AlfalfaGEDB | Msa0074080

M. sativa cultivar zhongmu-4 / Msa0074080

KEGG: -
GO: GO:0006950 GO:0006952 GO:0008150 GO:0050896
PFAM: PF00967.20

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0074080	XP_013468975.1	92.361	144	11	0	1	144	1	144	1.91e-95	281

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0074080	sp\|P29063\|PR4B_TOBAC	72.263	137	38	0	8	144	9	145	3.05e-71	213

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0074080	A0A072VMG3	92.361	144	11	0	1	144	1	144	9.14e-96	281

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006700	Msa0074080	0.813691	2.251426e-51	-8.615850e-47
Msa0011720	Msa0074080	0.806493	8.009269e-50	-8.615850e-47
Msa0012780	Msa0074080	-0.803848	2.865446e-49	-8.615850e-47
Msa0032270	Msa0074080	0.818920	1.523433e-52	-8.615850e-47
Msa0040580	Msa0074080	0.807037	6.147512e-50	-8.615850e-47
Msa0055280	Msa0074080	0.808414	3.133768e-50	-8.615850e-47
Msa0055710	Msa0074080	0.800159	1.642839e-48	-8.615850e-47
Msa0074080	Msa0088550	0.827985	1.155790e-54	-8.615850e-47
Msa0074080	Msa0101060	0.827638	1.400586e-54	-8.615850e-47
Msa0074080	Msa0105340	0.805231	1.474991e-49	-8.615850e-47
Msa0074080	Msa0106120	-0.809826	1.561478e-50	-8.615850e-47
Msa0074080	Msa0127290	0.889217	2.952749e-73	-8.615850e-47
Msa0074080	Msa0135360	0.823873	1.095716e-53	-8.615850e-47
Msa0074080	Msa0139720	-0.812785	3.558958e-51	-8.615850e-47
Msa0074080	Msa0140910	0.817678	2.911159e-52	-8.615850e-47
Msa0074080	Msa0153430	0.824177	9.294633e-54	-8.615850e-47
Msa0074080	Msa0153440	0.809365	1.961492e-50	-8.615850e-47
Msa0074080	Msa0172410	0.891987	2.403562e-74	-8.615850e-47
Msa0074080	Msa0182640	0.809658	1.696945e-50	-8.615850e-47
Msa0074080	Msa0185640	-0.809996	1.435346e-50	-8.615850e-47
Msa0074080	Msa0190640	0.844534	7.121387e-59	-8.615850e-47
Msa0074080	Msa0193760	0.828740	7.601433e-55	-8.615850e-47
Msa0074080	Msa0197750	-0.801130	1.041041e-48	-8.615850e-47
Msa0074080	Msa0212310	0.800669	1.293156e-48	-8.615850e-47
Msa0074080	Msa0222660	0.803546	3.311260e-49	-8.615850e-47
Msa0074080	Msa0232860	0.828009	1.140425e-54	-8.615850e-47
Msa0074080	Msa0232910	0.839637	1.407014e-57	-8.615850e-47
Msa0074080	Msa0235550	0.862491	4.881646e-64	-8.615850e-47
Msa0074080	Msa0253370	0.811677	6.210436e-51	-8.615850e-47
Msa0074080	Msa0274520	0.850631	1.498751e-60	-8.615850e-47
Msa0074080	Msa0277280	-0.802805	4.712387e-49	-8.615850e-47
Msa0074080	Msa0282170	0.814392	1.577526e-51	-8.615850e-47
Msa0074080	Msa0292180	0.801907	7.215313e-49	-8.615850e-47
Msa0074080	Msa0301980	0.808768	2.632708e-50	-8.615850e-47
Msa0074080	Msa0326670	0.809366	1.960713e-50	-8.615850e-47
Msa0074080	Msa0342340	-0.807368	5.231078e-50	-8.615850e-47
Msa0074080	Msa0363440	0.800238	1.582848e-48	-8.615850e-47
Msa0074080	Msa0371540	0.810693	1.015324e-50	-8.615850e-47
Msa0074080	Msa0371570	0.837364	5.430193e-57	-8.615850e-47
Msa0074080	Msa0419990	0.839628	1.414276e-57	-8.615850e-47
Msa0074080	Msa0431830	0.805094	1.575943e-49	-8.615850e-47
Msa0074080	Msa0442850	0.811743	6.009470e-51	-8.615850e-47
Msa0074080	Msa0455260	0.831161	1.952703e-55	-8.615850e-47
Msa0074080	Msa0462590	0.806638	7.465906e-50	-8.615850e-47
Msa0074080	Msa0464900	0.803885	2.815578e-49	-8.615850e-47
Msa0074080	Msa0465930	0.845359	4.266823e-59	-8.615850e-47
Msa0074080	Msa0465970	0.838322	3.080520e-57	-8.615850e-47
Msa0074080	Msa0466060	0.821647	3.613356e-53	-8.615850e-47
Msa0074080	Msa0473240	0.805056	1.604995e-49	-8.615850e-47
