Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1292380 | KEH20113.1 | 85.135 | 74 | 11 | 0 | 1 | 74 | 7 | 80 | 1.81e-27 | 107 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1292380 | A0A072TRG8 | 85.135 | 74 | 11 | 0 | 1 | 74 | 7 | 80 | 8.62e-28 | 107 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0041000 | Msa1292380 | 0.808014 | 3.812954e-50 | -8.615850e-47 |
| Msa0074080 | Msa1292380 | 0.807200 | 5.678326e-50 | -8.615850e-47 |
| Msa0179860 | Msa1292380 | 0.815146 | 1.073316e-51 | -8.615850e-47 |
| Msa1050480 | Msa1292380 | 0.802730 | 4.883221e-49 | -8.615850e-47 |
| Msa0528970 | Msa1292380 | 0.801209 | 1.002898e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1292380 | MtrunA17_Chr8g0367301 | 85.135 | 74 | 11 | 0 | 1 | 74 | 7 | 80 | 1.66e-31 | 107 |
| Msa1292380 | MtrunA17_Chr8g0367301 | 51.562 | 64 | 14 | 1 | 79 | 125 | 20 | 83 | 1.42e-12 | 59.3 |
| Msa1292380 | MtrunA17_Chr8g0367281 | 72.000 | 75 | 20 | 1 | 1 | 74 | 7 | 81 | 1.82e-27 | 97.1 |
| Msa1292380 | MtrunA17_Chr8g0367271 | 71.429 | 70 | 19 | 1 | 1 | 69 | 7 | 76 | 4.74e-25 | 90.9 |
| Msa1292380 | MtrunA17_Chr8g0367291 | 70.370 | 81 | 22 | 2 | 1 | 79 | 7 | 87 | 7.80e-25 | 90.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 42 sgRNAs with CRISPR-Local
Find 450 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTCCTGGGACGTTAATTC+TGG | 0.158332 | 8_3:-48620559 | None:intergenic |
| TGTTCCTGGGATGTTGATTC+TGG | 0.186412 | 8_3:-48628754 | None:intergenic |
| AACTGGTTGGTCTCCTTTAC+AGG | 0.205489 | 8_3:+48620496 | Msa1292380:CDS |
| GGCCGTCGGTGTGGTGTTCC+TGG | 0.226290 | 8_3:-48628768 | None:intergenic |
| GATGTGTAGGCGGAGTTGTT+GGG | 0.296935 | 8_3:-48628722 | None:intergenic |
| GGATGTGTAGGCGGAGTTGT+TGG | 0.388358 | 8_3:-48628723 | None:intergenic |
| GTTCCTGGGATGTTGATTCT+GGG | 0.395116 | 8_3:-48628753 | None:intergenic |
| ATGTGTAGGCGGAGTTGTTG+GGG | 0.459401 | 8_3:-48628721 | None:intergenic |
| ATCACTCTTACTAGTGTAGC+AGG | 0.461924 | 8_3:+48628642 | Msa1292380:intron |
| GATCGTGCAGACTGATACTT+GGG | 0.462714 | 8_3:-48620429 | None:intergenic |
| GGATCGTGCAGACTGATACT+TGG | 0.466159 | 8_3:-48620430 | None:intergenic |
| GTTCCTGGGACGTTAATTCT+GGG | 0.470177 | 8_3:-48620558 | None:intergenic |
| AATATCTAGGTCGCCTGTAA+AGG | 0.480689 | 8_3:-48620509 | None:intergenic |
| GCCGTCGGTGTGGTGTTCCT+GGG | 0.501676 | 8_3:-48628767 | None:intergenic |
| CTGGAAACTGATGAATCCAT+TGG | 0.503588 | 8_3:-48628697 | None:intergenic |
| CCCGTGAGTGTGGTGTTCCT+GGG | 0.504144 | 8_3:-48620572 | None:intergenic |
| TTAATTCTGGGACGATATTG+AGG | 0.507755 | 8_3:-48620546 | None:intergenic |
| GGTGGCGGCGCTAAATATCT+AGG | 0.508894 | 8_3:-48620522 | None:intergenic |
| GATCGTGCAGACTGATGCTT+GGG | 0.515124 | 8_3:-48628675 | None:intergenic |
| CTGGTAACTGATGAATCCAT+TGG | 0.517670 | 8_3:-48620451 | None:intergenic |
| ATGTTGATTCTGGGAGGAAA+CGG | 0.526127 | 8_3:-48628744 | None:intergenic |
| ATCACTCTTACTACCGTAGC+AGG | 0.531359 | 8_3:+48620396 | Msa1292380:CDS |
| CTGGGACGATATTGAGGTGG+TGG | 0.532512 | 8_3:-48620540 | None:intergenic |
| TCCCAGGAACACCACACTCA+CGG | 0.533282 | 8_3:+48620571 | Msa1292380:CDS |
| CCCAGGAACACCACACTCAC+GGG | 0.536133 | 8_3:+48620572 | Msa1292380:CDS |
| GGGATTAATATTTCCTGCTA+CGG | 0.546359 | 8_3:-48620409 | None:intergenic |
| GGATCGTGCAGACTGATGCT+TGG | 0.547669 | 8_3:-48628676 | None:intergenic |
| CATCAGTCTGCACGATCCAA+TGG | 0.557471 | 8_3:+48628681 | Msa1292380:CDS |
| GGACGATATTGAGGTGGTGG+CGG | 0.563460 | 8_3:-48620537 | None:intergenic |
| CTGGGAGGAAACGGATGTGT+AGG | 0.565668 | 8_3:-48628735 | None:intergenic |
| TATCAGTCTGCACGATCCAA+TGG | 0.567935 | 8_3:+48620435 | Msa1292380:CDS |
| CGTCCCAGAATTAACGTCCC+AGG | 0.577444 | 8_3:+48620555 | Msa1292380:CDS |
| CCTCCCAGAATCAACATCCC+AGG | 0.589365 | 8_3:+48628750 | Msa1292380:CDS |
| TCCCAGGAACACCACACCGA+CGG | 0.594845 | 8_3:+48628766 | Msa1292380:CDS |
| GGGTGTCGAGCCCGTGAGTG+TGG | 0.615715 | 8_3:-48620582 | None:intergenic |
| AATCGAAGAGGCCGTCGGTG+TGG | 0.643154 | 8_3:-48628777 | None:intergenic |
| GGAGGAAACGGATGTGTAGG+CGG | 0.645081 | 8_3:-48628732 | None:intergenic |
| TGTGTAGGCGGAGTTGTTGG+GGG | 0.652858 | 8_3:-48628720 | None:intergenic |
| GGGCGTAACGGGAATCGAAG+AGG | 0.659975 | 8_3:-48628789 | None:intergenic |
| ATTCTGGGACGATATTGAGG+TGG | 0.669252 | 8_3:-48620543 | None:intergenic |
| ACGGGAATCGAAGAGGCCGT+CGG | 0.670737 | 8_3:-48628782 | None:intergenic |
| CCTGGGATGTTGATTCTGGG+AGG | 0.710965 | 8_3:-48628750 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAAATAATATTATAAA+AGG | - | chr8_3:48626238-48626257 | None:intergenic | 0.0% |
| !!! | TTTATAATATTATTTAAAAT+AGG | + | chr8_3:48626238-48626257 | Msa1292380:intron | 0.0% |
| !!! | TTATAATATTATTTAAAATA+GGG | + | chr8_3:48626239-48626258 | Msa1292380:intron | 0.0% |
| !!! | TTTTTCTTTATAAATATAAC+CGG | - | chr8_3:48620687-48620706 | None:intergenic | 10.0% |
| !! | CATTAAATATTTAATGTATT+TGG | - | chr8_3:48620751-48620770 | None:intergenic | 10.0% |
| !! | TAAAATAAAAAAATTAATCC+AGG | + | chr8_3:48621186-48621205 | Msa1292380:intron | 10.0% |
| !! | AAATTATTAAAAATGTCAAT+TGG | - | chr8_3:48625220-48625239 | None:intergenic | 10.0% |
| !! | AATTATTTAATGGTATAATT+TGG | - | chr8_3:48625615-48625634 | None:intergenic | 10.0% |
| !! | AATGAGATATTAAATAAATA+AGG | + | chr8_3:48625836-48625855 | Msa1292380:intron | 10.0% |
| !!! | GTAATTTTTTTTTATATTGT+CGG | + | chr8_3:48625966-48625985 | Msa1292380:intron | 10.0% |
| !! | AATAAAATACTTTAAATGAA+GGG | - | chr8_3:48626204-48626223 | None:intergenic | 10.0% |
| !! | AAATAAAATACTTTAAATGA+AGG | - | chr8_3:48626205-48626224 | None:intergenic | 10.0% |
| !!! | GTATAGATTAATATTTTAAA+GGG | - | chr8_3:48626543-48626562 | None:intergenic | 10.0% |
| !!! | AGTATAGATTAATATTTTAA+AGG | - | chr8_3:48626544-48626563 | None:intergenic | 10.0% |
