AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0528970

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0528970 MtrunA17_Chr1g0187241 92.456 623 17 1 1 623 1 593 0.0 1176
Msa0528970 MtrunA17_Chr1g0166711 77.472 617 105 4 1 616 1 584 0.0 956
Msa0528970 MtrunA17_Chr1g0166791 69.637 606 150 3 10 613 8 581 0.0 885
Msa0528970 MtrunA17_Chr1g0166741 66.613 617 164 5 1 615 3 579 0.0 831
Msa0528970 MtrunA17_Chr7g0261771 59.903 616 211 5 8 621 13 594 0.0 776
Msa0528970 MtrunA17_Chr7g0261881 58.199 622 223 5 4 620 5 594 0.0 775
Msa0528970 MtrunA17_Chr7g0261811 59.380 613 214 5 4 613 5 585 0.0 769
Msa0528970 MtrunA17_Chr1g0166771 65.571 578 158 4 40 615 5 543 0.0 766
Msa0528970 MtrunA17_Chr1g0166731 80.000 470 91 2 143 611 9 476 0.0 764
Msa0528970 MtrunA17_Chr7g0261791 56.250 624 236 5 1 619 4 595 0.0 733
Msa0528970 MtrunA17_Chr7g0261851 59.396 596 206 5 2 595 6 567 0.0 716
Msa0528970 MtrunA17_Chr7g0261661 61.845 477 175 4 144 615 1 475 0.0 629
Msa0528970 MtrunA17_Chr3g0114501 48.943 615 273 6 8 617 4 582 0.0 590
Msa0528970 MtrunA17_Chr7g0261751 54.545 528 170 5 8 497 13 508 0.0 588
Msa0528970 MtrunA17_Chr8g0375311 43.615 603 295 6 1 593 12 579 1.60e-180 523
Msa0528970 MtrunA17_Chr3g0104011 44.646 607 287 9 1 599 1 566 1.48e-176 513
Msa0528970 MtrunA17_Chr8g0375291 43.216 597 294 5 2 588 13 574 7.15e-176 511
Msa0528970 MtrunA17_Chr7g0261731 60.976 369 111 3 8 375 13 349 1.54e-169 487
Msa0528970 MtrunA17_Chr7g0241741 41.362 602 308 7 8 602 4 567 8.93e-168 490
Msa0528970 MtrunA17_Chr8g0375351 39.731 594 312 5 9 593 23 579 2.63e-165 484
Msa0528970 MtrunA17_Chr4g0005901 41.500 600 303 8 7 596 10 571 4.38e-163 479
Msa0528970 MtrunA17_Chr8g0375321 39.292 593 318 4 8 593 19 576 5.34e-162 476
Msa0528970 MtrunA17_Chr8g0375341 39.562 594 313 5 9 593 23 579 7.89e-162 476
Msa0528970 MtrunA17_Chr8g0375331 39.798 593 315 4 8 593 6 563 1.13e-159 469
Msa0528970 MtrunA17_Chr8g0375361 41.356 590 304 4 11 593 24 578 4.44e-156 461
Msa0528970 MtrunA17_Chr3g0112611 38.693 597 317 10 8 596 14 569 5.06e-145 433
Msa0528970 MtrunA17_Chr3g0112671 37.007 608 323 8 8 609 15 568 2.31e-141 423
Msa0528970 MtrunA17_Chr7g0240381 37.937 601 314 10 7 596 6 558 4.59e-141 422
Msa0528970 MtrunA17_Chr5g0422881 38.908 586 314 9 20 596 14 564 7.38e-137 412
Msa0528970 MtrunA17_Chr5g0399061 37.583 604 328 8 2 596 9 572 1.92e-136 410
Msa0528970 MtrunA17_Chr4g0008651 36.027 594 331 8 10 596 18 569 2.53e-135 408
Msa0528970 MtrunA17_Chr5g0400371 35.462 595 340 6 9 593 95 655 7.61e-134 407
Msa0528970 MtrunA17_Chr3g0077151 37.667 600 305 11 3 596 7 543 4.02e-132 398
Msa0528970 MtrunA17_Chr4g0014791 37.884 586 306 9 14 595 17 548 2.47e-131 397
Msa0528970 MtrunA17_Chr4g0014871 36.627 587 317 8 14 596 18 553 3.58e-131 396
Msa0528970 MtrunA17_Chr4g0054891 35.099 604 341 7 2 593 84 648 8.81e-131 399
Msa0528970 MtrunA17_Chr7g0217461 35.494 617 350 8 9 613 7 587 2.51e-130 395
Msa0528970 MtrunA17_Chr3g0142091 37.919 596 321 10 17 606 17 569 6.79e-130 394
Msa0528970 MtrunA17_Chr3g0142101 35.859 594 326 10 7 589 10 559 1.10e-129 393
Msa0528970 MtrunA17_Chr4g0056431 36.842 627 345 7 3 619 8 593 1.84e-129 393
Msa0528970 MtrunA17_Chr4g0014781 36.887 591 317 8 14 600 17 555 1.06e-128 390
Msa0528970 MtrunA17_Chr5g0399071 37.479 587 326 6 18 596 17 570 3.22e-127 387
Msa0528970 MtrunA17_Chr1g0213711 35.304 592 336 9 8 593 4 554 3.68e-127 387
Msa0528970 MtrunA17_Chr4g0014801 36.860 586 314 8 14 595 17 550 6.59e-126 382
Msa0528970 MtrunA17_Chr4g0014841 36.210 591 319 8 9 595 12 548 1.12e-125 382
Msa0528970 MtrunA17_Chr7g0214461 35.548 602 338 10 10 603 64 623 7.88e-125 382
Msa0528970 MtrunA17_Chr7g0218851 35.216 602 344 9 18 612 38 600 2.55e-124 380
Msa0528970 MtrunA17_Chr8g0353031 38.031 589 301 7 27 602 19 556 7.17e-124 378
Msa0528970 MtrunA17_Chr7g0255621 35.099 604 339 10 7 596 1 565 7.43e-122 374
Msa0528970 MtrunA17_Chr7g0255611 34.831 623 341 14 2 605 12 588 1.36e-121 373
Msa0528970 MtrunA17_Chr5g0415791 35.927 604 343 7 26 618 29 599 8.03e-121 371
Msa0528970 MtrunA17_Chr4g0063591 36.913 596 323 6 8 593 4 556 2.51e-119 366
Msa0528970 MtrunA17_Chr7g0255601 35.667 600 327 11 14 596 15 572 1.41e-118 365
Msa0528970 MtrunA17_Chr7g0214731 34.400 625 355 13 11 621 44 627 3.55e-117 363
Msa0528970 MtrunA17_Chr3g0133341 34.122 592 344 6 22 605 10 563 4.93e-116 357
Msa0528970 MtrunA17_Chr2g0284701 33.443 607 347 10 14 598 19 590 2.11e-113 352
Msa0528970 MtrunA17_Chr5g0439381 34.405 622 339 10 8 611 9 579 9.73e-113 350
Msa0528970 MtrunA17_Chr2g0276751 35.585 607 326 11 6 600 14 567 2.31e-109 341
Msa0528970 MtrunA17_Chr8g0362711 33.167 600 344 9 15 597 13 572 6.26e-106 332
Msa0528970 MtrunA17_Chr4g0011041 31.034 609 359 9 5 593 11 578 9.43e-106 331
Msa0528970 MtrunA17_Chr4g0011471 33.625 571 324 8 37 593 27 556 1.98e-105 330
Msa0528970 MtrunA17_Chr4g0014861 38.443 424 248 5 176 595 13 427 4.05e-101 314
Msa0528970 MtrunA17_Chr5g0415961 31.115 601 360 9 14 598 12 574 7.98e-101 318
Msa0528970 MtrunA17_Chr1g0193391 30.185 593 359 10 14 598 3 548 7.71e-98 311
Msa0528970 MtrunA17_Chr3g0082631 38.055 473 247 8 143 596 14 459 2.55e-97 306
Msa0528970 MtrunA17_Chr8g0379971 32.643 628 352 12 7 598 1 593 1.97e-96 308
Msa0528970 MtrunA17_Chr7g0271221 30.579 605 369 8 13 612 4 562 1.42e-95 305
Msa0528970 MtrunA17_Chr4g0060001 33.508 573 326 9 28 586 31 562 5.51e-95 304
Msa0528970 MtrunA17_Chr4g0059981 31.392 618 368 9 2 605 15 590 1.04e-94 303
Msa0528970 MtrunA17_Chr4g0059991 31.229 586 356 8 31 602 27 579 1.04e-93 300
Msa0528970 MtrunA17_Chr4g0059971 30.856 619 363 11 2 596 7 584 4.39e-93 298
Msa0528970 MtrunA17_Chr7g0240271 29.440 625 387 8 8 620 6 588 2.10e-92 296
Msa0528970 MtrunA17_Chr1g0157601 31.497 581 335 12 30 593 19 553 1.46e-90 291
Msa0528970 MtrunA17_Chr4g0069581 35.642 491 291 9 138 621 68 540 1.10e-89 289
Msa0528970 MtrunA17_Chr8g0362781 29.481 597 366 8 19 597 23 582 3.23e-89 288
Msa0528970 MtrunA17_Chr8g0390331 29.948 581 354 8 25 593 14 553 1.21e-88 286
Msa0528970 MtrunA17_Chr8g0362801 33.689 469 295 7 144 600 1 465 2.38e-87 280
Msa0528970 MtrunA17_Chr1g0147631 29.950 601 359 13 8 593 11 564 5.53e-85 277
Msa0528970 MtrunA17_Chr7g0240281 30.637 581 357 6 26 594 24 570 7.61e-83 271
Msa0528970 MtrunA17_Chr2g0331511 30.146 617 359 16 26 617 21 590 8.81e-82 270
Msa0528970 MtrunA17_Chr2g0331471 30.421 618 359 15 26 620 88 657 2.54e-81 270
Msa0528970 MtrunA17_Chr8g0379991 31.115 601 330 12 47 598 1 566 7.27e-81 266
Msa0528970 MtrunA17_Chr2g0331521 27.663 582 367 10 26 593 22 563 4.91e-80 264
Msa0528970 MtrunA17_Chr2g0331481 31.179 619 352 18 26 620 26 594 2.54e-79 263
Msa0528970 MtrunA17_Chr4g0003761 30.399 602 364 13 22 610 27 586 3.55e-79 262
Msa0528970 MtrunA17_Chr7g0235521 32.985 479 295 7 144 602 1 473 3.83e-79 258
Msa0528970 MtrunA17_Chr1g0157611 28.881 599 361 13 14 593 2 554 4.60e-79 261
Msa0528970 MtrunA17_Chr7g0261721 59.000 200 82 0 400 599 5 204 1.33e-78 249
Msa0528970 MtrunA17_Chr7g0240181 32.777 479 296 7 144 602 1 473 1.49e-77 254
Msa0528970 MtrunA17_Chr7g0240211 32.777 479 296 7 144 602 1 473 1.66e-77 254
Msa0528970 MtrunA17_Chr7g0240131 32.568 479 297 7 144 602 1 473 3.12e-77 253
Msa0528970 MtrunA17_Chr6g0451841 33.410 434 249 11 190 602 127 541 2.29e-76 253
