AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1283860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1283860 MtrunA17_Chr8g0355661 92.258 155 11 1 1 155 1 154 2.39e-103 292
Msa1283860 MtrunA17_Chr8g0355721 78.289 152 33 0 1 152 1 152 1.71e-89 257
Msa1283860 MtrunA17_Chr8g0355741 79.355 155 32 0 1 155 1 155 2.25e-89 257
Msa1283860 MtrunA17_Chr8g0355811 74.839 155 38 1 1 155 1 154 2.37e-84 244
Msa1283860 MtrunA17_Chr8g0355821 71.613 155 43 1 1 155 1 154 1.32e-80 235
Msa1283860 MtrunA17_Chr8g0355781 71.053 152 44 0 1 152 1 152 2.14e-80 234
Msa1283860 MtrunA17_Chr8g0355791 74.194 155 39 1 1 155 1 154 3.40e-80 234
Msa1283860 MtrunA17_Chr8g0355801 72.903 155 41 1 1 155 1 154 4.05e-80 233
Msa1283860 MtrunA17_Chr8g0355771 72.903 155 41 1 1 155 1 154 1.72e-79 232
Msa1283860 MtrunA17_Chr8g0355761 70.395 152 45 0 1 152 1 152 1.54e-78 229
Msa1283860 MtrunA17_Chr8g0355641 69.032 155 48 0 1 155 1 155 1.82e-78 229
Msa1283860 MtrunA17_Chr1g0160381 37.255 153 93 2 1 151 5 156 1.09e-36 124
Msa1283860 MtrunA17_Chr1g0160371 38.562 153 91 2 1 151 1 152 4.37e-36 122
Msa1283860 MtrunA17_Chr1g0160391 36.943 157 89 5 1 149 1 155 6.05e-28 101
Msa1283860 MtrunA17_Chr8g0339261 33.793 145 93 3 6 149 8 150 1.22e-25 95.5
Msa1283860 MtrunA17_Chr1g0160801 37.162 148 84 5 7 152 7 147 2.87e-23 89.4
Msa1283860 MtrunA17_Chr1g0160351 39.785 93 54 1 61 151 1 93 3.54e-20 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1283860 AT5G28010.1 34.667 150 95 3 3 150 15 163 1.63e-26 98.6
Msa1283860 AT5G28010.2 34.667 150 95 3 3 150 15 163 1.63e-26 98.6
Msa1283860 AT1G70890.1 36.667 150 92 3 3 150 7 155 5.92e-25 94.4
Msa1283860 AT1G70840.1 34.667 150 95 3 3 150 20 168 1.08e-24 94.0
Msa1283860 AT1G70830.5 36.000 150 93 3 3 150 22 170 2.00e-24 93.2
Msa1283860 AT1G70830.3 36.000 150 93 3 3 150 22 170 4.17e-24 93.2
Msa1283860 AT1G70830.2 36.000 150 93 3 3 150 22 170 1.55e-23 92.8
Msa1283860 AT5G28000.1 35.099 151 93 5 3 150 13 161 2.80e-23 90.1
Msa1283860 AT1G70830.1 36.000 150 93 3 3 150 22 170 4.53e-23 93.2
Msa1283860 AT1G70830.1 34.667 150 95 3 3 150 184 332 1.70e-21 89.0
Msa1283860 AT1G70850.2 34.000 150 96 3 3 150 9 157 5.06e-22 88.6
Msa1283860 AT1G70830.4 34.667 150 95 3 3 150 137 285 5.69e-22 89.4
Msa1283860 AT1G70830.4 32.258 93 62 1 59 150 31 123 1.21e-11 61.2
Msa1283860 AT1G70850.3 34.000 150 96 3 3 150 9 157 1.37e-21 89.0
Msa1283860 AT1G70850.3 35.000 140 88 3 13 150 175 313 2.07e-20 85.9
Msa1283860 AT1G70850.1 34.000 150 96 3 3 150 9 157 1.37e-21 89.0
Msa1283860 AT1G70850.1 35.000 140 88 3 13 150 175 313 2.07e-20 85.9
Msa1283860 AT1G23130.1 28.859 149 104 2 3 150 10 157 1.66e-19 80.1
