Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1297180 | G7JF71 | 64.493 | 138 | 14 | 2 | 1 | 103 | 1 | 138 | 3.25e-44 | 153 |
| Msa1297180 | G7JF71 | 94.444 | 72 | 4 | 0 | 105 | 176 | 47 | 118 | 2.40e-39 | 140 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1297180 | Msa1399560 | 0.800800 | 1.216029e-48 | -8.615850e-47 |
| Msa1197590 | Msa1297180 | 0.803492 | 3.397553e-49 | -8.615850e-47 |
| Msa1205210 | Msa1297180 | 0.895928 | 6.007931e-76 | -8.615850e-47 |
| Msa1205960 | Msa1297180 | 0.821305 | 4.333859e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1297180 | MtrunA17_Chr4g0054221 | 64.493 | 138 | 14 | 2 | 1 | 103 | 1 | 138 | 6.25e-48 | 153 |
| Msa1297180 | MtrunA17_Chr4g0054221 | 94.444 | 72 | 4 | 0 | 105 | 176 | 47 | 118 | 4.63e-43 | 140 |
| Msa1297180 | MtrunA17_Chr4g0054211 | 44.643 | 112 | 34 | 4 | 4 | 87 | 5 | 116 | 1.31e-17 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 44 sgRNAs with CRISPR-Local
Find 311 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTTTACCAGGAACCTTAA+TGG | 0.240275 | 8_3:-57107252 | None:intergenic |
| GCAAAGGAAGCAAGCTCATC+AGG | 0.362279 | 8_3:+57107217 | Msa1297180:CDS |
| GGTACATGAAGGCACCATTA+AGG | 0.367361 | 8_3:+57107238 | Msa1297180:CDS |
| CGGAGTCGCAGTGTTGGAAT+TGG | 0.390004 | 8_3:+57112239 | Msa1297180:CDS |
| GATGAAAATCGTGTTGAGTT+AGG | 0.392028 | 8_3:+57112194 | Msa1297180:CDS |
| CACAAGTGATGATGATTTCA+AGG | 0.407959 | 8_3:+57107407 | Msa1297180:CDS |
| GTAGGACATCCCATGGTTGC+AGG | 0.417097 | 8_3:-57112065 | None:intergenic |
| TCGTAAGGGCTGCGTCGCTT+AGG | 0.434996 | 8_3:+57107433 | Msa1297180:CDS |
| CACAAGTGATGATGATTTCA+AGG | 0.436445 | 8_3:+57112139 | Msa1297180:CDS |
| GAAGGCACCATTAAGGTTCC+TGG | 0.439699 | 8_3:+57107245 | Msa1297180:CDS |
| CGCAACTTTACTCCTTTCCT+AGG | 0.451673 | 8_3:+57112087 | Msa1297180:CDS |
| ACCATTAAGGTTCCTGGTAA+AGG | 0.453532 | 8_3:+57107251 | Msa1297180:CDS |
| TTCTACTTCTAGAATAAAGA+AGG | 0.470579 | 8_3:-57107590 | None:intergenic |
| AGATGAAAATCGTGTTGAGT+TGG | 0.472358 | 8_3:+57107461 | Msa1297180:CDS |
| AGGATTCGATGAAAGTTCTT+CGG | 0.483792 | 8_3:+57107487 | Msa1297180:CDS |
| CTATGTAGATCCTGCAACCA+TGG | 0.486263 | 8_3:+57112055 | Msa1297180:intron |
| GATGAAAATCGTGTTGAGTT+GGG | 0.495351 | 8_3:+57107462 | Msa1297180:CDS |
| AAGGTTCCTGGTAAAGGTAA+AGG | 0.501075 | 8_3:+57107257 | Msa1297180:CDS |
| CGGAGTCACAGTGTTGGCAT+TGG | 0.501191 | 8_3:+57107507 | Msa1297180:CDS |
| AAATCGTGTTGAGTTGGGTA+AGG | 0.512990 | 8_3:+57107467 | Msa1297180:CDS |
| GTCACAGTGTTGGCATTGGA+AGG | 0.517691 | 8_3:+57107511 | Msa1297180:CDS |
| GAGTTAACACTGAAGCTCCT+AGG | 0.519744 | 8_3:-57112104 | None:intergenic |
| TCGTAAGGGCTGCGTCACTT+AGG | 0.537263 | 8_3:+57112165 | Msa1297180:CDS |
| GTGCCTCGGAGTCGCAGTGT+TGG | 0.539129 | 8_3:+57112233 | Msa1297180:CDS |
| TCTACTTCTAGAATAAAGAA+GGG | 0.539427 | 8_3:-57107589 | None:intergenic |
| ACATGTCCTTTACCTTTACC+AGG | 0.540520 | 8_3:-57107263 | None:intergenic |
| ATGATTTCAAGGAACTCGTA+AGG | 0.547916 | 8_3:+57107418 | Msa1297180:CDS |
| ATGATTTCAAGGAACTCGTA+AGG | 0.547916 | 8_3:+57112150 | Msa1297180:CDS |
| TGAAGATGATGATAATATCA+AGG | 0.548852 | 8_3:+57107560 | Msa1297180:CDS |
| TATGTAGATCCTGCAACCAT+GGG | 0.570418 | 8_3:+57112056 | Msa1297180:intron |
| CTTGAAATCATCATCACTTG+TGG | 0.574189 | 8_3:-57107406 | None:intergenic |
| CTTGAAATCATCATCACTTG+TGG | 0.583473 | 8_3:-57112138 | None:intergenic |
| GTCGCAGTGTTGGAATTGGA+AGG | 0.585409 | 8_3:+57112243 | Msa1297180:CDS |
| GTTCTTCGGAGTCACAGTGT+TGG | 0.605231 | 8_3:+57107501 | Msa1297180:CDS |
| AACACTGAAGCTCCTAGGAA+AGG | 0.606093 | 8_3:-57112099 | None:intergenic |
| GGAAAGGAGTAAAGTTGCGT+AGG | 0.616682 | 8_3:-57112083 | None:intergenic |
| CGAAAGCGATGAAAGTGCCT+CGG | 0.617025 | 8_3:+57112219 | Msa1297180:CDS |
| CAAGCTCATCAGGTACATGA+AGG | 0.617983 | 8_3:+57107227 | Msa1297180:CDS |
| CTACTTCTAGAATAAAGAAG+GGG | 0.626161 | 8_3:-57107588 | None:intergenic |
| TGATTTCAAGGAACTCGTAA+GGG | 0.632665 | 8_3:+57107419 | Msa1297180:CDS |
| TGATTTCAAGGAACTCGTAA+GGG | 0.632665 | 8_3:+57112151 | Msa1297180:CDS |
| AAGTTGCGTAGGACATCCCA+TGG | 0.638342 | 8_3:-57112072 | None:intergenic |
| ATTCCAACACTGCGACTCCG+AGG | 0.689214 | 8_3:-57112236 | None:intergenic |
