AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1238070

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1238070 MtrunA17_Chr8g0349341 89.049 347 36 1 1 345 19 365 0.0 634
Msa1238070 MtrunA17_Chr8g0349321 78.963 347 71 1 1 345 19 365 0.0 572
Msa1238070 MtrunA17_Chr8g0349331 75.652 345 54 3 1 345 19 333 0.0 523
Msa1238070 MtrunA17_Chr8g0349301 84.053 301 45 2 1 299 19 318 0.0 509
Msa1238070 MtrunA17_Chr8g0344931 58.065 341 127 5 10 344 30 360 1.15e-129 375
Msa1238070 MtrunA17_Chr8g0344941 50.882 340 158 4 13 344 37 375 9.10e-118 345
Msa1238070 MtrunA17_Chr2g0301641 50.000 334 159 4 17 343 43 375 2.12e-109 325
Msa1238070 MtrunA17_Chr1g0189931 35.484 341 196 9 17 343 32 362 6.75e-55 183
Msa1238070 MtrunA17_Chr8g0341001 34.056 323 186 11 17 323 32 343 2.61e-54 182
Msa1238070 MtrunA17_Chr3g0105401 32.308 325 195 9 17 326 28 342 2.45e-53 179
Msa1238070 MtrunA17_Chr7g0275011 34.402 343 201 9 15 343 32 364 2.53e-53 179
Msa1238070 MtrunA17_Chr3g0077571 32.011 353 221 5 1 344 14 356 6.76e-53 178
Msa1238070 MtrunA17_Chr4g0046151 35.202 321 181 10 17 318 36 348 1.32e-52 177
Msa1238070 MtrunA17_Chr7g0274991 33.051 354 206 10 8 343 23 363 3.46e-52 176
Msa1238070 MtrunA17_Chr1g0189901 34.104 346 202 10 12 343 28 361 7.15e-52 176
Msa1238070 MtrunA17_Chr5g0444401 33.918 342 200 8 17 342 28 359 9.88e-52 175
Msa1238070 MtrunA17_Chr7g0275021 33.721 344 204 9 14 343 31 364 2.37e-51 174
Msa1238070 MtrunA17_Chr3g0120861 33.230 322 195 9 17 326 38 351 4.44e-51 173
Msa1238070 MtrunA17_Chr5g0438631 33.956 321 195 7 17 326 28 342 2.32e-50 171
Msa1238070 MtrunA17_Chr1g0189891 34.593 344 190 12 17 343 29 354 7.31e-50 170
Msa1238070 MtrunA17_Chr4g0008851 33.043 345 205 9 14 342 29 363 1.76e-49 169
Msa1238070 MtrunA17_Chr2g0294301 30.994 342 213 8 17 344 35 367 1.92e-49 169
Msa1238070 MtrunA17_Chr7g0275001 32.471 348 212 8 10 343 18 356 3.22e-49 169
Msa1238070 MtrunA17_Chr2g0330781 31.343 335 203 11 17 335 31 354 7.73e-49 167
Msa1238070 MtrunA17_Chr3g0086641 33.746 323 193 9 19 329 40 353 1.64e-48 167
Msa1238070 MtrunA17_Chr1g0182811 33.236 343 201 11 17 342 33 364 7.73e-48 165
Msa1238070 MtrunA17_Chr3g0099231 30.612 343 213 7 17 344 28 360 8.11e-48 166
Msa1238070 MtrunA17_Chr5g0405831 32.424 330 202 9 11 326 35 357 1.03e-47 165
Msa1238070 MtrunA17_Chr4g0068441 29.738 343 218 8 17 345 35 368 1.26e-47 164
Msa1238070 MtrunA17_Chr2g0320671 30.000 320 204 8 17 324 30 341 1.90e-47 164
Msa1238070 MtrunA17_Chr1g0156901 32.698 315 193 9 17 320 50 356 3.11e-47 164
Msa1238070 MtrunA17_Chr8g0371491 31.420 331 203 10 11 326 28 349 3.13e-47 163
Msa1238070 MtrunA17_Chr3g0099161 31.195 343 210 7 17 343 92 424 4.79e-47 164
Msa1238070 MtrunA17_Chr5g0438621 33.333 330 199 10 10 326 22 343 5.51e-47 162
