AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1306070

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1306070 MtrunA17_Chr8g0349341 89.394 330 35 0 2 331 36 365 0.0 609
Msa1306070 MtrunA17_Chr8g0349321 79.394 330 68 0 2 331 36 365 0.0 551
Msa1306070 MtrunA17_Chr8g0349331 74.390 328 54 3 4 331 36 333 2.92e-175 489
Msa1306070 MtrunA17_Chr8g0349301 84.507 284 43 1 2 285 36 318 3.19e-174 486
Msa1306070 MtrunA17_Chr8g0344931 57.057 333 127 4 4 330 38 360 1.73e-126 366
Msa1306070 MtrunA17_Chr8g0344941 51.940 335 152 4 4 330 42 375 3.51e-119 348
Msa1306070 MtrunA17_Chr2g0301641 50.450 333 157 4 4 329 44 375 7.90e-111 328
Msa1306070 MtrunA17_Chr8g0341001 34.268 321 186 10 4 309 33 343 2.06e-55 184
Msa1306070 MtrunA17_Chr5g0444401 34.203 345 200 9 1 328 25 359 1.13e-54 182
Msa1306070 MtrunA17_Chr1g0189931 34.320 338 200 8 5 329 34 362 3.38e-53 179
Msa1306070 MtrunA17_Chr3g0077571 31.845 336 210 5 4 330 31 356 1.60e-52 176
Msa1306070 MtrunA17_Chr4g0046151 35.000 320 181 10 4 304 37 348 2.53e-52 176
Msa1306070 MtrunA17_Chr3g0105401 32.087 321 199 9 4 312 29 342 6.95e-52 175
Msa1306070 MtrunA17_Chr7g0275011 32.840 338 205 8 5 329 36 364 9.18e-51 172
Msa1306070 MtrunA17_Chr3g0120861 32.710 321 196 9 4 312 39 351 3.82e-50 171
Msa1306070 MtrunA17_Chr2g0294301 30.882 340 212 8 5 330 37 367 9.78e-50 169
Msa1306070 MtrunA17_Chr7g0274991 31.672 341 205 8 5 329 35 363 1.77e-49 169
Msa1306070 MtrunA17_Chr5g0438631 33.438 320 196 7 4 312 29 342 1.82e-49 168
Msa1306070 MtrunA17_Chr3g0086641 32.448 339 207 10 5 330 40 369 3.89e-49 168
Msa1306070 MtrunA17_Chr1g0189901 32.544 338 206 8 5 329 33 361 4.63e-49 168
Msa1306070 MtrunA17_Chr7g0275021 31.953 338 208 8 5 329 36 364 6.40e-49 167
Msa1306070 MtrunA17_Chr2g0330781 31.481 324 197 10 4 312 32 345 9.80e-49 167
Msa1306070 MtrunA17_Chr3g0099231 30.994 342 211 7 4 330 29 360 9.98e-49 167
Msa1306070 MtrunA17_Chr1g0189891 33.918 342 191 12 5 329 31 354 2.06e-48 166
Msa1306070 MtrunA17_Chr4g0068441 30.499 341 214 9 5 331 37 368 2.55e-48 166
Msa1306070 MtrunA17_Chr1g0156901 32.803 314 192 9 4 306 51 356 2.56e-48 166
Msa1306070 MtrunA17_Chr2g0320671 30.000 330 211 8 4 321 31 352 7.00e-48 164
Msa1306070 MtrunA17_Chr3g0099161 31.287 342 209 7 4 329 93 424 8.88e-48 166
Msa1306070 MtrunA17_Chr5g0405831 32.399 321 198 8 4 312 44 357 2.60e-47 163
Msa1306070 MtrunA17_Chr1g0156891 33.546 313 186 9 4 303 44 347 2.91e-47 163
Msa1306070 MtrunA17_Chr2g0283191 32.812 320 188 9 5 304 40 352 3.20e-47 163
Msa1306070 MtrunA17_Chr1g0182811 32.647 340 203 10 5 328 35 364 3.31e-47 163
Msa1306070 MtrunA17_Chr8g0371491 31.366 322 199 9 4 312 37 349 3.40e-47 162
Msa1306070 MtrunA17_Chr4g0008851 31.471 340 209 8 5 329 34 364 7.06e-47 162
Msa1306070 MtrunA17_Chr8g0370981 31.217 378 201 10 4 328 45 416 8.50e-47 163
Msa1306070 MtrunA17_Chr5g0405821 30.488 328 203 11 2 313 41 359 1.49e-46 161
Msa1306070 MtrunA17_Chr7g0275001 31.065 338 212 7 5 329 27 356 4.70e-46 160
Msa1306070 MtrunA17_Chr5g0432101 31.804 327 193 9 4 312 34 348 5.49e-46 160
Msa1306070 MtrunA17_Chr1g0156911 31.962 316 196 9 4 308 38 345 5.59e-46 159
Msa1306070 MtrunA17_Chr4g0027521 30.599 317 205 6 4 309 28 340 7.66e-46 159
Msa1306070 MtrunA17_Chr5g0438621 32.710 321 196 9 4 312 31 343 8.33e-46 159
Msa1306070 MtrunA17_Chr2g0294311 29.799 349 214 10 4 330 33 372 1.16e-45 159
Msa1306070 MtrunA17_Chr1g0156921 33.333 318 191 10 4 308 43 352 2.58e-45 158
Msa1306070 MtrunA17_Chr8g0380041 30.650 323 203 8 5 315 33 346 3.76e-45 157
Msa1306070 MtrunA17_Chr3g0092131 30.189 318 200 7 5 309 25 333 5.06e-45 157
Msa1306070 MtrunA17_Chr5g0438641 30.841 321 202 9 4 312 33 345 5.26e-45 157
Msa1306070 MtrunA17_Chr1g0156931 32.803 314 191 10 4 306 42 346 9.78e-45 156
Msa1306070 MtrunA17_Chr4g0060811 29.874 318 201 7 5 309 29 337 1.04e-44 156
Msa1306070 MtrunA17_Chr8g0374101 29.446 343 215 10 5 328 39 373 2.16e-44 155
Msa1306070 MtrunA17_Chr3g0099151 33.041 342 202 9 4 328 88 419 3.00e-44 156
Msa1306070 MtrunA17_Chr2g0285061 29.909 331 211 8 5 323 34 355 2.24e-43 153
Msa1306070 MtrunA17_Chr3g0077581 30.792 341 208 10 5 328 38 367 2.27e-43 153
Msa1306070 MtrunA17_Chr6g0457921 29.204 339 217 7 5 329 31 360 2.94e-43 152
Msa1306070 MtrunA17_Chr7g0215961 30.448 335 204 9 5 329 35 350 3.34e-43 152
Msa1306070 MtrunA17_Chr5g0396511 29.080 337 218 10 5 328 48 376 3.46e-43 153
Msa1306070 MtrunA17_Chr3g0131321 30.904 343 214 7 4 331 35 369 9.96e-43 152
Msa1306070 MtrunA17_Chr5g0434621 29.969 327 203 10 2 314 24 338 3.43e-42 149
Msa1306070 MtrunA17_Chr4g0017431 27.353 340 225 7 4 330 32 362 5.04e-42 149
Msa1306070 MtrunA17_Chr8g0371481 29.630 324 199 10 4 310 42 353 1.07e-41 148
Msa1306070 MtrunA17_Chr2g0284951 33.138 341 196 12 4 331 34 355 1.43e-41 148
Msa1306070 MtrunA17_Chr3g0142921 30.990 313 194 9 4 303 37 340 1.56e-41 148
Msa1306070 MtrunA17_Chr3g0085231 31.672 341 192 10 4 328 32 347 5.30e-41 146
Msa1306070 MtrunA17_Chr1g0157001 29.032 341 213 11 8 328 41 372 3.17e-40 145
Msa1306070 MtrunA17_Chr8g0371471 29.721 323 199 10 4 310 42 352 1.14e-39 143
