 40.0% | |
| !! | AGTGGATTATCTGACCCTAT+TGG | - | chr8_3:44423739-44423758 | Msa1289920:intron | 40.0% |
| CACACATGTAGCATACCAAT+AGG | + | chr8_3:44423757-44423776 | None:intergenic | 40.0% | |
| AAGGCTCTGTCAATTATGCT+TGG | - | chr8_3:44423982-44424001 | Msa1289920:intron | 40.0% | |
| TACAGCTCCTACATATCCAA+AGG | - | chr8_3:44424007-44424026 | Msa1289920:intron | 40.0% | |
| ! | GCCATTGATAACACCTATTG+TGG | + | chr8_3:44424150-44424169 | None:intergenic | 40.0% |
| GTGTTATCAATGGCAAATGG+CGG | - | chr8_3:44424156-44424175 | Msa1289920:intron | 40.0% | |
| TGTTATCAATGGCAAATGGC+GGG | - | chr8_3:44424157-44424176 | Msa1289920:intron | 40.0% | |
| GGTCTATGGCAGATACAATA+GGG | - | chr8_3:44424231-44424250 | Msa1289920:intron | 40.0% | |
| GTCTATGGCAGATACAATAG+GGG | - | chr8_3:44424232-44424251 | Msa1289920:intron | 40.0% | |
| !!! | GCATGGCGTATTTTTTTACC+AGG | + | chr8_3:44424273-44424292 | None:intergenic | 40.0% |
| AATTGCCACCATTTATGGCA+TGG | + | chr8_3:44424290-44424309 | None:intergenic | 40.0% | |
| ATATAGCTCCGACCATATCA+GGG | + | chr8_3:44424368-44424387 | None:intergenic | 40.0% | |
| TATATAGCTCCGACCATATC+AGG | + | chr8_3:44424369-44424388 | None:intergenic | 40.0% | |
| ! | TTTCCTGTTTGAGTTCTGCT+AGG | - | chr8_3:44424412-44424431 | Msa1289920:intron | 40.0% |
| ATACCTAGCAGAACTCAAAC+AGG | + | chr8_3:44424418-44424437 | None:intergenic | 40.0% | |
| CGATTCACAATTGACAACAC+CGG | + | chr8_3:44424602-44424621 | None:intergenic | 40.0% | |
| TTGTCAATTGTGAATCGCAG+AGG | - | chr8_3:44424605-44424624 | Msa1289920:intron | 40.0% | |
| TTGTCTTTACTTCCTCTAGG+AGG | - | chr8_3:44424815-44424834 | Msa1289920:intron | 40.0% | |
| GGATGCTTGAAATCAACAAG+AGG | + | chr8_3:44424985-44425004 | None:intergenic | 40.0% | |
| ! | CAGTATGAATCTGGGATTGA+AGG | + | chr8_3:44425170-44425189 | None:intergenic | 40.0% |
| GAAAGCTGCAGTATGAATCT+GGG | + | chr8_3:44425178-44425197 | None:intergenic | 40.0% | |
| AGAAAGCTGCAGTATGAATC+TGG | + | chr8_3:44425179-44425198 | None:intergenic | 40.0% | |
| ! | CTCGATTGGTCATCTATCAA+CGG | - | chr8_3:44425309-44425328 | Msa1289920:intron | 40.0% |
| TTAGGCACCAACTTATTCCA+TGG | + | chr8_3:44425336-44425355 | None:intergenic | 40.0% | |
| AAGAGGGTTAGGAGGAGATT+TGG | - | chr8_3:44419604-44419623 | Msa1289920:three_prime_UTR | 45.0% | |
| AGAGGGTTAGGAGGAGATTT+GGG | - | chr8_3:44419605-44419624 | Msa1289920:three_prime_UTR | 45.0% | |
| ! | AGCCGCAATAAACCGTTTTG+CGG | - | chr8_3:44419900-44419919 | Msa1289920:CDS | 45.0% |
| TACTATGAGCCGTACCTCAT+AGG | + | chr8_3:44420316-44420335 | None:intergenic | 45.0% | |