Msa1238070 MtrunA17_Chr4g0027521 30.240 334 214 7 1 323 15 340 7.40e-47 162
Msa1238070 MtrunA17_Chr2g0294311 30.312 353 215 10 14 344 29 372 1.02e-46 162
Msa1238070 MtrunA17_Chr5g0405821 30.030 333 209 10 11 327 35 359 1.38e-46 162
Msa1238070 MtrunA17_Chr2g0283191 33.333 321 187 9 18 318 39 352 1.45e-46 162
Msa1238070 MtrunA17_Chr8g0370981 30.809 383 206 10 13 342 40 416 5.33e-46 161
Msa1238070 MtrunA17_Chr5g0438641 31.366 322 201 9 17 326 32 345 5.48e-46 160
Msa1238070 MtrunA17_Chr6g0457921 30.882 340 210 8 19 343 31 360 7.75e-46 160
Msa1238070 MtrunA17_Chr1g0156891 33.851 322 189 11 8 317 38 347 8.87e-46 159
Msa1238070 MtrunA17_Chr1g0156911 32.177 317 196 9 17 322 37 345 1.76e-45 159
Msa1238070 MtrunA17_Chr4g0060811 29.814 322 204 7 15 323 25 337 1.90e-45 159
Msa1238070 MtrunA17_Chr7g0215961 31.831 355 209 12 2 343 16 350 3.06e-45 158
Msa1238070 MtrunA17_Chr3g0092131 30.124 322 203 7 15 323 21 333 6.89e-45 157
Msa1238070 MtrunA17_Chr1g0156921 33.232 328 194 11 8 322 37 352 9.65e-45 157
Msa1238070 MtrunA17_Chr8g0380041 31.579 323 200 8 19 329 33 346 1.16e-44 157
Msa1238070 MtrunA17_Chr1g0156931 32.727 330 198 11 2 320 30 346 1.40e-44 156
Msa1238070 MtrunA17_Chr3g0099151 33.236 343 202 9 17 342 87 419 1.46e-44 158
Msa1238070 MtrunA17_Chr8g0374101 30.484 351 209 12 17 344 37 375 1.68e-43 154
Msa1238070 MtrunA17_Chr3g0131321 31.686 344 212 8 17 345 34 369 4.26e-43 153
Msa1238070 MtrunA17_Chr5g0432101 30.864 324 202 9 17 326 33 348 6.05e-43 152
Msa1238070 MtrunA17_Chr3g0077581 31.412 347 209 11 14 342 32 367 7.25e-43 152
Msa1238070 MtrunA17_Chr5g0434621 30.000 340 211 10 3 328 12 338 1.14e-42 151
Msa1238070 MtrunA17_Chr5g0396511 29.080 337 218 9 19 342 48 376 1.36e-42 152
Msa1238070 MtrunA17_Chr2g0285061 28.488 344 226 7 1 332 16 351 1.47e-42 151
Msa1238070 MtrunA17_Chr4g0017431 28.657 335 211 9 17 338 31 350 2.54e-42 150
Msa1238070 MtrunA17_Chr2g0284951 33.429 347 198 13 13 345 28 355 8.93e-42 149
Msa1238070 MtrunA17_Chr3g0085231 31.287 342 194 10 17 342 31 347 3.55e-40 144
Msa1238070 MtrunA17_Chr8g0371481 29.375 320 207 9 17 324 41 353 5.52e-40 144
Msa1238070 MtrunA17_Chr7g0275291 29.532 342 206 9 17 332 33 365 5.52e-40 144
Msa1238070 MtrunA17_Chr1g0159971 32.164 342 193 11 17 329 47 378 3.51e-39 143
Msa1238070 MtrunA17_Chr5g0420811 30.267 337 213 11 13 342 29 350 3.60e-39 142
Msa1238070 MtrunA17_Chr3g0142921 30.794 315 194 10 17 317 36 340 3.76e-39 142
Msa1238070 MtrunA17_Chr2g0283531 30.704 355 208 14 12 342 26 366 8.83e-39 141
Msa1238070 MtrunA17_Chr8g0380031 33.030 330 189 11 13 329 79 389 1.63e-38 141
Msa1238070 MtrunA17_Chr1g0160031 31.343 335 203 9 17 329 39 368 1.82e-38 140
Msa1238070 MtrunA17_Chr8g0370951 29.513 349 213 12 17 344 31 367 1.87e-38 140
Msa1238070 MtrunA17_Chr1g0157001 28.739 341 214 11 22 342 41 372 2.79e-38 140