Msa0528970 MtrunA17_Chr1g0157621 31.239 557 324 14 47 587 1 514 4.67e-76 253
Msa0528970 MtrunA17_Chr7g0240151 31.942 479 282 8 144 602 1 455 2.24e-72 240
Msa0528970 MtrunA17_Chr2g0331461 29.479 614 370 14 26 621 26 594 1.88e-71 242
Msa0528970 MtrunA17_Chr5g0415841 31.064 470 302 8 144 599 1 462 8.71e-70 233
Msa0528970 MtrunA17_Chr2g0326211 27.087 587 352 11 27 596 20 547 1.48e-69 235
Msa0528970 MtrunA17_Chr3g0142111 36.280 328 173 4 14 340 34 326 1.50e-67 223
Msa0528970 MtrunA17_Chr2g0325961 27.197 603 363 11 14 596 2 548 1.24e-65 224
Msa0528970 MtrunA17_Chr2g0325951 27.425 598 367 9 14 596 2 547 1.65e-65 224
Msa0528970 MtrunA17_Chr3g0112631 37.584 298 171 6 333 622 3 293 3.04e-65 216
Msa0528970 MtrunA17_Chr1g0177591 27.833 600 357 16 8 593 27 564 1.09e-64 223
Msa0528970 MtrunA17_Chr1g0166721 77.686 121 24 2 1 119 1 120 1.08e-59 196
Msa0528970 MtrunA17_Chr7g0234381 31.798 456 269 8 143 598 3 416 1.69e-58 202
Msa0528970 MtrunA17_Chr7g0234151 32.237 456 267 8 143 598 3 416 9.10e-58 200
Msa0528970 MtrunA17_Chr7g0261831 59.615 156 59 3 286 439 1 154 3.50e-57 192
Msa0528970 MtrunA17_Chr7g0234181 31.938 454 265 8 146 598 1 411 2.69e-56 196
Msa0528970 MtrunA17_Chr1g0177611 28.899 436 281 8 170 593 17 435 5.93e-56 196
Msa0528970 MtrunA17_Chr4g0060071 33.333 297 195 2 302 597 5 299 2.22e-54 187
Msa0528970 MtrunA17_Chr1g0177631 29.885 435 272 10 173 593 20 435 3.44e-54 191
Msa0528970 MtrunA17_Chr3g0142121 36.923 260 151 5 334 589 11 261 6.82e-51 177
Msa0528970 MtrunA17_Chr7g0261671 68.868 106 33 0 8 113 14 119 3.82e-50 169
Msa0528970 MtrunA17_Chr3g0112651 39.205 176 102 1 143 318 21 191 5.22e-42 151
Msa0528970 MtrunA17_Chr1g0147591 32.995 197 106 5 187 368 10 195 7.16e-27 108
Msa0528970 MtrunA17_Chr4g0014851 47.000 100 53 0 14 113 18 117 2.07e-25 102
Msa0528970 MtrunA17_Chr4g0060061 40.496 121 72 0 169 289 8 128 2.04e-24 99.0
Msa0528970 MtrunA17_Chr3g0112661 43.810 105 59 0 11 115 16 120 1.37e-22 94.0
Msa0528970 MtrunA17_Chr7g0261821 55.224 67 30 0 534 600 1 67 6.24e-22 89.7
Msa0528970 MtrunA17_Chr4g0060051 39.450 109 62 1 1 109 1 105 3.26e-18 81.3
Msa0528970 MtrunA17_Chr2g0326221 26.577 222 133 4 376 596 31 223 1.10e-17 82.4
Msa0528970 MtrunA17_Chr8g0362791 41.176 85 50 0 31 115 41 125 8.89e-16 74.7
Msa0528970 MtrunA17_Chr3g0082621 45.833 72 39 0 42 113 2 73 1.71e-14 69.3
Msa0528970 MtrunA17_Chr7g0261841 55.556 54 23 1 144 196 1 54 1.82e-13 66.2
Msa0528970 MtrunA17_Chr8g0382601 38.356 73 44 1 239 310 1 73 5.17e-12 62.4
Msa0528970 MtrunA17_Chr1g0166761 69.231 39 10 1 1 39 3 39 3.00e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0528970 AT5G46050.1 67.213 610 165 5 7 614 6 582 0.0 823
Msa0528970 AT5G46040.1 64.123 616 183 6 7 620 6 585 0.0 777
Msa0528970 AT5G46050.2 70.190 473 136 4 144 614 1 470 0.0 675
Msa0528970 AT2G40460.1 50.333 600 253 8 1 598 1 557 0.0 598
Msa0528970 AT2G02040.1 43.095 601 297 7 1 591 12 577 5.16e-178 517
Msa0528970 AT3G54140.1 43.328 607 295 8 1 599 1 566 6.00e-176 511
Msa0528970 AT3G54140.2 43.328 607 295 8 1 599 1 566 6.00e-176 511
Msa0528970 AT1G62200.1 40.527 607 304 6 1 590 15 581 2.43e-167 490
Msa0528970 AT5G01180.2 42.429 601 292 7 8 596 5 563 2.91e-167 489
Msa0528970 AT5G01180.3 42.429 601 292 7 8 596 5 563 2.91e-167 489
Msa0528970 AT5G01180.1 42.429 601 292 7 8 596 5 563 2.91e-167 489
Msa0528970 AT1G62200.3 38.959 634 305 7 1 590 29 624 2.99e-162 479
Msa0528970 AT1G62200.2 38.959 634 305 7 1 590 15 610 3.33e-162 478
Msa0528970 AT2G02020.1 39.460 593 284 8 3 588 14 538 1.03e-152 451
Msa0528970 AT3G54450.1 39.698 597 294 10 26 609 11 554 1.92e-147 438
Msa0528970 AT3G53960.1 38.462 611 323 8 8 608 17 584 2.85e-145 434
Msa0528970 AT2G37900.1 35.343 597 332 6 8 597 18 567 4.88e-135 407
Msa0528970 AT2G02020.2 36.931 593 278 9 3 588 14 517 9.19e-135 404
Msa0528970 AT1G32450.1 36.242 596 337 6 9 593 18 581 5.55e-134 405
Msa0528970 AT1G12110.1 38.602 601 319 9 18 604 17 581 5.80e-131 397
Msa0528970 AT1G22540.1 37.815 595 307 11 16 604 18 555 1.81e-130 395
Msa0528970 AT1G72140.1 36.393 610 309 11 2 597 9 553 1.71e-126 384
Msa0528970 AT1G68570.1 36.435 634 353 10 1 623 1 595 5.85e-126 384
Msa0528970 AT2G26690.1 37.500 608 323 7 8 604 4 565 1.89e-124 380
Msa0528970 AT1G22570.1 36.982 603 325 9 2 596 5 560 5.88e-124 378
Msa0528970 AT1G68570.2 37.099 593 328 7 42 623 7 565 6.25e-124 378
Msa0528970 AT4G21680.1 34.158 606 349 7 9 600 9 578 5.03e-118 363
Msa0528970 AT5G13400.1 35.846 597 339 9 17 601 52 616 2.01e-117 363
Msa0528970 AT2G37900.2 35.768 534 289 6 71 597 2 488 1.84e-116 357
Msa0528970 AT2G26690.2 37.631 574 301 7 42 604 5 532 1.64e-115 355
Msa0528970 AT1G22570.2 37.123 563 300 8 42 596 7 523 3.30e-114 352
Msa0528970 AT1G59740.1 35.833 600 336 8 2 591 12 572 6.79e-114 353
Msa0528970 AT1G72130.1 34.483 580 304 11 24 595 21 532 1.38e-113 350
Msa0528970 AT5G19640.1 35.163 583 319 12 29 603 60 591 2.31e-113 352
Msa0528970 AT1G72125.1 36.789 598 320 10 7 596 9 556 7.42e-113 349
Msa0528970 AT2G26690.3 37.522 565 296 7 51 604 2 520 1.41e-112 348
Msa0528970 AT1G69870.1 34.991 583 332 7 25 596 48 594 3.82e-112 349
Msa0528970 AT3G21670.1 36.027 594 317 6 18 599 19 561 8.56e-112 347
Msa0528970 AT1G72120.1 36.913 596 318 10 7 596 9 552 9.40e-112 346
Msa0528970 AT1G69850.1 32.258 620 359 9 7 602 3 585 9.69e-107 334
Msa0528970 AT1G33440.1 34.776 624 338 13 9 612 19 593 6.99e-106 332
Msa0528970 AT1G27040.1 32.302 582 360 3 14 595 13 560 7.76e-105 329
Msa0528970 AT1G27040.2 32.302 582 360 3 14 595 9 556 8.68e-105 328
Msa0528970 AT1G27040.3 31.907 561 348 3 35 595 2 528 3.08e-98 310
Msa0528970 AT3G16180.1 31.186 590 348 10 22 593 16 565 4.89e-97 309
Msa0528970 AT1G22550.1 38.785 428 233 9 179 596 151 559 1.57e-96 307
Msa0528970 AT1G22550.1 46.226 106 56 1 2 107 5 109 1.12e-21 99.8
Msa0528970 AT1G52190.1 30.835 587 348 11 26 593 19 566 1.11e-94 303
Msa0528970 AT1G18880.1 32.040 593 346 11 31 605 22 575 9.17e-94 300
Msa0528970 AT1G27080.1 32.590 583 337 9 26 597 12 549 8.64e-93 298
Msa0528970 AT1G72130.2 35.550 436 246 8 168 595 6 414 7.80e-89 282
Msa0528970 AT1G72130.3 35.550 436 246 8 168 595 6 414 7.80e-89 282
Msa0528970 AT5G62680.1 31.250 624 369 12 4 609 24 605 2.55e-88 287
Msa0528970 AT5G14940.1 30.167 600 343 13 26 604 5 549 3.84e-88 285
Msa0528970 AT5G28470.2 30.546 586 348 11 24 596 13 552 4.79e-87 282
Msa0528970 AT5G62730.1 29.766 598 355 8 14 598 42 587 9.55e-86 280
Msa0528970 AT3G25260.1 32.313 588 316 13 5 587 2 512 1.40e-84 274
Msa0528970 AT3G47960.1 31.911 586 340 12 31 597 64 609 3.65e-84 276
Msa0528970 AT3G45650.1 29.933 598 370 9 12 608 6 555 4.15e-84 274
Msa0528970 AT5G28470.1 30.375 586 347 12 24 596 13 550 4.58e-84 274
Msa0528970 AT1G27080.2 32.790 552 315 10 57 597 1 507 5.41e-83 271
Msa0528970 AT3G45700.1 30.809 581 338 14 27 601 15 537 4.68e-81 266
Msa0528970 AT3G45710.1 30.201 596 347 14 28 611 21 559 2.00e-80 265
Msa0528970 AT5G62730.2 29.585 578 342 8 34 598 3 528 3.55e-80 263
Msa0528970 AT3G45650.2 28.686 624 370 10 12 608 6 581 1.48e-78 260
Msa0528970 AT3G45720.1 30.612 588 335 15 28 602 19 546 2.95e-78 259
Msa0528970 AT3G45680.1 30.118 591 349 15 14 596 8 542 8.76e-78 258
Msa0528970 AT3G01350.1 29.043 606 349 13 25 601 3 556 1.07e-77 258
Msa0528970 AT1G69860.1 30.120 581 349 10 26 596 16 549 2.15e-76 254