| !!! | GCTTATTTTAATTAATTTTT+CGG | + | chr8_3:48626745-48626764 | Msa1292380:intron | 10.0% |
| !!! | CTTATTTTAATTAATTTTTC+GGG | + | chr8_3:48626746-48626765 | Msa1292380:intron | 10.0% |
| !!! | TTATTTTAATTAATTTTTCG+GGG | + | chr8_3:48626747-48626766 | Msa1292380:intron | 10.0% |
| !! | ATACTATAATAAAATATGTT+TGG | - | chr8_3:48626795-48626814 | None:intergenic | 10.0% |
| !!! | TATCTTTTTATATACAAATA+AGG | + | chr8_3:48626830-48626849 | Msa1292380:intron | 10.0% |
| !! | TGATAAAAAATTATCAAATT+AGG | + | chr8_3:48626911-48626930 | Msa1292380:intron | 10.0% |
| !! | GATAAAAAATTATCAAATTA+GGG | + | chr8_3:48626912-48626931 | Msa1292380:intron | 10.0% |
| !! | ATTTATCAAATTATCTAAAT+AGG | + | chr8_3:48626969-48626988 | Msa1292380:intron | 10.0% |
| !! | TTTATCAAATTATCTAAATA+GGG | + | chr8_3:48626970-48626989 | Msa1292380:intron | 10.0% |
| !!! | GTTAAATTTCTTTTAAAAAA+TGG | + | chr8_3:48627069-48627088 | Msa1292380:intron | 10.0% |
| !! | TCAATAATATTATTATGATA+TGG | + | chr8_3:48627250-48627269 | Msa1292380:intron | 10.0% |
| !!! | AATAACTTTTTCTATAATAA+AGG | + | chr8_3:48627963-48627982 | Msa1292380:intron | 10.0% |
| !! | ATAAATCATTATTATCCATA+TGG | - | chr8_3:48620879-48620898 | None:intergenic | 15.0% |
| !! | CTAATAATGTTGATATTTAT+CGG | + | chr8_3:48621098-48621117 | Msa1292380:intron | 15.0% |
| !! | AGAATTAAGTATGATATAAT+CGG | - | chr8_3:48621153-48621172 | None:intergenic | 15.0% |
| !!! | AAAGAAAATAACATGTTTTT+TGG | + | chr8_3:48622143-48622162 | Msa1292380:intron | 15.0% |
| !! | AAAATTTATAAGGCAAATAT+AGG | - | chr8_3:48625158-48625177 | None:intergenic | 15.0% |
| !! | ATAAAGAAAATACATCAATT+TGG | + | chr8_3:48626569-48626588 | Msa1292380:intron | 15.0% |
| !! | TAAAGAAAATACATCAATTT+GGG | + | chr8_3:48626570-48626589 | Msa1292380:intron | 15.0% |
| !!! | ACTTTTTTTCTTAACTAAAT+AGG | + | chr8_3:48627002-48627021 | Msa1292380:intron | 15.0% |
| !!! | CTTTTTTTCTTAACTAAATA+GGG | + | chr8_3:48627003-48627022 | Msa1292380:intron | 15.0% |
| !!! | TTTTTTTCTTAACTAAATAG+GGG | + | chr8_3:48627004-48627023 | Msa1292380:intron | 15.0% |
| !!! | ACTATAAATCTTTTGTAATT+AGG | + | chr8_3:48627181-48627200 | Msa1292380:intron | 15.0% |
| !! | TAAGGAATATAAAAAACATA+GGG | - | chr8_3:48627287-48627306 | None:intergenic | 15.0% |
| !! | TTAAGGAATATAAAAAACAT+AGG | - | chr8_3:48627288-48627307 | None:intergenic | 15.0% |
| !!! | TTACACATTTTAAATGATAA+GGG | - | chr8_3:48627885-48627904 | None:intergenic | 15.0% |
| !!! | TTTACACATTTTAAATGATA+AGG | - | chr8_3:48627886-48627905 | None:intergenic | 15.0% |
| !! | TAGAAAAAGTTATTGTTTAA+AGG | - | chr8_3:48627957-48627976 | None:intergenic | 15.0% |
| !! | TAACGTTTAAAAATTATGAT+TGG | - | chr8_3:48628145-48628164 | None:intergenic | 15.0% |
| !! | CTCTAGATAAACTAAAAATA+TGG | - | chr8_3:48621032-48621051 | None:intergenic | 20.0% |
| !! | TGGTAAATGTATAAAGTAAA+TGG | - | chr8_3:48621337-48621356 | None:intergenic | 20.0% |
| !!! | TTGTTTTGTCAATTTCTATT+TGG | + | chr8_3:48621532-48621551 | Msa1292380:intron | 20.0% |
| !! | TCTATATATTCATTTCAGTA+TGG | - | chr8_3:48621569-48621588 | None:intergenic | 20.0% |
| !! | TAATCTATAGTTCATATGTA+AGG | + | chr8_3:48621776-48621795 | Msa1292380:intron | 20.0% |
| !!! | TATTTTCACAAATCATCATA+TGG | - | chr8_3:48622634-48622653 | None:intergenic | 20.0% |
| !! | TAATTAAATAGCACAATCTT+AGG | - | chr8_3:48623093-48623112 | None:intergenic | 20.0% |
| !!! | TAAGATTGTGCTATTTAATT+AGG | + | chr8_3:48623092-48623111 | Msa1292380:intron | 20.0% |
| !!! | CTATTTAATTAGGAAAGTTT+TGG | + | chr8_3:48623102-48623121 | Msa1292380:intron | 20.0% |
| !! | TAATATGTAGACACATAATT+AGG | - | chr8_3:48623144-48623163 | None:intergenic | 20.0% |
| !! | TAATTATGTGTCTACATATT+AGG | + | chr8_3:48623143-48623162 | Msa1292380:intron | 20.0% |
| !!! | ACTAAAAAGGTTTAGTTTTT+AGG | + | chr8_3:48623300-48623319 | Msa1292380:intron | 20.0% |
| !!! | CTAAAAAGGTTTAGTTTTTA+GGG | + | chr8_3:48623301-48623320 | Msa1292380:intron | 20.0% |
| !!! | ATTTGTTATTTAAGTATCAC+AGG | + | chr8_3:48623513-48623532 | Msa1292380:intron | 20.0% |
| !!! | TTTGTTATTTAAGTATCACA+GGG | + | chr8_3:48623514-48623533 | Msa1292380:intron | 20.0% |
| !! | ACCATAGTCAAAAATTTATA+AGG | - | chr8_3:48625168-48625187 | None:intergenic | 20.0% |
| !! | TTATAGAAAATAGTGTGTAA+GGG | - | chr8_3:48625541-48625560 | None:intergenic | 20.0% |
| !! | ATTATAGAAAATAGTGTGTA+AGG | - | chr8_3:48625542-48625561 | None:intergenic | 20.0% |
| !!! | ATTACCCTTATTTATTATTG+TGG | + | chr8_3:48625797-48625816 | Msa1292380:intron | 20.0% |
| !! | TCAAAATGTGACAATTAAAA+AGG | + | chr8_3:48625933-48625952 | Msa1292380:intron | 20.0% |
| !! | TAACGTTTGAAAATTATGAA+CGG | - | chr8_3:48626088-48626107 | None:intergenic | 20.0% |
| !! | ATAAAGAAAATGCATCAATA+CGG | + | chr8_3:48626152-48626171 | Msa1292380:intron | 20.0% |
| !! | TTTAAATGAAGGGTAAAATT+GGG | - | chr8_3:48626194-48626213 | None:intergenic | 20.0% |
| !! | CAAAACTGTAAATATTTACA+GGG | - | chr8_3:48626282-48626301 | None:intergenic | 20.0% |
| !! | ACAAAACTGTAAATATTTAC+AGG | - | chr8_3:48626283-48626302 | None:intergenic | 20.0% |
| !!! | AAGTGTGATTTTATTTTGTA+GGG | - | chr8_3:48626313-48626332 | None:intergenic | 20.0% |
| !!! | AAAGTGTGATTTTATTTTGT+AGG | - | chr8_3:48626314-48626333 | None:intergenic | 20.0% |
| !!! | AAAATTTTCCATCAACATTT+TGG | - | chr8_3:48626374-48626393 | None:intergenic | 20.0% |
| !!! | ATGTTGATGGAAAATTTTAT+AGG | + | chr8_3:48626439-48626458 | Msa1292380:intron | 20.0% |
| !!! | TGTTGATGGAAAATTTTATA+GGG | + | chr8_3:48626440-48626459 | Msa1292380:intron | 20.0% |
| !!! | AAAGTACGATTTTATTTTGT+AGG | + | chr8_3:48626468-48626487 | Msa1292380:intron | 20.0% |
| !!! | AAGTACGATTTTATTTTGTA+GGG | + | chr8_3:48626469-48626488 | Msa1292380:intron | 20.0% |
| !! | CAAAATCCTGAATATTTATA+GGG | + | chr8_3:48626500-48626519 | Msa1292380:intron | 20.0% |