Msa1238070 MtrunA17_Chr8g0371471 29.467 319 207 9 17 324 41 352 3.90e-38 139
Msa1238070 MtrunA17_Chr5g0437421 27.554 323 209 9 17 322 32 346 3.98e-38 139
Msa1238070 MtrunA17_Chr2g0285001 30.571 350 210 12 13 345 28 361 8.97e-38 139
Msa1238070 MtrunA17_Chr1g0159981 31.212 330 198 9 17 322 46 370 4.42e-37 137
Msa1238070 MtrunA17_Chr8g0381581 30.029 343 202 10 17 329 40 374 8.33e-37 136
Msa1238070 MtrunA17_Chr1g0160011 31.098 328 199 9 17 322 40 362 1.11e-36 136
Msa1238070 MtrunA17_Chr3g0085881 32.754 345 188 12 18 344 34 352 1.15e-36 135
Msa1238070 MtrunA17_Chr3g0142941 32.308 325 195 12 8 320 42 353 1.96e-36 135
Msa1238070 MtrunA17_Chr7g0254461 29.651 344 209 9 17 332 43 381 6.10e-36 134
Msa1238070 MtrunA17_Chr2g0284991 31.322 348 209 13 13 345 28 360 9.70e-36 133
Msa1238070 MtrunA17_Chr7g0226931 26.146 371 223 7 12 342 33 392 2.58e-35 132
Msa1238070 MtrunA17_Chr4g0057991 27.492 331 219 8 18 332 40 365 2.92e-35 132
Msa1238070 MtrunA17_Chr2g0283501 29.651 344 211 12 17 339 31 364 4.85e-35 131
Msa1238070 MtrunA17_Chr1g0178931 29.618 314 195 10 18 322 38 334 5.36e-35 130
Msa1238070 MtrunA17_Chr1g0159991 30.523 344 208 10 17 336 36 372 7.53e-35 131
Msa1238070 MtrunA17_Chr2g0283481 30.857 350 210 14 17 342 47 388 2.56e-34 130
Msa1238070 MtrunA17_Chr7g0226911 27.841 352 212 9 17 338 35 374 4.55e-34 129
Msa1238070 MtrunA17_Chr8g0347751 28.940 349 201 9 18 332 37 372 5.14e-34 129
Msa1238070 MtrunA17_Chr8g0370961 30.085 236 154 4 111 342 14 242 1.74e-33 124
Msa1238070 MtrunA17_Chr6g0450701 28.824 340 214 8 14 332 36 368 3.19e-33 126
Msa1238070 MtrunA17_Chr2g0283511 30.523 344 205 12 22 342 36 368 3.46e-33 126
Msa1238070 MtrunA17_Chr7g0266061 31.661 319 183 13 18 322 43 340 3.63e-33 126
Msa1238070 MtrunA17_Chr6g0450711 29.706 340 205 9 17 332 122 451 4.65e-33 127
Msa1238070 MtrunA17_Chr2g0284921 29.769 346 206 10 17 344 34 360 1.30e-32 124
Msa1238070 MtrunA17_Chr7g0271551 30.091 329 204 11 10 324 30 346 1.82e-32 124
Msa1238070 MtrunA17_Chr2g0284941 30.460 348 191 14 13 345 28 339 5.33e-32 122
Msa1238070 MtrunA17_Chr6g0450731 29.882 338 196 12 17 332 33 351 7.86e-32 122
Msa1238070 MtrunA17_Chr2g0317261 29.395 347 206 13 12 336 25 354 8.35e-32 122
Msa1238070 MtrunA17_Chr1g0160101 28.743 334 202 8 17 322 42 367 9.16e-32 123
Msa1238070 MtrunA17_Chr3g0104821 29.661 354 211 15 11 336 40 383 1.27e-31 122
Msa1238070 MtrunA17_Chr7g0273101 29.834 362 210 15 2 332 16 364 2.49e-31 121
Msa1238070 MtrunA17_Chr2g0317271 29.395 347 206 13 12 336 25 354 2.60e-31 121
Msa1238070 MtrunA17_Chr1g0198351 29.073 313 193 9 16 318 42 335 6.43e-31 120
Msa1238070 MtrunA17_Chr7g0226941 28.402 338 212 7 17 329 33 365 7.06e-31 120
Msa1238070 MtrunA17_Chr0c01g0489581 29.107 347 207 13 12 336 25 354 1.30e-30 119