Msa0074080	Msa0508650	0.803332	3.667111e-49	-8.615850e-47
Msa0074080	Msa0517330	0.828592	8.252611e-55	-8.615850e-47
Msa0074080	Msa0517340	0.821630	3.644963e-53	-8.615850e-47
Msa0074080	Msa0517350	0.804835	1.785146e-49	-8.615850e-47
Msa0074080	Msa0620640	0.834991	2.176308e-56	-8.615850e-47
Msa0074080	Msa0621890	0.807010	6.229376e-50	-8.615850e-47
Msa0074080	Msa0626190	0.826063	3.331228e-54	-8.615850e-47
Msa0074080	Msa0638320	0.809176	2.153964e-50	-8.615850e-47
Msa0074080	Msa0649970	0.811607	6.432753e-51	-8.615850e-47
Msa0074080	Msa0657670	0.808535	2.953585e-50	-8.615850e-47
Msa0074080	Msa0672810	0.809935	1.479675e-50	-8.615850e-47
Msa0074080	Msa0677270	0.804268	2.343188e-49	-8.615850e-47
Msa0074080	Msa0701030	0.811255	7.669912e-51	-8.615850e-47
Msa0074080	Msa0718470	0.838713	2.442258e-57	-8.615850e-47
Msa0074080	Msa0722930	0.807110	5.933179e-50	-8.615850e-47
Msa0074080	Msa0731710	0.811872	5.634115e-51	-8.615850e-47
Msa0074080	Msa0752580	0.804914	1.718632e-49	-8.615850e-47
Msa0074080	Msa0760890	0.803955	2.723153e-49	-8.615850e-47
Msa0074080	Msa0773610	0.811657	6.273582e-51	-8.615850e-47
Msa0074080	Msa0801100	0.840473	8.512357e-58	-8.615850e-47
Msa0074080	Msa0811000	0.817946	2.532537e-52	-8.615850e-47
Msa0074080	Msa0830900	0.804102	2.537610e-49	-8.615850e-47
Msa0074080	Msa0843280	0.812862	3.423554e-51	-8.615850e-47
Msa0074080	Msa0844900	0.801500	8.745380e-49	-8.615850e-47
Msa0074080	Msa0862020	0.806398	8.385763e-50	-8.615850e-47
Msa0074080	Msa0870620	0.801813	7.541499e-49	-8.615850e-47
Msa0074080	Msa0903730	0.828026	1.129973e-54	-8.615850e-47
Msa0074080	Msa0909710	0.828712	7.717997e-55	-8.615850e-47
Msa0074080	Msa0937940	0.816418	5.587594e-52	-8.615850e-47
Msa0074080	Msa0951720	0.830713	2.514620e-55	-8.615850e-47
Msa0074080	Msa1026760	0.822906	1.843727e-53	-8.615850e-47
Msa0074080	Msa1026790	0.820199	7.782060e-53	-8.615850e-47
Msa0074080	Msa1027290	0.803289	3.743113e-49	-8.615850e-47
Msa0074080	Msa1036390	0.823851	1.108961e-53	-8.615850e-47
Msa0074080	Msa1072350	0.823992	1.027394e-53	-8.615850e-47
Msa0074080	Msa1076680	0.824431	8.102456e-54	-8.615850e-47
Msa0074080	Msa1078740	0.803495	3.392791e-49	-8.615850e-47
Msa0074080	Msa1095480	0.805333	1.404585e-49	-8.615850e-47
Msa0074080	Msa1107800	0.809313	2.012362e-50	-8.615850e-47
Msa0074080	Msa1124540	-0.811468	6.896640e-51	-8.615850e-47
Msa0074080	Msa1132560	-0.816120	6.514089e-52	-8.615850e-47
Msa0074080	Msa1142500	0.811456	6.938300e-51	-8.615850e-47
Msa0074080	Msa1154160	0.803553	3.299080e-49	-8.615850e-47
Msa0074080	Msa1159360	0.826341	2.861330e-54	-8.615850e-47
Msa0074080	Msa1179120	0.805572	1.251155e-49	-8.615850e-47
Msa0074080	Msa1204980	-0.810642	1.041622e-50	-8.615850e-47
Msa0074080	Msa1205010	-0.813102	3.033848e-51	-8.615850e-47
Msa0074080	Msa1207480	-0.813248	2.817519e-51	-8.615850e-47
Msa0074080	Msa1217810	0.806411	8.335439e-50	-8.615850e-47
Msa0074080	Msa1228210	0.835577	1.547621e-56	-8.615850e-47
Msa0074080	Msa1256540	-0.808455	3.071610e-50	-8.615850e-47
Msa0074080	Msa1258280	0.802550	5.318979e-49	-8.615850e-47
Msa0074080	Msa1265960	0.807838	4.156142e-50	-8.615850e-47
Msa0074080	Msa1271280	0.820221	7.690211e-53	-8.615850e-47
Msa0074080	Msa1279860	0.810689	1.017421e-50	-8.615850e-47
Msa0074080	Msa1287560	0.813360	2.662945e-51	-8.615850e-47
Msa0074080	Msa1292380	0.807200	5.678326e-50	-8.615850e-47
Msa0074080	Msa1292730	0.802694	4.967639e-49	-8.615850e-47
Msa0074080	Msa1296960	-0.811214	7.831623e-51	-8.615850e-47