Msa0528970 AT3G25280.1 29.863 586 344 10 9 593 2 521 1.12e-75 251
Msa0528970 AT3G45660.1 28.722 571 356 9 28 596 21 542 7.32e-75 250
Msa0528970 AT3G45660.3 28.722 571 356 9 28 596 21 542 7.32e-75 250
Msa0528970 AT3G45660.2 28.722 571 356 9 28 596 42 563 1.16e-74 250
Msa0528970 AT3G45690.1 28.522 575 314 15 27 596 17 499 7.87e-67 227
Msa0528970 AT5G11570.1 26.701 588 310 14 14 593 2 476 3.85e-59 206
Msa0528970 AT2G38100.2 26.846 447 288 10 176 609 76 496 2.30e-38 149
Msa0528970 AT2G38100.1 26.846 447 288 10 176 609 92 512 4.96e-38 148
Msa0528970 AT2G38100.3 26.846 447 288 10 176 609 98 518 5.31e-38 148

Find 141 sgRNAs with CRISPR-Local

Find 399 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAATACTCTTCATGCTTTC+TGG 0.066053 4_1:-1980527 None:intergenic
GCTTCCTCAGTTTATACTTA+TGG 0.141612 4_1:+1980448 Msa0528970:CDS
GGTAATCCCTCTTGGATTCT+TGG 0.231736 4_1:-1980279 None:intergenic
AGGCAATTTGTGTCTATAAA+AGG 0.238778 4_1:-1979224 None:intergenic
TTTGAAAGAATGGCATATTA+TGG 0.240890 4_1:+1975803 Msa0528970:CDS
TAGTTGCCTCTTTGAGAAAA+TGG 0.247765 4_1:+1979281 Msa0528970:CDS
CTTCCTCAGTTTATACTTAT+GGG 0.256695 4_1:+1980449 Msa0528970:CDS
CATCCGTGACAGAAAATTAT+AGG 0.268828 4_1:+1980357 Msa0528970:CDS
TGTTCTCCACACAATTATTA+TGG 0.272669 4_1:+1980328 Msa0528970:CDS
GTTAAGGATGATTCCAATCT+TGG 0.276563 4_1:+1980064 Msa0528970:CDS
CTAGAACAGTATTAGCAAAA+AGG 0.279901 4_1:-1979108 None:intergenic
TTACAAGGCTTTATGTATAT+AGG 0.285350 4_1:+1980744 Msa0528970:CDS
TGGATGTTTAGCATCTTCTT+TGG 0.287426 4_1:+1979082 Msa0528970:CDS
AATATCAATTATGATATTCT+TGG 0.288500 4_1:+1979192 Msa0528970:CDS
ATTTCTTACCGAGAGATAAA+TGG 0.296351 4_1:-1975996 None:intergenic
ATGCAATAACTTATTCTATA+AGG 0.305469 4_1:-1980838 None:intergenic
ATTTGGATGACACCTATATT+AGG 0.308097 4_1:+1975917 Msa0528970:CDS
TTCTCGGATTAGGCGTGTTC+TGG 0.309363 4_1:+1978725 Msa0528970:CDS
AGCTTTCCAACCACCAGTTT+TGG 0.319121 4_1:-1974483 None:intergenic
TACAAGGCTTTATGTATATA+GGG 0.319432 4_1:+1980745 Msa0528970:CDS
TAGGGTGAAAATCATCAAAT+TGG 0.324030 4_1:-1979024 None:intergenic
AGAACTATATGAACTTGATA+TGG 0.329187 4_1:+1979330 Msa0528970:CDS
ACTAAGGAACATGGTCATAA+AGG 0.332144 4_1:+1980626 Msa0528970:CDS
CCAATTGGGTTGGGACCATT+TGG 0.334713 4_1:+1975900 Msa0528970:CDS
GGATGTTTAGCATCTTCTTT+GGG 0.346262 4_1:+1979083 Msa0528970:CDS
TGTATATAGGGCTGAAGTTT+CGG 0.360555 4_1:+1980757 Msa0528970:CDS
ATGAATAGAATGAGCTCAAA+AGG 0.367880 4_1:-1981033 None:intergenic
GCAACATAAGCACCTAATAT+AGG 0.383360 4_1:-1975929 None:intergenic
AAAGTCAATCCTGCTATAAC+TGG 0.384241 4_1:+1978660 Msa0528970:CDS
ATGATCTCACAGACACTTCT+CGG 0.387748 4_1:+1978709 Msa0528970:CDS
TCTATGACCGTTTCTTTGTA+AGG 0.389056 4_1:+1980240 Msa0528970:CDS
CAAGTAACAATGTCACCAAT+TGG 0.391039 4_1:+1975885 Msa0528970:CDS
TCATATTCTTCAACTACATT+AGG 0.391852 4_1:+1980554 Msa0528970:CDS
CTTCTTCAAAGAATGGGAAT+TGG 0.397785 4_1:+1980302 Msa0528970:CDS
CAAAAGTTGAAGGATAACTA+TGG 0.405149 4_1:+1974385 Msa0528970:exon
ATAAGTTATTGCATCTATAT+AGG 0.409064 4_1:+1980847 Msa0528970:exon
CCTGTTCTTAGATCCAAAAC+TGG 0.409508 4_1:+1974470 Msa0528970:CDS
ACTTGAGCCATCATTGTACT+TGG 0.409568 4_1:-1980101 None:intergenic
TATAGTTCTTTAGTATCATC+AGG 0.412300 4_1:-1979316 None:intergenic
CAATTCCCATTCTTTGAAGA+AGG 0.415294 4_1:-1980301 None:intergenic
ACAAATGTAGCAACCAAGAT+TGG 0.425089 4_1:-1980077 None:intergenic
GCACCAATGGTTGATATGTT+GGG 0.427910 4_1:-1978998 None:intergenic
AGCACCAATGGTTGATATGT+TGG 0.430741 4_1:-1978999 None:intergenic
TGAAGAAGGGTAATCCCTCT+TGG 0.431813 4_1:-1980287 None:intergenic
GAACATGGTTTAGTTGAAAG+TGG 0.432350 4_1:+1980395 Msa0528970:CDS
CTAAGGAACATGGTCATAAA+GGG 0.434102 4_1:+1980627 Msa0528970:CDS
GATTACCCTTCTTCAAAGAA+TGG 0.435756 4_1:+1980295 Msa0528970:CDS
TTGAAGGATAACTATGGAAG+AGG 0.437888 4_1:+1974391 Msa0528970:exon
GCACTTTACACTCTAGCAAT+AGG 0.438872 4_1:+1978959 Msa0528970:CDS
ATGGCATTGTGGTGGCTTCA+AGG 0.445113 4_1:-1978876 None:intergenic
TTCTCTTCTTTCCTATCCAA+GGG 0.446411 4_1:+1974267 Msa0528970:five_prime_UTR
ATGGAAGAGTATGCTAAGAA+AGG 0.449915 4_1:+1979349 Msa0528970:CDS
ATTACCCTTCTTCAAAGAAT+GGG 0.450564 4_1:+1980296 Msa0528970:CDS
GAGAGAGAGATAAATATTTG+TGG 0.452040 4_1:+1974351 Msa0528970:five_prime_UTR
TGCATCCTCCATTTATCTCT+CGG 0.456345 4_1:+1975988 Msa0528970:CDS
AAAGCTTGTTCCTTTGTTGT+TGG 0.460711 4_1:+1974500 Msa0528970:CDS
TACTTGCAGTCACTGTTCCT+TGG 0.461462 4_1:-1975868 None:intergenic
CCAAATGGTCCCAACCCAAT+TGG 0.463312 4_1:-1975900 None:intergenic
AAGAGACAAAACAAATGTTA+AGG 0.463617 4_1:+1980048 Msa0528970:CDS
ACAAATGCAGCTAAACTTGC+TGG 0.466855 4_1:-1980188 None:intergenic
GACTGTATCGCGTATAACTA+AGG 0.467198 4_1:+1980610 Msa0528970:CDS
TGGAAGAGTATGCTAAGAAA+GGG 0.468058 4_1:+1979350 Msa0528970:CDS
GATAATGTAGGGTGGACTCT+TGG 0.468721 4_1:+1979142 Msa0528970:CDS
TACACTCTAGCAATAGGAAC+AGG 0.472265 4_1:+1978965 Msa0528970:CDS
TTTCTCTTCTTTCCTATCCA+AGG 0.473037 4_1:+1974266 Msa0528970:five_prime_UTR
GGCAATTTGTGTCTATAAAA+GGG 0.473662 4_1:-1979223 None:intergenic
CCAGAAAGCATGAAGAGTAT+TGG 0.475085 4_1:+1980527 Msa0528970:CDS
GACAAGGCAAGTGTCAAAAC+AGG 0.476830 4_1:+1979984 Msa0528970:CDS
ATCAAATTGGTCAGCACCAA+TGG 0.477753 4_1:-1979011 None:intergenic
ATTTGTTCCAAGTACAATGA+TGG 0.478629 4_1:+1980094 Msa0528970:CDS
TACGCGATACAGTCGACAAA+AGG 0.483367 4_1:-1980601 None:intergenic
TCTTCAACTACATTAGGCAT+TGG 0.484306 4_1:+1980560 Msa0528970:CDS
TCACAGACACTTCTCGGATT+AGG 0.484393 4_1:+1978715 Msa0528970:CDS
TCTTCTTCGCGATTGTTACA+AGG 0.486697 4_1:+1980729 Msa0528970:CDS
GAGTCCACCCTACATTATCT+TGG 0.488116 4_1:-1979138 None:intergenic
GTATGAAGTATTTGAAAGAA+TGG 0.490979 4_1:+1975793 Msa0528970:CDS
GTTGAGTAAACAAAAGTTGA+AGG 0.493147 4_1:+1974375 Msa0528970:five_prime_UTR
GAAGCTTCTTTGTGAGGAAG+AGG 0.495772 4_1:-1975844 None:intergenic
AAGGAGGAGTACACAGAAGA+TGG 0.498352 4_1:+1974425 Msa0528970:CDS
TATAGACACAAATTGCCTGC+AGG 0.499408 4_1:+1979229 Msa0528970:CDS
AGAGGGCAGAGTAGTGAAGG+AGG 0.501220 4_1:+1974409 Msa0528970:CDS
TAATATAGGTGTCATCCAAA+TGG 0.502308 4_1:-1975915 None:intergenic
GTTTATATCCAAGATAATGT+AGG 0.508581 4_1:+1979130 Msa0528970:CDS
GGATATGCTTTACCAACTCT+AGG 0.512162 4_1:+1979163 Msa0528970:CDS
AAGTAACAATGTCACCAATT+GGG 0.513695 4_1:+1975886 Msa0528970:CDS
TCAATTATGATATTCTTGGC+AGG 0.514039 4_1:+1979196 Msa0528970:CDS
TACTTTCACTAGAATGGCTA+GGG 0.514636 4_1:+1979255 Msa0528970:CDS
TTAGATCCAAAACTGGTGGT+TGG 0.517084 4_1:+1974477 Msa0528970:CDS
GATATTGCTAATCCTAGAGT+TGG 0.517407 4_1:-1979175 None:intergenic
ATAGTTAAACCAGTTATAGC+AGG 0.517679 4_1:-1978669 None:intergenic
CTTGGTGAAGCTTCTTTGTG+AGG 0.518141 4_1:-1975850 None:intergenic
AGGGAGTACTTTCACTAGAA+TGG 0.522005 4_1:+1979249 Msa0528970:CDS
TGCTCTTAGGTCCCTTGGAT+AGG 0.522347 4_1:-1974278 None:intergenic
GTACTTTCACTAGAATGGCT+AGG 0.525257 4_1:+1979254 Msa0528970:CDS
AACAATGTCACCAATTGGGT+TGG 0.525729 4_1:+1975890 Msa0528970:CDS
AATTCCCATTCTTTGAAGAA+GGG 0.526526 4_1:-1980300 None:intergenic
ACAATGTCACCAATTGGGTT+GGG 0.534361 4_1:+1975891 Msa0528970:CDS
CTTAGAGTGGCAAAAGAACA+TGG 0.538649 4_1:+1980380 Msa0528970:CDS
GCATGATCCTTACAAAGAAA+CGG 0.539893 4_1:-1980247 None:intergenic
TATGTTGCTGATGCTCACCT+TGG 0.550523 4_1:+1975944 Msa0528970:CDS
TTTATATCCAAGATAATGTA+GGG 0.553143 4_1:+1979131 Msa0528970:CDS
CACAGCTAATTGTAATGTAG+AGG 0.555926 4_1:-1978927 None:intergenic
GGAAGAGGGCAGAGTAGTGA+AGG 0.558901 4_1:+1974406 Msa0528970:CDS