Msa1306070 MtrunA17_Chr8g0380031 32.716 324 187 10 4 315 85 389 2.49e-39 143
Msa1306070 MtrunA17_Chr8g0370951 29.310 348 213 12 4 330 32 367 5.84e-39 141
Msa1306070 MtrunA17_Chr3g0142941 32.803 314 192 10 4 306 48 353 1.86e-38 140
Msa1306070 MtrunA17_Chr7g0275291 28.739 341 208 9 4 318 34 365 2.57e-38 140
Msa1306070 MtrunA17_Chr1g0160031 30.838 334 204 9 4 315 40 368 1.26e-37 138
Msa1306070 MtrunA17_Chr5g0420811 30.120 332 210 11 4 328 34 350 1.59e-37 137
Msa1306070 MtrunA17_Chr1g0159981 30.699 329 199 9 4 308 47 370 3.22e-37 137
Msa1306070 MtrunA17_Chr1g0159971 31.672 341 194 11 4 315 48 378 5.92e-37 136
Msa1306070 MtrunA17_Chr3g0085881 32.174 345 190 12 4 330 34 352 8.05e-37 135
Msa1306070 MtrunA17_Chr2g0285001 29.360 344 211 11 4 331 34 361 1.52e-36 135
Msa1306070 MtrunA17_Chr1g0160011 30.581 327 200 9 4 308 41 362 1.77e-36 135
Msa1306070 MtrunA17_Chr5g0437421 26.480 321 213 8 4 308 33 346 1.79e-36 134
Msa1306070 MtrunA17_Chr2g0283501 29.674 337 212 11 4 319 32 364 5.35e-36 133
Msa1306070 MtrunA17_Chr2g0284991 30.994 342 207 12 4 331 34 360 8.68e-36 133
Msa1306070 MtrunA17_Chr2g0283531 30.473 338 207 11 4 319 32 363 1.02e-35 132
Msa1306070 MtrunA17_Chr2g0283481 30.747 348 211 12 4 328 48 388 1.81e-35 132
Msa1306070 MtrunA17_Chr1g0178931 29.618 314 195 11 4 308 38 334 5.14e-35 130
Msa1306070 MtrunA17_Chr1g0159991 30.321 343 208 10 4 322 37 372 6.10e-35 131
Msa1306070 MtrunA17_Chr4g0057991 27.190 331 220 8 4 318 40 365 6.83e-35 130
Msa1306070 MtrunA17_Chr8g0381581 29.240 342 204 10 4 315 41 374 1.22e-34 130
Msa1306070 MtrunA17_Chr7g0254461 29.446 343 209 9 4 318 44 381 1.65e-34 130
Msa1306070 MtrunA17_Chr2g0283511 30.499 341 209 11 8 325 36 371 7.16e-34 128
Msa1306070 MtrunA17_Chr7g0266061 31.661 319 183 13 4 308 43 340 1.76e-33 126
Msa1306070 MtrunA17_Chr8g0347751 28.571 343 210 9 4 318 37 372 2.47e-33 127
Msa1306070 MtrunA17_Chr8g0370961 30.085 236 154 4 97 328 14 242 3.25e-33 123
Msa1306070 MtrunA17_Chr7g0226911 28.324 346 206 9 4 316 36 372 6.39e-33 125
Msa1306070 MtrunA17_Chr7g0226931 25.779 353 217 6 4 316 39 386 7.88e-33 125
Msa1306070 MtrunA17_Chr6g0450701 28.659 328 206 8 4 310 40 360 9.91e-33 125
Msa1306070 MtrunA17_Chr3g0104821 28.818 347 211 13 4 322 45 383 3.18e-32 124
Msa1306070 MtrunA17_Chr2g0284921 29.565 345 206 10 4 330 35 360 3.21e-32 123
Msa1306070 MtrunA17_Chr7g0271551 29.688 320 200 10 4 309 37 345 5.81e-32 122
Msa1306070 MtrunA17_Chr2g0317261 29.326 341 202 13 4 322 31 354 5.98e-32 122
Msa1306070 MtrunA17_Chr2g0284941 30.117 342 189 13 4 331 34 339 8.24e-32 122
Msa1306070 MtrunA17_Chr1g0198351 29.073 313 193 9 2 304 42 335 1.81e-31 121
Msa1306070 MtrunA17_Chr2g0317271 29.326 341 202 13 4 322 31 354 1.92e-31 121
Msa1306070 MtrunA17_Chr6g0450711 28.783 337 206 9 4 316 123 449 2.95e-31 122
Msa1306070 MtrunA17_Chr0c01g0489581 29.032 341 203 13 4 322 31 354 1.40e-30 119
Msa1306070 MtrunA17_Chr1g0178941 29.721 323 191 14 4 308 41 345 1.65e-30 118
Msa1306070 MtrunA17_Chr1g0198381 29.573 328 203 11 2 319 1 310 3.99e-30 116
Msa1306070 MtrunA17_Chr0c01g0489571 29.032 341 203 13 4 322 31 354 4.13e-30 117
Msa1306070 MtrunA17_Chr7g0273101 28.902 346 204 14 4 318 30 364 8.88e-30 117
Msa1306070 MtrunA17_Chr1g0160101 27.628 333 205 8 4 308 43 367 2.52e-29 115
Msa1306070 MtrunA17_Chr8g0352901 28.824 340 207 10 4 316 29 360 4.24e-29 115
Msa1306070 MtrunA17_Chr6g0450731 28.743 334 197 12 4 315 34 348 6.16e-29 114
Msa1306070 MtrunA17_Chr7g0226941 28.402 338 210 8 4 315 34 365 6.75e-29 114
Msa1306070 MtrunA17_Chr1g0191461 28.863 343 211 11 4 320 32 367 7.86e-29 114
Msa1306070 MtrunA17_Chr3g0112821 28.701 331 207 11 4 315 31 351 8.44e-29 114
Msa1306070 MtrunA17_Chr2g0301581 28.228 333 197 11 4 315 35 346 1.97e-28 113
Msa1306070 MtrunA17_Chr6g0450721 29.217 332 198 10 4 316 34 347 1.97e-28 113
Msa1306070 MtrunA17_Chr4g0027571 30.986 213 134 5 103 308 3 209 9.27e-28 108
Msa1306070 MtrunA17_Chr1g0198391 27.378 347 195 12 2 314 32 355 1.02e-27 111
Msa1306070 MtrunA17_Chr3g0096551 28.161 348 206 12 4 316 30 368 2.44e-27 110
Msa1306070 MtrunA17_Chr2g0301541 27.628 333 199 11 4 315 35 346 8.49e-27 108
Msa1306070 MtrunA17_Chr3g0112691 28.060 335 209 11 4 316 31 355 9.90e-27 108
Msa1306070 MtrunA17_Chr3g0093031 28.571 336 206 13 4 315 31 356 2.32e-26 107
Msa1306070 MtrunA17_Chr6g0455661 26.400 250 165 6 89 328 229 469 5.57e-23 99.0
Msa1306070 MtrunA17_Chr6g0455661 47.368 95 48 1 4 98 32 124 5.27e-19 87.4
Msa1306070 MtrunA17_Chr6g0459921 26.230 244 161 6 95 328 124 358 1.38e-21 94.0
Msa1306070 MtrunA17_Chr8g0339251 27.597 308 192 10 4 293 29 323 3.22e-21 92.4
Msa1306070 MtrunA17_Chr7g0229581 31.579 152 97 3 169 319 8 153 2.65e-20 86.3
Msa1306070 MtrunA17_Chr7g0229591 38.462 143 81 4 4 141 31 171 7.90e-20 86.3
Msa1306070 MtrunA17_Chr2g0301591 27.413 259 169 6 4 253 35 283 1.93e-18 84.0
Msa1306070 MtrunA17_Chr4g0018571 29.452 146 98 2 163 308 25 165 4.56e-18 80.5
Msa1306070 MtrunA17_Chr2g0283541 25.994 327 162 9 4 319 32 289 1.19e-17 82.0
Msa1306070 MtrunA17_Chr1g0198401 24.632 272 179 9 56 315 8 265 1.20e-16 78.6