Msa1283860 AT1G70880.1 30.000 150 102 3 3 150 8 156 3.33e-18 77.0
Msa1283860 AT4G23670.1 32.026 153 101 3 1 152 1 151 3.99e-18 76.3
Msa1283860 AT1G23120.1 26.667 150 105 3 1 150 1 145 4.09e-18 76.3
Msa1283860 AT1G70870.1 38.542 96 58 1 56 151 44 138 4.61e-18 75.9
Msa1283860 AT1G23120.2 27.083 144 100 3 7 150 57 195 1.20e-17 76.3
Msa1283860 AT2G01520.1 28.758 153 106 3 1 152 1 151 2.96e-16 71.6
Msa1283860 AT1G14930.1 27.097 155 110 3 1 154 1 153 3.92e-16 71.2
Msa1283860 AT1G35260.1 28.082 146 101 3 7 150 6 149 1.83e-15 69.7
Msa1283860 AT4G14060.1 28.758 153 106 3 1 152 1 151 2.54e-15 69.3
Msa1283860 AT2G01530.1 29.412 153 105 3 1 152 1 151 2.67e-15 68.9
Msa1283860 AT1G30990.1 29.801 151 102 4 1 150 1 148 1.06e-14 67.4
Msa1283860 AT4G23680.1 27.632 152 107 3 1 151 1 150 1.60e-14 67.0
Msa1283860 AT1G35310.1 25.180 139 101 3 13 150 12 148 1.99e-13 64.3
Msa1283860 AT1G14940.1 26.452 155 111 3 1 154 1 153 2.63e-13 63.9
Msa1283860 AT1G14950.1 27.097 155 110 3 1 154 1 153 4.84e-13 63.2
Msa1283860 AT3G26450.1 28.571 154 106 4 1 152 1 152 5.46e-13 63.2
Msa1283860 AT1G24020.1 29.032 155 108 2 1 154 1 154 1.02e-12 62.4
Msa1283860 AT1G24020.2 29.032 155 108 2 1 154 1 154 1.02e-12 62.4

Find 36 sgRNAs with CRISPR-Local

Find 133 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAATGAAATTTCTATTTAT+AGG 0.230908 8_3:+25684633 Msa1283860:five_prime_UTR
ATCTTCACCTTCATGAAGTT+TGG 0.292428 8_3:-25684868 None:intergenic
ATGTGATGCAAATCAATAAA+TGG 0.304656 8_3:+25686127 Msa1283860:three_prime_UTR
CATTCAGAAATGGTGCTTGC+TGG 0.314757 8_3:+25684738 Msa1283860:exon
AATGGCTGGATGGACTTATT+AGG 0.352875 8_3:+25685903 Msa1283860:CDS
GAGGATATTGACCCACAAAA+TGG 0.375145 8_3:+25685885 Msa1283860:CDS
AAATTTCTATTTATAGGCAT+GGG 0.424875 8_3:+25684639 Msa1283860:five_prime_UTR
GAAATAGAAGAAAGAAACTA+GGG 0.428379 8_3:-25684687 None:intergenic
AAAATAACTTTCAAGCTCTT+CGG 0.428417 8_3:+25685753 Msa1283860:CDS
TAGGGTTGATATGATGAAAC+TGG 0.435781 8_3:-25684669 None:intergenic
ATCATTGAAGTAATTGATAA+TGG 0.436398 8_3:+25685813 Msa1283860:CDS
ATGGCAGTGGAGCTGCAAAA+TGG 0.452179 8_3:+25685838 Msa1283860:CDS
TGATCTTAGTTTGAATGTGC+TGG 0.474089 8_3:+25686083 Msa1283860:three_prime_UTR
AGAAATAGAAGAAAGAAACT+AGG 0.481456 8_3:-25684688 None:intergenic
GAAATTTCTATTTATAGGCA+TGG 0.485297 8_3:+25684638 Msa1283860:five_prime_UTR
AAACACTGGACTTATGTCAT+AGG 0.490184 8_3:+25684912 Msa1283860:CDS
AACTTCATGAAGGTGAAGAT+TGG 0.494334 8_3:+25684871 Msa1283860:CDS
AGACATTGATGAGCACTATA+AGG 0.495099 8_3:+25685779 Msa1283860:CDS
GGCAAACTTAGTACTGAACT+TGG 0.496054 8_3:+25684759 Msa1283860:CDS