Msa0074080	Msa1329990	0.802980	4.336381e-49	-8.615850e-47
Msa0074080	Msa1396830	0.806833	6.787834e-50	-8.615850e-47
Msa0074080	Msa1411070	0.816505	5.341461e-52	-8.615850e-47
Msa0074080	Msa1439120	0.803379	3.585288e-49	-8.615850e-47
Msa0074080	Msa1440220	0.805459	1.321130e-49	-8.615850e-47
Msa0074080	Msa1447440	0.829604	4.690578e-55	-8.615850e-47
Msa0074080	Msa1450020	0.816455	5.481926e-52	-8.615850e-47
Msa0074080	Msa1453710	0.807773	4.291006e-50	-8.615850e-47
Msa0074080	Msa1460890	0.817832	2.687103e-52	-8.615850e-47
Msa0074080	Msa1461250	-0.816981	4.178912e-52	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0074080	MtrunA17_Chr1g0190661	92.361	144	11	0	1	144	1	144	1.76e-99	281
Msa0074080	MtrunA17_Chr1g0190671	92.361	144	11	0	1	144	1	144	1.56e-98	279
Msa0074080	MtrunA17_Chr1g0190651	87.500	144	18	0	1	144	1	144	3.30e-92	263
Msa0074080	MtrunA17_Chr7g0274181	71.304	115	33	0	30	144	70	184	4.07e-60	184
Msa0074080	MtrunA17_Chr1g0190641	59.124	137	55	1	8	144	4	139	7.88e-58	176
Msa0074080	MtrunA17_Chr6g0484021	48.026	152	59	4	10	144	31	179	1.41e-42	148
Msa0074080	MtrunA17_Chr6g0483971	48.175	137	64	3	10	144	11	142	1.49e-39	134
Msa0074080	MtrunA17_Chr6g0484041	45.333	150	62	5	10	144	23	167	8.42e-35	127
Msa0074080	MtrunA17_Chr6g0484031	42.254	142	68	3	10	144	11	145	8.38e-34	123

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0074080	AT3G04720.1	70.248	121	36	0	24	144	71	191	1.61e-61	188

Find 50 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TGTGGAATAATAGGGGATTT+TGG	0.183068	1_2:+48254717	Msa0074080:three_prime_UTR
ACTTGCTATTGTGGAATAAT+AGG	0.188926	1_2:+48254708	Msa0074080:three_prime_UTR
ACAACCCTCAGAATATTAAT+TGG	0.199861	1_2:+48253697	Msa0074080:CDS
CTTGCTATTGTGGAATAATA+GGG	0.358615	1_2:+48254709	Msa0074080:three_prime_UTR
CAAGGGCTGGTTTGCATCCC+AGG	0.360799	1_2:-48253751	None:intergenic
ACAGAGAACTTTGAGCTTGT+TGG	0.365729	1_2:+48253599	Msa0074080:CDS
AAAGAAGTAAATTCGATGTT+AGG	0.371517	1_2:+48254740	Msa0074080:three_prime_UTR
CTCTCTACCACGAGGGCCCT+GGG	0.401142	1_2:-48253814	None:intergenic
CAACCCTCAGAATATTAATT+GGG	0.408460	1_2:+48253698	Msa0074080:CDS
CAGGTGACAAATACTGCAAC+TGG	0.420771	1_2:+48254398	Msa0074080:intron
ACTCTCTACCACGAGGGCCC+TGG	0.449243	1_2:-48253815	None:intergenic
TAACTGTAAGGTGACCCTTC+TGG	0.462881	1_2:-48254520	None:intergenic
AGGGCCCTGGGGTCCACAAA+AGG	0.466880	1_2:-48253802	None:intergenic
TACTATATAACTTGCTATTG+TGG	0.469574	1_2:+48254699	Msa0074080:three_prime_UTR
GTCAGAGTGCAAACGGTGTA+AGG	0.476091	1_2:+48253658	Msa0074080:CDS
CCAGTGTATACTGTGCTACC+TGG	0.477513	1_2:+48253733	Msa0074080:CDS
TCAAATTGATACCAATGGAC+AGG	0.479120	1_2:+48254493	Msa0074080:CDS
TAATATTCTGAGGGTTGTAA+AGG	0.485495	1_2:-48253692	None:intergenic
CTGGGATGCAAACCAGCCCT+TGG	0.489658	1_2:+48253752	Msa0074080:CDS
CGCCAATGGTGGATTAGACT+TGG	0.495624	1_2:+48254454	Msa0074080:CDS
CTAATCCACCATTGGCGCAC+TGG	0.495852	1_2:-48254448	None:intergenic
GTCTTGTGGCAAGTGCTTGA+GGG	0.497781	1_2:+48253836	Msa0074080:CDS
CAAAGACATAGTTAACTGTA+AGG	0.501363	1_2:-48254532	None:intergenic
AGCAGTGCTACACGTATACT+TGG	0.514144	1_2:+48254636	Msa0074080:three_prime_UTR
AGTCTTGTGGCAAGTGCTTG+AGG	0.518693	1_2:+48253835	Msa0074080:CDS
TAATCCCAATTAATATTCTG+AGG	0.523387	1_2:-48253702	None:intergenic
TTCAATCAAATTGATACCAA+TGG	0.541175	1_2:+48254488	Msa0074080:CDS
CTTCTGGTAACCCTGTCCAT+TGG	0.545362	1_2:-48254504	None:intergenic
GTGAATGGTCAGAGTGCAAA+CGG	0.554003	1_2:+48253651	Msa0074080:CDS
TATTCTGAGGGTTGTAAAGG+TGG	0.557673	1_2:-48253689	None:intergenic