CTTATTCTATAAGGTTCGCA+TGG 0.561389 4_1:-1980829 None:intergenic
ATAGACACAAATTGCCTGCA+GGG 0.564786 4_1:+1979230 Msa0528970:CDS
CTAGTGAAAGTACTCCCTGC+AGG 0.565881 4_1:-1979244 None:intergenic
AAATATATATACCTCAATGT+TGG 0.566219 4_1:-1979400 None:intergenic
CATTGTGGTGGCTTCAAGGT+AGG 0.568165 4_1:-1978872 None:intergenic
TTGATTCTACTCCAACATTG+AGG 0.568265 4_1:+1979389 Msa0528970:CDS
AAACCCAACATATCAACCAT+TGG 0.569968 4_1:+1978995 Msa0528970:CDS
ACAACACTTGACAGACACAT+TGG 0.573195 4_1:+1980149 Msa0528970:CDS
TGAATAGAATGAGCTCAAAA+GGG 0.577618 4_1:-1981032 None:intergenic
AAACAGGCTCAACTAGTCCA+TGG 0.584333 4_1:+1980000 Msa0528970:CDS
AGCAAAATGAAAATACTCAA+AGG 0.587653 4_1:-1980428 None:intergenic
GATTATCAATAGAATGCATG+TGG 0.589368 4_1:-1974243 None:intergenic
CATGCTTGCCAATGAACTGA+AGG 0.590151 4_1:+1980790 Msa0528970:CDS
GATGGAACTGTGAATCTCAA+AGG 0.591833 4_1:+1974443 Msa0528970:CDS
ATTATTTAGGTTCCTAGACA+AGG 0.594422 4_1:+1979968 Msa0528970:intron
ATTATCAATAGAATGCATGT+GGG 0.601491 4_1:-1974242 None:intergenic
TGAAGGATAACTATGGAAGA+GGG 0.606507 4_1:+1974392 Msa0528970:exon
GTAACTGTGCATAACATCCA+TGG 0.611443 4_1:-1980017 None:intergenic
AGGAACATGGTCATAAAGGG+TGG 0.616187 4_1:+1980630 Msa0528970:CDS
AATGCAGCTAAACTTGCTGG+TGG 0.617774 4_1:-1980185 None:intergenic
TCTAATTCATGGCATTGTGG+TGG 0.621164 4_1:-1978884 None:intergenic
ACTCTAGCAATAGGAACAGG+TGG 0.624774 4_1:+1978968 Msa0528970:CDS
AGAAAATTATAGGCTTAGAG+TGG 0.632729 4_1:+1980367 Msa0528970:CDS
ACATCTAATTCATGGCATTG+TGG 0.635027 4_1:-1978887 None:intergenic
CAACTACCATAATAATTGTG+TGG 0.639450 4_1:-1980334 None:intergenic
AATACCCTCTTTGTAAAACA+AGG 0.642074 4_1:+1980125 Msa0528970:CDS
TCTTACCGAGAGATAAATGG+AGG 0.642713 4_1:-1975993 None:intergenic
GTTCTTAGATCCAAAACTGG+TGG 0.657227 4_1:+1974473 Msa0528970:CDS
CATGGTTTAGTTGAAAGTGG+AGG 0.662978 4_1:+1980398 Msa0528970:CDS
GAGCACTACACAAACAAGCA+AGG 0.664656 4_1:-1980219 None:intergenic
TGAACTGAAGGAAAAGAAAG+CGG 0.669979 4_1:+1980802 Msa0528970:CDS
CTCACAAAGAAGCTTCACCA+AGG 0.674743 4_1:+1975851 Msa0528970:CDS
TCGCGTATAACTAAGGAACA+TGG 0.677015 4_1:+1980617 Msa0528970:CDS
GATTAACCAAGAATCCAAGA+GGG 0.678167 4_1:+1980273 Msa0528970:CDS
TTATCAATAGAATGCATGTG+GGG 0.684070 4_1:-1974241 None:intergenic
AGATTAACCAAGAATCCAAG+AGG 0.693948 4_1:+1980272 Msa0528970:CDS
GTTCCCATAAGTATAAACTG+AGG 0.698344 4_1:-1980452 None:intergenic
ATATCCAAGATAATGTAGGG+TGG 0.707851 4_1:+1979134 Msa0528970:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTATTTTTAAAATTTTAA+AGG + chr4_1:1977196-1977215 Msa0528970:intron 0.0%
!!! AAATTTTTTTATATTCTTCA+TGG + chr4_1:1976522-1976541 Msa0528970:intron 10.0%
!!! TTTTTTCTTTATTTTATGAA+AGG + chr4_1:1976990-1977009 Msa0528970:intron 10.0%
!! GTAATAAAAAATAATTAAGT+TGG + chr4_1:1977519-1977538 Msa0528970:intron 10.0%
!! TTATTATTAAATACAAAAGA+GGG - chr4_1:1978045-1978064 None:intergenic 10.0%
!! TTTATTATTAAATACAAAAG+AGG - chr4_1:1978046-1978065 None:intergenic 10.0%
!!! TAATTTTCTCAAATTATTTT+TGG + chr4_1:1979544-1979563 Msa0528970:intron 10.0%
!!! TTTCATTATAATTTTTTAAG+GGG - chr4_1:1979858-1979877 None:intergenic 10.0%
!!! CTTTCATTATAATTTTTTAA+GGG - chr4_1:1979859-1979878 None:intergenic 10.0%
!!! ACTTTCATTATAATTTTTTA+AGG - chr4_1:1979860-1979879 None:intergenic 10.0%
!! CGTATATTAATTTATTATTT+AGG + chr4_1:1979955-1979974 Msa0528970:intron 10.0%
!!! TGAGAAAACTTATTTTTTAA+GGG + chr4_1:1974856-1974875 Msa0528970:intron 15.0%
!! AAAACAAATTGATCATAAAT+TGG + chr4_1:1975080-1975099 Msa0528970:intron 15.0%
!! TTTCTACATTTATAAATTGA+AGG - chr4_1:1975725-1975744 None:intergenic 15.0%
!! GATTGTATGTTAAATTAAAA+GGG - chr4_1:1976090-1976109 None:intergenic 15.0%
!! TGATTGTATGTTAAATTAAA+AGG - chr4_1:1976091-1976110 None:intergenic 15.0%
!!! CAATAATTATAATGAGTTTT+TGG - chr4_1:1976118-1976137 None:intergenic 15.0%
!! AAATAATTCATAATTGCAAA+TGG - chr4_1:1976574-1976593 None:intergenic 15.0%
!!! ATGAATTATTTTGATGAAAA+TGG + chr4_1:1976583-1976602 Msa0528970:intron 15.0%
!!! TTTTTATAAAAAGAATCAGA+GGG - chr4_1:1977358-1977377 None:intergenic 15.0%
!!! TTTTTTATAAAAAGAATCAG+AGG - chr4_1:1977359-1977378 None:intergenic 15.0%
!! CATCAAATACATTTAAAAAT+TGG - chr4_1:1977425-1977444 None:intergenic 15.0%
!!! GTGTTTTGTTTATTATAAAA+AGG + chr4_1:1977547-1977566 Msa0528970:intron 15.0%
!! TTGTTTATTATAAAAAGGAT+CGG + chr4_1:1977552-1977571 Msa0528970:intron 15.0%
!! TATAAAGAAAAATACATCAA+AGG + chr4_1:1978228-1978247 Msa0528970:intron 15.0%
!!! AAAAGATTGATAATACTAAT+AGG + chr4_1:1978604-1978623 Msa0528970:intron 15.0%
!!! AAAGATTGATAATACTAATA+GGG + chr4_1:1978605-1978624 Msa0528970:intron 15.0%
!! CATTAATTATATTATTGTTC+AGG + chr4_1:1978635-1978654 Msa0528970:intron 15.0%
!!! ATAAACTTTCATTTTTCAAT+TGG + chr4_1:1979059-1979078 Msa0528970:CDS 15.0%
!! AATATCAATTATGATATTCT+TGG + chr4_1:1979192-1979211 Msa0528970:CDS 15.0%
!! ATTCAAAAACAATAACAATA+TGG - chr4_1:1980937-1980956 None:intergenic 15.0%
!!! TTGTAAAATATTTTGCTCTT+AGG - chr4_1:1974294-1974313 None:intergenic 20.0%
!! TAAATCCTAACAAAAAGATA+TGG - chr4_1:1974534-1974553 None:intergenic 20.0%
!! TAGCTAATAATAACAATTCA+TGG - chr4_1:1974581-1974600 None:intergenic 20.0%
!!! TATAGAACTTTAGAGTAAAA+AGG + chr4_1:1974657-1974676 Msa0528970:intron 20.0%
!!! ATAGAACTTTAGAGTAAAAA+GGG + chr4_1:1974658-1974677 Msa0528970:intron 20.0%
!! TTATTCTGTAAAAGATTGAA+GGG + chr4_1:1974681-1974700 Msa0528970:intron 20.0%
!!! GTGAGAAAACTTATTTTTTA+AGG + chr4_1:1974855-1974874 Msa0528970:intron 20.0%
!!! TATAGTTGTAGATAACTTTT+TGG + chr4_1:1974887-1974906 Msa0528970:intron 20.0%
!!! AAGAAGAAAAGTATTATAGA+AGG + chr4_1:1974925-1974944 Msa0528970:intron 20.0%
!! AACACATATCAAAACAAAAA+TGG + chr4_1:1975352-1975371 Msa0528970:intron 20.0%
!! TCTTATAAGAAAATTGTGAT+TGG - chr4_1:1975659-1975678 None:intergenic 20.0%
!! TCTGAGTATAATAAATCAAA+TGG + chr4_1:1976403-1976422 Msa0528970:intron 20.0%
!! TTAATTGCACGTAATATATA+TGG - chr4_1:1976634-1976653 None:intergenic 20.0%
!!! ATAAGAGATCTTTTAAATTG+TGG - chr4_1:1976666-1976685 None:intergenic 20.0%
!!! AAAAGTGTATTATTAGTAAC+CGG - chr4_1:1976974-1976993 None:intergenic 20.0%
!! ATGCTCAATTAATGTATTAT+TGG - chr4_1:1977017-1977036 None:intergenic 20.0%
!! TTGAATGATCTCTATATATT+TGG + chr4_1:1977131-1977150 Msa0528970:intron 20.0%
!! TACCAACTGAAATATATTTA+CGG - chr4_1:1977230-1977249 None:intergenic 20.0%
!! ATATTCTCTCACAATAAATA+AGG - chr4_1:1977465-1977484 None:intergenic 20.0%
!!! TTTTTTTCATCTTTTCTACA+TGG + chr4_1:1977817-1977836 Msa0528970:intron 20.0%
!!! AATGATTTTTGTCTTCTTTT+CGG + chr4_1:1977944-1977963 Msa0528970:intron 20.0%
!!! TTTTTCAAAGTATTAAGAAC+TGG + chr4_1:1978187-1978206 Msa0528970:intron 20.0%
!! TAATAATTCAGTGTAATGAT+AGG - chr4_1:1978782-1978801 None:intergenic 20.0%
!!! ATTTTGTTACATCTAATTCA+TGG - chr4_1:1978898-1978917 None:intergenic 20.0%
!!! GTTTATGTGATTTTTCTTTA+GGG - chr4_1:1979045-1979064 None:intergenic 20.0%
!!! AGTTTATGTGATTTTTCTTT+AGG - chr4_1:1979046-1979065 None:intergenic 20.0%
!! TTTATATCCAAGATAATGTA+GGG + chr4_1:1979131-1979150 Msa0528970:CDS 20.0%
!! AAATATATATACCTCAATGT+TGG - chr4_1:1979403-1979422 None:intergenic 20.0%
!! TTGAATATAATAACATGTGT+CGG - chr4_1:1979519-1979538 None:intergenic 20.0%
!! ATGCAATAACTTATTCTATA+AGG - chr4_1:1980841-1980860 None:intergenic 20.0%
!! ATAAGTTATTGCATCTATAT+AGG + chr4_1:1980847-1980866 Msa0528970:exon 20.0%