ATGTGTTCGTAATAGCATAA+TGG 0.510903 8_3:+25686053 Msa1283860:three_prime_UTR
AGTTTGAAGAACTTGTCAAC+GGG 0.511180 8_3:-25684792 None:intergenic
AAAGAAAGTAACAAATATGA+TGG 0.511553 8_3:+25685991 Msa1283860:three_prime_UTR
ATATTGACCCACAAAATGGC+TGG 0.543324 8_3:+25685889 Msa1283860:CDS
ATAACTTTCAAGCTCTTCGG+TGG 0.552870 8_3:+25685756 Msa1283860:CDS
ATTGATAATGGTGATGGCAG+TGG 0.556824 8_3:+25685825 Msa1283860:CDS
ATTGATCTTCTCATATTCAA+CGG 0.576809 8_3:-25685862 None:intergenic
GTTGATGCTCATCTTGTCAA+AGG 0.591021 8_3:+25685942 Msa1283860:CDS
CATCATGCCAAACTTCATGA+AGG 0.593864 8_3:+25684861 Msa1283860:CDS
TGACCCACAAAATGGCTGGA+TGG 0.599535 8_3:+25685893 Msa1283860:CDS
TAGTTTGAAGAACTTGTCAA+CGG 0.601012 8_3:-25684793 None:intergenic
TGACATCACAATAGATGGCA+AGG 0.606404 8_3:+25685683 Msa1283860:intron
AATTTCTATTTATAGGCATG+GGG 0.609757 8_3:+25684640 Msa1283860:five_prime_UTR
GAAGTAATTGATAATGGTGA+TGG 0.618480 8_3:+25685819 Msa1283860:CDS
ACACTGATTCAGTTAAACAC+TGG 0.620261 8_3:+25684898 Msa1283860:CDS
GCAAACTTAGTACTGAACTT+GGG 0.637274 8_3:+25684760 Msa1283860:CDS
TGAATATGAGAAGATCAATG+AGG 0.699788 8_3:+25685866 Msa1283860:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATACATTGTTTTAATTTAAT+TGG + chr8_3:25685647-25685666 Msa1283860:intron 10.0%
!!! ATACATTGTTTTAATTTAAT+TGG + chr8_3:25685647-25685666 Msa1283860:intron 10.0%
!! GTAATGAAATTTCTATTTAT+AGG + chr8_3:25684633-25684652 Msa1283860:five_prime_UTR 15.0%
!!! TTTTTTTTTTCATTCAGAAA+TGG + chr8_3:25684728-25684747 Msa1283860:exon 15.0%
!! GTATAGTTATGAAAAATATA+TGG - chr8_3:25685627-25685646 None:intergenic 15.0%
!! GTAATGAAATTTCTATTTAT+AGG + chr8_3:25684633-25684652 Msa1283860:five_prime_UTR 15.0%
!!! TTTTTTTTTTCATTCAGAAA+TGG + chr8_3:25684728-25684747 Msa1283860:exon 15.0%
!! GTATAGTTATGAAAAATATA+TGG - chr8_3:25685627-25685646 None:intergenic 15.0%
!! AAATTTCTATTTATAGGCAT+GGG + chr8_3:25684639-25684658 Msa1283860:five_prime_UTR 20.0%
!! TGCTCTTATTAATTGAATTA+AGG - chr8_3:25685033-25685052 None:intergenic 20.0%
!!! AATTCAATTAATAAGAGCAT+AGG + chr8_3:25685034-25685053 Msa1283860:intron 20.0%
!!! ATTCAATTAATAAGAGCATA+GGG + chr8_3:25685035-25685054 Msa1283860:intron 20.0%
!! CATAATCTTCGTATAAAATA+TGG - chr8_3:25685062-25685081 None:intergenic 20.0%
!! ACAATATATAGAATAAGTGA+TGG + chr8_3:25685274-25685293 Msa1283860:intron 20.0%
!! GATTTACATGTCTAAATAAA+TGG + chr8_3:25685327-25685346 Msa1283860:intron 20.0%
!! TAAAATGCTAAATACTCATT+AGG + chr8_3:25685395-25685414 Msa1283860:intron 20.0%
!! ATCATTGAAGTAATTGATAA+TGG + chr8_3:25685813-25685832 Msa1283860:CDS 20.0%
!! AAAGAAAGTAACAAATATGA+TGG + chr8_3:25685991-25686010 Msa1283860:three_prime_UTR 20.0%