ATCCAAGTCTAATCCACCAT+TGG	0.563000	1_2:-48254456	None:intergenic
AATGGACAGGGTTACCAGAA+GGG	0.563174	1_2:+48254506	Msa0074080:CDS
ATAGTGGACCAGTGCGCCAA+TGG	0.565572	1_2:+48254440	Msa0074080:CDS
ATGCAAACCAGCCCTTGGAA+TGG	0.572438	1_2:+48253757	Msa0074080:CDS
AATCCCAATTAATATTCTGA+GGG	0.576550	1_2:-48253701	None:intergenic
GTGGACCAGTGCGCCAATGG+TGG	0.584793	1_2:+48254443	Msa0074080:CDS
CAAATTGATACCAATGGACA+GGG	0.591064	1_2:+48254494	Msa0074080:CDS
TTGCTATTGTGGAATAATAG+GGG	0.594706	1_2:+48254710	Msa0074080:three_prime_UTR
TCAAGTAACAGTGAGAATAG+TGG	0.598835	1_2:+48254424	Msa0074080:CDS
CAGTGTATACTGTGCTACCT+GGG	0.602353	1_2:+48253734	Msa0074080:CDS
TGTGTTTCATAGTAGAAGCA+TGG	0.611414	1_2:-48253552	None:intergenic
CAATGGACAGGGTTACCAGA+AGG	0.617429	1_2:+48254505	Msa0074080:CDS
TGTGGACCCCAGGGCCCTCG+TGG	0.633299	1_2:+48253807	Msa0074080:CDS
GTGGGAACGATGTTAGTGAA+TGG	0.656794	1_2:+48253636	Msa0074080:CDS
TCTCTACCACGAGGGCCCTG+GGG	0.658114	1_2:-48253813	None:intergenic
TCACTAACATCGTTCCCACA+AGG	0.670804	1_2:-48253632	None:intergenic
CCAGGTAGCACAGTATACAC+TGG	0.672657	1_2:-48253733	None:intergenic
CCTCGTGGTAGAGAGTCTTG+TGG	0.684944	1_2:+48253822	Msa0074080:CDS
CACAAGACTCTCTACCACGA+GGG	0.694332	1_2:-48253821	None:intergenic
CCACAAGACTCTCTACCACG+AGG	0.710327	1_2:-48253822	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TTTATAACACATTTATAATT+AGG	+	chr1_2:48254107-48254126	Msa0074080:intron	10.0%
!!!	GTTTTATTTATTGTATTATT+AGG	-	chr1_2:48254615-48254634	None:intergenic	10.0%
!!	TTTATAACACATTTATAATT+AGG	+	chr1_2:48254107-48254126	Msa0074080:intron	10.0%
!!!	GTTTTATTTATTGTATTATT+AGG	-	chr1_2:48254615-48254634	None:intergenic	10.0%
!!!	TTTTATAAAATGAGTAAGTA+CGG	-	chr1_2:48253867-48253886	None:intergenic	15.0%
!!	ACTATCAAAAGTAAAAAAAA+GGG	-	chr1_2:48254353-48254372	None:intergenic	15.0%
!!	AACTATCAAAAGTAAAAAAA+AGG	-	chr1_2:48254354-48254373	None:intergenic	15.0%
!!!	TTTTATAAAATGAGTAAGTA+CGG	-	chr1_2:48253867-48253886	None:intergenic	15.0%
!!	ACTATCAAAAGTAAAAAAAA+GGG	-	chr1_2:48254353-48254372	None:intergenic	15.0%
!!	AACTATCAAAAGTAAAAAAA+AGG	-	chr1_2:48254354-48254373	None:intergenic	15.0%
!!	ACCTAAACACATTTATAATT+GGG	+	chr1_2:48254030-48254049	Msa0074080:intron	20.0%
!!	GATAGTTGAATTAATATTAG+TGG	+	chr1_2:48254367-48254386	Msa0074080:intron	20.0%
!!	ACCTAAACACATTTATAATT+GGG	+	chr1_2:48254030-48254049	Msa0074080:intron	20.0%
!!	GATAGTTGAATTAATATTAG+TGG	+	chr1_2:48254367-48254386	Msa0074080:intron	20.0%
!	AACACACAAAAAAGAGAAAA+TGG	+	chr1_2:48253569-48253588	Msa0074080:exon	25.0%
!	AATCCCAATTAATATTCTGA+GGG	-	chr1_2:48253704-48253723	None:intergenic	25.0%
!	TAATCCCAATTAATATTCTG+AGG	-	chr1_2:48253705-48253724	None:intergenic	25.0%
!	GACCTAAACACATTTATAAT+TGG	+	chr1_2:48254029-48254048	Msa0074080:intron	25.0%
!	ACCCAATTATAAATGTGTTT+AGG	-	chr1_2:48254034-48254053	None:intergenic	25.0%
!!!	ATCTCTATGAGATTTTTTGT+CGG	+	chr1_2:48254219-48254238	Msa0074080:intron	25.0%
!!!	TCAAGGAGATTTTTTTATGT+GGG	+	chr1_2:48254275-48254294	Msa0074080:intron	25.0%
!	TTCAATCAAATTGATACCAA+TGG	+	chr1_2:48254488-48254507	Msa0074080:CDS	25.0%
!!!	TACTATATAACTTGCTATTG+TGG	+	chr1_2:48254699-48254718	Msa0074080:three_prime_UTR	25.0%
!	AAAGAAGTAAATTCGATGTT+AGG	+	chr1_2:48254740-48254759	Msa0074080:three_prime_UTR	25.0%
!!	CTTAATTTTAAGCGTTTTGT+CGG	+	chr1_2:48254792-48254811	Msa0074080:three_prime_UTR	25.0%
!	AACACACAAAAAAGAGAAAA+TGG	+	chr1_2:48253569-48253588	Msa0074080:exon	25.0%
!	AATCCCAATTAATATTCTGA+GGG	-	chr1_2:48253704-48253723	None:intergenic	25.0%