| !! | TATAAAAAACATAGGGAATA+TGG | - | chr8_3:48627280-48627299 | None:intergenic | 20.0% |
| !! | GTAATATAGGTTCTATTTAT+AGG | - | chr8_3:48627362-48627381 | None:intergenic | 20.0% |
| !! | TCTACTTTACATTGTAATAT+AGG | - | chr8_3:48627375-48627394 | None:intergenic | 20.0% |
| !!! | TAGAAAATTGATGACATTTT+TGG | - | chr8_3:48627776-48627795 | None:intergenic | 20.0% |
| !! | ATTATTACTAACGAAAAGAT+AGG | - | chr8_3:48628212-48628231 | None:intergenic | 20.0% |
| !!! | CTTTTCGTTAGTAATAATAA+AGG | + | chr8_3:48628214-48628233 | Msa1292380:intron | 20.0% |
| !!! | ATAAACCATGTTAGATTTTT+CGG | - | chr8_3:48628407-48628426 | None:intergenic | 20.0% |
| !!! | TTCTTTTTTAGGAAATTAAG+TGG | + | chr8_3:48628456-48628475 | Msa1292380:intron | 20.0% |
| !!! | AAGTGGAAATTAAGTATTTT+TGG | + | chr8_3:48628473-48628492 | Msa1292380:intron | 20.0% |
| !!! | TTAAGTATTTTTGGAAGAAA+AGG | + | chr8_3:48628482-48628501 | Msa1292380:intron | 20.0% |
| !! | TTTTTGTGTATAAGTTGTTG+GGG | - | chr8_3:48620478-48620497 | None:intergenic | 25.0% |
| !! | GTTTTTGTGTATAAGTTGTT+GGG | - | chr8_3:48620479-48620498 | None:intergenic | 25.0% |
| !! | AGTTTTTGTGTATAAGTTGT+TGG | - | chr8_3:48620480-48620499 | None:intergenic | 25.0% |
| ! | AACAACTTATACACAAAAAC+TGG | + | chr8_3:48620479-48620498 | Msa1292380:CDS | 25.0% |
| !! | GTTCTTAACTCTTACATTTT+AGG | - | chr8_3:48620621-48620640 | None:intergenic | 25.0% |
| ! | TCTTTATAAATATAACCGGA+TGG | - | chr8_3:48620683-48620702 | None:intergenic | 25.0% |
| ! | AACAAGTGTATTGTTCATTA+AGG | + | chr8_3:48620913-48620932 | Msa1292380:intron | 25.0% |
| ! | AAATTAATCCAGGTCAATAA+CGG | + | chr8_3:48621196-48621215 | Msa1292380:intron | 25.0% |
| ! | TTATTGTCATGCAAATTTAC+TGG | + | chr8_3:48621250-48621269 | Msa1292380:intron | 25.0% |
| ! | AATTAACAACAAATCAGTAC+TGG | - | chr8_3:48621357-48621376 | None:intergenic | 25.0% |
| !!! | TACAAACAAGCATTGTTTTA+AGG | + | chr8_3:48621424-48621443 | Msa1292380:intron | 25.0% |
| ! | TATATTCATTTCAGTATGGA+AGG | - | chr8_3:48621565-48621584 | None:intergenic | 25.0% |
| ! | GTTGGAGACTAATTTATTAA+TGG | - | chr8_3:48621633-48621652 | None:intergenic | 25.0% |
| ! | TCTATATCTTCACATTAGTA+TGG | - | chr8_3:48621684-48621703 | None:intergenic | 25.0% |
| !!! | TTTTTTCCAAAGAATATGCT+AGG | + | chr8_3:48621956-48621975 | Msa1292380:intron | 25.0% |
| !! | TTTTTCCAAAGAATATGCTA+GGG | + | chr8_3:48621957-48621976 | Msa1292380:intron | 25.0% |
| !!! | TTTGTGTTTTTTTTTACGCA+AGG | + | chr8_3:48621985-48622004 | Msa1292380:intron | 25.0% |
| !!! | TTGTGTTTTTTTTTACGCAA+GGG | + | chr8_3:48621986-48622005 | Msa1292380:intron | 25.0% |
| ! | TATGCATGATTTATTGCATT+TGG | + | chr8_3:48622096-48622115 | Msa1292380:intron | 25.0% |
| ! | ATGCATGATTTATTGCATTT+GGG | + | chr8_3:48622097-48622116 | Msa1292380:intron | 25.0% |
| ! | ATGTATTAGTAATCACTCTA+TGG | + | chr8_3:48622394-48622413 | Msa1292380:intron | 25.0% |
| !!! | TTTTTGGCTAAAACAAATTG+AGG | - | chr8_3:48622841-48622860 | None:intergenic | 25.0% |
| !!! | CACACATGAATATTTGTTTT+AGG | - | chr8_3:48622914-48622933 | None:intergenic | 25.0% |
| !!! | TTTAATTAGGAAAGTTTTGG+AGG | + | chr8_3:48623105-48623124 | Msa1292380:intron | 25.0% |
| !!! | ACTAAACCTTTTTAGTTTGA+CGG | - | chr8_3:48623296-48623315 | None:intergenic | 25.0% |
| !!! | TTGTTATTTAAGTATCACAG+GGG | + | chr8_3:48623515-48623534 | Msa1292380:intron | 25.0% |
| ! | ATACAAACAGAATGTTAAGT+AGG | - | chr8_3:48623953-48623972 | None:intergenic | 25.0% |
| ! | AAGACACAAAACAATTATAC+TGG | + | chr8_3:48624169-48624188 | Msa1292380:intron | 25.0% |
| ! | ATTACACAGAAATATGTTTG+AGG | + | chr8_3:48624401-48624420 | Msa1292380:intron | 25.0% |
| !! | ATTTGAAATTGTTCCTTCAT+AGG | - | chr8_3:48624713-48624732 | None:intergenic | 25.0% |
| ! | ACTATTTCAAAGTAATCAGA+AGG | - | chr8_3:48624872-48624891 | None:intergenic | 25.0% |
| !!! | GCCTTATAAATTTTTGACTA+TGG | + | chr8_3:48625164-48625183 | Msa1292380:intron | 25.0% |
| ! | TTTGTCATCATCAAAAAAGA+GGG | - | chr8_3:48625297-48625316 | None:intergenic | 25.0% |
| ! | ATGACAAACACTAGTATTAA+AGG | + | chr8_3:48625309-48625328 | Msa1292380:intron | 25.0% |
| ! | TTCAAAAGTGACACTTAAAA+AGG | - | chr8_3:48625707-48625726 | None:intergenic | 25.0% |
| ! | ATGTAAAGTGACACTTAAAT+AGG | - | chr8_3:48625743-48625762 | None:intergenic | 25.0% |
| !! | GCAATATTTATTGATTGTCT+TGG | + | chr8_3:48625897-48625916 | Msa1292380:intron | 25.0% |
| ! | ATGTGACAATTAAAAAGGAA+CGG | + | chr8_3:48625938-48625957 | Msa1292380:intron | 25.0% |
| ! | TAAAGAAAATGCATCAATAC+GGG | + | chr8_3:48626153-48626172 | Msa1292380:intron | 25.0% |
| ! | CTTTAAATGAAGGGTAAAAT+TGG | - | chr8_3:48626195-48626214 | None:intergenic | 25.0% |
| !! | ACATTTTCCTTAAGCATTTT+AGG | + | chr8_3:48626346-48626365 | Msa1292380:intron | 25.0% |
| !! | CATTTTCCTTAAGCATTTTA+GGG | + | chr8_3:48626347-48626366 | Msa1292380:intron | 25.0% |
| !!! | TGTTGATGGAAAATTTTTAC+AGG | + | chr8_3:48626377-48626396 | Msa1292380:intron | 25.0% |
| !!! | GTTGATGGAAAATTTTTACA+GGG | + | chr8_3:48626378-48626397 | Msa1292380:intron | 25.0% |
| !! | TTGATGGAAAATTTTTACAG+GGG | + | chr8_3:48626379-48626398 | Msa1292380:intron | 25.0% |
| !! | TGCTGATGGAAAAATTTTAT+AGG | + | chr8_3:48626408-48626427 | Msa1292380:intron | 25.0% |
| !! | GCTGATGGAAAAATTTTATA+GGG | + | chr8_3:48626409-48626428 | Msa1292380:intron | 25.0% |
| !! | CCTATAAATATTCAGGATTT+TGG | - | chr8_3:48626502-48626521 | None:intergenic | 25.0% |
| ! | CCAAAATCCTGAATATTTAT+AGG | + | chr8_3:48626499-48626518 | Msa1292380:intron | 25.0% |
| ! | TTTAGTCCCTATAAATATTC+AGG | - | chr8_3:48626509-48626528 | None:intergenic | 25.0% |
| ! | ATTTGATAAATAGCAACAAC+AGG | - | chr8_3:48626960-48626979 | None:intergenic | 25.0% |
| !!! | TTACATTTGCTTTTTCAGAA+AGG | - | chr8_3:48627042-48627061 | None:intergenic | 25.0% |