!!! TTTTTGTAACAACCAAATAT+TGG + chr8_3:25686195-25686214 Msa1283860:three_prime_UTR 20.0%
!!! AAATATTGGTGTTTTTTTCT+CGG + chr8_3:25686209-25686228 Msa1283860:three_prime_UTR 20.0%
!! AAATTTCTATTTATAGGCAT+GGG + chr8_3:25684639-25684658 Msa1283860:five_prime_UTR 20.0%
!! TGCTCTTATTAATTGAATTA+AGG - chr8_3:25685033-25685052 None:intergenic 20.0%
!!! AATTCAATTAATAAGAGCAT+AGG + chr8_3:25685034-25685053 Msa1283860:intron 20.0%
!!! ATTCAATTAATAAGAGCATA+GGG + chr8_3:25685035-25685054 Msa1283860:intron 20.0%
!! CATAATCTTCGTATAAAATA+TGG - chr8_3:25685062-25685081 None:intergenic 20.0%
!! ACAATATATAGAATAAGTGA+TGG + chr8_3:25685274-25685293 Msa1283860:intron 20.0%
!! GATTTACATGTCTAAATAAA+TGG + chr8_3:25685327-25685346 Msa1283860:intron 20.0%
!! TAAAATGCTAAATACTCATT+AGG + chr8_3:25685395-25685414 Msa1283860:intron 20.0%
!! ATCATTGAAGTAATTGATAA+TGG + chr8_3:25685813-25685832 Msa1283860:CDS 20.0%
!! AAAGAAAGTAACAAATATGA+TGG + chr8_3:25685991-25686010 Msa1283860:three_prime_UTR 20.0%
!!! TTTTTGTAACAACCAAATAT+TGG + chr8_3:25686195-25686214 Msa1283860:three_prime_UTR 20.0%
! GAAATTTCTATTTATAGGCA+TGG + chr8_3:25684638-25684657 Msa1283860:five_prime_UTR 25.0%
! AATTTCTATTTATAGGCATG+GGG + chr8_3:25684640-25684659 Msa1283860:five_prime_UTR 25.0%
! GAAATAGAAGAAAGAAACTA+GGG - chr8_3:25684690-25684709 None:intergenic 25.0%
! AGAAATAGAAGAAAGAAACT+AGG - chr8_3:25684691-25684710 None:intergenic 25.0%
! AAATAAACAAGATGATGACT+TGG - chr8_3:25684970-25684989 None:intergenic 25.0%
! ACTTTATCTTTGTCATCTTT+AGG - chr8_3:25685086-25685105 None:intergenic 25.0%
!! TATTGTCTCATTGATTGATT+TGG - chr8_3:25685260-25685279 None:intergenic 25.0%
! AAAATAACTTTCAAGCTCTT+CGG + chr8_3:25685753-25685772 Msa1283860:CDS 25.0%
! ATTGATCTTCTCATATTCAA+CGG - chr8_3:25685865-25685884 None:intergenic 25.0%
! ATGTGATGCAAATCAATAAA+TGG + chr8_3:25686127-25686146 Msa1283860:three_prime_UTR 25.0%
! GAGAAAAAAACACCAATATT+TGG - chr8_3:25686210-25686229 None:intergenic 25.0%
! GAAATTTCTATTTATAGGCA+TGG + chr8_3:25684638-25684657 Msa1283860:five_prime_UTR 25.0%
! AATTTCTATTTATAGGCATG+GGG + chr8_3:25684640-25684659 Msa1283860:five_prime_UTR 25.0%
! GAAATAGAAGAAAGAAACTA+GGG - chr8_3:25684690-25684709 None:intergenic 25.0%
! AGAAATAGAAGAAAGAAACT+AGG - chr8_3:25684691-25684710 None:intergenic 25.0%
! AAATAAACAAGATGATGACT+TGG - chr8_3:25684970-25684989 None:intergenic 25.0%
! ACTTTATCTTTGTCATCTTT+AGG - chr8_3:25685086-25685105 None:intergenic 25.0%
!! TATTGTCTCATTGATTGATT+TGG - chr8_3:25685260-25685279 None:intergenic 25.0%
! AAAATAACTTTCAAGCTCTT+CGG + chr8_3:25685753-25685772 Msa1283860:CDS 25.0%