!	TAATCCCAATTAATATTCTG+AGG	-	chr1_2:48253705-48253724	None:intergenic	25.0%
!	GACCTAAACACATTTATAAT+TGG	+	chr1_2:48254029-48254048	Msa0074080:intron	25.0%
!	ACCCAATTATAAATGTGTTT+AGG	-	chr1_2:48254034-48254053	None:intergenic	25.0%
!!!	ATCTCTATGAGATTTTTTGT+CGG	+	chr1_2:48254219-48254238	Msa0074080:intron	25.0%
!!!	TCAAGGAGATTTTTTTATGT+GGG	+	chr1_2:48254275-48254294	Msa0074080:intron	25.0%
!	TTCAATCAAATTGATACCAA+TGG	+	chr1_2:48254488-48254507	Msa0074080:CDS	25.0%
!!!	TACTATATAACTTGCTATTG+TGG	+	chr1_2:48254699-48254718	Msa0074080:three_prime_UTR	25.0%
!	AAAGAAGTAAATTCGATGTT+AGG	+	chr1_2:48254740-48254759	Msa0074080:three_prime_UTR	25.0%
!!	CTTAATTTTAAGCGTTTTGT+CGG	+	chr1_2:48254792-48254811	Msa0074080:three_prime_UTR	25.0%
!	TAATATTCTGAGGGTTGTAA+AGG	-	chr1_2:48253695-48253714	None:intergenic	30.0%
	ACAACCCTCAGAATATTAAT+TGG	+	chr1_2:48253697-48253716	Msa0074080:CDS	30.0%
	CAACCCTCAGAATATTAATT+GGG	+	chr1_2:48253698-48253717	Msa0074080:CDS	30.0%
!	ATTGGGTCATAAATCGTTTT+CGG	+	chr1_2:48254047-48254066	Msa0074080:intron	30.0%
!	ATTAGGTCATAAACCGTTTT+CGG	+	chr1_2:48254124-48254143	Msa0074080:intron	30.0%
!!!	TCTCTATGAGATTTTTTGTC+GGG	+	chr1_2:48254220-48254239	Msa0074080:intron	30.0%
!!	ATTCAACTCAGTTTTAGTCA+AGG	+	chr1_2:48254258-48254277	Msa0074080:intron	30.0%
!!!	GTCAAGGAGATTTTTTTATG+TGG	+	chr1_2:48254274-48254293	Msa0074080:intron	30.0%
!	AATATTAGTGGTGATGATAC+AGG	+	chr1_2:48254379-48254398	Msa0074080:intron	30.0%
	CAAAGACATAGTTAACTGTA+AGG	-	chr1_2:48254535-48254554	None:intergenic	30.0%
!!	ACTTGCTATTGTGGAATAAT+AGG	+	chr1_2:48254708-48254727	Msa0074080:three_prime_UTR	30.0%
!!	CTTGCTATTGTGGAATAATA+GGG	+	chr1_2:48254709-48254728	Msa0074080:three_prime_UTR	30.0%
!	TTGCTATTGTGGAATAATAG+GGG	+	chr1_2:48254710-48254729	Msa0074080:three_prime_UTR	30.0%
!	TAATATTCTGAGGGTTGTAA+AGG	-	chr1_2:48253695-48253714	None:intergenic	30.0%
	ACAACCCTCAGAATATTAAT+TGG	+	chr1_2:48253697-48253716	Msa0074080:CDS	30.0%
	CAACCCTCAGAATATTAATT+GGG	+	chr1_2:48253698-48253717	Msa0074080:CDS	30.0%
!	ATTGGGTCATAAATCGTTTT+CGG	+	chr1_2:48254047-48254066	Msa0074080:intron	30.0%
!	ATTAGGTCATAAACCGTTTT+CGG	+	chr1_2:48254124-48254143	Msa0074080:intron	30.0%
!!!	TCTCTATGAGATTTTTTGTC+GGG	+	chr1_2:48254220-48254239	Msa0074080:intron	30.0%
!!	ATTCAACTCAGTTTTAGTCA+AGG	+	chr1_2:48254258-48254277	Msa0074080:intron	30.0%
!!!	GTCAAGGAGATTTTTTTATG+TGG	+	chr1_2:48254274-48254293	Msa0074080:intron	30.0%
!	AATATTAGTGGTGATGATAC+AGG	+	chr1_2:48254379-48254398	Msa0074080:intron	30.0%
	CAAAGACATAGTTAACTGTA+AGG	-	chr1_2:48254535-48254554	None:intergenic	30.0%
!!	ACTTGCTATTGTGGAATAAT+AGG	+	chr1_2:48254708-48254727	Msa0074080:three_prime_UTR	30.0%
!!	CTTGCTATTGTGGAATAATA+GGG	+	chr1_2:48254709-48254728	Msa0074080:three_prime_UTR	30.0%
!	TTGCTATTGTGGAATAATAG+GGG	+	chr1_2:48254710-48254729	Msa0074080:three_prime_UTR	30.0%
	TGTGTTTCATAGTAGAAGCA+TGG	-	chr1_2:48253555-48253574	None:intergenic	35.0%
!!!	TTGGTTTTGTGTTTCCTTGT+GGG	+	chr1_2:48253618-48253637	Msa0074080:CDS	35.0%
!!	TACTTTTTACGCCATTCCAA+GGG	-	chr1_2:48253771-48253790	None:intergenic	35.0%
!!	ATACTTTTTACGCCATTCCA+AGG	-	chr1_2:48253772-48253791	None:intergenic	35.0%
	TTGGAATGGCGTAAAAAGTA+TGG	+	chr1_2:48253771-48253790	Msa0074080:CDS	35.0%
!	AATGGCGTAAAAAGTATGGT+TGG	+	chr1_2:48253775-48253794	Msa0074080:CDS	35.0%
	TCATAGAAACAAGCCGAAAA+CGG	-	chr1_2:48254063-48254082	None:intergenic	35.0%
!!!	CTCTATGAGATTTTTTGTCG+GGG	+	chr1_2:48254221-48254240	Msa0074080:intron	35.0%