Msa1306070 MtrunA17_Chr6g0469521 30.882 136 89 2 159 294 22 152 2.35e-16 75.1
Msa1306070 MtrunA17_Chr5g0440501 22.222 252 171 8 92 328 7 248 4.34e-16 76.6
Msa1306070 MtrunA17_Chr1g0189921 40.000 120 63 4 5 117 33 150 1.79e-14 70.1
Msa1306070 MtrunA17_Chr3g0104801 37.190 121 64 4 4 114 45 163 4.05e-14 69.7
Msa1306070 MtrunA17_Chr1g0189911 28.788 132 89 1 198 329 18 144 6.43e-14 68.6
Msa1306070 MtrunA17_Chr4g0027561 44.318 88 43 3 4 87 31 116 9.63e-14 67.8
Msa1306070 MtrunA17_Chr6g0469511 39.474 114 62 4 4 112 31 142 2.33e-13 66.6
Msa1306070 MtrunA17_Chr2g0301551 23.944 284 178 10 53 315 36 302 2.48e-13 69.7
Msa1306070 MtrunA17_Chr2g0301571 25.000 284 175 11 53 315 36 302 4.00e-13 68.9
Msa1306070 MtrunA17_Chr1g0178961 23.529 187 135 4 123 304 18 201 7.52e-13 67.0
Msa1306070 MtrunA17_Chr2g0321991 41.304 92 48 3 4 91 34 123 2.08e-12 63.5
Msa1306070 MtrunA17_Chr7g0228261 34.884 86 51 1 244 329 10 90 2.65e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1306070 AT1G53920.1 51.786 336 152 5 4 330 49 383 1.99e-120 352
Msa1306070 AT5G40990.1 52.679 336 149 5 4 330 38 372 6.10e-117 343
Msa1306070 AT1G53940.2 49.704 338 156 6 4 330 40 374 6.46e-111 327
Msa1306070 AT3G14225.2 46.726 336 169 5 4 330 38 372 4.43e-105 312
Msa1306070 AT3G14225.1 46.471 340 168 6 4 330 38 376 3.56e-104 310
Msa1306070 AT1G53990.1 47.619 336 159 6 4 330 36 363 7.57e-101 301
Msa1306070 AT1G53940.1 50.190 263 118 5 4 256 40 299 2.93e-79 244
Msa1306070 AT5G15720.1 34.513 339 200 8 4 328 31 361 5.99e-58 191
Msa1306070 AT5G45960.1 37.778 315 172 10 4 302 48 354 7.38e-58 191
Msa1306070 AT1G71120.1 30.861 337 208 8 4 328 32 355 1.55e-55 185
Msa1306070 AT5G41890.1 34.195 348 197 12 5 328 33 372 6.13e-54 181
Msa1306070 AT5G45950.1 33.968 315 186 10 4 308 41 343 1.28e-53 180
Msa1306070 AT4G26790.1 35.826 321 180 10 4 309 30 339 1.69e-51 174
Msa1306070 AT4G26790.2 35.826 321 180 10 4 309 30 339 1.69e-51 174
Msa1306070 AT2G40250.1 32.817 323 195 9 4 311 37 352 5.38e-51 173
Msa1306070 AT1G54030.1 31.118 331 201 9 4 329 53 361 5.64e-51 174
Msa1306070 AT2G04570.1 34.277 318 189 9 4 309 29 338 1.58e-50 171
Msa1306070 AT3G04290.1 32.143 336 206 7 5 327 31 357 2.54e-50 171
Msa1306070 AT5G33370.1 31.361 338 210 7 5 329 32 360 7.88e-49 167
Msa1306070 AT5G18430.1 32.153 339 204 9 5 327 30 358 1.02e-48 167
Msa1306070 AT3G16370.1 32.508 323 189 11 4 309 31 341 1.41e-48 166
Msa1306070 AT1G06990.1 31.498 327 194 10 1 309 34 348 2.19e-48 166
Msa1306070 AT4G28780.1 31.563 339 208 9 5 329 33 361 7.76e-48 165
Msa1306070 AT1G20120.1 33.019 318 195 9 4 310 79 389 1.53e-47 165
Msa1306070 AT1G71691.2 31.045 335 211 6 4 328 56 380 2.60e-47 164
Msa1306070 AT2G23540.1 30.612 343 211 10 5 328 50 384 3.70e-47 164
Msa1306070 AT3G50400.1 31.105 344 209 12 5 328 36 371 6.99e-47 162
Msa1306070 AT3G14820.1 33.228 316 193 10 4 310 33 339 1.57e-46 161
Msa1306070 AT4G18970.1 30.564 337 213 8 5 328 30 358 3.03e-46 160
Msa1306070 AT1G75890.2 31.546 317 200 9 4 309 48 358 5.82e-46 160
Msa1306070 AT5G03820.1 30.031 323 200 10 4 310 34 346 7.70e-46 159
Msa1306070 AT1G75890.3 31.546 317 200 9 4 309 77 387 8.73e-46 160
Msa1306070 AT4G18970.2 30.564 337 213 8 5 328 30 358 1.60e-45 160
Msa1306070 AT4G10950.2 28.235 340 223 9 4 330 72 403 2.49e-45 159
Msa1306070 AT5G03820.2 30.530 321 201 9 4 310 62 374 3.45e-45 158
Msa1306070 AT5G03810.1 28.750 320 207 7 4 310 31 342 3.57e-45 157
Msa1306070 AT1G20132.1 30.218 321 206 8 4 313 62 375 3.59e-45 158
Msa1306070 AT5G45670.1 30.267 337 214 8 5 328 31 359 3.94e-45 158
Msa1306070 AT1G59406.1 31.746 315 196 10 4 308 31 336 9.25e-45 156
Msa1306070 AT1G59030.1 31.746 315 196 10 4 308 31 336 9.25e-45 156
Msa1306070 AT1G58725.1 31.746 315 196 10 4 308 31 336 9.25e-45 156
Msa1306070 AT3G53100.1 30.368 326 204 10 4 315 30 346 1.75e-44 155
Msa1306070 AT5G42170.1 31.310 313 200 8 4 308 51 356 2.82e-44 155
Msa1306070 AT1G75890.1 30.303 330 200 9 4 309 48 371 3.81e-44 155
Msa1306070 AT1G20130.2 31.515 330 195 11 4 312 185 504 3.94e-44 158
Msa1306070 AT5G15720.2 35.985 264 152 7 5 254 32 292 6.13e-44 153
Msa1306070 AT1G20130.1 31.515 330 195 11 4 312 205 524 7.40e-44 158
Msa1306070 AT1G29660.1 30.581 327 204 9 5 318 34 350 8.28e-44 154
Msa1306070 AT2G19010.1 31.487 343 195 12 4 331 31 348 1.49e-43 153
Msa1306070 AT1G58520.3 31.761 318 185 10 4 308 31 329 2.05e-43 152
Msa1306070 AT1G58525.1 31.761 318 185 10 4 308 31 329 2.05e-43 152
Msa1306070 AT5G37690.1 29.448 326 204 9 2 313 26 339 2.16e-43 153
Msa1306070 AT2G42990.1 30.721 319 201 9 4 310 29 339 2.26e-43 153
Msa1306070 AT5G22810.1 30.240 334 208 11 4 321 35 359 2.94e-43 153
Msa1306070 AT2G19010.2 31.487 343 195 12 4 331 61 378 3.41e-43 153
Msa1306070 AT1G29670.1 30.631 333 206 10 4 323 33 353 6.56e-43 152
Msa1306070 AT4G10950.1 27.941 340 220 10 4 330 72 399 1.21e-42 152
Msa1306070 AT1G75880.1 30.599 317 201 8 4 308 53 362 2.96e-42 150
Msa1306070 AT1G58430.1 30.721 319 195 8 3 303 31 341 3.10e-42 150
Msa1306070 AT5G08460.1 29.565 345 218 9 1 328 46 382 4.08e-42 150