| ! | TCATTTACTCATAGAAGTTA+AGG | - | chr8_3:48627305-48627324 | None:intergenic | 25.0% |
| ! | TAAATGATAAGGGAAAAAAC+TGG | - | chr8_3:48627875-48627894 | None:intergenic | 25.0% |
| ! | AAAATCTAACATGGTTTATG+TGG | + | chr8_3:48628408-48628427 | Msa1292380:intron | 25.0% |
| ! | AAATCTAACATGGTTTATGT+GGG | + | chr8_3:48628409-48628428 | Msa1292380:intron | 25.0% |
| !! | AACTTTCTGAAAACTATGTA+GGG | - | chr8_3:48628526-48628545 | None:intergenic | 25.0% |
| !! | TAACTTTCTGAAAACTATGT+AGG | - | chr8_3:48628527-48628546 | None:intergenic | 25.0% |
| ! | TTTTGTGTATAAGTTGTTGG+GGG | - | chr8_3:48620477-48620496 | None:intergenic | 30.0% |
| ACTTATACACAAAAACTGGT+TGG | + | chr8_3:48620483-48620502 | Msa1292380:CDS | 30.0% | |
| ! | CTTAACTCTTACATTTTAGG+AGG | - | chr8_3:48620618-48620637 | None:intergenic | 30.0% |
| AGTTAAGAACTCACCATTTA+AGG | + | chr8_3:48620631-48620650 | Msa1292380:intron | 30.0% | |
| ! | GTGCTTAAGATTTTACCATA+TGG | + | chr8_3:48620861-48620880 | Msa1292380:intron | 30.0% |
| GAAAAGAACAAAACTGAATG+AGG | + | chr8_3:48620935-48620954 | Msa1292380:intron | 30.0% | |
| AGATAAACGTGTGTAAAAGA+GGG | - | chr8_3:48621231-48621250 | None:intergenic | 30.0% | |
| AAGATAAACGTGTGTAAAAG+AGG | - | chr8_3:48621232-48621251 | None:intergenic | 30.0% | |
| TGAGTAATTCAATTAGACAC+TGG | - | chr8_3:48621287-48621306 | None:intergenic | 30.0% | |
| ! | TGGAAGTATATATCGTAGTT+TGG | - | chr8_3:48621317-48621336 | None:intergenic | 30.0% |
| AGAAATTGACAAAACAACAG+CGG | - | chr8_3:48621529-48621548 | None:intergenic | 30.0% | |
| TATCTTCACATTAGTATGGA+AGG | - | chr8_3:48621680-48621699 | None:intergenic | 30.0% | |
| ! | TCTTCGATTTTTACGAAAAG+AGG | + | chr8_3:48621747-48621766 | Msa1292380:intron | 30.0% |
| ! | GTTATGAACATTTTGTCCTT+TGG | + | chr8_3:48621847-48621866 | Msa1292380:intron | 30.0% |
| TGGTTAATGAATTTCACCAA+AGG | - | chr8_3:48621866-48621885 | None:intergenic | 30.0% | |
| TGCATGATTTATTGCATTTG+GGG | + | chr8_3:48622098-48622117 | Msa1292380:intron | 30.0% | |
| ! | ATTTATTGCATTTGGGGTTT+AGG | + | chr8_3:48622104-48622123 | Msa1292380:intron | 30.0% |
| ! | TTTATTGCATTTGGGGTTTA+GGG | + | chr8_3:48622105-48622124 | Msa1292380:intron | 30.0% |
| !!! | AACATGTTTTTTGGCTCTTT+TGG | + | chr8_3:48622152-48622171 | Msa1292380:intron | 30.0% |
| !!! | ACATGTTTTTTGGCTCTTTT+GGG | + | chr8_3:48622153-48622172 | Msa1292380:intron | 30.0% |
| AGTACAAATAGCACATTGTT+GGG | + | chr8_3:48622213-48622232 | Msa1292380:intron | 30.0% | |
| ACATTGTTGGGTATTTGTAT+TGG | + | chr8_3:48622225-48622244 | Msa1292380:intron | 30.0% | |
| AATATCCATGTTTGTGATGT+TGG | + | chr8_3:48622267-48622286 | Msa1292380:intron | 30.0% | |
| AAAGTAACACAACTGCAAAA+CGG | - | chr8_3:48622346-48622365 | None:intergenic | 30.0% | |
| ! | TAAGTTGCTGCATGTTTTAT+GGG | + | chr8_3:48622529-48622548 | Msa1292380:intron | 30.0% |
| ! | TGACTGAAGAACTGTATTTT+GGG | + | chr8_3:48622712-48622731 | Msa1292380:intron | 30.0% |
| TTTAGCCAAAAAATTGCCAA+AGG | + | chr8_3:48622849-48622868 | Msa1292380:intron | 30.0% | |
| ATTGTTGGATATTTGCATGT+TGG | + | chr8_3:48622877-48622896 | Msa1292380:intron | 30.0% | |
| CAAATATTCATGTGTGATGT+TGG | + | chr8_3:48622918-48622937 | Msa1292380:intron | 30.0% | |
| AGCTTGATCAACAAGAATAA+AGG | - | chr8_3:48623033-48623052 | None:intergenic | 30.0% | |
| ! | ATATTAGGAGTTTCCTTTTC+TGG | + | chr8_3:48623158-48623177 | Msa1292380:intron | 30.0% |
| TATATATACTGCAGCAATAC+GGG | - | chr8_3:48623241-48623260 | None:intergenic | 30.0% | |
| GTATATATACTGCAGCAATA+CGG | - | chr8_3:48623242-48623261 | None:intergenic | 30.0% | |
| GTATCAAGATGATACAAGAA+AGG | - | chr8_3:48623394-48623413 | None:intergenic | 30.0% | |
| TATCATCTTGATACATGCTA+AGG | + | chr8_3:48623400-48623419 | Msa1292380:intron | 30.0% | |
| ATAAACGACAGGAAAGTAAA+CGG | - | chr8_3:48623749-48623768 | None:intergenic | 30.0% | |
| TATGATGTTGGAACATTGAA+TGG | + | chr8_3:48623797-48623816 | Msa1292380:intron | 30.0% | |
| CTTCAATATGTGTGAAATTC+CGG | - | chr8_3:48624018-48624037 | None:intergenic | 30.0% | |
| AACACTTGATATACAATCAG+TGG | + | chr8_3:48624427-48624446 | Msa1292380:intron | 30.0% | |
| ! | AAGCAATTTCAACAGAGTTT+TGG | + | chr8_3:48624544-48624563 | Msa1292380:intron | 30.0% |
| ATTTGGTTATTGTCCTATGA+AGG | + | chr8_3:48624697-48624716 | Msa1292380:intron | 30.0% | |
| TCATATGATTACAGAAGGAA+TGG | - | chr8_3:48624910-48624929 | None:intergenic | 30.0% | |
| CTTCTGTAATCATATGAACT+CGG | + | chr8_3:48624913-48624932 | Msa1292380:intron | 30.0% | |
| TAATATTTGTTCAAGTGTGC+AGG | - | chr8_3:48625191-48625210 | None:intergenic | 30.0% | |
| GTTATCATCTAAACTCAAAG+TGG | + | chr8_3:48625240-48625259 | Msa1292380:intron | 30.0% | |
| GTTTGTCATCATCAAAAAAG+AGG | - | chr8_3:48625298-48625317 | None:intergenic | 30.0% | |
| !! | GTTACGCTTTTAAAGGATAA+AGG | - | chr8_3:48625426-48625445 | None:intergenic | 30.0% |
| !!! | CTAGTTTGTTACGCTTTTAA+AGG | - | chr8_3:48625433-48625452 | None:intergenic | 30.0% |
| ! | TAGTGTGTAAGGGTATAATT+GGG | - | chr8_3:48625531-48625550 | None:intergenic | 30.0% |
| ! | ATAGTGTGTAAGGGTATAAT+TGG | - | chr8_3:48625532-48625551 | None:intergenic | 30.0% |
| AAGTGACACTTAAAAAGGAA+CGG | - | chr8_3:48625702-48625721 | None:intergenic | 30.0% | |
| ! | ACCCTTATTTATTATTGTGG+AGG | + | chr8_3:48625800-48625819 | Msa1292380:intron | 30.0% |
| CCCTCCACAATAATAAATAA+GGG | - | chr8_3:48625804-48625823 | None:intergenic | 30.0% | |
| ! | CCCTTATTTATTATTGTGGA+GGG | + | chr8_3:48625801-48625820 | Msa1292380:intron | 30.0% |
| TCCCTCCACAATAATAAATA+AGG | - | chr8_3:48625805-48625824 | None:intergenic | 30.0% | |
| TATTAAAAAGAGCGGAAAGA+CGG | + | chr8_3:48626111-48626130 | Msa1292380:intron | 30.0% | |
| ATAGGGACTAAAAATGTTGA+TGG | + | chr8_3:48626426-48626445 | Msa1292380:intron | 30.0% | |
| AATATTGTACCTACTGTAGT+GGG | - | chr8_3:48626709-48626728 | None:intergenic | 30.0% | |