! ATTGATCTTCTCATATTCAA+CGG - chr8_3:25685865-25685884 None:intergenic 25.0%
! ATGTGATGCAAATCAATAAA+TGG + chr8_3:25686127-25686146 Msa1283860:three_prime_UTR 25.0%
! GAGAAAAAAACACCAATATT+TGG - chr8_3:25686210-25686229 None:intergenic 25.0%
TAGTTTGAAGAACTTGTCAA+CGG - chr8_3:25684796-25684815 None:intergenic 30.0%
AAAAATAAGACACTGTTTCC+TGG + chr8_3:25685132-25685151 Msa1283860:intron 30.0%
ACAAATTCATATATGATGCC+AGG - chr8_3:25685153-25685172 None:intergenic 30.0%
CATATATGAATTTGTGCAGA+TGG + chr8_3:25685158-25685177 Msa1283860:intron 30.0%
ATAGATACGTAGTACATACT+TGG + chr8_3:25685358-25685377 Msa1283860:intron 30.0%
!! GAAGTAATTGATAATGGTGA+TGG + chr8_3:25685819-25685838 Msa1283860:CDS 30.0%
TGAATATGAGAAGATCAATG+AGG + chr8_3:25685866-25685885 Msa1283860:CDS 30.0%
ATGTGTTCGTAATAGCATAA+TGG + chr8_3:25686053-25686072 Msa1283860:three_prime_UTR 30.0%
TAGTTTGAAGAACTTGTCAA+CGG - chr8_3:25684796-25684815 None:intergenic 30.0%
AAAAATAAGACACTGTTTCC+TGG + chr8_3:25685132-25685151 Msa1283860:intron 30.0%
ACAAATTCATATATGATGCC+AGG - chr8_3:25685153-25685172 None:intergenic 30.0%
CATATATGAATTTGTGCAGA+TGG + chr8_3:25685158-25685177 Msa1283860:intron 30.0%
ATAGATACGTAGTACATACT+TGG + chr8_3:25685358-25685377 Msa1283860:intron 30.0%
!! GAAGTAATTGATAATGGTGA+TGG + chr8_3:25685819-25685838 Msa1283860:CDS 30.0%
TGAATATGAGAAGATCAATG+AGG + chr8_3:25685866-25685885 Msa1283860:CDS 30.0%
ATGTGTTCGTAATAGCATAA+TGG + chr8_3:25686053-25686072 Msa1283860:three_prime_UTR 30.0%
!! TAGGGTTGATATGATGAAAC+TGG - chr8_3:25684672-25684691 None:intergenic 35.0%
! GCAAACTTAGTACTGAACTT+GGG + chr8_3:25684760-25684779 Msa1283860:CDS 35.0%
AGTTTGAAGAACTTGTCAAC+GGG - chr8_3:25684795-25684814 None:intergenic 35.0%
ATCTTCACCTTCATGAAGTT+TGG - chr8_3:25684871-25684890 None:intergenic 35.0%
AACTTCATGAAGGTGAAGAT+TGG + chr8_3:25684871-25684890 Msa1283860:CDS 35.0%
!! ACACTGATTCAGTTAAACAC+TGG + chr8_3:25684898-25684917 Msa1283860:CDS 35.0%
AAACACTGGACTTATGTCAT+AGG + chr8_3:25684912-25684931 Msa1283860:CDS 35.0%
!! AAGATGATGACTTGGTTATG+AGG - chr8_3:25684962-25684981 None:intergenic 35.0%
ATATGAATTTGTGCAGATGG+AGG + chr8_3:25685161-25685180 Msa1283860:intron 35.0%
AGACATTGATGAGCACTATA+AGG + chr8_3:25685779-25685798 Msa1283860:CDS 35.0%
! TGATCTTAGTTTGAATGTGC+TGG + chr8_3:25686083-25686102 Msa1283860:three_prime_UTR 35.0%
!! TAGGGTTGATATGATGAAAC+TGG - chr8_3:25684672-25684691 None:intergenic 35.0%
! GCAAACTTAGTACTGAACTT+GGG + chr8_3:25684760-25684779 Msa1283860:CDS 35.0%
AGTTTGAAGAACTTGTCAAC+GGG - chr8_3:25684795-25684814 None:intergenic 35.0%
ATCTTCACCTTCATGAAGTT+TGG - chr8_3:25684871-25684890 None:intergenic 35.0%