Msa1306070 AT1G29670.2 30.631 333 206 10 4 323 101 421 4.10e-42 151
Msa1306070 AT3G14220.1 31.642 335 202 13 4 328 33 350 5.76e-42 149
Msa1306070 AT2G30220.1 30.247 324 202 8 4 312 34 348 6.12e-42 149
Msa1306070 AT1G75880.2 30.380 316 202 8 4 308 53 361 8.17e-42 149
Msa1306070 AT2G24560.1 30.422 332 197 11 3 312 30 349 1.66e-41 148
Msa1306070 AT5G55050.1 30.904 343 210 11 4 328 40 373 2.21e-41 148
Msa1306070 AT5G63170.1 32.692 312 176 12 4 302 29 319 2.32e-41 147
Msa1306070 AT2G19060.1 31.454 337 197 12 5 328 32 347 6.93e-41 146
Msa1306070 AT2G30310.1 29.595 321 208 7 4 312 35 349 8.42e-41 146
Msa1306070 AT1G20135.1 29.560 318 190 9 4 308 30 326 1.22e-40 145
Msa1306070 AT1G75900.1 28.840 319 210 8 4 312 44 355 1.51e-40 145
Msa1306070 AT2G27360.1 32.000 350 205 14 4 328 34 375 3.17e-40 145
Msa1306070 AT1G54010.1 29.762 336 207 11 4 328 37 354 3.99e-40 145
Msa1306070 AT1G74460.1 29.503 322 203 9 5 312 25 336 1.17e-39 143
Msa1306070 AT1G28570.1 30.000 350 211 13 7 331 38 378 1.83e-39 143
Msa1306070 AT1G28650.1 30.887 327 207 8 7 315 41 366 1.94e-39 143
Msa1306070 AT1G28600.1 30.659 349 209 13 7 331 35 374 2.00e-39 143
Msa1306070 AT1G54000.1 29.204 339 211 12 1 328 34 354 2.95e-39 143
Msa1306070 AT5G15720.3 30.556 288 181 6 55 328 48 330 4.92e-39 141
Msa1306070 AT2G19050.1 30.678 339 195 13 5 328 33 346 7.71e-39 141
Msa1306070 AT5G37690.2 28.308 325 201 9 2 313 26 331 7.79e-39 140
Msa1306070 AT1G28580.1 30.088 339 202 11 7 319 41 370 2.87e-38 140
Msa1306070 AT3G14210.1 29.240 342 207 13 2 328 35 356 3.90e-38 140
Msa1306070 AT1G71250.1 26.923 338 225 7 4 328 42 370 4.65e-38 139
Msa1306070 AT1G28640.1 30.149 335 199 10 7 315 39 364 4.68e-38 140
Msa1306070 AT2G31540.1 28.793 323 208 7 4 312 36 350 1.01e-37 138
Msa1306070 AT1G28590.1 30.172 348 213 13 7 331 40 380 1.58e-37 139
Msa1306070 AT1G75920.2 31.366 322 187 11 4 310 30 332 2.54e-37 137
Msa1306070 AT4G01130.1 29.032 341 211 8 4 318 35 370 5.31e-37 137
Msa1306070 AT1G33811.1 29.619 341 216 10 4 328 35 367 1.56e-36 135
Msa1306070 AT4G30140.1 28.529 333 208 8 5 328 35 346 1.64e-36 134
Msa1306070 AT1G54020.2 27.327 333 216 11 4 329 34 347 2.72e-36 134
Msa1306070 AT1G75910.1 29.283 321 196 9 4 310 29 332 3.62e-36 134
Msa1306070 AT1G31550.2 30.398 352 200 14 7 328 40 376 7.93e-36 134
Msa1306070 AT1G23500.1 32.500 320 180 12 4 309 36 333 1.02e-35 132
Msa1306070 AT2G03980.2 30.864 324 195 13 4 314 44 351 1.20e-35 133
Msa1306070 AT2G03980.3 30.864 324 195 13 4 314 44 351 1.20e-35 133
Msa1306070 AT2G03980.1 30.864 324 195 13 4 314 44 351 1.20e-35 133
Msa1306070 AT2G03980.4 30.864 324 195 13 4 314 44 351 1.20e-35 133
Msa1306070 AT1G73610.1 30.625 320 185 11 4 309 36 332 1.95e-35 132
Msa1306070 AT3G43550.1 31.559 263 161 8 4 254 31 286 2.61e-35 130
Msa1306070 AT1G54030.2 33.058 242 142 7 4 240 53 279 7.90e-35 129
Msa1306070 AT1G28610.2 30.205 341 202 12 7 321 35 365 2.48e-34 129
Msa1306070 AT1G28660.1 29.394 330 214 8 4 315 36 364 3.08e-34 129
Msa1306070 AT3G43570.1 27.302 315 181 8 4 308 31 307 3.77e-34 127
Msa1306070 AT3G48460.1 27.273 330 217 10 4 315 39 363 5.35e-34 129
Msa1306070 AT1G28670.1 30.091 329 208 8 7 315 39 365 5.40e-34 129
Msa1306070 AT5G03610.1 30.599 317 192 10 4 308 44 344 7.59e-34 128
Msa1306070 AT1G75920.1 29.970 337 187 12 4 310 25 342 1.96e-33 126
Msa1306070 AT1G28660.2 29.697 330 212 9 4 315 36 363 3.67e-33 126
Msa1306070 AT1G71691.3 31.801 261 163 5 4 254 56 311 5.67e-33 124
Msa1306070 AT5G14450.1 28.363 342 205 10 4 315 42 373 5.95e-33 126
Msa1306070 AT1G31550.1 29.915 351 200 15 7 328 40 373 6.74e-33 126
Msa1306070 AT1G75930.1 29.688 320 195 11 4 310 30 332 5.83e-32 122
Msa1306070 AT1G54790.3 30.523 344 195 14 7 318 36 367 9.35e-32 122
Msa1306070 AT5G45910.1 32.070 343 193 12 4 315 31 364 1.34e-31 122
Msa1306070 AT3G26430.1 28.947 342 205 8 4 315 32 365 1.78e-31 122
Msa1306070 AT2G19050.2 32.661 248 144 8 5 240 33 269 3.21e-31 119
Msa1306070 AT1G67830.1 29.217 332 203 10 4 308 31 357 7.39e-31 120
Msa1306070 AT1G71691.1 25.965 285 193 5 54 328 3 279 9.16e-31 118
Msa1306070 AT3G09930.2 30.124 322 188 14 4 308 40 341 1.48e-30 119
Msa1306070 AT3G09930.1 30.124 322 188 14 4 308 40 341 1.48e-30 119
Msa1306070 AT5G33370.2 29.658 263 168 6 5 254 32 290 5.47e-30 117
Msa1306070 AT1G09390.1 27.928 333 210 11 4 318 38 358 7.84e-30 117
Msa1306070 AT1G56670.1 28.571 329 205 10 4 314 41 357 7.88e-30 117
Msa1306070 AT1G75920.3 28.707 317 171 10 4 310 30 301 2.29e-29 115
Msa1306070 AT1G75920.4 29.630 297 177 10 29 310 25 304 6.68e-29 113
Msa1306070 AT2G24560.2 29.242 277 167 10 3 257 30 299 2.14e-28 112
Msa1306070 AT3G05180.1 27.586 348 212 12 4 321 37 374 5.98e-28 112
Msa1306070 AT5G03600.1 30.159 315 188 10 4 308 15 307 1.37e-27 110
Msa1306070 AT5G03600.2 30.159 315 188 10 4 308 50 342 1.71e-27 110
Msa1306070 AT1G54790.1 28.931 318 188 12 32 318 56 366 2.26e-26 108
Msa1306070 AT3G62280.1 29.310 290 187 7 32 308 61 345 4.58e-26 107
Msa1306070 AT4G01130.2 28.625 269 169 5 4 254 35 298 9.82e-26 105
Msa1306070 AT2G04020.2 30.124 322 158 13 4 314 44 309 1.28e-25 105