!!!	TCTATGAGATTTTTTGTCGG+GGG	+	chr1_2:48254222-48254241	Msa0074080:intron	35.0%
	AAGTAAAAAAAAGGGCAACC+CGG	-	chr1_2:48254345-48254364	None:intergenic	35.0%
	TCAAGTAACAGTGAGAATAG+TGG	+	chr1_2:48254424-48254443	Msa0074080:CDS	35.0%
	TCAAATTGATACCAATGGAC+AGG	+	chr1_2:48254493-48254512	Msa0074080:CDS	35.0%
	CAAATTGATACCAATGGACA+GGG	+	chr1_2:48254494-48254513	Msa0074080:CDS	35.0%
!	TGTGGAATAATAGGGGATTT+TGG	+	chr1_2:48254717-48254736	Msa0074080:three_prime_UTR	35.0%
	TGTGTTTCATAGTAGAAGCA+TGG	-	chr1_2:48253555-48253574	None:intergenic	35.0%
!!!	TTGGTTTTGTGTTTCCTTGT+GGG	+	chr1_2:48253618-48253637	Msa0074080:CDS	35.0%
!!	TACTTTTTACGCCATTCCAA+GGG	-	chr1_2:48253771-48253790	None:intergenic	35.0%
!!	ATACTTTTTACGCCATTCCA+AGG	-	chr1_2:48253772-48253791	None:intergenic	35.0%
	TTGGAATGGCGTAAAAAGTA+TGG	+	chr1_2:48253771-48253790	Msa0074080:CDS	35.0%
!	AATGGCGTAAAAAGTATGGT+TGG	+	chr1_2:48253775-48253794	Msa0074080:CDS	35.0%
	TCATAGAAACAAGCCGAAAA+CGG	-	chr1_2:48254063-48254082	None:intergenic	35.0%
!!!	CTCTATGAGATTTTTTGTCG+GGG	+	chr1_2:48254221-48254240	Msa0074080:intron	35.0%
!!!	TCTATGAGATTTTTTGTCGG+GGG	+	chr1_2:48254222-48254241	Msa0074080:intron	35.0%
	AAGTAAAAAAAAGGGCAACC+CGG	-	chr1_2:48254345-48254364	None:intergenic	35.0%
	TCAAGTAACAGTGAGAATAG+TGG	+	chr1_2:48254424-48254443	Msa0074080:CDS	35.0%
	TCAAATTGATACCAATGGAC+AGG	+	chr1_2:48254493-48254512	Msa0074080:CDS	35.0%
	CAAATTGATACCAATGGACA+GGG	+	chr1_2:48254494-48254513	Msa0074080:CDS	35.0%
!	TGTGGAATAATAGGGGATTT+TGG	+	chr1_2:48254717-48254736	Msa0074080:three_prime_UTR	35.0%
	ACAGAGAACTTTGAGCTTGT+TGG	+	chr1_2:48253599-48253618	Msa0074080:CDS	40.0%
!!!	GTTGGTTTTGTGTTTCCTTG+TGG	+	chr1_2:48253617-48253636	Msa0074080:CDS	40.0%
!	TATTCTGAGGGTTGTAAAGG+TGG	-	chr1_2:48253692-48253711	None:intergenic	40.0%
	ATCCAAGTCTAATCCACCAT+TGG	-	chr1_2:48254459-48254478	None:intergenic	40.0%
	ACAGAGAACTTTGAGCTTGT+TGG	+	chr1_2:48253599-48253618	Msa0074080:CDS	40.0%
!!!	GTTGGTTTTGTGTTTCCTTG+TGG	+	chr1_2:48253617-48253636	Msa0074080:CDS	40.0%
!	TATTCTGAGGGTTGTAAAGG+TGG	-	chr1_2:48253692-48253711	None:intergenic	40.0%
	ATCCAAGTCTAATCCACCAT+TGG	-	chr1_2:48254459-48254478	None:intergenic	40.0%
	TCACTAACATCGTTCCCACA+AGG	-	chr1_2:48253635-48253654	None:intergenic	45.0%
	GTGGGAACGATGTTAGTGAA+TGG	+	chr1_2:48253636-48253655	Msa0074080:CDS	45.0%
	GTGAATGGTCAGAGTGCAAA+CGG	+	chr1_2:48253651-48253670	Msa0074080:CDS	45.0%
	CAGTGTATACTGTGCTACCT+GGG	+	chr1_2:48253734-48253753	Msa0074080:CDS	45.0%
!	TATGGTTGGACTGCCTTTTG+TGG	+	chr1_2:48253789-48253808	Msa0074080:CDS	45.0%
	CAGGTGACAAATACTGCAAC+TGG	+	chr1_2:48254398-48254417	Msa0074080:intron	45.0%
	AATGGACAGGGTTACCAGAA+GGG	+	chr1_2:48254506-48254525	Msa0074080:CDS	45.0%
	TAACTGTAAGGTGACCCTTC+TGG	-	chr1_2:48254523-48254542	None:intergenic	45.0%
	AGCAGTGCTACACGTATACT+TGG	+	chr1_2:48254636-48254655	Msa0074080:three_prime_UTR	45.0%
	TCACTAACATCGTTCCCACA+AGG	-	chr1_2:48253635-48253654	None:intergenic	45.0%
	GTGGGAACGATGTTAGTGAA+TGG	+	chr1_2:48253636-48253655	Msa0074080:CDS	45.0%
	GTGAATGGTCAGAGTGCAAA+CGG	+	chr1_2:48253651-48253670	Msa0074080:CDS	45.0%
	CAGTGTATACTGTGCTACCT+GGG	+	chr1_2:48253734-48253753	Msa0074080:CDS	45.0%
!	TATGGTTGGACTGCCTTTTG+TGG	+	chr1_2:48253789-48253808	Msa0074080:CDS	45.0%
	CAGGTGACAAATACTGCAAC+TGG	+	chr1_2:48254398-48254417	Msa0074080:intron	45.0%
	AATGGACAGGGTTACCAGAA+GGG	+	chr1_2:48254506-48254525	Msa0074080:CDS	45.0%
	TAACTGTAAGGTGACCCTTC+TGG	-	chr1_2:48254523-48254542	None:intergenic	45.0%