| TGGAAGGATTGAAGAAGACG+AGG | 0.696092 | 8_3:+57107527 | Msa1297180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATAATCATGATTAATT+TGG | - | chr8_3:57111436-57111455 | None:intergenic | 10.0% |
| !!! | TTAGATTTTTTTTTTATTGT+TGG | - | chr8_3:57111469-57111488 | None:intergenic | 10.0% |
| !!! | TATAGAAAAATTTGTTTAAT+TGG | + | chr8_3:57111526-57111545 | Msa1297180:intron | 10.0% |
| !!! | ATAGAAAAATTTGTTTAATT+GGG | + | chr8_3:57111527-57111546 | Msa1297180:intron | 10.0% |
| !! | TTAATATATAGTATAGATAA+TGG | + | chr8_3:57111823-57111842 | Msa1297180:intron | 10.0% |
| !! | TAATATATAGTATAGATAAT+GGG | + | chr8_3:57111824-57111843 | Msa1297180:intron | 10.0% |
| !! | TTTAAAAAATAGTAATTAGA+GGG | - | chr8_3:57111850-57111869 | None:intergenic | 10.0% |
| !!! | AAATATGTTTTAATTATAAC+AGG | + | chr8_3:57112367-57112386 | Msa1297180:intron | 10.0% |
| !! | AATCTTAATTAATATGATAT+TGG | + | chr8_3:57112653-57112672 | Msa1297180:intron | 10.0% |
| !!! | GAATTTTTAATCTTTTTTAG+AGG | + | chr8_3:57107815-57107834 | Msa1297180:intron | 15.0% |
| !! | TTGACATAAAGTTAATAATA+GGG | - | chr8_3:57108341-57108360 | None:intergenic | 15.0% |
| !! | ATTGACATAAAGTTAATAAT+AGG | - | chr8_3:57108342-57108361 | None:intergenic | 15.0% |
| !! | ATGCATAATAAAATATCAAA+TGG | + | chr8_3:57108692-57108711 | Msa1297180:intron | 15.0% |
| !! | ATCTTTATTATGGATATAAT+TGG | + | chr8_3:57109267-57109286 | Msa1297180:intron | 15.0% |
| !!! | ATGGTGAAAATATATTTTTT+TGG | + | chr8_3:57109726-57109745 | Msa1297180:intron | 15.0% |
| !!! | GCATATAATGATTTTTAAAA+AGG | - | chr8_3:57110000-57110019 | None:intergenic | 15.0% |
| !!! | TTACACTTTTTAAATGATAA+AGG | + | chr8_3:57111587-57111606 | Msa1297180:intron | 15.0% |
| !!! | TACACTTTTTAAATGATAAA+GGG | + | chr8_3:57111588-57111607 | Msa1297180:intron | 15.0% |
| !!! | CTTTAAAAAATAGTAATTAG+AGG | - | chr8_3:57111851-57111870 | None:intergenic | 15.0% |
| !! | ATATTTATTAACTAAAGTGA+AGG | - | chr8_3:57112555-57112574 | None:intergenic | 15.0% |
| !! | ATTCACATATTGTTTATTCA+TGG | + | chr8_3:57107776-57107795 | Msa1297180:intron | 20.0% |
| !! | TTCACATATTGTTTATTCAT+GGG | + | chr8_3:57107777-57107796 | Msa1297180:intron | 20.0% |
| !!! | TTAATCTTTTTTAGAGGAAT+TGG | + | chr8_3:57107821-57107840 | Msa1297180:intron | 20.0% |
| !!! | TTTCTTTCATTGACTTTATT+TGG | - | chr8_3:57108019-57108038 | None:intergenic | 20.0% |
| !! | GTAATAATTAATGACATGAA+TGG | - | chr8_3:57108410-57108429 | None:intergenic | 20.0% |
| !! | TATCTTGTTAATTATACGAA+TGG | - | chr8_3:57108604-57108623 | None:intergenic | 20.0% |
| !! | CTATCTTAATAAACTTAAAG+AGG | - | chr8_3:57108722-57108741 | None:intergenic | 20.0% |
| !! | TAACGTTTGAAAATTATGAA+CGG | + | chr8_3:57109077-57109096 | Msa1297180:intron | 20.0% |
| !!! | TAGTTTGTTATGCTTTTTAA+AGG | + | chr8_3:57109322-57109341 | Msa1297180:intron | 20.0% |
| !!! | TTATGCTTTTTAAAGGATAA+AGG | + | chr8_3:57109329-57109348 | Msa1297180:intron | 20.0% |
| !!! | TATGCTTTTTAAAGGATAAA+GGG | + | chr8_3:57109330-57109349 | Msa1297180:intron | 20.0% |
| !! | GTATAATAACAACATATTCT+TGG | + | chr8_3:57109367-57109386 | Msa1297180:intron | 20.0% |
| !! | ATCTGATATATATCACATAA+AGG | - | chr8_3:57109773-57109792 | None:intergenic | 20.0% |
| !! | TGAATTTACTATTATACCTA+TGG | + | chr8_3:57109907-57109926 | Msa1297180:intron | 20.0% |
| !!! | TCCAAATTTTAACTACATAA+GGG | - | chr8_3:57110213-57110232 | None:intergenic | 20.0% |
| !!! | TTCCAAATTTTAACTACATA+AGG | - | chr8_3:57110214-57110233 | None:intergenic | 20.0% |
| !! | AACATTAAACTTCTTTATGA+TGG | - | chr8_3:57110509-57110528 | None:intergenic | 20.0% |
| !! | CAAAGATAATATTAAGGAAA+AGG | - | chr8_3:57111108-57111127 | None:intergenic | 20.0% |
| !!! | CTTTTCCTTAATATTATCTT+TGG | + | chr8_3:57111106-57111125 | Msa1297180:intron | 20.0% |
| !! | TCTATAATAAAAATCGTTGT+TGG | - | chr8_3:57111512-57111531 | None:intergenic | 20.0% |
| !! | TAATCTTGAACCTATATAAA+AGG | + | chr8_3:57111871-57111890 | Msa1297180:intron | 20.0% |
| !! | ACAAATACAAAAGTAATACA+AGG | - | chr8_3:57112694-57112713 | None:intergenic | 20.0% |
| ! | ACAAAAAAAGATAAGAGCAA+AGG | + | chr8_3:57107201-57107220 | Msa1297180:CDS | 25.0% |
| ! | TGAAGATGATGATAATATCA+AGG | + | chr8_3:57107560-57107579 | Msa1297180:CDS | 25.0% |