Msa1238070 MtrunA17_Chr6g0450721 30.030 333 196 10 17 330 33 347 1.95e-30 119
Msa1238070 MtrunA17_Chr0c01g0489571 29.107 347 207 13 12 336 25 354 3.49e-30 118
Msa1238070 MtrunA17_Chr8g0352901 28.863 343 209 10 17 332 28 362 1.32e-29 116
Msa1238070 MtrunA17_Chr3g0112821 28.940 349 215 12 11 342 26 358 1.68e-29 116
Msa1238070 MtrunA17_Chr1g0191461 29.360 344 210 10 17 334 31 367 2.26e-29 116
Msa1238070 MtrunA17_Chr1g0178941 29.102 323 193 13 18 322 41 345 3.87e-29 115
Msa1238070 MtrunA17_Chr1g0198381 28.963 328 205 10 16 333 1 310 4.80e-29 114
Msa1238070 MtrunA17_Chr2g0301581 29.042 334 195 11 17 329 34 346 4.29e-28 112
Msa1238070 MtrunA17_Chr4g0027571 29.954 217 139 5 117 326 3 213 6.96e-28 108
Msa1238070 MtrunA17_Chr1g0198391 27.168 346 197 11 16 328 32 355 2.00e-27 110
Msa1238070 MtrunA17_Chr3g0093031 28.814 354 214 14 11 342 26 363 2.83e-27 110
Msa1238070 MtrunA17_Chr3g0112691 29.738 343 205 14 11 330 26 355 2.90e-27 110
Msa1238070 MtrunA17_Chr3g0096551 29.296 355 205 14 11 330 25 368 4.36e-27 110
Msa1238070 MtrunA17_Chr2g0301541 28.443 334 197 11 17 329 34 346 1.96e-26 107
Msa1238070 MtrunA17_Chr6g0455661 26.400 250 165 6 103 342 229 469 5.47e-23 99.4
Msa1238070 MtrunA17_Chr6g0455661 50.000 96 46 1 17 112 31 124 3.17e-19 88.6
Msa1238070 MtrunA17_Chr6g0459921 26.639 244 160 7 109 342 124 358 1.15e-21 94.4
Msa1238070 MtrunA17_Chr8g0339251 28.028 289 182 8 17 291 28 304 6.82e-21 92.0
Msa1238070 MtrunA17_Chr7g0229581 30.921 152 98 3 183 333 8 153 3.30e-20 86.3
Msa1238070 MtrunA17_Chr2g0283541 26.453 344 163 12 12 342 26 292 8.21e-20 88.2
Msa1238070 MtrunA17_Chr7g0229591 40.000 145 78 6 17 155 30 171 1.66e-19 85.9
Msa1238070 MtrunA17_Chr2g0301591 28.077 260 168 6 17 267 34 283 2.56e-18 84.0
Msa1238070 MtrunA17_Chr4g0018571 28.767 146 99 2 177 322 25 165 3.04e-18 81.3
Msa1238070 MtrunA17_Chr6g0469521 30.882 136 89 2 173 308 22 152 4.25e-16 74.7
Msa1238070 MtrunA17_Chr5g0440501 21.702 235 163 6 106 328 7 232 5.37e-16 76.6
Msa1238070 MtrunA17_Chr1g0189921 42.276 123 60 5 17 131 31 150 8.97e-16 73.9
Msa1238070 MtrunA17_Chr1g0198401 23.897 272 181 9 70 329 8 265 1.02e-15 76.3
Msa1238070 MtrunA17_Chr3g0104801 39.062 128 64 6 11 128 40 163 1.86e-15 73.6
Msa1238070 MtrunA17_Chr1g0189911 28.788 132 89 1 212 343 18 144 5.79e-14 68.6
Msa1238070 MtrunA17_Chr2g0321991 41.837 98 51 4 12 105 28 123 1.05e-13 67.4
Msa1238070 MtrunA17_Chr4g0027561 46.667 90 40 5 17 101 30 116 2.06e-13 67.0
Msa1238070 MtrunA17_Chr2g0301551 24.296 284 177 10 67 329 36 302 4.01e-13 69.3
Msa1238070 MtrunA17_Chr8g0370971 44.231 104 48 4 13 108 34 135 6.47e-13 66.2
Msa1238070 MtrunA17_Chr1g0178961 23.529 187 135 4 137 318 18 201 6.69e-13 67.4
Msa1238070 MtrunA17_Chr2g0301571 25.352 284 174 11 67 329 36 302 7.22e-13 68.6