| GCCATAACGAAGAGATAACG+TGG | - | chr8_3:44420558-44420577 | Msa1289920:intron | 45.0% | |
| CATACATAACTGAGCGATCG+AGG | + | chr8_3:44420727-44420746 | None:intergenic | 45.0% | |
| TAGTCAATCTCAGGGAACCT+AGG | + | chr8_3:44420800-44420819 | None:intergenic | 45.0% | |
| CCTAGGTTGTAGTCAATCTC+AGG | + | chr8_3:44420809-44420828 | None:intergenic | 45.0% | |
| CCTGAGATTGACTACAACCT+AGG | - | chr8_3:44420806-44420825 | Msa1289920:intron | 45.0% | |
| TGACTACAACCTAGGATAGG+TGG | - | chr8_3:44420814-44420833 | Msa1289920:intron | 45.0% | |
| !! | AGTGGAAACGATTTGGTGGA+CGG | + | chr8_3:44421149-44421168 | None:intergenic | 45.0% |
| ! | CGCCAGATCTAAGCATTGTA+TGG | + | chr8_3:44421499-44421518 | None:intergenic | 45.0% |
| GTACAGAAGGGGATGTCAAT+AGG | - | chr8_3:44421555-44421574 | Msa1289920:intron | 45.0% | |
| AGGCAAGAGGGAAAATTGAG+TGG | - | chr8_3:44421601-44421620 | Msa1289920:intron | 45.0% | |
| CAAGAGGGAAAATTGAGTGG+AGG | - | chr8_3:44421604-44421623 | Msa1289920:intron | 45.0% | |
| AGTATGGAGTATGGAAGGCA+TGG | - | chr8_3:44421863-44421882 | Msa1289920:intron | 45.0% | |
| ! | GGAAGGCATGGAGATTTCTA+TGG | - | chr8_3:44421875-44421894 | Msa1289920:intron | 45.0% |
| AGACCAAAGACAATGGTCCT+AGG | + | chr8_3:44422016-44422035 | None:intergenic | 45.0% | |
| GATGACTGCAGAAGACATCA+TGG | + | chr8_3:44422373-44422392 | None:intergenic | 45.0% | |
| GCAGTCATCAACATATGGCA+AGG | - | chr8_3:44422384-44422403 | Msa1289920:intron | 45.0% | |
| !! | AATGACGTGCTACTTCTTGC+AGG | + | chr8_3:44422897-44422916 | None:intergenic | 45.0% |
| ! | TCGTAGTCTTGACTTTGTGC+AGG | - | chr8_3:44423330-44423349 | Msa1289920:intron | 45.0% |
| CTTCTACAGTCACACATGCT+TGG | + | chr8_3:44423504-44423523 | None:intergenic | 45.0% | |
| ! | GGCTTTTCTCACAATGGTCT+AGG | - | chr8_3:44423668-44423687 | Msa1289920:intron | 45.0% |
| TGAGTGCACATAACTTCTCC+TGG | + | chr8_3:44423894-44423913 | None:intergenic | 45.0% | |
| AGGAGAAGTTATGTGCACTC+AGG | - | chr8_3:44423893-44423912 | Msa1289920:intron | 45.0% | |
| ! | GCACTCAGGCTGAAAGTATA+TGG | - | chr8_3:44423907-44423926 | Msa1289920:intron | 45.0% |
| CGGTCTATGGCAGATACAAT+AGG | - | chr8_3:44424230-44424249 | Msa1289920:intron | 45.0% | |
| ATACGCCATGCCATAAATGG+TGG | - | chr8_3:44424282-44424301 | Msa1289920:intron | 45.0% | |
| !!! | GTCAGACCCGTTTTGGAAAA+GGG | + | chr8_3:44424335-44424354 | None:intergenic | 45.0% |
| ! | TTACTTCCTCTAGGAGGTTC+AGG | - | chr8_3:44424821-44424840 | Msa1289920:intron | 45.0% |
| CTAAAACCTGAACCTCCTAG+AGG | + | chr8_3:44424830-44424849 | None:intergenic | 45.0% | |
| CAAGCATCCAGTGAATCCTA+TGG | - | chr8_3:44424996-44425015 | Msa1289920:intron | 45.0% | |