| !!! | TCTACTTCTAGAATAAAGAA+GGG | - | chr8_3:57107592-57107611 | None:intergenic | 25.0% |
| !!! | TTCTACTTCTAGAATAAAGA+AGG | - | chr8_3:57107593-57107612 | None:intergenic | 25.0% |
| ! | TAAAGTCAATGAAAGAAACA+AGG | + | chr8_3:57108021-57108040 | Msa1297180:intron | 25.0% |
| ! | TTTGGAAATAAACTGTCATT+TGG | - | chr8_3:57108097-57108116 | None:intergenic | 25.0% |
| ! | AGTTTATTTCCAAAAGATGA+TGG | + | chr8_3:57108103-57108122 | Msa1297180:intron | 25.0% |
| ! | TCCAAATATAGGAGAAATAT+TGG | - | chr8_3:57108201-57108220 | None:intergenic | 25.0% |
| ! | ACATAAAGTTAATAATAGGG+TGG | - | chr8_3:57108338-57108357 | None:intergenic | 25.0% |
| ! | CAAATTTACAGTTGAAATAG+CGG | - | chr8_3:57108432-57108451 | None:intergenic | 25.0% |
| ! | TATTAAGATAGATCTGTGTT+AGG | + | chr8_3:57108731-57108750 | Msa1297180:intron | 25.0% |
| !! | AGAATTCTCTATCTTTTTGA+TGG | + | chr8_3:57108756-57108775 | Msa1297180:intron | 25.0% |
| !! | CTCATATCTAAAGTTACTAA+AGG | + | chr8_3:57108932-57108951 | Msa1297180:intron | 25.0% |
| ! | AAAGTTAGTCAATCTATTTC+CGG | + | chr8_3:57108965-57108984 | Msa1297180:intron | 25.0% |
| ! | TATCTATACTAGTGAAAAGA+CGG | + | chr8_3:57109016-57109035 | Msa1297180:intron | 25.0% |
| ! | GTCATTGAAATAGATAATCA+TGG | - | chr8_3:57109185-57109204 | None:intergenic | 25.0% |
| ! | ACCAACAACAATCTTTATTA+TGG | + | chr8_3:57109257-57109276 | Msa1297180:intron | 25.0% |
| ! | TCCATAATAAAGATTGTTGT+TGG | - | chr8_3:57109261-57109280 | None:intergenic | 25.0% |
| ! | GATGCATCAAAAAATTTATC+TGG | + | chr8_3:57109418-57109437 | Msa1297180:intron | 25.0% |
| ! | ATCAAAAAATTTATCTGGAG+TGG | + | chr8_3:57109423-57109442 | Msa1297180:intron | 25.0% |
| !!! | TATTTTTTTGGACTGATAGA+TGG | + | chr8_3:57109738-57109757 | Msa1297180:intron | 25.0% |
| ! | GATATATATCACATAAAGGA+GGG | - | chr8_3:57109769-57109788 | None:intergenic | 25.0% |
| ! | TGATATATATCACATAAAGG+AGG | - | chr8_3:57109770-57109789 | None:intergenic | 25.0% |
| !! | ATGTAGTTAAAATTTGGAAC+TGG | + | chr8_3:57110215-57110234 | Msa1297180:intron | 25.0% |
| ! | GTGTAAGTTAATATTTAGAG+TGG | - | chr8_3:57110248-57110267 | None:intergenic | 25.0% |
| !! | AAAGAAGTTGGACAAATTTT+TGG | + | chr8_3:57110763-57110782 | Msa1297180:intron | 25.0% |
| ! | AGATTCTATGTTAGTAGTAA+TGG | + | chr8_3:57110794-57110813 | Msa1297180:intron | 25.0% |
| !! | ATTTCCTTCTCTGAAAATAT+GGG | - | chr8_3:57110910-57110929 | None:intergenic | 25.0% |
| ! | TTTGAACCAAAAAACTAGAA+AGG | - | chr8_3:57111007-57111026 | None:intergenic | 25.0% |
| ! | TGCAACCAAAGATAATATTA+AGG | - | chr8_3:57111114-57111133 | None:intergenic | 25.0% |
| !!! | CCTTTTTTTTTAAACCAAAG+AGG | - | chr8_3:57111151-57111170 | None:intergenic | 25.0% |
| !! | CCTCTTTGGTTTAAAAAAAA+AGG | + | chr8_3:57111148-57111167 | Msa1297180:intron | 25.0% |
| ! | TATATAGACTAGCAAAAAGA+CGG | + | chr8_3:57111290-57111309 | Msa1297180:intron | 25.0% |
| !! | AAAGATAACTTCAACTCTTT+TGG | - | chr8_3:57111803-57111822 | None:intergenic | 25.0% |
| ! | TTCAAGATTACTTCGAAAAA+TGG | - | chr8_3:57111908-57111927 | None:intergenic | 25.0% |
| ! | ACAAAAAAAGATAAGAGCAA+AGG | + | chr8_3:57107201-57107220 | Msa1297180:CDS | 25.0% |
| ! | GTAAATACTCTTCAGATTAT+AGG | + | chr8_3:57112588-57112607 | Msa1297180:intron | 25.0% |
| !!! | ATATTTGTTTTCTCTAGTCA+CGG | + | chr8_3:57112731-57112750 | Msa1297180:intron | 25.0% |
| !! | CTACTTCTAGAATAAAGAAG+GGG | - | chr8_3:57107591-57107610 | None:intergenic | 30.0% |
| ! | TTGACTTTATTTGGTGGTAA+GGG | - | chr8_3:57108010-57108029 | None:intergenic | 30.0% |
| ! | ATTGACTTTATTTGGTGGTA+AGG | - | chr8_3:57108011-57108030 | None:intergenic | 30.0% |
| !! | CTTTCATTGACTTTATTTGG+TGG | - | chr8_3:57108016-57108035 | None:intergenic | 30.0% |
| ATGAAAGAAACAAGGAATCA+AGG | + | chr8_3:57108029-57108048 | Msa1297180:intron | 30.0% | |
| AAACAAGGAATCAAGGTTAT+TGG | + | chr8_3:57108036-57108055 | Msa1297180:intron | 30.0% | |
| ! | AAACTGTCATTTGGTTGATT+TGG | - | chr8_3:57108088-57108107 | None:intergenic | 30.0% |
| !! | AAAGGTATTTGAGATACCAT+AGG | - | chr8_3:57108170-57108189 | None:intergenic | 30.0% |
| GAAATATTGGCAACATTCAA+AGG | - | chr8_3:57108188-57108207 | None:intergenic | 30.0% | |
| GCCAATATTTCTCCTATATT+TGG | + | chr8_3:57108197-57108216 | Msa1297180:intron | 30.0% | |