Msa1238070 MtrunA17_Chr6g0469511 39.130 115 63 4 17 126 30 142 1.07e-12 64.7
Msa1238070 MtrunA17_Chr7g0228261 36.047 86 50 1 258 343 10 90 1.11e-12 63.5
Msa1238070 MtrunA17_Chr2g0284931 24.096 249 142 9 109 344 5 219 7.35e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1238070 AT1G53920.1 51.775 338 153 5 16 344 47 383 1.69e-120 353
Msa1238070 AT5G40990.1 52.137 351 158 5 3 344 23 372 1.94e-117 344
Msa1238070 AT1G53940.2 49.563 343 163 5 11 344 33 374 3.14e-110 326
Msa1238070 AT3G14225.2 46.802 344 171 6 11 344 31 372 6.08e-104 310
Msa1238070 AT3G14225.1 46.552 348 170 7 11 344 31 376 6.33e-103 308
Msa1238070 AT1G53990.1 46.724 351 170 6 3 344 21 363 2.65e-99 298
Msa1238070 AT1G53940.1 50.000 268 125 4 11 270 33 299 1.63e-79 245
Msa1238070 AT5G15720.1 35.882 340 196 8 17 342 30 361 2.19e-59 195
Msa1238070 AT5G45960.1 37.975 316 172 10 17 316 47 354 2.89e-57 190
Msa1238070 AT1G71120.1 31.657 338 206 9 17 342 31 355 2.71e-56 187
Msa1238070 AT5G45950.1 33.544 316 188 10 17 322 40 343 7.62e-53 178
Msa1238070 AT3G04290.1 33.628 339 201 8 17 341 29 357 3.30e-52 177
Msa1238070 AT1G54030.1 31.420 331 200 9 18 343 53 361 4.07e-52 178
Msa1238070 AT5G41890.1 33.621 348 199 12 19 342 33 372 1.14e-51 176
Msa1238070 AT2G04570.1 33.731 335 202 9 2 324 13 339 1.98e-51 174
Msa1238070 AT4G26790.1 35.404 322 182 10 17 323 29 339 4.50e-51 173
Msa1238070 AT4G26790.2 35.404 322 182 10 17 323 29 339 4.50e-51 173
Msa1238070 AT5G33370.1 32.059 340 209 7 17 343 30 360 3.43e-50 171
Msa1238070 AT5G18430.1 33.623 345 201 10 14 341 25 358 4.23e-50 171
Msa1238070 AT4G28780.1 33.138 341 204 10 17 343 31 361 1.66e-49 170
Msa1238070 AT1G06990.1 32.308 325 189 10 17 323 37 348 1.14e-48 167
Msa1238070 AT3G16370.1 32.344 337 197 12 17 335 30 353 1.51e-48 167
Msa1238070 AT2G40250.1 32.407 324 197 9 17 325 36 352 1.89e-48 167
Msa1238070 AT1G71691.2 31.845 336 209 6 17 342 55 380 7.70e-48 166
Msa1238070 AT3G50400.1 31.429 350 212 12 13 342 30 371 1.24e-46 162
Msa1238070 AT5G03820.1 31.077 325 196 12 17 324 33 346 1.87e-46 161
Msa1238070 AT1G20120.1 32.915 319 196 9 17 324 78 389 3.44e-46 162
Msa1238070 AT4G18970.1 31.454 337 210 8 19 342 30 358 5.18e-46 160
Msa1238070 AT5G03820.2 31.579 323 197 11 17 324 61 374 6.20e-46 161
Msa1238070 AT1G20132.1 30.368 326 209 9 13 327 57 375 1.04e-45 160
Msa1238070 AT4G10950.2 28.947 342 222 9 17 345 71 404 1.40e-45 160
Msa1238070 AT2G23540.1 30.725 345 212 10 17 342 48 384 1.63e-45 160
Msa1238070 AT4G18970.2 31.454 337 210 8 19 342 30 358 1.73e-45 160
Msa1238070 AT1G75890.2 31.447 318 201 9 17 323 47 358 2.31e-45 159
Msa1238070 AT2G42990.1 31.307 329 206 9 17 333 28 348 3.07e-45 158
Msa1238070 AT3G14820.1 33.542 319 190 11 17 324 32 339 3.68e-45 158