	AGCAGTGCTACACGTATACT+TGG	+	chr1_2:48254636-48254655	Msa0074080:three_prime_UTR	45.0%
	GTCAGAGTGCAAACGGTGTA+AGG	+	chr1_2:48253658-48253677	Msa0074080:CDS	50.0%
	CCAGGTAGCACAGTATACAC+TGG	-	chr1_2:48253736-48253755	None:intergenic	50.0%
	CCAGTGTATACTGTGCTACC+TGG	+	chr1_2:48253733-48253752	Msa0074080:CDS	50.0%
	ATGCAAACCAGCCCTTGGAA+TGG	+	chr1_2:48253757-48253776	Msa0074080:CDS	50.0%
!	TTTTACGCCATTCCAAGGGC+TGG	-	chr1_2:48253767-48253786	None:intergenic	50.0%
	CACAAGACTCTCTACCACGA+GGG	-	chr1_2:48253824-48253843	None:intergenic	50.0%
!	AGTCTTGTGGCAAGTGCTTG+AGG	+	chr1_2:48253835-48253854	Msa0074080:CDS	50.0%
	GTCTTGTGGCAAGTGCTTGA+GGG	+	chr1_2:48253836-48253855	Msa0074080:CDS	50.0%
!!	CGCCAATGGTGGATTAGACT+TGG	+	chr1_2:48254454-48254473	Msa0074080:CDS	50.0%
	CTTCTGGTAACCCTGTCCAT+TGG	-	chr1_2:48254507-48254526	None:intergenic	50.0%
	CAATGGACAGGGTTACCAGA+AGG	+	chr1_2:48254505-48254524	Msa0074080:CDS	50.0%
	GTCAGAGTGCAAACGGTGTA+AGG	+	chr1_2:48253658-48253677	Msa0074080:CDS	50.0%
	CCAGGTAGCACAGTATACAC+TGG	-	chr1_2:48253736-48253755	None:intergenic	50.0%
	CCAGTGTATACTGTGCTACC+TGG	+	chr1_2:48253733-48253752	Msa0074080:CDS	50.0%
	ATGCAAACCAGCCCTTGGAA+TGG	+	chr1_2:48253757-48253776	Msa0074080:CDS	50.0%
!	TTTTACGCCATTCCAAGGGC+TGG	-	chr1_2:48253767-48253786	None:intergenic	50.0%
	CACAAGACTCTCTACCACGA+GGG	-	chr1_2:48253824-48253843	None:intergenic	50.0%
!	AGTCTTGTGGCAAGTGCTTG+AGG	+	chr1_2:48253835-48253854	Msa0074080:CDS	50.0%
	GTCTTGTGGCAAGTGCTTGA+GGG	+	chr1_2:48253836-48253855	Msa0074080:CDS	50.0%
!!	CGCCAATGGTGGATTAGACT+TGG	+	chr1_2:48254454-48254473	Msa0074080:CDS	50.0%
	CTTCTGGTAACCCTGTCCAT+TGG	-	chr1_2:48254507-48254526	None:intergenic	50.0%
	CAATGGACAGGGTTACCAGA+AGG	+	chr1_2:48254505-48254524	Msa0074080:CDS	50.0%
!	ACTGCCTTTTGTGGACCCCA+GGG	+	chr1_2:48253798-48253817	Msa0074080:CDS	55.0%
	CCACAAGACTCTCTACCACG+AGG	-	chr1_2:48253825-48253844	None:intergenic	55.0%
	CCTCGTGGTAGAGAGTCTTG+TGG	+	chr1_2:48253822-48253841	Msa0074080:CDS	55.0%
	ATGTGGGAGCTTCACCTTCC+CGG	+	chr1_2:48254291-48254310	Msa0074080:intron	55.0%
	CTGAAGCTCCCGCATATGCA+GGG	-	chr1_2:48254318-48254337	None:intergenic	55.0%
	ACTGAAGCTCCCGCATATGC+AGG	-	chr1_2:48254319-48254338	None:intergenic	55.0%
!!	ATAGTGGACCAGTGCGCCAA+TGG	+	chr1_2:48254440-48254459	Msa0074080:CDS	55.0%
	CTAATCCACCATTGGCGCAC+TGG	-	chr1_2:48254451-48254470	None:intergenic	55.0%
!	ACTGCCTTTTGTGGACCCCA+GGG	+	chr1_2:48253798-48253817	Msa0074080:CDS	55.0%
	CCACAAGACTCTCTACCACG+AGG	-	chr1_2:48253825-48253844	None:intergenic	55.0%
	CCTCGTGGTAGAGAGTCTTG+TGG	+	chr1_2:48253822-48253841	Msa0074080:CDS	55.0%
	ATGTGGGAGCTTCACCTTCC+CGG	+	chr1_2:48254291-48254310	Msa0074080:intron	55.0%
	CTGAAGCTCCCGCATATGCA+GGG	-	chr1_2:48254318-48254337	None:intergenic	55.0%
	ACTGAAGCTCCCGCATATGC+AGG	-	chr1_2:48254319-48254338	None:intergenic	55.0%
!!	ATAGTGGACCAGTGCGCCAA+TGG	+	chr1_2:48254440-48254459	Msa0074080:CDS	55.0%
	CTAATCCACCATTGGCGCAC+TGG	-	chr1_2:48254451-48254470	None:intergenic	55.0%
!!	CAAGGGCTGGTTTGCATCCC+AGG	-	chr1_2:48253754-48253773	None:intergenic	60.0%
	CTGGGATGCAAACCAGCCCT+TGG	+	chr1_2:48253752-48253771	Msa0074080:CDS	60.0%
!	GACTGCCTTTTGTGGACCCC+AGG	+	chr1_2:48253797-48253816	Msa0074080:CDS	60.0%
	CTTCCCGGACCCTGCATATG+CGG	+	chr1_2:48254306-48254325	Msa0074080:intron	60.0%
	TTCCCGGACCCTGCATATGC+GGG	+	chr1_2:48254307-48254326	Msa0074080:intron	60.0%
	ATGCGGGAGCTTCAGTGCAC+CGG	+	chr1_2:48254323-48254342	Msa0074080:intron	60.0%