| CAAGTTCATCATCCAAATAT+AGG | - | chr8_3:57108212-57108231 | None:intergenic | 30.0% | |
| TAATAGGTATCATACTCCTT+GGG | - | chr8_3:57108264-57108283 | None:intergenic | 30.0% | |
| TTAATAGGTATCATACTCCT+TGG | - | chr8_3:57108265-57108284 | None:intergenic | 30.0% | |
| ATTGAAGAGTTCGTCTTAAT+AGG | - | chr8_3:57108280-57108299 | None:intergenic | 30.0% | |
| TAAAGTTAATAATAGGGTGG+TGG | - | chr8_3:57108335-57108354 | None:intergenic | 30.0% | |
| AATCAAGTCACTATGTTTGA+CGG | + | chr8_3:57108359-57108378 | Msa1297180:intron | 30.0% | |
| TCAACTGTAAATTTGTCTCT+AGG | + | chr8_3:57108437-57108456 | Msa1297180:intron | 30.0% | |
| !! | TCTCTAGGATTAGAATGAAT+AGG | + | chr8_3:57108452-57108471 | Msa1297180:intron | 30.0% |
| !! | CTCTAGGATTAGAATGAATA+GGG | + | chr8_3:57108453-57108472 | Msa1297180:intron | 30.0% |
| ! | TCTAGGATTAGAATGAATAG+GGG | + | chr8_3:57108454-57108473 | Msa1297180:intron | 30.0% |
| !! | TATGAGTCATTGATTTACGA+TGG | + | chr8_3:57108552-57108571 | Msa1297180:intron | 30.0% |
| TGTTAATTATACGAATGGCA+GGG | - | chr8_3:57108599-57108618 | None:intergenic | 30.0% | |
| TTGTTAATTATACGAATGGC+AGG | - | chr8_3:57108600-57108619 | None:intergenic | 30.0% | |
| ATCTATACTAGTGAAAAGAC+GGG | + | chr8_3:57109017-57109036 | Msa1297180:intron | 30.0% | |
| AATAAAAAGAGCAGAAAGAC+TGG | - | chr8_3:57109053-57109072 | None:intergenic | 30.0% | |
| AGATCCTTTAGCAAAGATAT+TGG | - | chr8_3:57109393-57109412 | None:intergenic | 30.0% | |
| AGCTTCATTGATCTTGATTA+AGG | - | chr8_3:57109528-57109547 | None:intergenic | 30.0% | |
| TTGTCAATTCAGATGAACAT+TGG | + | chr8_3:57109573-57109592 | Msa1297180:intron | 30.0% | |
| TGTCAATTCAGATGAACATT+GGG | + | chr8_3:57109574-57109593 | Msa1297180:intron | 30.0% | |
| ATCAAATCTCTTCCTCAATT+TGG | + | chr8_3:57109645-57109664 | Msa1297180:intron | 30.0% | |
| GACAACTCTAATTTCTTAGT+TGG | + | chr8_3:57109701-57109720 | Msa1297180:intron | 30.0% | |
| !! | TCTAATTTCTTAGTTGGTGA+TGG | + | chr8_3:57109707-57109726 | Msa1297180:intron | 30.0% |
| ! | GAACGTGCAAATGAAAATTT+TGG | - | chr8_3:57109844-57109863 | None:intergenic | 30.0% |
| ! | ATTTTCATTTGCACGTTCAT+TGG | + | chr8_3:57109846-57109865 | Msa1297180:intron | 30.0% |
| AAAAAGGTAAGCTTCCTTTA+GGG | - | chr8_3:57109984-57110003 | None:intergenic | 30.0% | |
| TAAAAAGGTAAGCTTCCTTT+AGG | - | chr8_3:57109985-57110004 | None:intergenic | 30.0% | |
| ATTATATGCAGAAGCTTCAT+TGG | + | chr8_3:57110011-57110030 | Msa1297180:intron | 30.0% | |
| TTATATGCAGAAGCTTCATT+GGG | + | chr8_3:57110012-57110031 | Msa1297180:intron | 30.0% | |
| AGACATAGATTGTAGATAGA+AGG | - | chr8_3:57110151-57110170 | None:intergenic | 30.0% | |
| AAGGGCAATCAAAAAACAAA+TGG | - | chr8_3:57110195-57110214 | None:intergenic | 30.0% | |
| GCCCTTATGTAGTTAAAATT+TGG | + | chr8_3:57110209-57110228 | Msa1297180:intron | 30.0% | |
| TCAATGACATTGAGGAAATT+TGG | + | chr8_3:57110269-57110288 | Msa1297180:intron | 30.0% | |
| ! | CTTTTAATCCAGTTATTGAG+AGG | - | chr8_3:57110582-57110601 | None:intergenic | 30.0% |
| CTCTCAATAACTGGATTAAA+AGG | + | chr8_3:57110580-57110599 | Msa1297180:intron | 30.0% | |
| CTTTGTATCTCAGAAAATCT+TGG | + | chr8_3:57110678-57110697 | Msa1297180:intron | 30.0% | |
| TATCTCAGAAAATCTTGGTT+TGG | + | chr8_3:57110683-57110702 | Msa1297180:intron | 30.0% | |
| ATTTGTCCAACTTCTTTGAA+AGG | - | chr8_3:57110760-57110779 | None:intergenic | 30.0% | |
| CAAACAATGATATTGTTCCA+TGG | + | chr8_3:57110823-57110842 | Msa1297180:intron | 30.0% | |
| ! | GATTTCCTTCTCTGAAAATA+TGG | - | chr8_3:57110911-57110930 | None:intergenic | 30.0% |
| AAAAAACTAGAAAGGAAGGA+TGG | - | chr8_3:57110999-57111018 | None:intergenic | 30.0% | |
| !!! | ATCCTTCCTTTCTAGTTTTT+TGG | + | chr8_3:57110998-57111017 | Msa1297180:intron | 30.0% |
| AACCAAAAAACTAGAAAGGA+AGG | - | chr8_3:57111003-57111022 | None:intergenic | 30.0% | |
| ATATAGACTAGCAAAAAGAC+GGG | + | chr8_3:57111291-57111310 | Msa1297180:intron | 30.0% | |
| ! | ATAACTTCAACTCTTTTGGA+CGG | - | chr8_3:57111799-57111818 | None:intergenic | 30.0% |
| ! | AATTAGAGGGCCTTTTATAT+AGG | - | chr8_3:57111884-57111903 | None:intergenic | 30.0% |
| TTCGAAAAATGGCAATTAGA+GGG | - | chr8_3:57111897-57111916 | None:intergenic | 30.0% | |
| TGAAGATGATGACAATATCA+AGG | + | chr8_3:57112292-57112311 | Msa1297180:intron | 30.0% | |