Msa1238070 AT1G75890.3 31.447 318 201 9 17 323 76 387 5.03e-45 159
Msa1238070 AT5G45670.1 31.157 337 211 8 19 342 31 359 8.36e-45 157
Msa1238070 AT5G15720.2 37.218 266 150 7 17 268 30 292 1.30e-44 155
Msa1238070 AT5G03810.1 28.840 319 210 6 17 324 30 342 4.30e-44 155
Msa1238070 AT2G19010.1 30.362 359 210 12 2 345 15 348 6.56e-44 154
Msa1238070 AT1G59406.1 31.962 316 196 10 17 322 30 336 7.69e-44 154
Msa1238070 AT1G59030.1 31.962 316 196 10 17 322 30 336 7.69e-44 154
Msa1238070 AT1G58725.1 31.962 316 196 10 17 322 30 336 7.69e-44 154
Msa1238070 AT1G29660.1 31.193 327 202 9 19 332 34 350 1.07e-43 154
Msa1238070 AT2G19010.2 30.362 359 210 12 2 345 45 378 1.49e-43 154
Msa1238070 AT1G75890.1 30.211 331 201 9 17 323 47 371 1.75e-43 154
Msa1238070 AT3G14220.1 31.395 344 209 13 9 342 24 350 2.89e-43 153
Msa1238070 AT1G29670.1 31.098 328 202 9 18 332 33 349 3.49e-43 153
Msa1238070 AT5G37690.1 29.412 323 202 9 19 327 29 339 4.14e-43 152
Msa1238070 AT4G10950.1 28.655 342 219 10 17 345 71 400 4.85e-43 154
Msa1238070 AT5G08460.1 30.702 342 213 8 17 342 49 382 5.08e-43 153
Msa1238070 AT5G22810.1 31.077 325 197 12 17 324 34 348 5.63e-43 152
Msa1238070 AT1G20130.2 31.118 331 197 11 17 326 184 504 6.85e-43 155
Msa1238070 AT3G53100.1 30.000 320 202 9 17 323 29 339 8.30e-43 152
Msa1238070 AT1G20130.1 31.118 331 197 11 17 326 204 524 1.20e-42 155
Msa1238070 AT5G42170.1 30.341 323 206 10 8 322 45 356 1.22e-42 152
Msa1238070 AT1G58430.1 30.794 315 196 7 17 317 35 341 1.49e-42 151
Msa1238070 AT1G29670.2 31.875 320 194 9 18 324 101 409 1.66e-42 153
Msa1238070 AT1G58520.3 31.975 319 185 10 17 322 30 329 2.11e-42 150
Msa1238070 AT1G58525.1 31.975 319 185 10 17 322 30 329 2.11e-42 150
Msa1238070 AT2G30220.1 30.769 325 201 8 17 326 33 348 3.87e-42 150
Msa1238070 AT2G24560.1 30.183 328 199 10 17 326 34 349 4.31e-41 147
Msa1238070 AT1G75900.1 28.783 337 221 9 2 326 26 355 1.36e-40 146
Msa1238070 AT2G30310.1 29.814 322 208 7 17 326 34 349 1.80e-40 145
Msa1238070 AT5G15720.3 31.597 288 178 6 69 342 48 330 1.82e-40 145
Msa1238070 AT1G75880.1 30.368 326 206 9 11 322 44 362 2.15e-40 146
Msa1238070 AT1G28600.1 30.769 351 193 14 17 337 31 361 3.34e-40 146
Msa1238070 AT1G75880.2 30.154 325 207 9 11 322 44 361 6.03e-40 145
Msa1238070 AT1G74460.1 28.615 325 210 7 15 326 21 336 7.45e-40 144
Msa1238070 AT2G27360.1 32.194 351 205 14 17 342 33 375 7.98e-40 145
Msa1238070 AT5G63170.1 32.177 317 177 12 17 318 28 321 9.47e-40 143
Msa1238070 AT1G20135.1 30.312 320 187 10 17 322 29 326 9.74e-40 143
Msa1238070 AT2G19060.1 30.861 337 199 12 19 342 32 347 1.33e-39 143
Msa1238070 AT3G14210.1 30.117 342 204 13 16 342 35 356 3.18e-39 143
Msa1238070 AT5G55050.1 30.321 343 212 11 18 342 40 373 4.63e-39 142
Msa1238070 AT1G54000.1 30.383 339 205 13 16 342 35 354 7.38e-39 142