| TAATATTGTACCTACTGTAG+TGG | - | chr8_3:48626710-48626729 | None:intergenic | 30.0% | |
| CCTAGAAAAGTAAAGAGAAA+AGG | - | chr8_3:48627439-48627458 | None:intergenic | 30.0% | |
| !! | CCTTTTCTCTTTACTTTTCT+AGG | + | chr8_3:48627436-48627455 | Msa1292380:intron | 30.0% |
| ! | AGATTAATTGTGTTTTGCCA+AGG | - | chr8_3:48627695-48627714 | None:intergenic | 30.0% |
| !!! | ATAACCACTTTCAGCTTTTT+TGG | + | chr8_3:48627733-48627752 | Msa1292380:intron | 30.0% |
| !!! | TAACCACTTTCAGCTTTTTT+GGG | + | chr8_3:48627734-48627753 | Msa1292380:intron | 30.0% |
| TTGTTTGATTGTGAAGAAGT+AGG | - | chr8_3:48628340-48628359 | None:intergenic | 30.0% | |
| TTTCACCGAAAAATCTAACA+TGG | + | chr8_3:48628399-48628418 | Msa1292380:intron | 30.0% | |
| !!! | CACGATAGTGTTTCTTTTTT+AGG | + | chr8_3:48628445-48628464 | Msa1292380:intron | 30.0% |
| TTGTGATAAGCAACGAATTT+AGG | - | chr8_3:48628563-48628582 | None:intergenic | 30.0% | |
| GGGATTAATATTTCCTGCTA+CGG | - | chr8_3:48620412-48620431 | None:intergenic | 35.0% | |
| !! | TTAATTCTGGGACGATATTG+AGG | - | chr8_3:48620549-48620568 | None:intergenic | 35.0% |
| !! | ACTCTTACATTTTAGGAGGT+GGG | - | chr8_3:48620614-48620633 | None:intergenic | 35.0% |
| !! | AACTCTTACATTTTAGGAGG+TGG | - | chr8_3:48620615-48620634 | None:intergenic | 35.0% |
| ACCATTTAAGGAAGCTAAGT+TGG | + | chr8_3:48620643-48620662 | Msa1292380:intron | 35.0% | |
| ACCAACTTAGCTTCCTTAAA+TGG | - | chr8_3:48620647-48620666 | None:intergenic | 35.0% | |
| GAACTCGAAATATCGTTGAT+AGG | - | chr8_3:48621055-48621074 | None:intergenic | 35.0% | |
| TTGAGAACATCACACAAAGT+TGG | - | chr8_3:48621651-48621670 | None:intergenic | 35.0% | |
| TTTGACCCTAGCATATTCTT+TGG | - | chr8_3:48621965-48621984 | None:intergenic | 35.0% | |
| CAGTACAAATAGCACATTGT+TGG | + | chr8_3:48622212-48622231 | Msa1292380:intron | 35.0% | |
| AACATCCAACATCACAAACA+TGG | - | chr8_3:48622275-48622294 | None:intergenic | 35.0% | |
| GTTTGTGATGTTGGATGTTA+TGG | + | chr8_3:48622276-48622295 | Msa1292380:intron | 35.0% | |
| ! | TGTTATGGTCCAACATGTTT+TGG | + | chr8_3:48622291-48622310 | Msa1292380:intron | 35.0% |
| ACACAACATCCAAAACATGT+TGG | - | chr8_3:48622303-48622322 | None:intergenic | 35.0% | |
| !! | ACATGTTTTGGATGTTGTGT+TGG | + | chr8_3:48622303-48622322 | Msa1292380:intron | 35.0% |
| !!! | GTTACTTTTCTTCATGCTTG+TGG | + | chr8_3:48622358-48622377 | Msa1292380:intron | 35.0% |
| TTTCCTATCAGTCAGATGTT+TGG | + | chr8_3:48622484-48622503 | Msa1292380:intron | 35.0% | |
| ! | GTAAGTTGCTGCATGTTTTA+TGG | + | chr8_3:48622528-48622547 | Msa1292380:intron | 35.0% |
| ! | GTGACTGAAGAACTGTATTT+TGG | + | chr8_3:48622711-48622730 | Msa1292380:intron | 35.0% |
| ! | GACTGAAGAACTGTATTTTG+GGG | + | chr8_3:48622713-48622732 | Msa1292380:intron | 35.0% |
| !!! | CTGTATTTTGGGGTATCTAT+TGG | + | chr8_3:48622723-48622742 | Msa1292380:intron | 35.0% |
| AGTATGTGTACCTATCTTCA+TGG | + | chr8_3:48622753-48622772 | Msa1292380:intron | 35.0% | |
| AAGCAATCAACCATGAAGAT+AGG | - | chr8_3:48622766-48622785 | None:intergenic | 35.0% | |
| GCTTGAGATGATTGAAGAAT+AGG | + | chr8_3:48622782-48622801 | Msa1292380:intron | 35.0% | |
| TGTTATCTCTCTTCTGTGTT+TGG | + | chr8_3:48622810-48622829 | Msa1292380:intron | 35.0% | |
| ! | ACGCACGCGTTTTATATTTA+AGG | + | chr8_3:48622999-48623018 | Msa1292380:intron | 35.0% |
| ! | TACACCAAAGCTTTTAAGCA+CGG | + | chr8_3:48623453-48623472 | Msa1292380:intron | 35.0% |
| !!! | ACGGTGTAGTTTTGTTTTGA+AGG | + | chr8_3:48623472-48623491 | Msa1292380:intron | 35.0% |
| TTGCTGAGAGCTATTGAATA+TGG | + | chr8_3:48623639-48623658 | Msa1292380:intron | 35.0% | |
| ! | TTGAATATGGACTACACTAG+TGG | + | chr8_3:48623652-48623671 | Msa1292380:intron | 35.0% |
| TGAAATTTAGCGCGTTAGTT+AGG | - | chr8_3:48623873-48623892 | None:intergenic | 35.0% | |
| AGCAGAAAACAGATAGATCA+AGG | - | chr8_3:48623912-48623931 | None:intergenic | 35.0% | |
| AATATGTGTGAAATTCCGGT+AGG | - | chr8_3:48624014-48624033 | None:intergenic | 35.0% | |
| CGGAATTTCACACATATTGA+AGG | + | chr8_3:48624016-48624035 | Msa1292380:intron | 35.0% | |
| AAGGTGAGAAAAACACAAGA+AGG | + | chr8_3:48624035-48624054 | Msa1292380:intron | 35.0% | |
| AGGTGAGAAAAACACAAGAA+GGG | + | chr8_3:48624036-48624055 | Msa1292380:intron | 35.0% | |
| ! | GAGTTTAGAGTCTTATGCAA+CGG | + | chr8_3:48624121-48624140 | Msa1292380:intron | 35.0% |
| !! | TGATTTTAGTGAACTCTCCT+TGG | - | chr8_3:48624237-48624256 | None:intergenic | 35.0% |
| TACTCAAGCACAAAAACAAG+AGG | + | chr8_3:48624303-48624322 | Msa1292380:intron | 35.0% | |
| !!! | TTGTTTTTGTGCTTGAGCAT+AGG | - | chr8_3:48624361-48624380 | None:intergenic | 35.0% |
| ! | AACGACTCTTTTTGATGTGT+TGG | - | chr8_3:48624641-48624660 | None:intergenic | 35.0% |
| CAAATCATGCAACAGATCAT+TGG | - | chr8_3:48624682-48624701 | None:intergenic | 35.0% | |
| CAATGATCTGTTGCATGATT+TGG | + | chr8_3:48624680-48624699 | Msa1292380:intron | 35.0% | |
| ! | CGTTGATTACTCTCTATTCA+TGG | - | chr8_3:48624741-48624760 | None:intergenic | 35.0% |
| ! | TCAAAGTAATCAGAAGGCAT+TGG | - | chr8_3:48624866-48624885 | None:intergenic | 35.0% |
| ! | TTTGAAATAGTTGTTGCTCC+AGG | + | chr8_3:48624881-48624900 | Msa1292380:intron | 35.0% |
| CGAGTTCATATGATTACAGA+AGG | - | chr8_3:48624915-48624934 | None:intergenic | 35.0% | |
| TGATGAACTTCATCTTCTGA+TGG | + | chr8_3:48624979-48624998 | Msa1292380:intron | 35.0% | |
| ! | GAGAGCGATGGAATTTTAAA+AGG | - | chr8_3:48625119-48625138 | None:intergenic | 35.0% |
| TCAAAAAAGAGGGAGATTGT+TGG | - | chr8_3:48625287-48625306 | None:intergenic | 35.0% | |
| TGACAATTAAAAAGGAACGG+AGG | + | chr8_3:48625941-48625960 | Msa1292380:intron | 35.0% | |
| CGTTAGCGTATTAAAAAGAG+CGG | + | chr8_3:48626103-48626122 | Msa1292380:intron | 35.0% | |
| TGCTTAAGGAAAATGTCACA+GGG | - | chr8_3:48626342-48626361 | None:intergenic | 35.0% | |
| ATGCTTAAGGAAAATGTCAC+AGG | - | chr8_3:48626343-48626362 | None:intergenic | 35.0% | |