| !! | TCTGCTTCTAGAATAAAGAA+GGG | - | chr8_3:57112324-57112343 | None:intergenic | 30.0% |
| !! | TTCTGCTTCTAGAATAAAGA+AGG | - | chr8_3:57112325-57112344 | None:intergenic | 30.0% |
| ! | CTAATTCACTTACACTGTTT+TGG | - | chr8_3:57112520-57112539 | None:intergenic | 30.0% |
| !! | TATTTGTTTTCTCTAGTCAC+GGG | + | chr8_3:57112732-57112751 | Msa1297180:intron | 30.0% |
| CTTGAAATCATCATCACTTG+TGG | - | chr8_3:57107409-57107428 | None:intergenic | 35.0% | |
| ! | CACAAGTGATGATGATTTCA+AGG | + | chr8_3:57107407-57107426 | Msa1297180:CDS | 35.0% |
| ATGATTTCAAGGAACTCGTA+AGG | + | chr8_3:57107418-57107437 | Msa1297180:CDS | 35.0% | |
| TGATTTCAAGGAACTCGTAA+GGG | + | chr8_3:57107419-57107438 | Msa1297180:CDS | 35.0% | |
| AGATGAAAATCGTGTTGAGT+TGG | + | chr8_3:57107461-57107480 | Msa1297180:CDS | 35.0% | |
| GATGAAAATCGTGTTGAGTT+GGG | + | chr8_3:57107462-57107481 | Msa1297180:CDS | 35.0% | |
| AGGATTCGATGAAAGTTCTT+CGG | + | chr8_3:57107487-57107506 | Msa1297180:CDS | 35.0% | |
| ! | GCTTTAAACGTTGACTAAAG+AGG | - | chr8_3:57107876-57107895 | None:intergenic | 35.0% |
| ! | TTTTACTCCATCTTTGACAC+AGG | - | chr8_3:57107975-57107994 | None:intergenic | 35.0% |
| ! | ATCAAGGTTATTGGTGTCTT+TGG | + | chr8_3:57108045-57108064 | Msa1297180:intron | 35.0% |
| !!! | TCGAAAGCATTTTCATTGAC+TGG | - | chr8_3:57108130-57108149 | None:intergenic | 35.0% |
| AGTCAATGAAAATGCTTTCG+AGG | + | chr8_3:57108129-57108148 | Msa1297180:intron | 35.0% | |
| GTAGAAATGCAAAGAACCTA+TGG | + | chr8_3:57108151-57108170 | Msa1297180:intron | 35.0% | |
| AAAATAGTATGGTAGAGTGG+TGG | - | chr8_3:57108305-57108324 | None:intergenic | 35.0% | |
| GAGAAAATAGTATGGTAGAG+TGG | - | chr8_3:57108308-57108327 | None:intergenic | 35.0% | |
| GTGGAATGGAGAAAATAGTA+TGG | - | chr8_3:57108316-57108335 | None:intergenic | 35.0% | |
| !! | TTAATAATAGGGTGGTGGAA+TGG | - | chr8_3:57108330-57108349 | None:intergenic | 35.0% |
| TTGGCCAATATCTTTGCTAA+AGG | + | chr8_3:57109386-57109405 | Msa1297180:intron | 35.0% | |
| AAGTTATGCAGACCTTATGA+AGG | + | chr8_3:57109485-57109504 | Msa1297180:intron | 35.0% | |
| AGTTATGCAGACCTTATGAA+GGG | + | chr8_3:57109486-57109505 | Msa1297180:intron | 35.0% | |
| CAAGATTCCAACACAATTTG+AGG | - | chr8_3:57109556-57109575 | None:intergenic | 35.0% | |
| TTTCACACTACTCCAAATTG+AGG | - | chr8_3:57109660-57109679 | None:intergenic | 35.0% | |
| !!! | GATATAGTCACTGACTTTTG+AGG | - | chr8_3:57109822-57109841 | None:intergenic | 35.0% |
| TTGTCTTGTCTATGATCCAT+AGG | - | chr8_3:57109926-57109945 | None:intergenic | 35.0% | |
| ATAGACAAGACAAGCTTATG+TGG | + | chr8_3:57109933-57109952 | Msa1297180:intron | 35.0% | |
| TTCATTGGGCTTCTACTATT+TGG | + | chr8_3:57110026-57110045 | Msa1297180:intron | 35.0% | |
| ! | CATGCTATCAGAGATTTTGA+AGG | - | chr8_3:57110067-57110086 | None:intergenic | 35.0% |
| CTTCAAAATCTCTGATAGCA+TGG | + | chr8_3:57110065-57110084 | Msa1297180:intron | 35.0% | |
| ACCTACAGATGAAAAGCTTA+TGG | + | chr8_3:57110108-57110127 | Msa1297180:intron | 35.0% | |
| ! | TCCATAAGCTTTTCATCTGT+AGG | - | chr8_3:57110112-57110131 | None:intergenic | 35.0% |
| CTTACACTTCAATGACATTG+AGG | + | chr8_3:57110261-57110280 | Msa1297180:intron | 35.0% | |
| ! | TTGATGATTATCTTGCACTG+AGG | - | chr8_3:57110319-57110338 | None:intergenic | 35.0% |
| CACAGAGAGAATGTTTACAA+TGG | - | chr8_3:57110347-57110366 | None:intergenic | 35.0% | |
| CATTGTAAACATTCTCTCTG+TGG | + | chr8_3:57110345-57110364 | Msa1297180:intron | 35.0% | |
| TAAACATTCTCTCTGTGGTT+TGG | + | chr8_3:57110350-57110369 | Msa1297180:intron | 35.0% | |
| AGAAACTCTGCAAGATTCAA+AGG | + | chr8_3:57110379-57110398 | Msa1297180:intron | 35.0% | |
| GAAACTCTGCAAGATTCAAA+GGG | + | chr8_3:57110380-57110399 | Msa1297180:intron | 35.0% | |
| !! | TCATCTAATGTTGCTTTGTC+AGG | + | chr8_3:57110439-57110458 | Msa1297180:intron | 35.0% |
| TTAATCCAGTTATTGAGAGG+AGG | - | chr8_3:57110579-57110598 | None:intergenic | 35.0% | |
| TGGATTAAAAGGAACACAGA+TGG | + | chr8_3:57110591-57110610 | Msa1297180:intron | 35.0% | |
| ATATTGTTCCATGGCAGTTA+AGG | + | chr8_3:57110832-57110851 | Msa1297180:intron | 35.0% | |
| ! | CTTGCAGGGATTATTTTCTT+GGG | + | chr8_3:57110965-57110984 | Msa1297180:intron | 35.0% |