Msa1238070 AT1G71250.1 27.515 338 225 6 17 342 41 370 1.47e-38 141
Msa1238070 AT2G19050.1 30.088 339 197 13 19 342 33 346 1.91e-38 140
Msa1238070 AT5G37690.2 28.261 322 199 9 19 327 29 331 2.18e-38 140
Msa1238070 AT4G01130.1 29.825 342 209 8 17 332 34 370 2.29e-38 140
Msa1238070 AT1G54010.1 29.290 338 210 11 16 342 35 354 2.50e-38 140
Msa1238070 AT1G54020.2 27.684 354 226 12 1 343 13 347 3.27e-38 140
Msa1238070 AT2G31540.1 29.321 324 207 7 17 326 35 350 1.13e-37 138
Msa1238070 AT1G33811.1 29.745 353 221 11 9 342 23 367 2.10e-37 138
Msa1238070 AT1G28580.1 29.598 348 208 12 13 333 33 370 4.35e-37 137
Msa1238070 AT1G28650.1 30.330 333 209 9 17 329 37 366 7.08e-37 137
Msa1238070 AT1G75920.2 31.790 324 185 11 17 324 29 332 1.86e-36 135
Msa1238070 AT1G28590.1 29.972 357 210 14 17 345 36 380 2.36e-36 135
Msa1238070 AT1G28570.1 28.814 354 218 13 17 345 34 378 3.06e-36 135
Msa1238070 AT1G28640.1 30.117 342 198 12 17 329 35 364 4.87e-36 134
Msa1238070 AT3G48460.1 27.988 343 222 11 5 329 28 363 5.12e-36 134
Msa1238070 AT4G30140.1 28.529 333 208 8 19 342 35 346 5.34e-36 134
Msa1238070 AT1G75910.1 29.814 322 195 10 17 324 28 332 9.57e-36 133
Msa1238070 AT1G28610.2 29.661 354 203 13 17 342 31 366 1.57e-35 133
Msa1238070 AT1G31550.2 30.028 353 208 13 17 342 36 376 2.29e-35 133
Msa1238070 AT3G43550.1 31.868 273 163 9 8 268 25 286 3.01e-35 130
Msa1238070 AT1G54030.2 33.058 242 142 7 18 254 53 279 1.02e-34 129
Msa1238070 AT2G03980.2 30.154 325 198 13 17 328 43 351 1.06e-34 130
Msa1238070 AT2G03980.3 30.154 325 198 13 17 328 43 351 1.06e-34 130
Msa1238070 AT2G03980.1 30.154 325 198 13 17 328 43 351 1.06e-34 130
Msa1238070 AT2G03980.4 30.154 325 198 13 17 328 43 351 1.06e-34 130
Msa1238070 AT5G14450.1 28.655 342 206 9 17 329 41 373 1.11e-34 131
Msa1238070 AT1G23500.1 32.110 327 190 11 17 331 35 341 1.22e-34 130
Msa1238070 AT1G73610.1 30.530 321 186 11 17 323 35 332 9.15e-34 127
Msa1238070 AT3G43570.1 27.532 316 181 8 17 322 30 307 1.34e-33 126
Msa1238070 AT5G03610.1 30.031 323 198 10 12 322 38 344 1.72e-33 127
Msa1238070 AT3G26430.1 29.446 343 204 8 17 329 31 365 2.14e-33 127
Msa1238070 AT1G75920.1 30.357 336 189 11 17 324 24 342 3.69e-33 126
Msa1238070 AT1G71691.3 32.443 262 162 5 17 268 55 311 3.97e-33 125
Msa1238070 AT1G31550.1 29.545 352 208 14 17 342 36 373 1.29e-32 125
Msa1238070 AT1G54790.3 30.548 347 199 13 17 332 32 367 1.70e-32 125
Msa1238070 AT1G28660.1 29.080 337 210 9 16 329 34 364 5.01e-32 124
Msa1238070 AT3G05180.1 28.297 364 221 12 2 335 21 374 1.50e-31 122
Msa1238070 AT1G28670.1 29.341 334 212 9 17 329 35 365 1.54e-31 122
Msa1238070 AT2G19050.2 32.258 248 145 8 19 254 33 269 1.71e-31 120
Msa1238070 AT1G75930.1 30.218 321 194 11 17 324 29 332 1.85e-31 121