| TTTGGTCCCTAAAATGCTTA+AGG | - | chr8_3:48626356-48626375 | None:intergenic | 35.0% | |
| TTTAGGGACCAAAATGTTGA+TGG | + | chr8_3:48626363-48626382 | Msa1292380:intron | 35.0% | |
| ATATTGTACCTACTGTAGTG+GGG | - | chr8_3:48626708-48626727 | None:intergenic | 35.0% | |
| TATCTCGAGCTACACTTAAT+TGG | + | chr8_3:48627153-48627172 | Msa1292380:intron | 35.0% | |
| GTTTGTGACCAAGTAAATCT+TGG | + | chr8_3:48627582-48627601 | Msa1292380:intron | 35.0% | |
| ! | TTCGCAGCAACAAATCTTTT+GGG | + | chr8_3:48627617-48627636 | Msa1292380:intron | 35.0% |
| TCTTCCCTAACGTGAAAAAA+GGG | - | chr8_3:48628277-48628296 | None:intergenic | 35.0% | |
| TTCTTCCCTAACGTGAAAAA+AGG | - | chr8_3:48628278-48628297 | None:intergenic | 35.0% | |
| GAAGAAACAAAATGACCGTA+GGG | + | chr8_3:48628292-48628311 | Msa1292380:intron | 35.0% | |
| TGCTAGAAACAAAACAAGCA+TGG | - | chr8_3:48628619-48628638 | None:intergenic | 35.0% | |
| CTGGTAACTGATGAATCCAT+TGG | - | chr8_3:48620454-48620473 | None:intergenic | 40.0% | |
| AATATCTAGGTCGCCTGTAA+AGG | - | chr8_3:48620512-48620531 | None:intergenic | 40.0% | |
| GTCCAATAAACTACTCCATC+CGG | + | chr8_3:48620665-48620684 | Msa1292380:intron | 40.0% | |
| AACCGGATGGAGTAGTTTAT+TGG | - | chr8_3:48620670-48620689 | None:intergenic | 40.0% | |
| GTGTACACAGTACAAACTAG+TGG | - | chr8_3:48621504-48621523 | None:intergenic | 40.0% | |
| TTCCTGCGTGGAACAATTAT+AGG | - | chr8_3:48621815-48621834 | None:intergenic | 40.0% | |
| AACAAGCAATTGAGATCGAG+TGG | - | chr8_3:48621886-48621905 | None:intergenic | 40.0% | |
| GGGACTAATTCGATTGAAAG+TGG | + | chr8_3:48622006-48622025 | Msa1292380:intron | 40.0% | |
| ! | GCTGCAGTTGCTAATTTTCA+TGG | + | chr8_3:48622452-48622471 | Msa1292380:intron | 40.0% |
| CATCCAAACATCTGACTGAT+AGG | - | chr8_3:48622490-48622509 | None:intergenic | 40.0% | |
| TTGCAGCAACAGAAACACAA+GGG | - | chr8_3:48622566-48622585 | None:intergenic | 40.0% | |
| AGCCAAAAAATTGCCAAAGG+AGG | + | chr8_3:48622852-48622871 | Msa1292380:intron | 40.0% | |
| !!! | CTCCTCCTTTGGCAATTTTT+TGG | - | chr8_3:48622857-48622876 | None:intergenic | 40.0% |
| TATCCAACAATCTCCTCCTT+TGG | - | chr8_3:48622868-48622887 | None:intergenic | 40.0% | |
| GATGTTCCAACATCATGACA+AGG | + | chr8_3:48622945-48622964 | Msa1292380:intron | 40.0% | |
| ACTGAACCTTGTCATGATGT+TGG | - | chr8_3:48622954-48622973 | None:intergenic | 40.0% | |
| GTAAATCAAGGCACATGAAC+AGG | - | chr8_3:48622981-48623000 | None:intergenic | 40.0% | |
| TAAAACGCGTGCGTAAATCA+AGG | - | chr8_3:48622993-48623012 | None:intergenic | 40.0% | |
| GATCAACAAGAATAAAGGCG+TGG | - | chr8_3:48623028-48623047 | None:intergenic | 40.0% | |
| !!! | AGTTTCCTTTTCTGGTTCTG+TGG | + | chr8_3:48623166-48623185 | Msa1292380:intron | 40.0% |
| TGTTGGGCTTCAGAACAATT+CGG | - | chr8_3:48623208-48623227 | None:intergenic | 40.0% | |
| ! | TACGGGTCAGTAAACTTGTT+GGG | - | chr8_3:48623224-48623243 | None:intergenic | 40.0% |
| ATACGGGTCAGTAAACTTGT+TGG | - | chr8_3:48623225-48623244 | None:intergenic | 40.0% | |
| !!! | CCTTTTTAGTTTGACGGCTT+CGG | - | chr8_3:48623290-48623309 | None:intergenic | 40.0% |
| TACACCGTGCTTAAAAGCTT+TGG | - | chr8_3:48623460-48623479 | None:intergenic | 40.0% | |
| ! | TTCCTAGGTTGAAGTCTAGA+CGG | + | chr8_3:48623584-48623603 | Msa1292380:intron | 40.0% |
| ACGTTTGCACTATATGACCT+AGG | - | chr8_3:48623616-48623635 | None:intergenic | 40.0% | |
| ACACAACTTACCTACATCTG+GGG | - | chr8_3:48623700-48623719 | None:intergenic | 40.0% | |
| GACACAACTTACCTACATCT+GGG | - | chr8_3:48623701-48623720 | None:intergenic | 40.0% | |
| TAGGTAAGTTGTGTCGAACT+GGG | + | chr8_3:48623706-48623725 | Msa1292380:intron | 40.0% | |
| CCAACAGCAAAATAAACGAC+AGG | - | chr8_3:48623760-48623779 | None:intergenic | 40.0% | |
| !!! | CCTGTCGTTTATTTTGCTGT+TGG | + | chr8_3:48623757-48623776 | Msa1292380:intron | 40.0% |
| GCTTACTGCTAGTATGATGT+TGG | + | chr8_3:48623785-48623804 | Msa1292380:intron | 40.0% | |
| ! | ACATAAGAAAGCTAGCCTAC+CGG | + | chr8_3:48623996-48624015 | Msa1292380:intron | 40.0% |
| GGTGAGAAAAACACAAGAAG+GGG | + | chr8_3:48624037-48624056 | Msa1292380:intron | 40.0% | |
| GTGAGAAAAACACAAGAAGG+GGG | + | chr8_3:48624038-48624057 | Msa1292380:intron | 40.0% | |
| TGAGAAAAACACAAGAAGGG+GGG | + | chr8_3:48624039-48624058 | Msa1292380:intron | 40.0% | |
| TCTATGAGACTCTGAACACT+GGG | - | chr8_3:48624103-48624122 | None:intergenic | 40.0% | |
| CTTACAGTCTTCAAGTCTTC+AGG | + | chr8_3:48624592-48624611 | Msa1292380:intron | 40.0% | |
| TTCTTGTACTACTGCAGACA+TGG | + | chr8_3:48624775-48624794 | Msa1292380:intron | 40.0% | |
| GAAAGAACAAATGAGAGCGA+TGG | - | chr8_3:48625131-48625150 | None:intergenic | 40.0% | |
| GACACTTAAAAAGGAACGGA+GGG | - | chr8_3:48625698-48625717 | None:intergenic | 40.0% | |
| TGACACTTAAAAAGGAACGG+AGG | - | chr8_3:48625699-48625718 | None:intergenic | 40.0% | |
| CTTCCATTCTATCCAAAACG+AGG | + | chr8_3:48627128-48627147 | Msa1292380:intron | 40.0% | |
| !! | AGACCTCGTTTTGGATAGAA+TGG | - | chr8_3:48627134-48627153 | None:intergenic | 40.0% |
| ! | CTTCGCAGCAACAAATCTTT+TGG | + | chr8_3:48627616-48627635 | Msa1292380:intron | 40.0% |
| AATGTCCTTGACACATTCCT+TGG | + | chr8_3:48627675-48627694 | Msa1292380:intron | 40.0% | |
| ! | TTTTGCCAAGGAATGTGTCA+AGG | - | chr8_3:48627683-48627702 | None:intergenic | 40.0% |
| TAGCCCAAAAAAGCTGAAAG+TGG | - | chr8_3:48627740-48627759 | None:intergenic | 40.0% | |
| TGAAAAAAGGGGGTAGAAAC+GGG | - | chr8_3:48628265-48628284 | None:intergenic | 40.0% | |
| GTGAAAAAAGGGGGTAGAAA+CGG | - | chr8_3:48628266-48628285 | None:intergenic | 40.0% | |
| !!! | TACCCCCTTTTTTCACGTTA+GGG | + | chr8_3:48628270-48628289 | Msa1292380:intron | 40.0% |
| TTCCCTAACGTGAAAAAAGG+GGG | - | chr8_3:48628275-48628294 | None:intergenic | 40.0% | |
| CTTCCCTAACGTGAAAAAAG+GGG | - | chr8_3:48628276-48628295 | None:intergenic | 40.0% | |