| AAGGAAACAAACCTACAGTT+AGG | - | chr8_3:57111044-57111063 | None:intergenic | 35.0% | |
| !! | TTGTTTCCTTCTGAGAGTTT+TGG | + | chr8_3:57111054-57111073 | Msa1297180:intron | 35.0% |
| AAAGGAGCAGATACAAAAGA+GGG | - | chr8_3:57111090-57111109 | None:intergenic | 35.0% | |
| AAAAGGAGCAGATACAAAAG+AGG | - | chr8_3:57111091-57111110 | None:intergenic | 35.0% | |
| CTTCGAAAAATGGCAATTAG+AGG | - | chr8_3:57111898-57111917 | None:intergenic | 35.0% | |
| AGGAAAAATCACGAGAACAT+TGG | - | chr8_3:57112037-57112056 | None:intergenic | 35.0% | |
| CTTGAAATCATCATCACTTG+TGG | - | chr8_3:57107409-57107428 | None:intergenic | 35.0% | |
| ! | CACAAGTGATGATGATTTCA+AGG | + | chr8_3:57107407-57107426 | Msa1297180:CDS | 35.0% |
| ATGATTTCAAGGAACTCGTA+AGG | + | chr8_3:57107418-57107437 | Msa1297180:CDS | 35.0% | |
| TGATTTCAAGGAACTCGTAA+GGG | + | chr8_3:57107419-57107438 | Msa1297180:CDS | 35.0% | |
| !! | CTGCTTCTAGAATAAAGAAG+GGG | - | chr8_3:57112323-57112342 | None:intergenic | 35.0% |
| !! | ATTTGTTTTCTCTAGTCACG+GGG | + | chr8_3:57112733-57112752 | Msa1297180:intron | 35.0% |
| ACCATTAAGGTTCCTGGTAA+AGG | + | chr8_3:57107251-57107270 | Msa1297180:CDS | 40.0% | |
| ACCTTTACCAGGAACCTTAA+TGG | - | chr8_3:57107255-57107274 | None:intergenic | 40.0% | |
| AAGGTTCCTGGTAAAGGTAA+AGG | + | chr8_3:57107257-57107276 | Msa1297180:CDS | 40.0% | |
| ACATGTCCTTTACCTTTACC+AGG | - | chr8_3:57107266-57107285 | None:intergenic | 40.0% | |
| GTAAAGGACATGTACGTCAA+TGG | + | chr8_3:57107273-57107292 | Msa1297180:intron | 40.0% | |
| AGGCAAAATCACGAGAACAT+TGG | - | chr8_3:57107305-57107324 | None:intergenic | 40.0% | |
| GGAAAGGAGTAAAATTGCGT+GGG | - | chr8_3:57107354-57107373 | None:intergenic | 40.0% | |
| AGGAAAGGAGTAAAATTGCG+TGG | - | chr8_3:57107355-57107374 | None:intergenic | 40.0% | |
| ! | CGCAATTTTACTCCTTTCCT+AGG | + | chr8_3:57107355-57107374 | Msa1297180:intron | 40.0% |
| !! | AAATCGTGTTGAGTTGGGTA+AGG | + | chr8_3:57107467-57107486 | Msa1297180:CDS | 40.0% |
| ! | TACTCTTGAGAGCATGTTAG+TGG | + | chr8_3:57107923-57107942 | Msa1297180:intron | 40.0% |
| ! | ACTCTTGAGAGCATGTTAGT+GGG | + | chr8_3:57107924-57107943 | Msa1297180:intron | 40.0% |
| ACATACTCCTGTGTCAAAGA+TGG | + | chr8_3:57107965-57107984 | Msa1297180:intron | 40.0% | |
| ! | TTGACTGGACCATCATCTTT+TGG | - | chr8_3:57108115-57108134 | None:intergenic | 40.0% |
| ! | CTCAAAGAAAGCTTGTTCAG+TGG | + | chr8_3:57109454-57109473 | Msa1297180:intron | 40.0% |
| CTGCTAACCTCAAATTGTGT+TGG | + | chr8_3:57109546-57109565 | Msa1297180:intron | 40.0% | |
| ! | TTTTGGACTGATAGATGGTG+TGG | + | chr8_3:57109743-57109762 | Msa1297180:intron | 40.0% |
| !! | GCTATCAGAGATTTTGAAGG+TGG | - | chr8_3:57110064-57110083 | None:intergenic | 40.0% |
| CAAAATCTCTGATAGCATGG+AGG | + | chr8_3:57110068-57110087 | Msa1297180:intron | 40.0% | |
| GATGAAAAGCTTATGGAGAG+AGG | + | chr8_3:57110115-57110134 | Msa1297180:intron | 40.0% | |
| GGCACATTTGTGATAGAAGA+TGG | + | chr8_3:57110290-57110309 | Msa1297180:intron | 40.0% | |
| ACATAACTTCCTTGATCCGA+GGG | - | chr8_3:57110551-57110570 | None:intergenic | 40.0% | |
| TCATCAATGTCTTCTGCTTG+TGG | + | chr8_3:57110621-57110640 | Msa1297180:intron | 40.0% | |
| ! | TCTTTGAAAGGCTGTCTCTA+TGG | - | chr8_3:57110748-57110767 | None:intergenic | 40.0% |
| AGACAGCCTTTCAAAGAAGT+TGG | + | chr8_3:57110751-57110770 | Msa1297180:intron | 40.0% | |
| AATCAAGAGCTTCATGCAGT+TGG | - | chr8_3:57110868-57110887 | None:intergenic | 40.0% | |
| ! | GTCTCCCATATTTTCAGAGA+AGG | + | chr8_3:57110903-57110922 | Msa1297180:intron | 40.0% |
| ! | GTTGATTCCCTTGCAAACTT+TGG | + | chr8_3:57110936-57110955 | Msa1297180:intron | 40.0% |
| CCAAGAAAATAATCCCTGCA+AGG | - | chr8_3:57110967-57110986 | None:intergenic | 40.0% | |
| ! | CCTTGCAGGGATTATTTTCT+TGG | + | chr8_3:57110964-57110983 | Msa1297180:intron | 40.0% |
| AGTTAGACATGCCTAACTGT+AGG | + | chr8_3:57111030-57111049 | Msa1297180:intron | 40.0% | |
| CTATAGCCAAAACTCTCAGA+AGG | - | chr8_3:57111063-57111082 | None:intergenic | 40.0% | |
| AAGGAGCAGATACAAAAGAG+GGG | - | chr8_3:57111089-57111108 | None:intergenic | 40.0% | |
| GCTCTTTGATGTAACCTCTT+TGG | + | chr8_3:57111134-57111153 | Msa1297180:intron | 40.0% | |
| ACCATTAAGGTTCCTGGTAA+AGG | + | chr8_3:57107251-57107270 | Msa1297180:CDS | 40.0% | |