| ATCTTCCTCTTCGCAAACGA+CGG | + | chr8_3:44425207-44425226 | None:intergenic | 45.0% | |
| TCGTTTGCGAAGAGGAAGAT+TGG | - | chr8_3:44425207-44425226 | Msa1289920:intron | 45.0% | |
| ATAGCTCAAAGCAGCTCATG+TGG | - | chr8_3:44425257-44425276 | Msa1289920:intron | 45.0% | |
| CAACGGACCATGGAATAAGT+TGG | - | chr8_3:44425326-44425345 | Msa1289920:intron | 45.0% | |
| CAGTGAGTTCCACCTATCCT+AGG | + | chr8_3:44420826-44420845 | None:intergenic | 50.0% | |
| AAAAGGGATTGGGGTGAGAC+AGG | + | chr8_3:44420855-44420874 | None:intergenic | 50.0% | |
| !! | GTGGAAACGATTTGGTGGAC+GGG | + | chr8_3:44421148-44421167 | None:intergenic | 50.0% |
| GGGGATGTCAATAGGGTTGA+CGG | - | chr8_3:44421563-44421582 | Msa1289920:intron | 50.0% | |
| TAGGGTTGACGGAGTGATAG+TGG | - | chr8_3:44421574-44421593 | Msa1289920:intron | 50.0% | |
| !! | GTTGACGGAGTGATAGTGGA+AGG | - | chr8_3:44421578-44421597 | Msa1289920:intron | 50.0% |
| !! | TGATAGTGGAAGGAGGCAAG+AGG | - | chr8_3:44421588-44421607 | Msa1289920:intron | 50.0% |
| !! | GATAGTGGAAGGAGGCAAGA+GGG | - | chr8_3:44421589-44421608 | Msa1289920:intron | 50.0% |
| TGCTGGCATAAACACTTGCG+AGG | - | chr8_3:44422610-44422629 | Msa1289920:CDS | 50.0% | |
| !! | GTTAGTGGTGGAGTTGATGG+TGG | - | chr8_3:44422868-44422887 | Msa1289920:intron | 50.0% |
| CCAATGCGAAGAGTCACATG+TGG | + | chr8_3:44423400-44423419 | None:intergenic | 50.0% | |
| CCACATGTGACTCTTCGCAT+TGG | - | chr8_3:44423397-44423416 | Msa1289920:intron | 50.0% | |
| ! | GTGACTCTTCGCATTGGTGA+TGG | - | chr8_3:44423403-44423422 | Msa1289920:intron | 50.0% |
| !! | CAATGGCAAATGGCGGGTTA+CGG | - | chr8_3:44424163-44424182 | Msa1289920:intron | 50.0% |
| !!! | GGTCAGACCCGTTTTGGAAA+AGG | + | chr8_3:44424336-44424355 | None:intergenic | 50.0% |
| TTGTGAATCGCAGAGGACAG+TGG | - | chr8_3:44424612-44424631 | Msa1289920:intron | 50.0% | |
| GGTCATCTATCAACGGACCA+TGG | - | chr8_3:44425316-44425335 | Msa1289920:intron | 50.0% | |
| CTGAGCGATCGAGGGTAACT+AGG | + | chr8_3:44420718-44420737 | None:intergenic | 55.0% | |
| !! | GACGGAGTGATAGTGGAAGG+AGG | - | chr8_3:44421581-44421600 | Msa1289920:intron | 55.0% |
| ACAATAGGGGCTGCGACCTA+TGG | - | chr8_3:44424245-44424264 | Msa1289920:intron | 55.0% | |
| ACCATATCAGGGTCCTCGGA+GGG | + | chr8_3:44424357-44424376 | None:intergenic | 55.0% | |
| TCCGAGGACCCTGATATGGT+CGG | - | chr8_3:44424357-44424376 | Msa1289920:intron | 55.0% | |
| TCCGACCATATCAGGGTCCT+CGG | + | chr8_3:44424361-44424380 | None:intergenic | 55.0% | |
| GTTTGCCGTCGTTTGCGAAG+AGG | - | chr8_3:44425199-44425218 | Msa1289920:intron | 55.0% | |
| ATCCTAACGCGGCTGTGACC+AGG | - | chr8_3:44423093-44423112 | Msa1289920:intron | 60.0% | |