| GGAAGAAACAAAATGACCGT+AGG | + | chr8_3:48628291-48628310 | Msa1292380:intron | 40.0% | |
| TTTATGTGGGTCAAAGTCGT+CGG | + | chr8_3:48628422-48628441 | Msa1292380:intron | 40.0% | |
| ! | GTAGGGAGCGTAGAAAAATT+TGG | - | chr8_3:48628509-48628528 | None:intergenic | 40.0% |
| ATCACTCTTACTAGTGTAGC+AGG | + | chr8_3:48628642-48628661 | Msa1292380:intron | 40.0% | |
| CTGGAAACTGATGAATCCAT+TGG | - | chr8_3:48628700-48628719 | None:intergenic | 40.0% | |
| !! | ATGTTGATTCTGGGAGGAAA+CGG | - | chr8_3:48628747-48628766 | None:intergenic | 40.0% |
| ATCACTCTTACTACCGTAGC+AGG | + | chr8_3:48620396-48620415 | Msa1292380:CDS | 45.0% | |
| GATCGTGCAGACTGATACTT+GGG | - | chr8_3:48620432-48620451 | None:intergenic | 45.0% | |
| TATCAGTCTGCACGATCCAA+TGG | + | chr8_3:48620435-48620454 | Msa1292380:CDS | 45.0% | |
| !! | AACTGGTTGGTCTCCTTTAC+AGG | + | chr8_3:48620496-48620515 | Msa1292380:CDS | 45.0% |
| !! | ATTCTGGGACGATATTGAGG+TGG | - | chr8_3:48620546-48620565 | None:intergenic | 45.0% |
| GTTCCTGGGACGTTAATTCT+GGG | - | chr8_3:48620561-48620580 | None:intergenic | 45.0% | |
| TGTTCCTGGGACGTTAATTC+TGG | - | chr8_3:48620562-48620581 | None:intergenic | 45.0% | |
| !! | ATTTTAGGAGGTGGGCGTAA+CGG | - | chr8_3:48620606-48620625 | None:intergenic | 45.0% |
| AGTCTCAACCGTTATTGACC+TGG | - | chr8_3:48621207-48621226 | None:intergenic | 45.0% | |
| GACCTATAATTGTTCCACGC+AGG | + | chr8_3:48621810-48621829 | Msa1292380:intron | 45.0% | |
| ATATGAGTTCAGTTCCTGCG+TGG | - | chr8_3:48621827-48621846 | None:intergenic | 45.0% | |
| ACTCTATGGTTGCATCTCTG+AGG | + | chr8_3:48622408-48622427 | Msa1292380:intron | 45.0% | |
| CTCTATGGTTGCATCTCTGA+GGG | + | chr8_3:48622409-48622428 | Msa1292380:intron | 45.0% | |
| TCTATGGTTGCATCTCTGAG+GGG | + | chr8_3:48622410-48622429 | Msa1292380:intron | 45.0% | |
| CTTGCAGCAACAGAAACACA+AGG | - | chr8_3:48622567-48622586 | None:intergenic | 45.0% | |
| ! | CTTGTGTTTCTGTTGCTGCA+AGG | + | chr8_3:48622565-48622584 | Msa1292380:intron | 45.0% |
| TTGCCAAAGGAGGAGATTGT+TGG | + | chr8_3:48622862-48622881 | Msa1292380:intron | 45.0% | |
| !!! | GGAAAGTTTTGGAGGTGATC+AGG | + | chr8_3:48623113-48623132 | Msa1292380:intron | 45.0% |
| ACGAACCACAGAACCAGAAA+AGG | - | chr8_3:48623174-48623193 | None:intergenic | 45.0% | |
| ! | TGGTTCTGTGGTTCGTGAAA+TGG | + | chr8_3:48623178-48623197 | Msa1292380:intron | 45.0% |
| ACGGCTTCGGTGATTGAATT+AGG | - | chr8_3:48623277-48623296 | None:intergenic | 45.0% | |
| CCGAAGCCGTCAAACTAAAA+AGG | + | chr8_3:48623287-48623306 | Msa1292380:intron | 45.0% | |
| TCTGTTGTAAGGGAGTGAGA+TGG | + | chr8_3:48623544-48623563 | Msa1292380:intron | 45.0% | |
| CTGTTGTAAGGGAGTGAGAT+GGG | + | chr8_3:48623545-48623564 | Msa1292380:intron | 45.0% | |
| TGAGATGGGATCTCAGATCA+AGG | + | chr8_3:48623559-48623578 | Msa1292380:intron | 45.0% | |
| TCTCAGATCAAGGAGTTCCT+AGG | + | chr8_3:48623569-48623588 | Msa1292380:intron | 45.0% | |
| ! | TCCTAGGTTGAAGTCTAGAC+GGG | + | chr8_3:48623585-48623604 | Msa1292380:intron | 45.0% |
| !! | ACACTAGTGGATTTCCTTCC+TGG | + | chr8_3:48623665-48623684 | Msa1292380:intron | 45.0% |
| CACAACTTACCTACATCTGG+GGG | - | chr8_3:48623699-48623718 | None:intergenic | 45.0% | |
| CGACACAACTTACCTACATC+TGG | - | chr8_3:48623702-48623721 | None:intergenic | 45.0% | |
| GTAGGTAAGTTGTGTCGAAC+TGG | + | chr8_3:48623705-48623724 | Msa1292380:intron | 45.0% | |
| CTCTATGAGACTCTGAACAC+TGG | - | chr8_3:48624104-48624123 | None:intergenic | 45.0% | |
| !! | TACTGGTTCCTTCCACAATC+CGG | + | chr8_3:48624186-48624205 | Msa1292380:intron | 45.0% |
| ! | AACTCTCCTTGGAAGTGCAA+GGG | - | chr8_3:48624226-48624245 | None:intergenic | 45.0% |
| CTTGCGTGTATGCTTAGCAT+AGG | - | chr8_3:48624332-48624351 | None:intergenic | 45.0% | |
| CAGGTGTGAAAGTTACGTTG+AGG | + | chr8_3:48624611-48624630 | Msa1292380:intron | 45.0% | |
| TTACAGAAGGAATGGAAGCC+TGG | - | chr8_3:48624902-48624921 | None:intergenic | 45.0% | |
| GTTCATCAGAGTCTGAAGAC+TGG | - | chr8_3:48624967-48624986 | None:intergenic | 45.0% | |
| TACAGGGGCTAAAATGCTGA+TGG | + | chr8_3:48626394-48626413 | Msa1292380:intron | 45.0% | |
| AGAAACTACCCCACTACAGT+AGG | + | chr8_3:48626697-48626716 | Msa1292380:intron | 45.0% | |
| TACAAATAAGGACGCGCAAC+AGG | + | chr8_3:48626842-48626861 | Msa1292380:intron | 45.0% | |
| GTGACCAAGTAAATCTTGGC+CGG | + | chr8_3:48627586-48627605 | Msa1292380:intron | 45.0% | |
| TAGACCGGCCAAGATTTACT+TGG | - | chr8_3:48627593-48627612 | None:intergenic | 45.0% | |
| !!! | CTACCCCCTTTTTTCACGTT+AGG | + | chr8_3:48628269-48628288 | Msa1292380:intron | 45.0% |
| TTGCTTTACCATAGGCCCTA+CGG | - | chr8_3:48628310-48628329 | None:intergenic | 45.0% | |
| ATTGTGAAGAAGTAGGCCAG+AGG | - | chr8_3:48628333-48628352 | None:intergenic | 45.0% | |
| !! | GTTCCTGGGATGTTGATTCT+GGG | - | chr8_3:48628756-48628775 | None:intergenic | 45.0% |
| !! | TGTTCCTGGGATGTTGATTC+TGG | - | chr8_3:48628757-48628776 | None:intergenic | 45.0% |
| !! | TATAGAAAAAAATTATTTAA+TGG | - | chr8_3:48625625-48625644 | None:intergenic | 5.0% |
| !! | GATAAATATTAAATAAAATA+GGG | - | chr8_3:48626621-48626640 | None:intergenic | 5.0% |
| !! | TGATAAATATTAAATAAAAT+AGG | - | chr8_3:48626622-48626641 | None:intergenic | 5.0% |
| !! | AAATTATTAATTGAAAAAAT+AGG | + | chr8_3:48626658-48626677 | Msa1292380:intron | 5.0% |
| GGATCGTGCAGACTGATACT+TGG | - | chr8_3:48620433-48620452 | None:intergenic | 50.0% | |
| GTGTATAAGTTGTTGGGGGC+TGG | - | chr8_3:48620473-48620492 | None:intergenic | 50.0% | |
| !! | TTTTAGGAGGTGGGCGTAAC+GGG | - | chr8_3:48620605-48620624 | None:intergenic | 50.0% |
| ! | CTATGGTTGCATCTCTGAGG+GGG | + | chr8_3:48622411-48622430 | Msa1292380:intron | 50.0% |
| ! | TATGGTTGCATCTCTGAGGG+GGG | + | chr8_3:48622412-48622431 | Msa1292380:intron | 50.0% |
| AGGGGCTGTGATCTGTTGTA+AGG | + | chr8_3:48623533-48623552 | Msa1292380:intron | 50.0% | |