Msa1306070 AT2G04020.1 35.859 198 117 6 4 193 44 239 2.74e-25 102
Msa1306070 AT1G53970.2 65.217 69 24 0 4 72 21 89 4.73e-24 94.7
Msa1306070 AT1G53970.1 65.217 69 24 0 4 72 21 89 4.73e-24 94.7
Msa1306070 AT4G16230.1 32.663 199 117 7 5 189 32 227 5.72e-24 99.0
Msa1306070 AT4G01130.3 26.408 284 183 7 61 318 1 284 1.26e-23 99.0
Msa1306070 AT2G36325.1 29.091 330 196 16 4 317 48 355 1.41e-23 100
Msa1306070 AT3G27950.1 26.844 339 219 9 4 322 33 362 5.15e-23 98.6
Msa1306070 AT1G28600.2 34.857 175 94 6 7 166 35 204 4.45e-22 93.2
Msa1306070 AT2G31550.1 25.592 211 141 3 105 308 4 205 5.73e-22 92.8
Msa1306070 AT1G28580.2 26.460 291 180 10 54 319 8 289 1.06e-21 94.0
Msa1306070 AT1G56670.2 28.679 265 167 8 4 254 41 297 2.53e-21 92.8
Msa1306070 AT1G54790.2 27.326 344 186 14 32 318 56 392 2.87e-21 94.0
Msa1306070 AT1G54020.4 24.880 209 145 5 127 329 10 212 1.56e-20 89.4
Msa1306070 AT1G54020.1 24.880 209 145 5 127 329 59 261 2.85e-20 89.7
Msa1306070 AT1G54020.5 24.880 209 145 5 127 329 59 261 2.85e-20 89.7
Msa1306070 AT1G54020.3 24.880 209 145 5 127 329 59 261 2.85e-20 89.7
Msa1306070 AT3G62280.2 32.143 224 134 7 32 242 61 279 7.07e-20 88.6
Msa1306070 AT3G14210.2 25.943 212 142 7 127 328 22 228 1.17e-17 82.0
Msa1306070 AT1G28570.3 27.014 211 132 8 136 331 12 215 1.93e-16 77.8
Msa1306070 AT4G16233.1 31.496 127 81 2 203 328 6 127 2.36e-16 75.1
Msa1306070 AT1G28570.2 27.014 211 132 8 136 331 103 306 7.70e-16 77.4
Msa1306070 AT1G28610.1 33.708 178 92 8 7 166 35 204 2.58e-15 75.1
Msa1306070 AT5G03980.1 26.457 223 147 8 100 312 95 310 7.49e-15 74.7
Msa1306070 AT4G16220.1 48.864 88 39 5 5 89 32 116 5.52e-11 62.4

Find 81 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTTCCACTCCACATAAAT+TGG 0.125155 8_4:-746218 None:intergenic
GAGATTGGAGGGAGGAAATT+TGG 0.128940 8_4:+745188 Msa1306070:CDS
ATAAGGAACCCTTCCAAATT+TGG 0.194977 8_4:+745416 Msa1306070:CDS
ATGTTGCCATTATTTGTATT+TGG 0.221006 8_4:+743676 Msa1306070:CDS
AATAGGTATGGTTGGATTAA+TGG 0.239105 8_4:-744050 None:intergenic
ATGTCGTAACCTACCAAATT+TGG 0.250255 8_4:-745429 None:intergenic
TAAAGGCTTAATTAATGATT+TGG 0.270197 8_4:+746330 Msa1306070:three_prime_UTR
AGATTGGAGGGAGGAAATTT+GGG 0.288893 8_4:+745189 Msa1306070:CDS
CAATACTATTACTGATTATA+AGG 0.292108 8_4:+743735 Msa1306070:CDS
ACCATCAAGGCATTTGTAAA+TGG 0.295353 8_4:+745245 Msa1306070:CDS
AAATTGATTCCATTAATATA+TGG 0.296032 8_4:-744086 None:intergenic
TCCATTTACAAATGCCTTGA+TGG 0.302148 8_4:-745246 None:intergenic
GGTAATCAACCATATATTAA+TGG 0.309300 8_4:+744077 Msa1306070:CDS
ATAATGGCAACATGTTCTTT+TGG 0.315209 8_4:-743666 None:intergenic
GAATCTCCAAATACAAATAA+TGG 0.327621 8_4:-743682 None:intergenic
AAAGTATTGAGGCAGAAATT+AGG 0.330525 8_4:+744667 Msa1306070:CDS
TGTAACCAACAAATAACTTA+AGG 0.379096 8_4:-746355 None:intergenic
ATCCAACCATACCTATTTCC+TGG 0.385448 8_4:+744056 Msa1306070:CDS
ATCTATTTATTGAAGTCATA+AGG 0.388340 8_4:+745399 Msa1306070:CDS
ATACTGTTCATTTCTTTCAA+TGG 0.388584 8_4:+743393 None:intergenic
GTTGATTAAGTAAACAGCTT+TGG 0.391709 8_4:-744716 None:intergenic
TTTCAGGGAATACATGAGAT+TGG 0.392735 8_4:+745173 Msa1306070:intron
TTGTTTGTAAGATAAAATAA+AGG 0.398093 8_4:+746313 Msa1306070:three_prime_UTR
TTGAAGAAGGTTTCACCATA+TGG 0.403375 8_4:-743769 None:intergenic
TACTGTTCATTTCTTTCAAT+GGG 0.405837 8_4:+743394 None:intergenic
ATGGTTGATTACCAGGAAAT+AGG 0.408868 8_4:-744067 None:intergenic
CTGTGGTAGTGGACCTTACA+AGG 0.416741 8_4:+746077 Msa1306070:CDS
ATATTCTTACCTATGAAATC+TGG 0.418997 8_4:-743829 None:intergenic
GGAGATTCATTATTTGATGT+TGG 0.437677 8_4:+743697 Msa1306070:CDS
ATTTCCACTCCACATAAATT+GGG 0.446800 8_4:-746217 None:intergenic
TAAAACAGACCAATCCTTGA+TGG 0.450380 8_4:-744142 None:intergenic
CGTGTCATTCCAGATTTCAT+AGG 0.463040 8_4:+743820 Msa1306070:CDS
GGATTATTTCCCAATTTATG+TGG 0.464274 8_4:+746208 Msa1306070:CDS
GTAACCAACAAATAACTTAA+GGG 0.464278 8_4:-746354 None:intergenic
TTTACAAATGCCTTGATGGT+TGG 0.467592 8_4:-745242 None:intergenic
TAAAATACATTGGAAGTATG+AGG 0.478701 8_4:-743448 None:intergenic
ACCTTCTTCAAGTATCCATC+TGG 0.479315 8_4:+743781 Msa1306070:CDS
GCTGTTTACTTAATCAACAT+TGG 0.479448 8_4:+744721 Msa1306070:CDS
TACCAGGAAATAGGTATGGT+TGG 0.479453 8_4:-744058 None:intergenic
CAACTGTAATATCCCTTGTA+AGG 0.490108 8_4:-746090 None:intergenic
TGATGAAAAGGTTTGAAAGA+AGG 0.492946 8_4:+746042 Msa1306070:intron
ATCCTACTGAAAGTGGTAGT+AGG 0.505228 8_4:+746187 Msa1306070:CDS
TTAATATATGGTTGATTACC+AGG 0.510677 8_4:-744074 None:intergenic
AAGGCTAATTACCCACCATA+TGG 0.510729 8_4:+743754 Msa1306070:CDS
TGAAGAAACCACAACTCTGC+TGG 0.512505 8_4:+744693 Msa1306070:CDS
TCTACTCATCCTACTGAAAG+TGG 0.515691 8_4:+746180 Msa1306070:CDS
ATTTCCCAATTTATGTGGAG+TGG 0.520045 8_4:+746213 Msa1306070:CDS
AGTAGAAACCCATCAAGGAT+TGG 0.522697 8_4:+744133 Msa1306070:CDS
GGAGTGGCATGCTGTGGTAG+TGG 0.524114 8_4:+746066 Msa1306070:CDS
AGCTTTGGCCAGCAGAGTTG+TGG 0.539024 8_4:-744701 None:intergenic
ATTCTTAACACACCATCACT+TGG 0.539789 8_4:+745212 Msa1306070:CDS
TACAAGGGATATTACAGTTG+TGG 0.540378 8_4:+746093 Msa1306070:CDS
CAGGGAATACATGAGATTGG+AGG 0.540491 8_4:+745176 Msa1306070:intron