AACTTCATGAAGGTGAAGAT+TGG + chr8_3:25684871-25684890 Msa1283860:CDS 35.0%
!! ACACTGATTCAGTTAAACAC+TGG + chr8_3:25684898-25684917 Msa1283860:CDS 35.0%
AAACACTGGACTTATGTCAT+AGG + chr8_3:25684912-25684931 Msa1283860:CDS 35.0%
!! AAGATGATGACTTGGTTATG+AGG - chr8_3:25684962-25684981 None:intergenic 35.0%
ATATGAATTTGTGCAGATGG+AGG + chr8_3:25685161-25685180 Msa1283860:intron 35.0%
AGACATTGATGAGCACTATA+AGG + chr8_3:25685779-25685798 Msa1283860:CDS 35.0%
! TGATCTTAGTTTGAATGTGC+TGG + chr8_3:25686083-25686102 Msa1283860:three_prime_UTR 35.0%
! GGCAAACTTAGTACTGAACT+TGG + chr8_3:25684759-25684778 Msa1283860:CDS 40.0%
CATCATGCCAAACTTCATGA+AGG + chr8_3:25684861-25684880 Msa1283860:CDS 40.0%
GTCCTAAACGATATGTGAGA+AGG + chr8_3:25685495-25685514 Msa1283860:intron 40.0%
TGCCTTCTCACATATCGTTT+AGG - chr8_3:25685500-25685519 None:intergenic 40.0%
TCCCATGACATCACAATAGA+TGG + chr8_3:25685678-25685697 Msa1283860:intron 40.0%
GCCATCTATTGTGATGTCAT+GGG - chr8_3:25685682-25685701 None:intergenic 40.0%
TGCCATCTATTGTGATGTCA+TGG - chr8_3:25685683-25685702 None:intergenic 40.0%
TGACATCACAATAGATGGCA+AGG + chr8_3:25685683-25685702 Msa1283860:intron 40.0%
ATAACTTTCAAGCTCTTCGG+TGG + chr8_3:25685756-25685775 Msa1283860:CDS 40.0%
!! ATTGATAATGGTGATGGCAG+TGG + chr8_3:25685825-25685844 Msa1283860:CDS 40.0%
GAGGATATTGACCCACAAAA+TGG + chr8_3:25685885-25685904 Msa1283860:CDS 40.0%
ATATTGACCCACAAAATGGC+TGG + chr8_3:25685889-25685908 Msa1283860:CDS 40.0%
! AATGGCTGGATGGACTTATT+AGG + chr8_3:25685903-25685922 Msa1283860:CDS 40.0%
GTTGATGCTCATCTTGTCAA+AGG + chr8_3:25685942-25685961 Msa1283860:CDS 40.0%
! GGCAAACTTAGTACTGAACT+TGG + chr8_3:25684759-25684778 Msa1283860:CDS 40.0%
CATCATGCCAAACTTCATGA+AGG + chr8_3:25684861-25684880 Msa1283860:CDS 40.0%
GTCCTAAACGATATGTGAGA+AGG + chr8_3:25685495-25685514 Msa1283860:intron 40.0%
TGCCTTCTCACATATCGTTT+AGG - chr8_3:25685500-25685519 None:intergenic 40.0%
TCCCATGACATCACAATAGA+TGG + chr8_3:25685678-25685697 Msa1283860:intron 40.0%
GCCATCTATTGTGATGTCAT+GGG - chr8_3:25685682-25685701 None:intergenic 40.0%
TGCCATCTATTGTGATGTCA+TGG - chr8_3:25685683-25685702 None:intergenic 40.0%
TGACATCACAATAGATGGCA+AGG + chr8_3:25685683-25685702 Msa1283860:intron 40.0%
ATAACTTTCAAGCTCTTCGG+TGG + chr8_3:25685756-25685775 Msa1283860:CDS 40.0%
!! ATTGATAATGGTGATGGCAG+TGG + chr8_3:25685825-25685844 Msa1283860:CDS 40.0%
GAGGATATTGACCCACAAAA+TGG + chr8_3:25685885-25685904 Msa1283860:CDS 40.0%
ATATTGACCCACAAAATGGC+TGG + chr8_3:25685889-25685908 Msa1283860:CDS 40.0%
! AATGGCTGGATGGACTTATT+AGG + chr8_3:25685903-25685922 Msa1283860:CDS 40.0%
GTTGATGCTCATCTTGTCAA+AGG + chr8_3:25685942-25685961 Msa1283860:CDS 40.0%