!!! ATTTTTAGAATTCACATAGT+AGG + chr4_1:1980955-1980974 Msa0528970:three_prime_UTR 20.0%
! ATTATCAATAGAATGCATGT+GGG - chr4_1:1974245-1974264 None:intergenic 25.0%
!!! AATAGTATTTTGACAAAGAG+AGG + chr4_1:1974312-1974331 Msa0528970:five_prime_UTR 25.0%
!! AATCTCCATATCTTTTTGTT+AGG + chr4_1:1974526-1974545 Msa0528970:intron 25.0%
! GTTATTCTGTAAAAGATTGA+AGG + chr4_1:1974680-1974699 Msa0528970:intron 25.0%
! ATACTTCAACATGTATTCAT+TGG + chr4_1:1974716-1974735 Msa0528970:intron 25.0%
!!! ACTAATTCTGAAATTCAAAG+AGG + chr4_1:1974743-1974762 Msa0528970:intron 25.0%
!!! CTAATTCTGAAATTCAAAGA+GGG + chr4_1:1974744-1974763 Msa0528970:intron 25.0%
!!! GACTGTTTTTTTTTAAGGAA+AGG - chr4_1:1974993-1975012 None:intergenic 25.0%
!!! TGGAAGACTGTTTTTTTTTA+AGG - chr4_1:1974998-1975017 None:intergenic 25.0%
! GATAGAAAATAAAATGTGCA+GGG - chr4_1:1975021-1975040 None:intergenic 25.0%
! TGATAGAAAATAAAATGTGC+AGG - chr4_1:1975022-1975041 None:intergenic 25.0%
! TTCTATCATATTTGATCCAA+TGG + chr4_1:1975034-1975053 Msa0528970:intron 25.0%
! AGAAAAGAAAATCTTACCAT+TGG - chr4_1:1975053-1975072 None:intergenic 25.0%
!! GGTAAGATTTTCTTTTCTAA+TGG + chr4_1:1975055-1975074 Msa0528970:intron 25.0%
! ATAAATTGGTCATACATGAT+GGG + chr4_1:1975094-1975113 Msa0528970:intron 25.0%
!! ACATCTTTATGACCATTTTA+TGG - chr4_1:1975326-1975345 None:intergenic 25.0%
!!! TAAACTTATTTTGTTGCGTT+TGG - chr4_1:1975424-1975443 None:intergenic 25.0%
!!! ATTGAGCATTGAAATGTTTT+TGG + chr4_1:1975752-1975771 Msa0528970:intron 25.0%
!! GTATGAAGTATTTGAAAGAA+TGG + chr4_1:1975793-1975812 Msa0528970:CDS 25.0%
! TTTGAAAGAATGGCATATTA+TGG + chr4_1:1975803-1975822 Msa0528970:CDS 25.0%
!! TAATTTTAAATACACCCCAT+GGG + chr4_1:1976276-1976295 Msa0528970:intron 25.0%
! TTTATTATACTCAGAACCTA+GGG - chr4_1:1976398-1976417 None:intergenic 25.0%
! ATTTATTATACTCAGAACCT+AGG - chr4_1:1976399-1976418 None:intergenic 25.0%
!!! ATTTGAAATCCACAGATTTT+TGG + chr4_1:1976460-1976479 Msa0528970:intron 25.0%
! TATAAAGTTCAATTCTCCTA+AGG + chr4_1:1976733-1976752 Msa0528970:intron 25.0%
!!! GAAAGTTTTGTATGCAATTA+CGG + chr4_1:1976755-1976774 Msa0528970:intron 25.0%
! GCTTCAAAGATTAATCTATA+CGG + chr4_1:1976787-1976806 Msa0528970:intron 25.0%
!!! ATTTACACTTTAAGATGAAC+AGG - chr4_1:1977300-1977319 None:intergenic 25.0%
! AGAGTGATATGTTTGATATT+TGG + chr4_1:1977615-1977634 Msa0528970:intron 25.0%
! AAAAATCACCAAATATCACA+TGG - chr4_1:1977802-1977821 None:intergenic 25.0%
! TGCTCTAATAACATTGTTAA+AGG - chr4_1:1977897-1977916 None:intergenic 25.0%
!!! TTCTTAGTTTTCTTTCTCTT+TGG + chr4_1:1978013-1978032 Msa0528970:intron 25.0%
!!! TCTTAGTTTTCTTTCTCTTT+GGG + chr4_1:1978014-1978033 Msa0528970:intron 25.0%
!! CATACATAAGCATTTTCTTT+TGG - chr4_1:1978145-1978164 None:intergenic 25.0%
! AAAAATACATCAAAGGTAGT+AGG + chr4_1:1978235-1978254 Msa0528970:intron 25.0%
! TCATATTAAAGATTCGATAG+TGG + chr4_1:1978307-1978326 Msa0528970:intron 25.0%
!! TGAATGTTAAGAACTTTTAG+TGG - chr4_1:1978416-1978435 None:intergenic 25.0%
! TAACATTCAATCTCAAGATA+AGG + chr4_1:1978427-1978446 Msa0528970:intron 25.0%
! TTTAATTGCTTGATCTGTAT+TGG + chr4_1:1978807-1978826 Msa0528970:intron 25.0%
!! TTACAATTAGCTGTGTTTTA+TGG + chr4_1:1978935-1978954 Msa0528970:CDS 25.0%
!!! AACTTTCATTTTTCAATTGG+TGG + chr4_1:1979062-1979081 Msa0528970:CDS 25.0%
! TAGAACAGTATTAGCAAAAA+GGG - chr4_1:1979110-1979129 None:intergenic 25.0%
! GTTTATATCCAAGATAATGT+AGG + chr4_1:1979130-1979149 Msa0528970:CDS 25.0%
! TATAGTTCTTTAGTATCATC+AGG - chr4_1:1979319-1979338 None:intergenic 25.0%
! AGAACTATATGAACTTGATA+TGG + chr4_1:1979330-1979349 Msa0528970:CDS 25.0%
!!! TGTAGTTTTACTTTGAGAAA+TGG + chr4_1:1979627-1979646 Msa0528970:intron 25.0%
! GGTTAACTATGTTTAATAGA+TGG + chr4_1:1979719-1979738 Msa0528970:intron 25.0%
! AAGAGACAAAACAAATGTTA+AGG + chr4_1:1980048-1980067 Msa0528970:CDS 25.0%
! AGCAAAATGAAAATACTCAA+AGG - chr4_1:1980431-1980450 None:intergenic 25.0%
! TCATATTCTTCAACTACATT+AGG + chr4_1:1980554-1980573 Msa0528970:CDS 25.0%
!! TTACAAGGCTTTATGTATAT+AGG + chr4_1:1980744-1980763 Msa0528970:CDS 25.0%
!! TACAAGGCTTTATGTATATA+GGG + chr4_1:1980745-1980764 Msa0528970:CDS 25.0%
!! TTTTTGCAAGAAGAATATCA+AGG + chr4_1:1981082-1981101 Msa0528970:three_prime_UTR 25.0%
TTATCAATAGAATGCATGTG+GGG - chr4_1:1974244-1974263 None:intergenic 30.0%
GATTATCAATAGAATGCATG+TGG - chr4_1:1974246-1974265 None:intergenic 30.0%
GAGAGAGAGATAAATATTTG+TGG + chr4_1:1974351-1974370 Msa0528970:five_prime_UTR 30.0%
GTTGAGTAAACAAAAGTTGA+AGG + chr4_1:1974375-1974394 Msa0528970:five_prime_UTR 30.0%
CAAAAGTTGAAGGATAACTA+TGG + chr4_1:1974385-1974404 Msa0528970:exon 30.0%
CATGGTGTAACAATTATTCA+TGG - chr4_1:1974563-1974582 None:intergenic 30.0%
CATAAATTGGTCATACATGA+TGG + chr4_1:1975093-1975112 Msa0528970:intron 30.0%
TAAATTGGTCATACATGATG+GGG + chr4_1:1975095-1975114 Msa0528970:intron 30.0%
CATCATGTAGGATAATACTT+TGG - chr4_1:1975281-1975300 None:intergenic 30.0%
AAGTAACAATGTCACCAATT+GGG + chr4_1:1975886-1975905 Msa0528970:CDS 30.0%
! TAATATAGGTGTCATCCAAA+TGG - chr4_1:1975918-1975937 None:intergenic 30.0%
ATTTGGATGACACCTATATT+AGG + chr4_1:1975917-1975936 Msa0528970:CDS 30.0%
ATTTCTTACCGAGAGATAAA+TGG - chr4_1:1975999-1976018 None:intergenic 30.0%
! CTCAAACTGAATAAAGTACT+AGG - chr4_1:1976145-1976164 None:intergenic 30.0%
TTCAGTTTGAGTCTCATAAT+AGG + chr4_1:1976154-1976173 Msa0528970:intron 30.0%
! GTAATTTTAAATACACCCCA+TGG + chr4_1:1976275-1976294 Msa0528970:intron 30.0%
TTGCATACAAAACTTTCCTT+AGG - chr4_1:1976752-1976771 None:intergenic 30.0%
AAATGAATTAGCAAGCAAGT+TGG + chr4_1:1976834-1976853 Msa0528970:intron 30.0%
! CTATGCTATAGTCAACATTT+TGG + chr4_1:1976875-1976894 Msa0528970:intron 30.0%
AAGGATAAGTTTCAAATGAC+TGG - chr4_1:1977096-1977115 None:intergenic 30.0%
TCAATGATACTACAAAGTCA+AGG - chr4_1:1977115-1977134 None:intergenic 30.0%
CTCCGTAAATATATTTCAGT+TGG + chr4_1:1977225-1977244 Msa0528970:intron 30.0%
TAGAGTCAGTGTTCTAATAT+GGG + chr4_1:1977266-1977285 Msa0528970:intron 30.0%
TCGGAGAGAATAACAAATTT+AGG + chr4_1:1977571-1977590 Msa0528970:intron 30.0%
CGGAGAGAATAACAAATTTA+GGG + chr4_1:1977572-1977591 Msa0528970:intron 30.0%
AAATATCACGTGTCAAACAA+GGG - chr4_1:1977664-1977683 None:intergenic 30.0%
TGCTATAAGAACATTGTCAA+AGG - chr4_1:1977765-1977784 None:intergenic 30.0%
AAGAATCTTATAGCTAACAG+TGG + chr4_1:1978524-1978543 Msa0528970:intron 30.0%
ATAGTTAAACCAGTTATAGC+AGG - chr4_1:1978672-1978691 None:intergenic 30.0%
TAGGGTGAAAATCATCAAAT+TGG - chr4_1:1979027-1979046 None:intergenic 30.0%
CTAGAACAGTATTAGCAAAA+AGG - chr4_1:1979111-1979130 None:intergenic 30.0%
TCAATTATGATATTCTTGGC+AGG + chr4_1:1979196-1979215 Msa0528970:CDS 30.0%
GGCAATTTGTGTCTATAAAA+GGG - chr4_1:1979226-1979245 None:intergenic 30.0%
AGGCAATTTGTGTCTATAAA+AGG - chr4_1:1979227-1979246 None:intergenic 30.0%
! TACTTTCCATTTTCTCAAAG+AGG - chr4_1:1979290-1979309 None:intergenic 30.0%
ACACATATCAATGTTAGACA+TGG + chr4_1:1979483-1979502 Msa0528970:intron 30.0%
AACTTCATTGACCACAAATT+TGG + chr4_1:1979784-1979803 Msa0528970:intron 30.0%
!! CTAAAAGTGTTGTCAAAACA+CGG - chr4_1:1979810-1979829 None:intergenic 30.0%
! ATTATTTAGGTTCCTAGACA+AGG + chr4_1:1979968-1979987 Msa0528970:intron 30.0%
ATTTGTTCCAAGTACAATGA+TGG + chr4_1:1980094-1980113 Msa0528970:CDS 30.0%
AATACCCTCTTTGTAAAACA+AGG + chr4_1:1980125-1980144 Msa0528970:CDS 30.0%
!!! TGTTCCTTGTTTTACAAAGA+GGG - chr4_1:1980132-1980151 None:intergenic 30.0%