TGATTACCAGGAAATAGGTA+TGG 0.543177 8_4:-744062 None:intergenic
ACCAGATGGATACTTGAAGA+AGG 0.545031 8_4:-743782 None:intergenic
GTTTACTTAATCAACATTGG+AGG 0.549518 8_4:+744724 Msa1306070:CDS
TGAAAAGGTTTGAAAGAAGG+AGG 0.555812 8_4:+746045 Msa1306070:intron
CGTAACCTACCAAATTTGGA+AGG 0.560332 8_4:-745425 None:intergenic
AAAACAGACCAATCCTTGAT+GGG 0.561674 8_4:-744141 None:intergenic
ACAGTATATATAAAATACAT+TGG 0.562016 8_4:-743458 None:intergenic
GAATTAGCATTTCATAACAT+AGG 0.566990 8_4:-743620 None:intergenic
AGGGAATACATGAGATTGGA+GGG 0.573956 8_4:+745177 Msa1306070:intron
AAACATATGTTACCAAGTGT+TGG 0.574366 8_4:-743642 None:intergenic
AAGAAGGTTTCACCATATGG+TGG 0.576872 8_4:-743766 None:intergenic
TCAAAGAACAAATATTCAGA+AGG 0.585525 8_4:-746156 None:intergenic
AGGTTTGAAAGAAGGAGGAG+TGG 0.592194 8_4:+746050 Msa1306070:intron
TAGTTTAGTGTTGTGCACTT+TGG 0.595776 8_4:-745309 None:intergenic
AAATACGTATCAATGGTTGT+TGG 0.595900 8_4:+744790 Msa1306070:CDS
CCATCAGAAAATCTACCAGA+TGG 0.603978 8_4:-743796 None:intergenic
AGAAGGTTTCACCATATGGT+GGG 0.608192 8_4:-743765 None:intergenic
AAGGGATATTACAGTTGTGG+AGG 0.618906 8_4:+746096 Msa1306070:CDS
GAAATGCTAATTCCAACACT+TGG 0.621217 8_4:+743630 Msa1306070:five_prime_UTR
GCTTTAGTAGAAACCCATCA+AGG 0.622832 8_4:+744128 Msa1306070:CDS
AGAATGTCAAGAAAGTATTG+AGG 0.633947 8_4:+744656 Msa1306070:CDS
AATTTAACGAAACAGATCAA+AGG 0.635768 8_4:+745347 Msa1306070:CDS
ATCCTACTACCACTTTCAGT+AGG 0.638183 8_4:-746189 None:intergenic
GAAGGAGGAGTGGCATGCTG+TGG 0.638304 8_4:+746060 Msa1306070:CDS
GTAACCTACCAAATTTGGAA+GGG 0.642469 8_4:-745424 None:intergenic
GTTGGAAAACAACCAAGTGA+TGG 0.678111 8_4:-745224 None:intergenic
TGTGGTAGTGGACCTTACAA+GGG 0.691944 8_4:+746078 Msa1306070:CDS
GAATACATGAGATTGGAGGG+AGG 0.702913 8_4:+745180 Msa1306070:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTATATAAGTTATTTATTA+CGG - chr8_4:743920-743939 None:intergenic 10.0%
!!! TAATTTTTTAGCTAATTAAT+TGG + chr8_4:744202-744221 Msa1306070:intron 10.0%
!!! AATTTTTTAGCTAATTAATT+GGG + chr8_4:744203-744222 Msa1306070:intron 10.0%
!! ACAGTATATATAAAATACAT+TGG - chr8_4:743461-743480 None:intergenic 15.0%
!!! AAATTGATTCCATTAATATA+TGG - chr8_4:744089-744108 None:intergenic 15.0%
!!! ATTTTTTAGCTAATTAATTG+GGG + chr8_4:744204-744223 Msa1306070:intron 15.0%
!!! ATGAAGTAACATTTTTTTTT+TGG + chr8_4:744295-744314 Msa1306070:intron 15.0%
!! TATAGTATTTAAATACAATC+TGG - chr8_4:744362-744381 None:intergenic 15.0%
!! AATTTCATAATACAAATTTG+CGG - chr8_4:745812-745831 None:intergenic 15.0%
!!! ATATAACCTATTTAATTTGA+TGG - chr8_4:745841-745860 None:intergenic 15.0%
!!! GATATTAGTTTTCAATATAA+TGG + chr8_4:745907-745926 Msa1306070:intron 15.0%
!! TTGTTTGTAAGATAAAATAA+AGG + chr8_4:746313-746332 Msa1306070:three_prime_UTR 15.0%
!!! GGATTCTTTTTTTTTTTGTT+GGG - chr8_4:743532-743551 None:intergenic 20.0%
!!! TGGATTCTTTTTTTTTTTGT+TGG - chr8_4:743533-743552 None:intergenic 20.0%
!! TAATTTCTCAAAATACTCTT+TGG - chr8_4:743553-743572 None:intergenic 20.0%
!!! TTTTGAGAAATTAACTTAGA+TGG + chr8_4:743560-743579 Msa1306070:five_prime_UTR 20.0%
!!! CAATACTATTACTGATTATA+AGG + chr8_4:743735-743754 Msa1306070:CDS 20.0%
!! AATTGAAATGCATTAAAGTA+CGG - chr8_4:743970-743989 None:intergenic 20.0%
!! GTCAAAAAAAAAAAATTGAG+AGG - chr8_4:744393-744412 None:intergenic 20.0%
!!! TATGGTGTTTATATATTTTC+AGG + chr8_4:744558-744577 Msa1306070:intron 20.0%
!!! TTTGGATTGACTTATTTAAA+CGG + chr8_4:744903-744922 Msa1306070:intron 20.0%
!! ATTAAAAATAAGTAGATACG+AGG - chr8_4:744987-745006 None:intergenic 20.0%
!! TACATAAACACTTGTATAAT+AGG + chr8_4:745059-745078 Msa1306070:intron 20.0%
!! ATTAGAATAGTAGAAGATTT+AGG - chr8_4:745121-745140 None:intergenic 20.0%
!!! TCATTCCAATATTTAATTTC+AGG + chr8_4:745157-745176 Msa1306070:intron 20.0%
!!! CATTCCAATATTTAATTTCA+GGG + chr8_4:745158-745177 Msa1306070:intron 20.0%
!! TATTCCCTGAAATTAAATAT+TGG - chr8_4:745165-745184 None:intergenic 20.0%
!! ATCTATTTATTGAAGTCATA+AGG + chr8_4:745399-745418 Msa1306070:CDS 20.0%
!! ATTCGACAAAAAATTATTGA+AGG - chr8_4:745500-745519 None:intergenic 20.0%
!!! TTTGAAGTCATTGATTTAAT+TGG - chr8_4:745591-745610 None:intergenic 20.0%
!! TGTTATGGTGTAAAAAAATA+CGG - chr8_4:745745-745764 None:intergenic 20.0%
!! TTGATACATTAAATGTGTTA+TGG - chr8_4:745760-745779 None:intergenic 20.0%
!! ATTTCATAATACAAATTTGC+GGG - chr8_4:745811-745830 None:intergenic 20.0%
!!! TTATCCAATTCTAAAATTTG+TGG + chr8_4:746009-746028 Msa1306070:intron 20.0%
!! TAAAGGCTTAATTAATGATT+TGG + chr8_4:746330-746349 Msa1306070:three_prime_UTR 20.0%
!! TAAAATACATTGGAAGTATG+AGG - chr8_4:743451-743470 None:intergenic 25.0%
! GAATTAGCATTTCATAACAT+AGG - chr8_4:743623-743642 None:intergenic 25.0%
! ATGTTGCCATTATTTGTATT+TGG + chr8_4:743676-743695 Msa1306070:CDS 25.0%
! GAATCTCCAAATACAAATAA+TGG - chr8_4:743685-743704 None:intergenic 25.0%
! ATATTCTTACCTATGAAATC+TGG - chr8_4:743832-743851 None:intergenic 25.0%
! CTCATGATTAGATTGTTAAT+TGG - chr8_4:744000-744019 None:intergenic 25.0%
! TTAATATATGGTTGATTACC+AGG - chr8_4:744077-744096 None:intergenic 25.0%
! GGTAATCAACCATATATTAA+TGG + chr8_4:744077-744096 Msa1306070:CDS 25.0%