| GGGGCTGTGATCTGTTGTAA+GGG | + | chr8_3:48623534-48623553 | Msa1292380:intron | 50.0% | |
| ACCCGTCTAGACTTCAACCT+AGG | - | chr8_3:48623589-48623608 | None:intergenic | 50.0% | |
| AGGTTGAAGTCTAGACGGGT+AGG | + | chr8_3:48623589-48623608 | Msa1292380:intron | 50.0% | |
| ! | AGTGGATTTCCTTCCTGGCT+TGG | + | chr8_3:48623670-48623689 | Msa1292380:intron | 50.0% |
| ACATCTGCTTTCTGCGCATC+TGG | + | chr8_3:48623821-48623840 | Msa1292380:intron | 50.0% | |
| GACTACTTCCGGATTGTGGA+AGG | - | chr8_3:48624197-48624216 | None:intergenic | 50.0% | |
| ACAGGACTACTTCCGGATTG+TGG | - | chr8_3:48624201-48624220 | None:intergenic | 50.0% | |
| ! | ACTCTCCTTGGAAGTGCAAG+GGG | - | chr8_3:48624225-48624244 | None:intergenic | 50.0% |
| ! | GAACTCTCCTTGGAAGTGCA+AGG | - | chr8_3:48624227-48624246 | None:intergenic | 50.0% |
| ACTACTGCAGACATGGTGAG+TGG | + | chr8_3:48624782-48624801 | Msa1292380:intron | 50.0% | |
| AGACATGGTGAGTGGAGTAG+TGG | + | chr8_3:48624790-48624809 | Msa1292380:intron | 50.0% | |
| ! | GCTCGAGATAGACCTCGTTT+TGG | - | chr8_3:48627143-48627162 | None:intergenic | 50.0% |
| GTTGCTGCGAAGAGATAGAC+CGG | - | chr8_3:48627608-48627627 | None:intergenic | 50.0% | |
| CAAAATGACCGTAGGGCCTA+TGG | + | chr8_3:48628299-48628318 | Msa1292380:intron | 50.0% | |
| GCCTATGGTAAAGCAACCTC+TGG | + | chr8_3:48628314-48628333 | Msa1292380:intron | 50.0% | |
| ! | GCCAGAGGTTGCTTTACCAT+AGG | - | chr8_3:48628318-48628337 | None:intergenic | 50.0% |
| GATCGTGCAGACTGATGCTT+GGG | - | chr8_3:48628678-48628697 | None:intergenic | 50.0% | |
| CATCAGTCTGCACGATCCAA+TGG | + | chr8_3:48628681-48628700 | Msa1292380:CDS | 50.0% | |
| ATGTGTAGGCGGAGTTGTTG+GGG | - | chr8_3:48628724-48628743 | None:intergenic | 50.0% | |
| GATGTGTAGGCGGAGTTGTT+GGG | - | chr8_3:48628725-48628744 | None:intergenic | 50.0% | |
| ! | GGTGGCGGCGCTAAATATCT+AGG | - | chr8_3:48620525-48620544 | None:intergenic | 55.0% |
| ! | GGACGATATTGAGGTGGTGG+CGG | - | chr8_3:48620540-48620559 | None:intergenic | 55.0% |
| CTGGGACGATATTGAGGTGG+TGG | - | chr8_3:48620543-48620562 | None:intergenic | 55.0% | |
| CGTCCCAGAATTAACGTCCC+AGG | + | chr8_3:48620555-48620574 | Msa1292380:CDS | 55.0% | |
| TCCCAGGAACACCACACTCA+CGG | + | chr8_3:48620571-48620590 | Msa1292380:CDS | 55.0% | |
| ! | ATGGTTGCATCTCTGAGGGG+GGG | + | chr8_3:48622413-48622432 | Msa1292380:intron | 55.0% |
| TGAGGGGGGGTGATACTATG+AGG | + | chr8_3:48622426-48622445 | Msa1292380:intron | 55.0% | |
| AGTCTAGACGGGTAGGTCCT+AGG | + | chr8_3:48623596-48623615 | Msa1292380:intron | 55.0% | |
| AAGGGGGACAGGACTACTTC+CGG | - | chr8_3:48624208-48624227 | None:intergenic | 55.0% | |
| ! | CTCTCCTTGGAAGTGCAAGG+GGG | - | chr8_3:48624224-48624243 | None:intergenic | 55.0% |
| ! | CCACTGAAGAGCGCAGGAAA+AGG | - | chr8_3:48624835-48624854 | None:intergenic | 55.0% |
| ! | CCTTTTCCTGCGCTCTTCAG+TGG | + | chr8_3:48624832-48624851 | Msa1292380:intron | 55.0% |
| ! | GCTTATCCACTGAAGAGCGC+AGG | - | chr8_3:48624841-48624860 | None:intergenic | 55.0% |
| AGGACGCGCAACAGGATTGA+CGG | + | chr8_3:48626850-48626869 | Msa1292380:intron | 55.0% | |
| GGATCGTGCAGACTGATGCT+TGG | - | chr8_3:48628679-48628698 | None:intergenic | 55.0% | |
| TGTGTAGGCGGAGTTGTTGG+GGG | - | chr8_3:48628723-48628742 | None:intergenic | 55.0% | |
| GGATGTGTAGGCGGAGTTGT+TGG | - | chr8_3:48628726-48628745 | None:intergenic | 55.0% | |
| GGAGGAAACGGATGTGTAGG+CGG | - | chr8_3:48628735-48628754 | None:intergenic | 55.0% | |
| CTGGGAGGAAACGGATGTGT+AGG | - | chr8_3:48628738-48628757 | None:intergenic | 55.0% | |
| !! | CCTGGGATGTTGATTCTGGG+AGG | - | chr8_3:48628753-48628772 | None:intergenic | 55.0% |
| CCTCCCAGAATCAACATCCC+AGG | + | chr8_3:48628750-48628769 | Msa1292380:CDS | 55.0% | |
| CCCGTGAGTGTGGTGTTCCT+GGG | - | chr8_3:48620575-48620594 | None:intergenic | 60.0% | |
| CCCAGGAACACCACACTCAC+GGG | + | chr8_3:48620572-48620591 | Msa1292380:CDS | 60.0% | |
| ! | GCTTGGTAGCCCCCAGATGT+AGG | + | chr8_3:48623687-48623706 | Msa1292380:intron | 60.0% |
| ! | CTTGGAAGTGCAAGGGGGAC+AGG | - | chr8_3:48624219-48624238 | None:intergenic | 60.0% |
| CTGTCCCCCTTGCACTTCCA+AGG | + | chr8_3:48624217-48624236 | Msa1292380:intron | 60.0% | |
| GAGCGGAAAGACGGCTACGT+TGG | + | chr8_3:48626120-48626139 | Msa1292380:intron | 60.0% | |
| TCCCAGGAACACCACACCGA+CGG | + | chr8_3:48628766-48628785 | Msa1292380:CDS | 60.0% | |
| AATCGAAGAGGCCGTCGGTG+TGG | - | chr8_3:48628780-48628799 | None:intergenic | 60.0% | |
| GCCCGTGAGTGTGGTGTTCC+TGG | - | chr8_3:48620576-48620595 | None:intergenic | 65.0% | |
| TGGGGGCTACCAAGCCAGGA+AGG | - | chr8_3:48623682-48623701 | None:intergenic | 65.0% | |
| CATCTGGGGGCTACCAAGCC+AGG | - | chr8_3:48623686-48623705 | None:intergenic | 65.0% | |
| TAGGCGGAGTTGTTGGGGGC+TGG | - | chr8_3:48628719-48628738 | None:intergenic | 65.0% | |
| GCCGTCGGTGTGGTGTTCCT+GGG | - | chr8_3:48628770-48628789 | None:intergenic | 65.0% | |
| !! | GGGTGTCGAGCCCGTGAGTG+TGG | - | chr8_3:48620585-48620604 | None:intergenic | 70.0% |
| GGCCGTCGGTGTGGTGTTCC+TGG | - | chr8_3:48628771-48628790 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 48620372 | 48628800 | 48620372 | ID=Msa1292380;Name=Msa1292380 |
| chr8_3 | mRNA | 48620372 | 48628800 | 48620372 | ID=Msa1292380-mRNA-1;Parent=Msa1292380;Name=Msa1292380-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|1|0|0|2|0|126 |
| chr8_3 | exon | 48620372 | 48620604 | 48620372 | ID=Msa1292380-mRNA-1:exon:13464;Parent=Msa1292380-mRNA-1 |
| chr8_3 | exon | 48628656 | 48628800 | 48628656 | ID=Msa1292380-mRNA-1:exon:13465;Parent=Msa1292380-mRNA-1 |
| chr8_3 | CDS | 48620372 | 48620604 | 48620372 | ID=Msa1292380-mRNA-1:cds;Parent=Msa1292380-mRNA-1 |
| chr8_3 | CDS | 48628656 | 48628800 | 48628656 | ID=Msa1292380-mRNA-1:cds;Parent=Msa1292380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