!!! TTGTTCCTTGTTTTACAAAG+AGG - chr4_1:1980133-1980152 None:intergenic 30.0%
ATTACCCTTCTTCAAAGAAT+GGG + chr4_1:1980296-1980315 Msa0528970:CDS 30.0%
! AATTCCCATTCTTTGAAGAA+GGG - chr4_1:1980303-1980322 None:intergenic 30.0%
TGTTCTCCACACAATTATTA+TGG + chr4_1:1980328-1980347 Msa0528970:CDS 30.0%
CAACTACCATAATAATTGTG+TGG - chr4_1:1980337-1980356 None:intergenic 30.0%
! AAGCCTATAATTTTCTGTCA+CGG - chr4_1:1980363-1980382 None:intergenic 30.0%
AGAAAATTATAGGCTTAGAG+TGG + chr4_1:1980367-1980386 Msa0528970:CDS 30.0%
CTTCCTCAGTTTATACTTAT+GGG + chr4_1:1980449-1980468 Msa0528970:CDS 30.0%
! TTTCTTTTCCTTCAGTTCAT+TGG - chr4_1:1980801-1980820 None:intergenic 30.0%
TGAATAGAATGAGCTCAAAA+GGG - chr4_1:1981035-1981054 None:intergenic 30.0%
ATGAATAGAATGAGCTCAAA+AGG - chr4_1:1981036-1981055 None:intergenic 30.0%
TTTCTCTTCTTTCCTATCCA+AGG + chr4_1:1974266-1974285 Msa0528970:five_prime_UTR 35.0%
TTCTCTTCTTTCCTATCCAA+GGG + chr4_1:1974267-1974286 Msa0528970:five_prime_UTR 35.0%
TTGAAGGATAACTATGGAAG+AGG + chr4_1:1974391-1974410 Msa0528970:exon 35.0%
TGAAGGATAACTATGGAAGA+GGG + chr4_1:1974392-1974411 Msa0528970:exon 35.0%
! AAAGCTTGTTCCTTTGTTGT+TGG + chr4_1:1974500-1974519 Msa0528970:CDS 35.0%
! GGAGATTTTACCAACAACAA+AGG - chr4_1:1974513-1974532 None:intergenic 35.0%
! AGATTGAAGGGTGATAATGA+TGG + chr4_1:1974693-1974712 Msa0528970:intron 35.0%
! CTTCTCTCATTTCTCTCTTT+TGG - chr4_1:1974787-1974806 None:intergenic 35.0%
CAAAAGAGAGAAATGAGAGA+AGG + chr4_1:1974785-1974804 Msa0528970:intron 35.0%
AGAAAATAAAATGTGCAGGG+TGG - chr4_1:1975018-1975037 None:intergenic 35.0%
ATTAAATCTGAGCCACACAA+AGG - chr4_1:1975149-1975168 None:intergenic 35.0%
TGACAGGTAATACATCATGT+AGG - chr4_1:1975293-1975312 None:intergenic 35.0%
CACACTCGTTTACCATAAAA+TGG + chr4_1:1975311-1975330 Msa0528970:intron 35.0%
TTCACCAATGACGAATTGTT+CGG + chr4_1:1975483-1975502 Msa0528970:intron 35.0%
! TTTTCCGAACAATTCGTCAT+TGG - chr4_1:1975490-1975509 None:intergenic 35.0%
ACGAATTGTTCGGAAAAATC+TGG + chr4_1:1975493-1975512 Msa0528970:intron 35.0%
CGAATTGTTCGGAAAAATCT+GGG + chr4_1:1975494-1975513 Msa0528970:intron 35.0%
TTCCTGAGTGAAACAATTCT+TGG + chr4_1:1975522-1975541 Msa0528970:intron 35.0%
CAAGTAACAATGTCACCAAT+TGG + chr4_1:1975885-1975904 Msa0528970:CDS 35.0%
GCAACATAAGCACCTAATAT+AGG - chr4_1:1975932-1975951 None:intergenic 35.0%
AGTTTGAGTCTCATAATAGG+AGG + chr4_1:1976157-1976176 Msa0528970:intron 35.0%
ATGTCCACAGATTGCATTTA+AGG + chr4_1:1976189-1976208 Msa0528970:intron 35.0%
TCAACCTTAAATGCAATCTG+TGG - chr4_1:1976196-1976215 None:intergenic 35.0%
ATGCAAGAGGATACAAACAT+GGG - chr4_1:1976242-1976261 None:intergenic 35.0%
CCATCTAACATGTTACATGT+GGG - chr4_1:1976335-1976354 None:intergenic 35.0%
CCACATGTAACATGTTAGAT+GGG + chr4_1:1976333-1976352 Msa0528970:intron 35.0%
CAAGATTCAACCAAGATCTT+TGG + chr4_1:1976357-1976376 Msa0528970:intron 35.0%
AATGTTTGGCCAAAAATCTG+TGG - chr4_1:1976472-1976491 None:intergenic 35.0%
!!! ACAGATTTTTGGCCAAACAT+TGG + chr4_1:1976471-1976490 Msa0528970:intron 35.0%
AATTCGAACTTTACGTCGTT+TGG - chr4_1:1976696-1976715 None:intergenic 35.0%
! TGCTTGCTAATTCATTTGTG+TGG - chr4_1:1976831-1976850 None:intergenic 35.0%
! GCTATAGTCAACATTTTGGA+TGG + chr4_1:1976879-1976898 Msa0528970:intron 35.0%
GTAGAGTCAGTGTTCTAATA+TGG + chr4_1:1977265-1977284 Msa0528970:intron 35.0%
!! ACACTTTAAGATGAACAGGT+GGG - chr4_1:1977296-1977315 None:intergenic 35.0%
!! TACACTTTAAGATGAACAGG+TGG - chr4_1:1977297-1977316 None:intergenic 35.0%
CAAATATCACGTGTCAAACA+AGG - chr4_1:1977665-1977684 None:intergenic 35.0%
CTTGTTTGACACGTGATATT+TGG + chr4_1:1977663-1977682 Msa0528970:intron 35.0%
AACATGCTCCATGTGATATT+TGG + chr4_1:1977791-1977810 Msa0528970:intron 35.0%
!! TTAAAGATTCGATAGTGGAC+TGG + chr4_1:1978312-1978331 Msa0528970:intron 35.0%
! AACACTGCAAGACATTTTGT+TGG - chr4_1:1978356-1978375 None:intergenic 35.0%
!! CTTGAAAATTTGCTGCATGT+GGG - chr4_1:1978384-1978403 None:intergenic 35.0%
!! ACTTGAAAATTTGCTGCATG+TGG - chr4_1:1978385-1978404 None:intergenic 35.0%
TCAATCTCAAGATAAGGACA+TGG + chr4_1:1978433-1978452 Msa0528970:intron 35.0%
AAAGTCAATCCTGCTATAAC+TGG + chr4_1:1978660-1978679 Msa0528970:CDS 35.0%
TTCAGTGTAATGATAGGTGT+CGG - chr4_1:1978776-1978795 None:intergenic 35.0%
ACATCTAATTCATGGCATTG+TGG - chr4_1:1978890-1978909 None:intergenic 35.0%
CACAGCTAATTGTAATGTAG+AGG - chr4_1:1978930-1978949 None:intergenic 35.0%
AAACCCAACATATCAACCAT+TGG + chr4_1:1978995-1979014 Msa0528970:CDS 35.0%
TGGATGTTTAGCATCTTCTT+TGG + chr4_1:1979082-1979101 Msa0528970:CDS 35.0%
GGATGTTTAGCATCTTCTTT+GGG + chr4_1:1979083-1979102 Msa0528970:CDS 35.0%
ATATCCAAGATAATGTAGGG+TGG + chr4_1:1979134-1979153 Msa0528970:CDS 35.0%
GATATTGCTAATCCTAGAGT+TGG - chr4_1:1979178-1979197 None:intergenic 35.0%
TACTTTCACTAGAATGGCTA+GGG + chr4_1:1979255-1979274 Msa0528970:CDS 35.0%
! TAGTTGCCTCTTTGAGAAAA+TGG + chr4_1:1979281-1979300 Msa0528970:CDS 35.0%
! ATGGAAGAGTATGCTAAGAA+AGG + chr4_1:1979349-1979368 Msa0528970:CDS 35.0%
! TGGAAGAGTATGCTAAGAAA+GGG + chr4_1:1979350-1979369 Msa0528970:CDS 35.0%
TTGATTCTACTCCAACATTG+AGG + chr4_1:1979389-1979408 Msa0528970:CDS 35.0%
AGTACTTCATCTCTACTTGA+CGG + chr4_1:1979603-1979622 Msa0528970:intron 35.0%
! ACTTCCGCAACAACTTTTTA+AGG + chr4_1:1979674-1979693 Msa0528970:intron 35.0%
! CTTCCGCAACAACTTTTTAA+GGG + chr4_1:1979675-1979694 Msa0528970:intron 35.0%
!! TTCCGCAACAACTTTTTAAG+GGG + chr4_1:1979676-1979695 Msa0528970:intron 35.0%
AACCCCTTAAAAAGTTGTTG+CGG - chr4_1:1979681-1979700 None:intergenic 35.0%
!!! AATTTTTTAAGGGGTTCACG+TGG - chr4_1:1979849-1979868 None:intergenic 35.0%
GTTAAGGATGATTCCAATCT+TGG + chr4_1:1980064-1980083 Msa0528970:CDS 35.0%
ACAAATGTAGCAACCAAGAT+TGG - chr4_1:1980080-1980099 None:intergenic 35.0%
TCTATGACCGTTTCTTTGTA+AGG + chr4_1:1980240-1980259 Msa0528970:CDS 35.0%
GCATGATCCTTACAAAGAAA+CGG - chr4_1:1980250-1980269 None:intergenic 35.0%
AGATTAACCAAGAATCCAAG+AGG + chr4_1:1980272-1980291 Msa0528970:CDS 35.0%
GATTAACCAAGAATCCAAGA+GGG + chr4_1:1980273-1980292 Msa0528970:CDS 35.0%
GATTACCCTTCTTCAAAGAA+TGG + chr4_1:1980295-1980314 Msa0528970:CDS 35.0%
! CAATTCCCATTCTTTGAAGA+AGG - chr4_1:1980304-1980323 None:intergenic 35.0%
CTTCTTCAAAGAATGGGAAT+TGG + chr4_1:1980302-1980321 Msa0528970:CDS 35.0%
CATCCGTGACAGAAAATTAT+AGG + chr4_1:1980357-1980376 Msa0528970:CDS 35.0%
GAACATGGTTTAGTTGAAAG+TGG + chr4_1:1980395-1980414 Msa0528970:CDS 35.0%
GCTTCCTCAGTTTATACTTA+TGG + chr4_1:1980448-1980467 Msa0528970:CDS 35.0%
GTTCCCATAAGTATAAACTG+AGG - chr4_1:1980455-1980474 None:intergenic 35.0%
!! AACAGCTGATGCATTTTTAG+AGG + chr4_1:1980472-1980491 Msa0528970:CDS 35.0%
TCTTCAACTACATTAGGCAT+TGG + chr4_1:1980560-1980579 Msa0528970:CDS 35.0%
ACTAAGGAACATGGTCATAA+AGG + chr4_1:1980626-1980645 Msa0528970:CDS 35.0%
CTAAGGAACATGGTCATAAA+GGG + chr4_1:1980627-1980646 Msa0528970:CDS 35.0%
TGTATATAGGGCTGAAGTTT+CGG + chr4_1:1980757-1980776 Msa0528970:CDS 35.0%
TGAACTGAAGGAAAAGAAAG+CGG + chr4_1:1980802-1980821 Msa0528970:CDS 35.0%
CTTATTCTATAAGGTTCGCA+TGG - chr4_1:1980832-1980851 None:intergenic 35.0%
! TATTTTGCTCTTAGGTCCCT+TGG - chr4_1:1974286-1974305 None:intergenic 40.0%
GATGGAACTGTGAATCTCAA+AGG + chr4_1:1974443-1974462 Msa0528970:CDS 40.0%
!!! CCAGTTTTGGATCTAAGAAC+AGG - chr4_1:1974473-1974492 None:intergenic 40.0%
CCTGTTCTTAGATCCAAAAC+TGG + chr4_1:1974470-1974489 Msa0528970:CDS 40.0%