| ACCTTTACCAGGAACCTTAA+TGG | - | chr8_3:57107255-57107274 | None:intergenic | 40.0% | |
| AAGGTTCCTGGTAAAGGTAA+AGG | + | chr8_3:57107257-57107276 | Msa1297180:CDS | 40.0% | |
| ACATGTCCTTTACCTTTACC+AGG | - | chr8_3:57107266-57107285 | None:intergenic | 40.0% | |
| GTAAAGGACATGTACGTCAA+TGG | + | chr8_3:57107273-57107292 | Msa1297180:intron | 40.0% | |
| TATGTAGATCCTGCAACCAT+GGG | + | chr8_3:57112056-57112075 | Msa1297180:intron | 40.0% | |
| CATATTTGCTCTACTGCGAA+TGG | - | chr8_3:57112354-57112373 | None:intergenic | 40.0% | |
| TTCAGATTATAGGTGAAGCG+TGG | + | chr8_3:57112598-57112617 | Msa1297180:intron | 40.0% | |
| TCAGATTATAGGTGAAGCGT+GGG | + | chr8_3:57112599-57112618 | Msa1297180:intron | 40.0% | |
| CAAGCTCATCAGGTACATGA+AGG | + | chr8_3:57107227-57107246 | Msa1297180:CDS | 45.0% | |
| !! | GGTACATGAAGGCACCATTA+AGG | + | chr8_3:57107238-57107257 | Msa1297180:CDS | 45.0% |
| CATGGTTGCATGGTCTACAT+AGG | - | chr8_3:57107325-57107344 | None:intergenic | 45.0% | |
| CTATGTAGACCATGCAACCA+TGG | + | chr8_3:57107323-57107342 | Msa1297180:intron | 45.0% | |
| AAATTGCGTGGGACATACCA+TGG | - | chr8_3:57107343-57107362 | None:intergenic | 45.0% | |
| AACACTGAAGCTCCTAGGAA+AGG | - | chr8_3:57107370-57107389 | None:intergenic | 45.0% | |
| GAGTTAACACTGAAGCTCCT+AGG | - | chr8_3:57107375-57107394 | None:intergenic | 45.0% | |
| TGGAAGGATTGAAGAAGACG+AGG | + | chr8_3:57107527-57107546 | Msa1297180:CDS | 45.0% | |
| ! | CTCTTGAGAGCATGTTAGTG+GGG | + | chr8_3:57107925-57107944 | Msa1297180:intron | 45.0% |
| ! | CACAGGAGTATGTGTTTGCA+AGG | - | chr8_3:57107958-57107977 | None:intergenic | 45.0% |
| GACGAGTTCTATTCAACCCA+AGG | + | chr8_3:57108245-57108264 | Msa1297180:intron | 45.0% | |
| ! | GGGTGAGTTCTTTGGATTAG+TGG | - | chr8_3:57108579-57108598 | None:intergenic | 45.0% |
| ! | AGAAAGCTTGTTCAGTGGCA+TGG | + | chr8_3:57109459-57109478 | Msa1297180:intron | 45.0% |
| AGACCTTATGAAGGGAGTCT+AGG | + | chr8_3:57109494-57109513 | Msa1297180:intron | 45.0% | |
| AGACCTAGACTCCCTTCATA+AGG | - | chr8_3:57109500-57109519 | None:intergenic | 45.0% | |
| TCAACAGTCTGTCTGAGAGA+AGG | - | chr8_3:57109890-57109909 | None:intergenic | 45.0% | |
| TAGGGTAATGTCACCAGTCT+TGG | - | chr8_3:57109966-57109985 | None:intergenic | 45.0% | |
| GACTGGTGACATTACCCTAA+AGG | + | chr8_3:57109967-57109986 | Msa1297180:intron | 45.0% | |
| GAAGTCAGTCATAGAGGAGT+TGG | - | chr8_3:57110485-57110504 | None:intergenic | 45.0% | |
| GATGGTGAAGTCAGTCATAG+AGG | - | chr8_3:57110491-57110510 | None:intergenic | 45.0% | |
| CATAACTTCCTTGATCCGAG+GGG | - | chr8_3:57110550-57110569 | None:intergenic | 45.0% | |
| CACATAACTTCCTTGATCCG+AGG | - | chr8_3:57110552-57110571 | None:intergenic | 45.0% | |
| CTCGGATCAAGGAAGTTATG+TGG | + | chr8_3:57110550-57110569 | Msa1297180:intron | 45.0% | |
| GGTATCCTCCTCTCAATAAC+TGG | + | chr8_3:57110571-57110590 | Msa1297180:intron | 45.0% | |
| ! | GCATTTTATGCTGAGCTGCT+TGG | + | chr8_3:57110711-57110730 | Msa1297180:intron | 45.0% |
| CATCTGTTCCTTAACTGCCA+TGG | - | chr8_3:57110843-57110862 | None:intergenic | 45.0% | |
| CATGGCAGTTAAGGAACAGA+TGG | + | chr8_3:57110841-57110860 | Msa1297180:intron | 45.0% | |
| TTCCCTTGCAAACTTTGGCT+TGG | + | chr8_3:57110941-57110960 | Msa1297180:intron | 45.0% | |
| AGGAGCAGATACAAAAGAGG+GGG | - | chr8_3:57111088-57111107 | None:intergenic | 45.0% | |
| CAAGCTCAGTAGGTACATGA+AGG | + | chr8_3:57111959-57111978 | Msa1297180:intron | 45.0% | |
| !! | GGTACATGAAGGCACCATTA+AGG | + | chr8_3:57107238-57107257 | Msa1297180:CDS | 45.0% |
| CATGGTTGCAGGATCTACAT+AGG | - | chr8_3:57112057-57112076 | None:intergenic | 45.0% | |
| CTATGTAGATCCTGCAACCA+TGG | + | chr8_3:57112055-57112074 | Msa1297180:intron | 45.0% | |
| GGAAAGGAGTAAAGTTGCGT+AGG | - | chr8_3:57112086-57112105 | None:intergenic | 45.0% | |
| CGCAACTTTACTCCTTTCCT+AGG | + | chr8_3:57112087-57112106 | Msa1297180:CDS | 45.0% | |
| AACACTGAAGCTCCTAGGAA+AGG | - | chr8_3:57107370-57107389 | None:intergenic | 45.0% | |
| GAGTTAACACTGAAGCTCCT+AGG | - | chr8_3:57107375-57107394 | None:intergenic | 45.0% | |
| !!! | TTATTTTTTTGTTATATTAT+TGG | - | chr8_3:57109209-57109228 | None:intergenic | 5.0% |
| GCAAAGGAAGCAAGCTCATC+AGG | + | chr8_3:57107217-57107236 | Msa1297180:CDS | 50.0% | |