CATTCAGAAATGGTGCTTGC+TGG + chr8_3:25684738-25684757 Msa1283860:exon 45.0%
TTGTGCAGATGGAGGATCTA+TGG + chr8_3:25685169-25685188 Msa1283860:intron 45.0%
!! AGTCCATCCAGCCATTTTGT+GGG - chr8_3:25685899-25685918 None:intergenic 45.0%
!! AAGTCCATCCAGCCATTTTG+TGG - chr8_3:25685900-25685919 None:intergenic 45.0%
CATTCAGAAATGGTGCTTGC+TGG + chr8_3:25684738-25684757 Msa1283860:exon 45.0%
TTGTGCAGATGGAGGATCTA+TGG + chr8_3:25685169-25685188 Msa1283860:intron 45.0%
!! AGTCCATCCAGCCATTTTGT+GGG - chr8_3:25685899-25685918 None:intergenic 45.0%
!! AAGTCCATCCAGCCATTTTG+TGG - chr8_3:25685900-25685919 None:intergenic 45.0%
CAGATGGAGGATCTATGGAG+AGG + chr8_3:25685174-25685193 Msa1283860:intron 50.0%
ATGGCAGTGGAGCTGCAAAA+TGG + chr8_3:25685838-25685857 Msa1283860:CDS 50.0%
TGACCCACAAAATGGCTGGA+TGG + chr8_3:25685893-25685912 Msa1283860:CDS 50.0%
CAGATGGAGGATCTATGGAG+AGG + chr8_3:25685174-25685193 Msa1283860:intron 50.0%
ATGGCAGTGGAGCTGCAAAA+TGG + chr8_3:25685838-25685857 Msa1283860:CDS 50.0%
TGACCCACAAAATGGCTGGA+TGG + chr8_3:25685893-25685912 Msa1283860:CDS 50.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 25684622 25686231 25684622 ID=Msa1283860;Name=Msa1283860
chr8_3 mRNA 25684622 25686231 25684622 ID=Msa1283860-mRNA-1;Parent=Msa1283860;Name=Msa1283860-mRNA-1;_AED=0.25;_eAED=0.25;_QI=125|1|1|1|1|1|2|254|155
chr8_3 exon 25684622 25684933 25684622 ID=Msa1283860-mRNA-1:exon:9045;Parent=Msa1283860-mRNA-1
chr8_3 exon 25685697 25686231 25685697 ID=Msa1283860-mRNA-1:exon:9046;Parent=Msa1283860-mRNA-1
chr8_3 five_prime_UTR 25684622 25684746 25684622 ID=Msa1283860-mRNA-1:five_prime_utr;Parent=Msa1283860-mRNA-1
chr8_3 CDS 25684747 25684933 25684747 ID=Msa1283860-mRNA-1:cds;Parent=Msa1283860-mRNA-1
chr8_3 CDS 25685697 25685977 25685697 ID=Msa1283860-mRNA-1:cds;Parent=Msa1283860-mRNA-1
chr8_3 three_prime_UTR 25685978 25686231 25685978 ID=Msa1283860-mRNA-1:three_prime_utr;Parent=Msa1283860-mRNA-1
Gene Sequence

>Msa1283860

ATGGTGCTTGCTGGCAAACTTAGTACTGAACTTGGGATCAAAACACCCGTTGACAAGTTCTTCAAACTATATGCATCAGAACTTCACGAAGTGCAAAACATTAGTGAAAGAATTCATCATGCCAAACTTCATGAAGGTGAAGATTGGCATCACACTGATTCAGTTAAACACTGGACTTATGTCATAGATGGCAAGGTAAACACATGTCATGAGAGTGTTGAAGAAGTTGATGAACAGAACAAAAAAATAACTTTCAAGCTCTTCGGTGGAGACATTGATGAGCACTATAAGGTCTTTAATCTGATCATTGAAGTAATTGATAATGGTGATGGCAGTGGAGCTGCAAAATGGACCGTTGAATATGAGAAGATCAATGAGGATATTGACCCACAAAATGGCTGGATGGACTTATTAGGCAAAATCACTCGAGAAGTTGATGCTCATCTTGTCAAAGGCACAAACATATAG

Protein sequence

>Msa1283860

MVLAGKLSTELGIKTPVDKFFKLYASELHEVQNISERIHHAKLHEGEDWHHTDSVKHWTYVIDGKVNTCHESVEEVDEQNKKITFKLFGGDIDEHYKVFNLIIEVIDNGDGSGAAKWTVEYEKINEDIDPQNGWMDLLGKITREVDAHLVKGTNI*