!! TTTTACTTGTCTAGACTTTT+TGG + chr8_4:744241-744260 Msa1306070:intron 25.0%
! TTGACATGTCAATAGAAAAT+TGG + chr8_4:744408-744427 Msa1306070:intron 25.0%
! TGTCAAATAACTAAACAACT+CGG - chr8_4:744452-744471 None:intergenic 25.0%
!! ATAAGAGAGTTGATCATATA+TGG + chr8_4:744582-744601 Msa1306070:intron 25.0%
! TCATGAAAAATACGTATCAA+TGG + chr8_4:744783-744802 Msa1306070:CDS 25.0%
! ACTACGATATTAGAAAATAC+AGG - chr8_4:744859-744878 None:intergenic 25.0%
!! TTCTAATATCGTAGTTCTTT+TGG + chr8_4:744864-744883 Msa1306070:intron 25.0%
! GGTTATGATTAAAACATGTT+TGG + chr8_4:744885-744904 Msa1306070:intron 25.0%
! AATTTAACGAAACAGATCAA+AGG + chr8_4:745347-745366 Msa1306070:CDS 25.0%
! TAATGTATCAACCTAAACAT+TGG + chr8_4:745769-745788 Msa1306070:intron 25.0%
! AATGTATCAACCTAAACATT+GGG + chr8_4:745770-745789 Msa1306070:intron 25.0%
! GACTTACCATCAAATTAAAT+AGG + chr8_4:745832-745851 Msa1306070:intron 25.0%
!!! TAAGCCACAAATTTTAGAAT+TGG - chr8_4:746016-746035 None:intergenic 25.0%
! TCAAAGAACAAATATTCAGA+AGG - chr8_4:746159-746178 None:intergenic 25.0%
!!! ATAGAGTTTTGAGATTGTAA+GGG - chr8_4:746257-746276 None:intergenic 25.0%
!!! AATAGAGTTTTGAGATTGTA+AGG - chr8_4:746258-746277 None:intergenic 25.0%
AAACATATGTTACCAAGTGT+TGG - chr8_4:743645-743664 None:intergenic 30.0%
! ATAATGGCAACATGTTCTTT+TGG - chr8_4:743669-743688 None:intergenic 30.0%
GGAGATTCATTATTTGATGT+TGG + chr8_4:743697-743716 Msa1306070:CDS 30.0%
AATAGGTATGGTTGGATTAA+TGG - chr8_4:744053-744072 None:intergenic 30.0%
TCTAGACAAGTAAAAATACG+AGG - chr8_4:744236-744255 None:intergenic 30.0%
!!! GTTTTAGAAATCTTGATGAG+TGG - chr8_4:744267-744286 None:intergenic 30.0%
! AACTAAACAACTCGGATTTT+TGG - chr8_4:744444-744463 None:intergenic 30.0%
! GTATAAGAGAGTTGATCATA+TGG + chr8_4:744540-744559 Msa1306070:intron 30.0%
!! AGAATGTCAAGAAAGTATTG+AGG + chr8_4:744656-744675 Msa1306070:CDS 30.0%
!! AAAGTATTGAGGCAGAAATT+AGG + chr8_4:744667-744686 Msa1306070:CDS 30.0%
GTTGATTAAGTAAACAGCTT+TGG - chr8_4:744719-744738 None:intergenic 30.0%
GCTGTTTACTTAATCAACAT+TGG + chr8_4:744721-744740 Msa1306070:CDS 30.0%
GTTTACTTAATCAACATTGG+AGG + chr8_4:744724-744743 Msa1306070:CDS 30.0%
! TTTTTCATGAGTGTATAAGC+TGG - chr8_4:744773-744792 None:intergenic 30.0%
AAATACGTATCAATGGTTGT+TGG + chr8_4:744790-744809 Msa1306070:CDS 30.0%
!! GGCTTAATTTGATGATGAAA+AGG + chr8_4:746030-746049 Msa1306070:intron 30.0%
TGATGAAAAGGTTTGAAAGA+AGG + chr8_4:746042-746061 Msa1306070:intron 30.0%
GGATTATTTCCCAATTTATG+TGG + chr8_4:746208-746227 Msa1306070:CDS 30.0%
ATTTCCACTCCACATAAATT+GGG - chr8_4:746220-746239 None:intergenic 30.0%
GTTGGGTGATTAATACTCTT+CGG - chr8_4:743515-743534 None:intergenic 35.0%
GAAATGCTAATTCCAACACT+TGG + chr8_4:743630-743649 Msa1306070:five_prime_UTR 35.0%
TTGAAGAAGGTTTCACCATA+TGG - chr8_4:743772-743791 None:intergenic 35.0%
TGATTACCAGGAAATAGGTA+TGG - chr8_4:744065-744084 None:intergenic 35.0%
ATGGTTGATTACCAGGAAAT+AGG - chr8_4:744070-744089 None:intergenic 35.0%
AAAACAGACCAATCCTTGAT+GGG - chr8_4:744144-744163 None:intergenic 35.0%
TAAAACAGACCAATCCTTGA+TGG - chr8_4:744145-744164 None:intergenic 35.0%
! CTCAAAACTAGCTGATAATG+TGG - chr8_4:744324-744343 None:intergenic 35.0%
!!! CACATTATCAGCTAGTTTTG+AGG + chr8_4:744322-744341 Msa1306070:intron 35.0%
TTTCAGGGAATACATGAGAT+TGG + chr8_4:745173-745192 Msa1306070:intron 35.0%
ATTCTTAACACACCATCACT+TGG + chr8_4:745212-745231 Msa1306070:CDS 35.0%
! TTTACAAATGCCTTGATGGT+TGG - chr8_4:745245-745264 None:intergenic 35.0%
! ACCATCAAGGCATTTGTAAA+TGG + chr8_4:745245-745264 Msa1306070:CDS 35.0%
TCCATTTACAAATGCCTTGA+TGG - chr8_4:745249-745268 None:intergenic 35.0%
TAGTTTAGTGTTGTGCACTT+TGG - chr8_4:745312-745331 None:intergenic 35.0%
ATAAGGAACCCTTCCAAATT+TGG + chr8_4:745416-745435 Msa1306070:CDS 35.0%
GTAACCTACCAAATTTGGAA+GGG - chr8_4:745427-745446 None:intergenic 35.0%
ATGTCGTAACCTACCAAATT+TGG - chr8_4:745432-745451 None:intergenic 35.0%
GAAGGAATAACCCAATGTTT+AGG - chr8_4:745783-745802 None:intergenic 35.0%
TAATACAAATTTGCGGGTCA+CGG - chr8_4:745805-745824 None:intergenic 35.0%
TGAAAAGGTTTGAAAGAAGG+AGG + chr8_4:746045-746064 Msa1306070:intron 35.0%
CAACTGTAATATCCCTTGTA+AGG - chr8_4:746093-746112 None:intergenic 35.0%
TACAAGGGATATTACAGTTG+TGG + chr8_4:746093-746112 Msa1306070:CDS 35.0%
ATTTCCCAATTTATGTGGAG+TGG + chr8_4:746213-746232 Msa1306070:CDS 35.0%
GATTTCCACTCCACATAAAT+TGG - chr8_4:746221-746240 None:intergenic 35.0%
AAGGCTAATTACCCACCATA+TGG + chr8_4:743754-743773 Msa1306070:CDS 40.0%
AGAAGGTTTCACCATATGGT+GGG - chr8_4:743768-743787 None:intergenic 40.0%
AAGAAGGTTTCACCATATGG+TGG - chr8_4:743769-743788 None:intergenic 40.0%
ACCTTCTTCAAGTATCCATC+TGG + chr8_4:743781-743800 Msa1306070:CDS 40.0%
ACCAGATGGATACTTGAAGA+AGG - chr8_4:743785-743804 None:intergenic 40.0%
CCATCAGAAAATCTACCAGA+TGG - chr8_4:743799-743818 None:intergenic 40.0%
! CCATCTGGTAGATTTTCTGA+TGG + chr8_4:743796-743815 Msa1306070:CDS 40.0%
! CGTGTCATTCCAGATTTCAT+AGG + chr8_4:743820-743839 Msa1306070:CDS 40.0%
ATCCAACCATACCTATTTCC+TGG + chr8_4:744056-744075 Msa1306070:CDS 40.0%
TACCAGGAAATAGGTATGGT+TGG - chr8_4:744061-744080 None:intergenic 40.0%