| !! | GAAGGCACCATTAAGGTTCC+TGG | + | chr8_3:57107245-57107264 | Msa1297180:CDS | 50.0% |
| TGGGACATACCATGGTTGCA+TGG | - | chr8_3:57107335-57107354 | None:intergenic | 50.0% | |
| GTTCTTCGGAGTCACAGTGT+TGG | + | chr8_3:57107501-57107520 | Msa1297180:CDS | 50.0% | |
| !! | GTCACAGTGTTGGCATTGGA+AGG | + | chr8_3:57107511-57107530 | Msa1297180:CDS | 50.0% |
| GAATGGCAGGGTGAGTTCTT+TGG | - | chr8_3:57108587-57108606 | None:intergenic | 50.0% | |
| !! | GACAGCTAGCTCTAATACGC+CGG | - | chr8_3:57108987-57109006 | None:intergenic | 50.0% |
| ATGTGGTGTGAGTCCAAGAC+TGG | + | chr8_3:57109950-57109969 | Msa1297180:intron | 50.0% | |
| AGAGGAGTTGGAGGTAGCTT+TGG | - | chr8_3:57110473-57110492 | None:intergenic | 50.0% | |
| GTCAGTCATAGAGGAGTTGG+AGG | - | chr8_3:57110482-57110501 | None:intergenic | 50.0% | |
| !! | TGAGCTGCTTGGTGCTATGA+GGG | + | chr8_3:57110722-57110741 | Msa1297180:intron | 50.0% |
| GGCCAAGCCAAAGTTTGCAA+GGG | - | chr8_3:57110946-57110965 | None:intergenic | 50.0% | |
| AGGCCAAGCCAAAGTTTGCA+AGG | - | chr8_3:57110947-57110966 | None:intergenic | 50.0% | |
| !! | AAACTTTGGCTTGGCCTTGC+AGG | + | chr8_3:57110950-57110969 | Msa1297180:intron | 50.0% |
| !! | AACTTTGGCTTGGCCTTGCA+GGG | + | chr8_3:57110951-57110970 | Msa1297180:intron | 50.0% |
| GGAGCAGATACAAAAGAGGG+GGG | - | chr8_3:57111087-57111106 | None:intergenic | 50.0% | |
| GCAAAGGAAGCAAGCTCAGT+AGG | + | chr8_3:57111949-57111968 | Msa1297180:intron | 50.0% | |
| !! | GAAGGCACCATTAAGGTTCC+TGG | + | chr8_3:57107245-57107264 | Msa1297180:CDS | 50.0% |
| AAGTTGCGTAGGACATCCCA+TGG | - | chr8_3:57112075-57112094 | None:intergenic | 50.0% | |
| !! | CGAAAGCGATGAAAGTGCCT+CGG | + | chr8_3:57112219-57112238 | Msa1297180:CDS | 50.0% |
| ! | GTCGCAGTGTTGGAATTGGA+AGG | + | chr8_3:57112243-57112262 | Msa1297180:CDS | 50.0% |
| !! | CGGAGTCACAGTGTTGGCAT+TGG | + | chr8_3:57107507-57107526 | Msa1297180:CDS | 55.0% |
| !! | CTGAGCTGCTTGGTGCTATG+AGG | + | chr8_3:57110721-57110740 | Msa1297180:intron | 55.0% |
| GTAGGACATCCCATGGTTGC+AGG | - | chr8_3:57112068-57112087 | None:intergenic | 55.0% | |
| TCGTAAGGGCTGCGTCACTT+AGG | + | chr8_3:57112165-57112184 | Msa1297180:CDS | 55.0% | |
| ATTCCAACACTGCGACTCCG+AGG | - | chr8_3:57112239-57112258 | None:intergenic | 55.0% | |
| ! | CGGAGTCGCAGTGTTGGAAT+TGG | + | chr8_3:57112239-57112258 | Msa1297180:CDS | 55.0% |
| TCGTAAGGGCTGCGTCGCTT+AGG | + | chr8_3:57107433-57107452 | Msa1297180:CDS | 60.0% | |
| ATACACCCCCTAGAGCCCCT+CGG | + | chr8_3:57110532-57110551 | Msa1297180:intron | 60.0% | |
| !! | TTGATCCGAGGGGCTCTAGG+GGG | - | chr8_3:57110540-57110559 | None:intergenic | 60.0% |
| ! | CTTGATCCGAGGGGCTCTAG+GGG | - | chr8_3:57110541-57110560 | None:intergenic | 60.0% |
| CCTTGATCCGAGGGGCTCTA+GGG | - | chr8_3:57110542-57110561 | None:intergenic | 60.0% | |
| TCCTTGATCCGAGGGGCTCT+AGG | - | chr8_3:57110543-57110562 | None:intergenic | 60.0% | |
| CCCTAGAGCCCCTCGGATCA+AGG | + | chr8_3:57110539-57110558 | Msa1297180:intron | 65.0% | |
| GTGCCTCGGAGTCGCAGTGT+TGG | + | chr8_3:57112233-57112252 | Msa1297180:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 57107198 | 57112761 | 57107198 | ID=Msa1297180;Name=Msa1297180 |
| chr8_3 | mRNA | 57107198 | 57112761 | 57107198 | ID=Msa1297180-mRNA-1;Parent=Msa1297180;Name=Msa1297180-mRNA-1;_AED=0.25;_eAED=0.27;_QI=0|0|0|1|0|0.25|4|0|180 |
| chr8_3 | exon | 57107198 | 57107283 | 57107198 | ID=Msa1297180-mRNA-1:exon:16403;Parent=Msa1297180-mRNA-1 |
| chr8_3 | exon | 57107386 | 57107606 | 57107386 | ID=Msa1297180-mRNA-1:exon:16404;Parent=Msa1297180-mRNA-1 |
| chr8_3 | exon | 57112063 | 57112284 | 57112063 | ID=Msa1297180-mRNA-1:exon:16405;Parent=Msa1297180-mRNA-1 |
| chr8_3 | exon | 57112748 | 57112761 | 57112748 | ID=Msa1297180-mRNA-1:exon:16406;Parent=Msa1297180-mRNA-1 |
| chr8_3 | CDS | 57107198 | 57107283 | 57107198 | ID=Msa1297180-mRNA-1:cds;Parent=Msa1297180-mRNA-1 |
| chr8_3 | CDS | 57107386 | 57107606 | 57107386 | ID=Msa1297180-mRNA-1:cds;Parent=Msa1297180-mRNA-1 |
| chr8_3 | CDS | 57112063 | 57112284 | 57112063 | ID=Msa1297180-mRNA-1:cds;Parent=Msa1297180-mRNA-1 |
| chr8_3 | CDS | 57112748 | 57112761 | 57112748 | ID=Msa1297180-mRNA-1:cds;Parent=Msa1297180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