!!	CAAGGGCTGGTTTGCATCCC+AGG	-	chr1_2:48253754-48253773	None:intergenic	60.0%
	CTGGGATGCAAACCAGCCCT+TGG	+	chr1_2:48253752-48253771	Msa0074080:CDS	60.0%
!	GACTGCCTTTTGTGGACCCC+AGG	+	chr1_2:48253797-48253816	Msa0074080:CDS	60.0%
	CTTCCCGGACCCTGCATATG+CGG	+	chr1_2:48254306-48254325	Msa0074080:intron	60.0%
	TTCCCGGACCCTGCATATGC+GGG	+	chr1_2:48254307-48254326	Msa0074080:intron	60.0%
	ATGCGGGAGCTTCAGTGCAC+CGG	+	chr1_2:48254323-48254342	Msa0074080:intron	60.0%
	AGGGCCCTGGGGTCCACAAA+AGG	-	chr1_2:48253805-48253824	None:intergenic	65.0%
	TCTCTACCACGAGGGCCCTG+GGG	-	chr1_2:48253816-48253835	None:intergenic	65.0%
	CTCTCTACCACGAGGGCCCT+GGG	-	chr1_2:48253817-48253836	None:intergenic	65.0%
	ACTCTCTACCACGAGGGCCC+TGG	-	chr1_2:48253818-48253837	None:intergenic	65.0%
	CGCATATGCAGGGTCCGGGA+AGG	-	chr1_2:48254308-48254327	None:intergenic	65.0%
	CTCCCGCATATGCAGGGTCC+GGG	-	chr1_2:48254312-48254331	None:intergenic	65.0%
	GCTCCCGCATATGCAGGGTC+CGG	-	chr1_2:48254313-48254332	None:intergenic	65.0%
	TGCGGGAGCTTCAGTGCACC+GGG	+	chr1_2:48254324-48254343	Msa0074080:intron	65.0%
	GTGGACCAGTGCGCCAATGG+TGG	+	chr1_2:48254443-48254462	Msa0074080:CDS	65.0%
	AGGGCCCTGGGGTCCACAAA+AGG	-	chr1_2:48253805-48253824	None:intergenic	65.0%
	TCTCTACCACGAGGGCCCTG+GGG	-	chr1_2:48253816-48253835	None:intergenic	65.0%
	CTCTCTACCACGAGGGCCCT+GGG	-	chr1_2:48253817-48253836	None:intergenic	65.0%
	ACTCTCTACCACGAGGGCCC+TGG	-	chr1_2:48253818-48253837	None:intergenic	65.0%
	CGCATATGCAGGGTCCGGGA+AGG	-	chr1_2:48254308-48254327	None:intergenic	65.0%
	CTCCCGCATATGCAGGGTCC+GGG	-	chr1_2:48254312-48254331	None:intergenic	65.0%
	GCTCCCGCATATGCAGGGTC+CGG	-	chr1_2:48254313-48254332	None:intergenic	65.0%
	TGCGGGAGCTTCAGTGCACC+GGG	+	chr1_2:48254324-48254343	Msa0074080:intron	65.0%
	GTGGACCAGTGCGCCAATGG+TGG	+	chr1_2:48254443-48254462	Msa0074080:CDS	65.0%
	TGTGGACCCCAGGGCCCTCG+TGG	+	chr1_2:48253807-48253826	Msa0074080:CDS	75.0%
	TGTGGACCCCAGGGCCCTCG+TGG	+	chr1_2:48253807-48253826	Msa0074080:CDS	75.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	48253525	48254833	48253525	ID=Msa0074080;Name=Msa0074080
chr1_2	mRNA	48253525	48254833	48253525	ID=Msa0074080-mRNA-1;Parent=Msa0074080;Name=Msa0074080-mRNA-1;_AED=0.14;_eAED=0.14;_QI=63\|1\|1\|1\|1\|1\|2\|268\|144
chr1_2	exon	48253525	48253857	48253525	ID=Msa0074080-mRNA-1:exon:14652;Parent=Msa0074080-mRNA-1
chr1_2	exon	48254401	48254833	48254401	ID=Msa0074080-mRNA-1:exon:14653;Parent=Msa0074080-mRNA-1
chr1_2	five_prime_UTR	48253525	48253587	48253525	ID=Msa0074080-mRNA-1:five_prime_utr;Parent=Msa0074080-mRNA-1
chr1_2	CDS	48253588	48253857	48253588	ID=Msa0074080-mRNA-1:cds;Parent=Msa0074080-mRNA-1
chr1_2	CDS	48254401	48254565	48254401	ID=Msa0074080-mRNA-1:cds;Parent=Msa0074080-mRNA-1
chr1_2	three_prime_UTR	48254566	48254833	48254566	ID=Msa0074080-mRNA-1:three_prime_utr;Parent=Msa0074080-mRNA-1

Gene Sequence

>Msa0074080

ATGGAGAGCACACAGAGAACTTTGAGCTTGTTGGTTTTGTGTTTCCTTGTGGGAACGATGTTAGTGAATGGTCAGAGTGCAAACGGTGTAAGGTCAACGTACCACCTTTACAACCCTCAGAATATTAATTGGGATTACAACAGAGCCAGTGTATACTGTGCTACCTGGGATGCAAACCAGCCCTTGGAATGGCGTAAAAAGTATGGTTGGACTGCCTTTTGTGGACCCCAGGGCCCTCGTGGTAGAGAGTCTTGTGGCAAGTGCTTGAGGGTGACAAATACTGCAACTGGAGCTCAAGTAACAGTGAGAATAGTGGACCAGTGCGCCAATGGTGGATTAGACTTGGATGTGAATGTCTTCAATCAAATTGATACCAATGGACAGGGTTACCAGAAGGGTCACCTTACAGTTAACTATGTCTTTGTTAATTGTTAA

Protein sequence

>Msa0074080

MESTQRTLSLLVLCFLVGTMLVNGQSANGVRSTYHLYNPQNINWDYNRASVYCATWDANQPLEWRKKYGWTAFCGPQGPRGRESCGKCLRVTNTATGAQVTVRIVDQCANGGLDLDVNVFNQIDTNGQGYQKGHLTVNYVFVNC*