GTTCTTAGATCCAAAACTGG+TGG + chr4_1:1974473-1974492 Msa0528970:CDS 40.0%
TTAGATCCAAAACTGGTGGT+TGG + chr4_1:1974477-1974496 Msa0528970:CDS 40.0%
ATATTGCTCTCCTACAAGTG+TGG + chr4_1:1974813-1974832 Msa0528970:intron 40.0%
! CTCTCATTTTCCACACTTGT+AGG - chr4_1:1974826-1974845 None:intergenic 40.0%
GTGGCTCAGATTTAATGTCA+CGG - chr4_1:1975182-1975201 None:intergenic 40.0%
TTAAATCTGGGCCACACAAA+GGG - chr4_1:1975237-1975256 None:intergenic 40.0%
ATTAAATCTGGGCCACACAA+AGG - chr4_1:1975238-1975257 None:intergenic 40.0%
GTCACCGTGACATTAAATCT+GGG - chr4_1:1975138-1975157 None:intergenic 40.0%
TGTCACCGTGACATTAAATC+TGG - chr4_1:1975137-1975156 None:intergenic 40.0%
TTATGGTAAACGAGTGTGAC+AGG - chr4_1:1975309-1975328 None:intergenic 40.0%
ACCAAGAAATTGAGCTCAGA+TGG + chr4_1:1975451-1975470 Msa0528970:intron 40.0%
ACCATCTGAGCTCAATTTCT+TGG - chr4_1:1975455-1975474 None:intergenic 40.0%
ATGGTAATCCAGAGTGAGTT+CGG - chr4_1:1975570-1975589 None:intergenic 40.0%
!! TACATAGCGCTGGTTGAAAA+TGG - chr4_1:1975595-1975614 None:intergenic 40.0%
AACAATGTCACCAATTGGGT+TGG + chr4_1:1975890-1975909 Msa0528970:CDS 40.0%
ACAATGTCACCAATTGGGTT+GGG + chr4_1:1975891-1975910 Msa0528970:CDS 40.0%
GAAAAGTCCAAAAACGACCA+AGG - chr4_1:1975964-1975983 None:intergenic 40.0%
TGCATCCTCCATTTATCTCT+CGG + chr4_1:1975988-1976007 Msa0528970:CDS 40.0%
TCTTACCGAGAGATAAATGG+AGG - chr4_1:1975996-1976015 None:intergenic 40.0%
ATACAAACATGGGTAGGATG+AGG - chr4_1:1976232-1976251 None:intergenic 40.0%
AAGAGGATACAAACATGGGT+AGG - chr4_1:1976238-1976257 None:intergenic 40.0%
CATGCAAGAGGATACAAACA+TGG - chr4_1:1976243-1976262 None:intergenic 40.0%
CATGTTTGTATCCTCTTGCA+TGG + chr4_1:1976241-1976260 Msa0528970:intron 40.0%
TGTATCCTCTTGCATGGTAT+TGG + chr4_1:1976247-1976266 Msa0528970:intron 40.0%
ATAAGCTGGACAAAGCTATG+GGG - chr4_1:1976303-1976322 None:intergenic 40.0%
GATAAGCTGGACAAAGCTAT+GGG - chr4_1:1976304-1976323 None:intergenic 40.0%
AGATAAGCTGGACAAAGCTA+TGG - chr4_1:1976305-1976324 None:intergenic 40.0%
ACATGTTACATGTGGGAGTT+GGG - chr4_1:1976328-1976347 None:intergenic 40.0%
AACATGTTACATGTGGGAGT+TGG - chr4_1:1976329-1976348 None:intergenic 40.0%
CCCACATGTAACATGTTAGA+TGG + chr4_1:1976332-1976351 Msa0528970:intron 40.0%
CCCATCTAACATGTTACATG+TGG - chr4_1:1976336-1976355 None:intergenic 40.0%
CAACCAAGATCTTTGGCTAT+TGG + chr4_1:1976364-1976383 Msa0528970:intron 40.0%
!! TTGGCCAAACATTGGTTCTA+TGG + chr4_1:1976479-1976498 Msa0528970:intron 40.0%
GTTGCCATAGAACCAATGTT+TGG - chr4_1:1976486-1976505 None:intergenic 40.0%
TACTAGGCTGCTTGCATAAT+TGG - chr4_1:1976927-1976946 None:intergenic 40.0%
AATTATGCAAGCAGCCTAGT+AGG + chr4_1:1976926-1976945 Msa0528970:intron 40.0%
!! TGCTGTTGACTTATCCTACT+AGG - chr4_1:1976943-1976962 None:intergenic 40.0%
GAATCAAACTCACTGTGACT+AGG - chr4_1:1978268-1978287 None:intergenic 40.0%
! TTGCAGCATGCTCAATGTTT+TGG + chr4_1:1978566-1978585 Msa0528970:intron 40.0%
ATGATCTCACAGACACTTCT+CGG + chr4_1:1978709-1978728 Msa0528970:CDS 40.0%
TGATCTGTATTGGAACATGC+AGG + chr4_1:1978817-1978836 Msa0528970:intron 40.0%
GATCTGTATTGGAACATGCA+GGG + chr4_1:1978818-1978837 Msa0528970:intron 40.0%
TCTAATTCATGGCATTGTGG+TGG - chr4_1:1978887-1978906 None:intergenic 40.0%
GCACTTTACACTCTAGCAAT+AGG + chr4_1:1978959-1978978 Msa0528970:CDS 40.0%
TACACTCTAGCAATAGGAAC+AGG + chr4_1:1978965-1978984 Msa0528970:CDS 40.0%
! GCACCAATGGTTGATATGTT+GGG - chr4_1:1979001-1979020 None:intergenic 40.0%
! AGCACCAATGGTTGATATGT+TGG - chr4_1:1979002-1979021 None:intergenic 40.0%
ATCAAATTGGTCAGCACCAA+TGG - chr4_1:1979014-1979033 None:intergenic 40.0%
GGATATGCTTTACCAACTCT+AGG + chr4_1:1979163-1979182 Msa0528970:CDS 40.0%
TATAGACACAAATTGCCTGC+AGG + chr4_1:1979229-1979248 Msa0528970:CDS 40.0%
ATAGACACAAATTGCCTGCA+GGG + chr4_1:1979230-1979249 Msa0528970:CDS 40.0%
!! AGGGAGTACTTTCACTAGAA+TGG + chr4_1:1979249-1979268 Msa0528970:CDS 40.0%
GTACTTTCACTAGAATGGCT+AGG + chr4_1:1979254-1979273 Msa0528970:CDS 40.0%
!! TGAAGTACTGACACAAACGT+CGG - chr4_1:1979592-1979611 None:intergenic 40.0%
! TTGCGGAAGTCGTCTAAAAT+TGG - chr4_1:1979664-1979683 None:intergenic 40.0%
GTTAACGCAGTTCAAATAGG+TGG + chr4_1:1979698-1979717 Msa0528970:intron 40.0%
TCAAAACACGGCCAAATTTG+TGG - chr4_1:1979798-1979817 None:intergenic 40.0%
! TTTTGACACTTGCCTTGTCT+AGG - chr4_1:1979983-1980002 None:intergenic 40.0%
GTAACTGTGCATAACATCCA+TGG - chr4_1:1980020-1980039 None:intergenic 40.0%
ACTTGAGCCATCATTGTACT+TGG - chr4_1:1980104-1980123 None:intergenic 40.0%
ACAACACTTGACAGACACAT+TGG + chr4_1:1980149-1980168 Msa0528970:CDS 40.0%
ACAAATGCAGCTAAACTTGC+TGG - chr4_1:1980191-1980210 None:intergenic 40.0%
CTTAGAGTGGCAAAAGAACA+TGG + chr4_1:1980380-1980399 Msa0528970:CDS 40.0%
CATGGTTTAGTTGAAAGTGG+AGG + chr4_1:1980398-1980417 Msa0528970:CDS 40.0%
CCAATACTCTTCATGCTTTC+TGG - chr4_1:1980530-1980549 None:intergenic 40.0%
! CCAGAAAGCATGAAGAGTAT+TGG + chr4_1:1980527-1980546 Msa0528970:CDS 40.0%
GACTGTATCGCGTATAACTA+AGG + chr4_1:1980610-1980629 Msa0528970:CDS 40.0%
TCGCGTATAACTAAGGAACA+TGG + chr4_1:1980617-1980636 Msa0528970:CDS 40.0%
! TTACTACTACGCGTTTTTCG+CGG + chr4_1:1980685-1980704 Msa0528970:CDS 40.0%
TCTTCTTCGCGATTGTTACA+AGG + chr4_1:1980729-1980748 Msa0528970:CDS 40.0%
! AAGGAGGAGTACACAGAAGA+TGG + chr4_1:1974425-1974444 Msa0528970:CDS 45.0%
! AGCTTTCCAACCACCAGTTT+TGG - chr4_1:1974486-1974505 None:intergenic 45.0%
! ATTGGTCATACATGATGGGG+TGG + chr4_1:1975098-1975117 Msa0528970:intron 45.0%
! ACACAAAGGTGTGTGTTGTG+TGG - chr4_1:1975164-1975183 None:intergenic 45.0%
ACACAACACACACCTTTGTG+TGG + chr4_1:1975163-1975182 Msa0528970:intron 45.0%
TGTCACCCATACAACACATC+TGG + chr4_1:1975197-1975216 Msa0528970:intron 45.0%
GTCACCCATACAACACATCT+GGG + chr4_1:1975198-1975217 Msa0528970:intron 45.0%
ACACAAAGGGTTGTGTTGTG+TGG - chr4_1:1975224-1975243 None:intergenic 45.0%
ACACAACACAACCCTTTGTG+TGG + chr4_1:1975223-1975242 Msa0528970:intron 45.0%
GTGGCCCAGATTTAATGTCA+CGG + chr4_1:1975242-1975261 Msa0528970:intron 45.0%
GGCCAAGAATTGTTTCACTC+AGG - chr4_1:1975527-1975546 None:intergenic 45.0%
TCAACCAGCGCTATGTAGAA+AGG + chr4_1:1975598-1975617 Msa0528970:intron 45.0%
TAGACCTTTCTACATAGCGC+TGG - chr4_1:1975605-1975624 None:intergenic 45.0%
GAAGCTTCTTTGTGAGGAAG+AGG - chr4_1:1975847-1975866 None:intergenic 45.0%
CTTGGTGAAGCTTCTTTGTG+AGG - chr4_1:1975853-1975872 None:intergenic 45.0%
CTCACAAAGAAGCTTCACCA+AGG + chr4_1:1975851-1975870 Msa0528970:CDS 45.0%
TACTTGCAGTCACTGTTCCT+TGG - chr4_1:1975871-1975890 None:intergenic 45.0%
TATGTTGCTGATGCTCACCT+TGG + chr4_1:1975944-1975963 Msa0528970:CDS 45.0%
!! ATGCTCACCTTGGTCGTTTT+TGG + chr4_1:1975954-1975973 Msa0528970:CDS 45.0%
! ATCCTCTTGCATGGTATTGG+CGG + chr4_1:1976250-1976269 Msa0528970:intron 45.0%
GTGCCAATAGCCAAAGATCT+TGG - chr4_1:1976370-1976389 None:intergenic 45.0%
TGTTGGACCTTAAGAACCCT+TGG - chr4_1:1978339-1978358 None:intergenic 45.0%
ATAAGGACATGGTGCTCTGT+GGG + chr4_1:1978444-1978463 Msa0528970:intron 45.0%
TCACAGACACTTCTCGGATT+AGG + chr4_1:1978715-1978734 Msa0528970:CDS 45.0%
!! GTAATGATAGGTGTCGGTGT+CGG - chr4_1:1978770-1978789 None:intergenic 45.0%
ACTCTAGCAATAGGAACAGG+TGG + chr4_1:1978968-1978987 Msa0528970:CDS 45.0%
GAGTCCACCCTACATTATCT+TGG - chr4_1:1979141-1979160 None:intergenic 45.0%
! GATAATGTAGGGTGGACTCT+TGG + chr4_1:1979142-1979161 Msa0528970:CDS 45.0%