! GGAATCAATTTTGCATCTGC+TGG + chr8_4:744098-744117 Msa1306070:CDS 40.0%
GCTTTAGTAGAAACCCATCA+AGG + chr8_4:744128-744147 Msa1306070:CDS 40.0%
AGTAGAAACCCATCAAGGAT+TGG + chr8_4:744133-744152 Msa1306070:CDS 40.0%
AGGGAATACATGAGATTGGA+GGG + chr8_4:745177-745196 Msa1306070:intron 40.0%
AGATTGGAGGGAGGAAATTT+GGG + chr8_4:745189-745208 Msa1306070:CDS 40.0%
GTTGGAAAACAACCAAGTGA+TGG - chr8_4:745227-745246 None:intergenic 40.0%
!! TGGTTGTTTTCCAACCATCA+AGG + chr8_4:745232-745251 Msa1306070:CDS 40.0%
CGTAACCTACCAAATTTGGA+AGG - chr8_4:745428-745447 None:intergenic 40.0%
AAGGGATATTACAGTTGTGG+AGG + chr8_4:746096-746115 Msa1306070:CDS 40.0%
TCTACTCATCCTACTGAAAG+TGG + chr8_4:746180-746199 Msa1306070:CDS 40.0%
ATCCTACTGAAAGTGGTAGT+AGG + chr8_4:746187-746206 Msa1306070:CDS 40.0%
ATCCTACTACCACTTTCAGT+AGG - chr8_4:746192-746211 None:intergenic 40.0%
! AATTTTGCATCTGCTGGAGC+TGG + chr8_4:744104-744123 Msa1306070:CDS 45.0%
! ATTTTGCATCTGCTGGAGCT+GGG + chr8_4:744105-744124 Msa1306070:CDS 45.0%
!!! ATCAGCTAGTTTTGAGGTCC+TGG + chr8_4:744328-744347 Msa1306070:intron 45.0%
! TACAATCTGGTAGTGCAACC+AGG - chr8_4:744349-744368 None:intergenic 45.0%
TGAAGAAACCACAACTCTGC+TGG + chr8_4:744693-744712 Msa1306070:CDS 45.0%
CAGGGAATACATGAGATTGG+AGG + chr8_4:745176-745195 Msa1306070:intron 45.0%
GAATACATGAGATTGGAGGG+AGG + chr8_4:745180-745199 Msa1306070:CDS 45.0%
GAGATTGGAGGGAGGAAATT+TGG + chr8_4:745188-745207 Msa1306070:CDS 45.0%
GGAACCCTTCCAAATTTGGT+AGG + chr8_4:745420-745439 Msa1306070:intron 45.0%
AGGTTTGAAAGAAGGAGGAG+TGG + chr8_4:746050-746069 Msa1306070:intron 45.0%
!! TGTGGTAGTGGACCTTACAA+GGG + chr8_4:746078-746097 Msa1306070:CDS 45.0%
!!! TATTAATTTTTTTGTTATTT+TGG + chr8_4:745709-745728 Msa1306070:intron 5.0%
! TTTTGCATCTGCTGGAGCTG+GGG + chr8_4:744106-744125 Msa1306070:CDS 50.0%
ACAAATTTGCGGGTCACGGA+AGG - chr8_4:745801-745820 None:intergenic 50.0%
!! CTGTGGTAGTGGACCTTACA+AGG + chr8_4:746077-746096 Msa1306070:CDS 50.0%
! AGCTTTGGCCAGCAGAGTTG+TGG - chr8_4:744704-744723 None:intergenic 55.0%
GAAGGAGGAGTGGCATGCTG+TGG + chr8_4:746060-746079 Msa1306070:CDS 60.0%
GGAGTGGCATGCTGTGGTAG+TGG + chr8_4:746066-746085 Msa1306070:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 743408 746365 743408 ID=Msa1306070;Name=Msa1306070
chr8_4 mRNA 743408 746365 743408 ID=Msa1306070-mRNA-1;Parent=Msa1306070;Name=Msa1306070-mRNA-1;_AED=0.06;_eAED=0.06;_QI=201|1|1|1|0.8|0.66|6|78|331
chr8_4 exon 743408 743488 743408 ID=Msa1306070-mRNA-1:exon:86;Parent=Msa1306070-mRNA-1
chr8_4 exon 743556 743841 743556 ID=Msa1306070-mRNA-1:exon:87;Parent=Msa1306070-mRNA-1
chr8_4 exon 744033 744154 744033 ID=Msa1306070-mRNA-1:exon:88;Parent=Msa1306070-mRNA-1
chr8_4 exon 744622 744834 744622 ID=Msa1306070-mRNA-1:exon:89;Parent=Msa1306070-mRNA-1
chr8_4 exon 745179 745437 745179 ID=Msa1306070-mRNA-1:exon:90;Parent=Msa1306070-mRNA-1
chr8_4 exon 746052 746365 746052 ID=Msa1306070-mRNA-1:exon:91;Parent=Msa1306070-mRNA-1
chr8_4 five_prime_UTR 743408 743488 743408 ID=Msa1306070-mRNA-1:five_prime_utr;Parent=Msa1306070-mRNA-1
chr8_4 five_prime_UTR 743556 743675 743556 ID=Msa1306070-mRNA-1:five_prime_utr;Parent=Msa1306070-mRNA-1
chr8_4 CDS 743676 743841 743676 ID=Msa1306070-mRNA-1:cds;Parent=Msa1306070-mRNA-1
chr8_4 CDS 744033 744154 744033 ID=Msa1306070-mRNA-1:cds;Parent=Msa1306070-mRNA-1
chr8_4 CDS 744622 744834 744622 ID=Msa1306070-mRNA-1:cds;Parent=Msa1306070-mRNA-1
chr8_4 CDS 745179 745437 745179 ID=Msa1306070-mRNA-1:cds;Parent=Msa1306070-mRNA-1
chr8_4 CDS 746052 746287 746052 ID=Msa1306070-mRNA-1:cds;Parent=Msa1306070-mRNA-1
chr8_4 three_prime_UTR 746288 746365 746288 ID=Msa1306070-mRNA-1:three_prime_utr;Parent=Msa1306070-mRNA-1
Gene Sequence

>Msa1306070

ATGTTGCCATTATTTGTATTTGGAGATTCATTATTTGATGTTGGAAACAATAATTATATCAATACTATTACTGATTATAAGGCTAATTACCCACCATATGGTGAAACCTTCTTCAAGTATCCATCTGGTAGATTTTCTGATGGACGTGTCATTCCAGATTTCATAGCTGAGTATGCTAAGTTGCCATTAATCCAACCATACCTATTTCCTGGTAATCAACCATATATTAATGGAATCAATTTTGCATCTGCTGGAGCTGGGGCTTTAGTAGAAACCCATCAAGGATTGGTGATAGATCTAAAGACACAATTGAGTTATCTGAAGAATGTCAAGAAAGTATTGAGGCAGAAATTAGGAGATGAAGAAACCACAACTCTGCTGGCCAAAGCTGTTTACTTAATCAACATTGGAGGCAATGATTATTTTGTAGAAAATTCCAGCTTATACACTCATGAAAAATACGTATCAATGGTTGTTGGTAATCTTACAACTGTGATCAAAGGAATACATGAGATTGGAGGGAGGAAATTTGGGATTCTTAACACACCATCACTTGGTTGTTTTCCAACCATCAAGGCATTTGTAAATGGAACTAAATCAAGTTCTTGCATTGAAGAGTATTCAACACTTGCCAAAGTGCACAACACTAAACTATCAGTGAAACTTCAGAATTTAACGAAACAGATCAAAGGATTTAAATATTCTTATTTTGATTTCTTTGATCTATTTATTGAAGTCATAAGGAACCCTTCCAAATTTGGTTTGAAAGAAGGAGGAGTGGCATGCTGTGGTAGTGGACCTTACAAGGGATATTACAGTTGTGGAGGTAAAAGAGACGTAAAAGATTATGACTTGTGTGATAATCCTTCTGAATATTTGTTCTTTGACTCTACTCATCCTACTGAAAGTGGTAGTAGGATTATTTCCCAATTTATGTGGAGTGGAAATCAGAGTATCACTAGCCCTTACAATCTCAAAACTCTATTTGAAGAATAA
Protein sequence

>Msa1306070

MLPLFVFGDSLFDVGNNNYINTITDYKANYPPYGETFFKYPSGRFSDGRVIPDFIAEYAKLPLIQPYLFPGNQPYINGINFASAGAGALVETHQGLVIDLKTQLSYLKNVKKVLRQKLGDEETTTLLAKAVYLINIGGNDYFVENSSLYTHEKYVSMVVGNLTTVIKGIHEIGGRKFGILNTPSLGCFPTIKAFVNGTKSSSCIEEYSTLAKVHNTKLSVKLQNLTKQIKGFKYSYFDFFDLFIEVIRNPSKFGLKEGGVACCGSGPYKGYYSCGGKRDVKDYDLCDNPSEYLFFDSTHPTESGSRIISQFMWSGNQSITSPYNLKTLFEE*