| ATCCTGGTCACAGCCGCGTT+AGG | + | chr8_3:44423098-44423117 | None:intergenic | 60.0% | |
| GTGGCAAGGGCTCTTCTTCC+AGG | - | chr8_3:44423873-44423892 | Msa1289920:intron | 60.0% | |
| ! | TCGGAGGGTCAGACCCGTTT+TGG | + | chr8_3:44424342-44424361 | None:intergenic | 60.0% |
| AAAACGGGTCTGACCCTCCG+AGG | - | chr8_3:44424341-44424360 | Msa1289920:intron | 60.0% | |
| ACCCTCCGAGGACCCTGATA+TGG | - | chr8_3:44424353-44424372 | Msa1289920:intron | 60.0% | |
| GACCATATCAGGGTCCTCGG+AGG | + | chr8_3:44424358-44424377 | None:intergenic | 60.0% | |
| GGGCTGCGACCTATGGCACC+TGG | - | chr8_3:44424252-44424271 | Msa1289920:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 44419597 | 44425366 | 44419597 | ID=Msa1289920;Name=Msa1289920 |
| chr8_3 | mRNA | 44419597 | 44425366 | 44419597 | ID=Msa1289920-mRNA-1;Parent=Msa1289920;Name=Msa1289920-mRNA-1;_AED=0.21;_eAED=0.22;_QI=0|0.16|0.14|0.85|0.33|0.71|7|121|227 |
| chr8_3 | exon | 44419597 | 44419783 | 44419597 | ID=Msa1289920-mRNA-1:exon:12209;Parent=Msa1289920-mRNA-1 |
| chr8_3 | exon | 44419892 | 44420018 | 44419892 | ID=Msa1289920-mRNA-1:exon:12208;Parent=Msa1289920-mRNA-1 |
| chr8_3 | exon | 44420429 | 44420442 | 44420429 | ID=Msa1289920-mRNA-1:exon:12207;Parent=Msa1289920-mRNA-1 |
| chr8_3 | exon | 44420935 | 44421093 | 44420935 | ID=Msa1289920-mRNA-1:exon:12206;Parent=Msa1289920-mRNA-1 |
| chr8_3 | exon | 44422006 | 44422101 | 44422006 | ID=Msa1289920-mRNA-1:exon:12205;Parent=Msa1289920-mRNA-1 |
| chr8_3 | exon | 44422466 | 44422683 | 44422466 | ID=Msa1289920-mRNA-1:exon:12204;Parent=Msa1289920-mRNA-1 |
| chr8_3 | exon | 44425363 | 44425366 | 44425363 | ID=Msa1289920-mRNA-1:exon:12203;Parent=Msa1289920-mRNA-1 |
| chr8_3 | CDS | 44425363 | 44425366 | 44425363 | ID=Msa1289920-mRNA-1:cds;Parent=Msa1289920-mRNA-1 |
| chr8_3 | CDS | 44422466 | 44422683 | 44422466 | ID=Msa1289920-mRNA-1:cds;Parent=Msa1289920-mRNA-1 |
| chr8_3 | CDS | 44422006 | 44422101 | 44422006 | ID=Msa1289920-mRNA-1:cds;Parent=Msa1289920-mRNA-1 |
| chr8_3 | CDS | 44420935 | 44421093 | 44420935 | ID=Msa1289920-mRNA-1:cds;Parent=Msa1289920-mRNA-1 |
| chr8_3 | CDS | 44420429 | 44420442 | 44420429 | ID=Msa1289920-mRNA-1:cds;Parent=Msa1289920-mRNA-1 |
| chr8_3 | CDS | 44419892 | 44420018 | 44419892 | ID=Msa1289920-mRNA-1:cds;Parent=Msa1289920-mRNA-1 |
| chr8_3 | CDS | 44419718 | 44419783 | 44419718 | ID=Msa1289920-mRNA-1:cds;Parent=Msa1289920-mRNA-1 |
| chr8_3 | three_prime_UTR | 44419597 | 44419717 | 44419597 | ID=Msa1289920-mRNA-1:three_prime_utr;Parent=Msa1289920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