GGGGTTAACGCAGTTCAAAT+AGG + chr4_1:1979695-1979714 Msa0528970:intron 45.0%
GACAAGGCAAGTGTCAAAAC+AGG + chr4_1:1979984-1980003 Msa0528970:CDS 45.0%
AAACAGGCTCAACTAGTCCA+TGG + chr4_1:1980000-1980019 Msa0528970:CDS 45.0%
!! AATGCAGCTAAACTTGCTGG+TGG - chr4_1:1980188-1980207 None:intergenic 45.0%
GAGCACTACACAAACAAGCA+AGG - chr4_1:1980222-1980241 None:intergenic 45.0%
GGTAATCCCTCTTGGATTCT+TGG - chr4_1:1980282-1980301 None:intergenic 45.0%
TGAAGAAGGGTAATCCCTCT+TGG - chr4_1:1980290-1980309 None:intergenic 45.0%
TACGCGATACAGTCGACAAA+AGG - chr4_1:1980604-1980623 None:intergenic 45.0%
AGGAACATGGTCATAAAGGG+TGG + chr4_1:1980630-1980649 Msa0528970:CDS 45.0%
CATGCTTGCCAATGAACTGA+AGG + chr4_1:1980790-1980809 Msa0528970:CDS 45.0%
!! AATATTAAAAGTAATTAAAT+TGG + chr4_1:1977480-1977499 Msa0528970:intron 5.0%
TGCTCTTAGGTCCCTTGGAT+AGG - chr4_1:1974281-1974300 None:intergenic 50.0%
! TACATGATGGGGTGGCACTT+TGG + chr4_1:1975106-1975125 Msa0528970:intron 50.0%
GTGGCCCAGATGTGTTGTAT+GGG - chr4_1:1975205-1975224 None:intergenic 50.0%
TGTGGCCCAGATGTGTTGTA+TGG - chr4_1:1975206-1975225 None:intergenic 50.0%
GTCGTGAGATAAGGACAGTC+TGG - chr4_1:1975548-1975567 None:intergenic 50.0%
GTGAGTTCGGTCGTGAGATA+AGG - chr4_1:1975557-1975576 None:intergenic 50.0%
!! GCGCTGGTTGAAAATGGTCA+TGG - chr4_1:1975589-1975608 None:intergenic 50.0%
CCAAATGGTCCCAACCCAAT+TGG - chr4_1:1975903-1975922 None:intergenic 50.0%
!! CCAATTGGGTTGGGACCATT+TGG + chr4_1:1975900-1975919 Msa0528970:CDS 50.0%
!! TCCTCTTGCATGGTATTGGC+GGG + chr4_1:1976251-1976270 Msa0528970:intron 50.0%
ACAAAGCTATGGGGTCCCAT+GGG - chr4_1:1976294-1976313 None:intergenic 50.0%
GCTATTGGCACATGTTCCCT+AGG + chr4_1:1976379-1976398 Msa0528970:intron 50.0%
AGTCAACAGCAGCTATCGAC+CGG + chr4_1:1976952-1976971 Msa0528970:intron 50.0%
!! TTCGATAGTGGACTGGACCA+AGG + chr4_1:1978319-1978338 Msa0528970:intron 50.0%
!! TCGATAGTGGACTGGACCAA+GGG + chr4_1:1978320-1978339 Msa0528970:intron 50.0%
GACTGGACCAAGGGTTCTTA+AGG + chr4_1:1978329-1978348 Msa0528970:intron 50.0%
GATAAGGACATGGTGCTCTG+TGG + chr4_1:1978443-1978462 Msa0528970:intron 50.0%
TAAGGACATGGTGCTCTGTG+GGG + chr4_1:1978445-1978464 Msa0528970:intron 50.0%
! TTCTCGGATTAGGCGTGTTC+TGG + chr4_1:1978725-1978744 Msa0528970:CDS 50.0%
GATTAGGCGTGTTCTGGTGT+CGG + chr4_1:1978731-1978750 Msa0528970:intron 50.0%
CATTGTGGTGGCTTCAAGGT+AGG - chr4_1:1978875-1978894 None:intergenic 50.0%
ATGGCATTGTGGTGGCTTCA+AGG - chr4_1:1978879-1978898 None:intergenic 50.0%
!! CTAGTGAAAGTACTCCCTGC+AGG - chr4_1:1979247-1979266 None:intergenic 50.0%
GGAAGAGGGCAGAGTAGTGA+AGG + chr4_1:1974406-1974425 Msa0528970:CDS 55.0%
AGAGGGCAGAGTAGTGAAGG+AGG + chr4_1:1974409-1974428 Msa0528970:CDS 55.0%
TCTCACGACCGAACTCACTC+TGG + chr4_1:1975559-1975578 Msa0528970:intron 55.0%
TCCCGCCAATACCATGCAAG+AGG - chr4_1:1976255-1976274 None:intergenic 55.0%
CAAAGCTATGGGGTCCCATG+GGG - chr4_1:1976293-1976312 None:intergenic 55.0%
GACAAAGCTATGGGGTCCCA+TGG - chr4_1:1976295-1976314 None:intergenic 55.0%
GTGGGAGTTGGGAGATAAGC+TGG - chr4_1:1976317-1976336 None:intergenic 55.0%
ATGGTGCTCTGTGGGGCTAG+TGG + chr4_1:1978452-1978471 Msa0528970:intron 60.0%
! TGGTGCTCTGTGGGGCTAGT+GGG + chr4_1:1978453-1978472 Msa0528970:intron 60.0%
!! CTCTGTGGGGCTAGTGGGTT+GGG + chr4_1:1978458-1978477 Msa0528970:intron 60.0%
! GCTCTGTGGGGCTAGTGGGT+TGG + chr4_1:1978457-1978476 Msa0528970:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 1974219 1981140 1974219 ID=Msa0528970;Name=Msa0528970
chr4_1 mRNA 1974219 1981140 1974219 ID=Msa0528970-mRNA-1;Parent=Msa0528970;Name=Msa0528970-mRNA-1;_AED=0.25;_eAED=0.25;_QI=185|0.5|0.8|1|1|1|5|290|623
chr4_1 exon 1974219 1974521 1974219 ID=Msa0528970-mRNA-1:exon:598;Parent=Msa0528970-mRNA-1
chr4_1 exon 1975792 1976009 1975792 ID=Msa0528970-mRNA-1:exon:599;Parent=Msa0528970-mRNA-1
chr4_1 exon 1978657 1978746 1978657 ID=Msa0528970-mRNA-1:exon:600;Parent=Msa0528970-mRNA-1
chr4_1 exon 1978839 1979410 1978839 ID=Msa0528970-mRNA-1:exon:601;Parent=Msa0528970-mRNA-1
chr4_1 exon 1979977 1981140 1979977 ID=Msa0528970-mRNA-1:exon:602;Parent=Msa0528970-mRNA-1
chr4_1 five_prime_UTR 1974219 1974403 1974219 ID=Msa0528970-mRNA-1:five_prime_utr;Parent=Msa0528970-mRNA-1
chr4_1 CDS 1974404 1974521 1974404 ID=Msa0528970-mRNA-1:cds;Parent=Msa0528970-mRNA-1
chr4_1 CDS 1975792 1976009 1975792 ID=Msa0528970-mRNA-1:cds;Parent=Msa0528970-mRNA-1
chr4_1 CDS 1978657 1978746 1978657 ID=Msa0528970-mRNA-1:cds;Parent=Msa0528970-mRNA-1
chr4_1 CDS 1978839 1979410 1978839 ID=Msa0528970-mRNA-1:cds;Parent=Msa0528970-mRNA-1
chr4_1 CDS 1979977 1980850 1979977 ID=Msa0528970-mRNA-1:cds;Parent=Msa0528970-mRNA-1
chr4_1 three_prime_UTR 1980851 1981140 1980851 ID=Msa0528970-mRNA-1:three_prime_utr;Parent=Msa0528970-mRNA-1
Gene Sequence

>Msa0528970

ATGGAAGAGGGCAGAGTAGTGAAGGAGGAGTACACAGAAGATGGAACTGTGAATCTCAAAGGAAAACCTGTTCTTAGATCCAAAACTGGTGGTTGGAAAGCTTGTTCCTTTGTTGTTGTGTATGAAGTATTTGAAAGAATGGCATATTATGGAATATCATCGAATTTGATCCTCTTCCTCACAAAGAAGCTTCACCAAGGAACAGTGACTGCAAGTAACAATGTCACCAATTGGGTTGGGACCATTTGGATGACACCTATATTAGGTGCTTATGTTGCTGATGCTCACCTTGGTCGTTTTTGGACTTTTCTCATTGCATCCTCCATTTATCTCTCGGTCAAAGTCAATCCTGCTATAACTGGTTTAACTATTATGTCATCAATTTTTAATGATCTCACAGACACTTCTCGGATTAGGCGTGTTCTGGGTATGTCTCTGCTTACACTAGCAGTGTCACTTCCTACCTTGAAGCCACCACAATGCCATGAATTAGATGTAACAAAATGCAAAAAAGCCTCTACATTACAATTAGCTGTGTTTTATGGTGCACTTTACACTCTAGCAATAGGAACAGGTGGAACAAAACCCAACATATCAACCATTGGTGCTGACCAATTTGATGATTTTCACCCTAAAGAAAAATCACATAAACTTTCATTTTTCAATTGGTGGATGTTTAGCATCTTCTTTGGGACCCTTTTTGCTAATACTGTTCTAGTTTATATCCAAGATAATGTAGGGTGGACTCTTGGATATGCTTTACCAACTCTAGGATTAGCAATATCAATTATGATATTCTTGGCAGGAACACCCTTTTATAGACACAAATTGCCTGCAGGGAGTACTTTCACTAGAATGGCTAGGGTTATAGTTGCCTCTTTGAGAAAATGGAAAGTACATGTTCCTGATGATACTAAAGAACTATATGAACTTGATATGGAAGAGTATGCTAAGAAAGGGAGTAACACTTACAGAATTGATTCTACTCCAACATTGAGGTTCCTAGACAAGGCAAGTGTCAAAACAGGCTCAACTAGTCCATGGATGTTATGCACAGTTACACATGTAGAAGAGACAAAACAAATGTTAAGGATGATTCCAATCTTGGTTGCTACATTTGTTCCAAGTACAATGATGGCTCAAGTAAATACCCTCTTTGTAAAACAAGGAACAACACTTGACAGACACATTGGAAGCTTCAAAATTCCACCAGCAAGTTTAGCTGCATTTGTCACATTGTCCTTGCTTGTTTGTGTAGTGCTCTATGACCGTTTCTTTGTAAGGATCATGCAGAGATTAACCAAGAATCCAAGAGGGATTACCCTTCTTCAAAGAATGGGAATTGGTCTTGTTCTCCACACAATTATTATGGTAGTTGCATCCGTGACAGAAAATTATAGGCTTAGAGTGGCAAAAGAACATGGTTTAGTTGAAAGTGGAGGACAAGTTCCTTTGAGTATTTTCATTTTGCTTCCTCAGTTTATACTTATGGGAACAGCTGATGCATTTTTAGAGGTTGCGAAAATCGAGTTTTTCTATGATCAAGCTCCAGAAAGCATGAAGAGTATTGGAACTTCATATTCTTCAACTACATTAGGCATTGGAAATTTCATCAGTTCATTCCTTTTGTCGACTGTATCGCGTATAACTAAGGAACATGGTCATAAAGGGTGGATTTTGAACAATCTGAATGATTCTCATCTTGATTACTACTACGCGTTTTTCGCGGTGTTGAACTTCTTGAACTTAATCTTCTTCGCGATTGTTACAAGGCTTTATGTATATAGGGCTGAAGTTTCGGATTCTATAGACATGCTTGCCAATGAACTGAAGGAAAAGAAAGCGGTTAACCATGCGAACCTTATAGAATAA
Protein sequence

>Msa0528970

MEEGRVVKEEYTEDGTVNLKGKPVLRSKTGGWKACSFVVVYEVFERMAYYGISSNLILFLTKKLHQGTVTASNNVTNWVGTIWMTPILGAYVADAHLGRFWTFLIASSIYLSVKVNPAITGLTIMSSIFNDLTDTSRIRRVLGMSLLTLAVSLPTLKPPQCHELDVTKCKKASTLQLAVFYGALYTLAIGTGGTKPNISTIGADQFDDFHPKEKSHKLSFFNWWMFSIFFGTLFANTVLVYIQDNVGWTLGYALPTLGLAISIMIFLAGTPFYRHKLPAGSTFTRMARVIVASLRKWKVHVPDDTKELYELDMEEYAKKGSNTYRIDSTPTLRFLDKASVKTGSTSPWMLCTVTHVEETKQMLRMIPILVATFVPSTMMAQVNTLFVKQGTTLDRHIGSFKIPPASLAAFVTLSLLVCVVLYDRFFVRIMQRLTKNPRGITLLQRMGIGLVLHTIIMVVASVTENYRLRVAKEHGLVESGGQVPLSIFILLPQFILMGTADAFLEVAKIEFFYDQAPESMKSIGTSYSSTTLGIGNFISSFLLSTVSRITKEHGHKGWILNNLNDSHLDYYYAFFAVLNFLNLIFFAIVTRLYVYRAEVSDSIDMLANELKEKKAVNHANLIE*