Msa1238070 AT1G71691.1 26.667 285 191 5 68 342 3 279 2.04e-31 120
Msa1238070 AT5G33370.2 30.566 265 167 6 17 268 30 290 2.35e-31 120
Msa1238070 AT5G45910.1 32.558 344 192 12 17 329 30 364 2.73e-31 121
Msa1238070 AT1G67830.1 29.129 333 204 10 17 322 30 357 2.90e-31 121
Msa1238070 AT1G28660.2 29.377 337 208 10 16 329 34 363 4.72e-31 121
Msa1238070 AT1G56670.1 28.834 326 208 10 18 328 41 357 4.54e-30 118
Msa1238070 AT3G09930.2 29.217 332 200 11 18 333 40 352 4.57e-30 118
Msa1238070 AT3G09930.1 29.217 332 200 11 18 333 40 352 4.57e-30 118
Msa1238070 AT1G09390.1 28.339 307 190 10 46 332 62 358 9.55e-30 117
Msa1238070 AT1G75920.4 29.934 304 179 10 37 324 19 304 8.47e-29 114
Msa1238070 AT1G75920.3 28.616 318 172 10 17 324 29 301 1.69e-28 112
Msa1238070 AT2G24560.2 28.938 273 169 9 17 271 34 299 1.44e-27 110
Msa1238070 AT5G03600.1 29.907 321 193 10 12 322 9 307 1.94e-27 110
Msa1238070 AT5G03600.2 29.907 321 193 10 12 322 44 342 2.97e-27 110
Msa1238070 AT3G62280.1 30.272 294 179 9 46 322 61 345 8.95e-27 109
Msa1238070 AT1G54790.1 28.986 345 200 14 24 332 31 366 1.02e-26 109
Msa1238070 AT4G01130.2 29.259 270 168 5 17 268 34 298 1.51e-26 108
Msa1238070 AT4G16230.1 32.857 210 123 8 9 203 21 227 3.22e-25 102
Msa1238070 AT2G04020.1 36.181 199 117 6 17 207 43 239 6.92e-25 102
Msa1238070 AT2G04020.2 30.031 323 159 13 17 328 43 309 7.30e-25 103
Msa1238070 AT1G53970.2 61.842 76 29 0 11 86 14 89 7.82e-25 97.1
Msa1238070 AT1G53970.1 61.842 76 29 0 11 86 14 89 7.82e-25 97.1
Msa1238070 AT3G27950.1 27.434 339 219 8 17 336 32 362 1.75e-24 103
Msa1238070 AT4G01130.3 26.761 284 182 7 75 332 1 284 3.93e-24 100
Msa1238070 AT1G28600.2 34.783 184 90 7 17 180 31 204 3.92e-22 93.6
Msa1238070 AT2G31550.1 25.592 211 141 3 119 322 4 205 4.70e-22 93.2
Msa1238070 AT2G36325.1 28.750 320 192 15 18 322 48 346 4.90e-22 95.9
Msa1238070 AT1G54790.2 27.493 371 198 16 24 332 31 392 1.08e-21 95.5
Msa1238070 AT1G56670.2 27.899 276 181 9 4 268 29 297 2.66e-21 92.8
Msa1238070 AT1G54020.1 23.897 272 184 8 78 343 7 261 1.56e-20 90.5
Msa1238070 AT1G54020.5 23.897 272 184 8 78 343 7 261 1.56e-20 90.5
Msa1238070 AT1G54020.3 23.897 272 184 8 78 343 7 261 1.56e-20 90.5
Msa1238070 AT3G62280.2 33.036 224 132 7 46 256 61 279 3.43e-20 89.7
Msa1238070 AT1G54020.4 25.359 209 144 5 141 343 10 212 4.31e-20 88.2
Msa1238070 AT1G28580.2 26.117 291 181 10 68 333 8 289 4.66e-20 89.7
Msa1238070 AT3G14210.2 24.896 241 158 8 112 342 1 228 1.65e-16 79.0
Msa1238070 AT4G16233.1 31.496 127 81 2 217 342 6 127 1.74e-16 75.5
Msa1238070 AT1G28610.1 33.696 184 92 8 17 180 31 204 1.07e-15 76.3
Msa1238070 AT1G28570.3 26.540 211 133 8 150 345 12 215 1.43e-15 75.5
Msa1238070 AT5G03980.1 26.190 252 161 10 93 326 66 310 4.42e-15 75.5
Msa1238070 AT1G28570.2 26.540 211 133 8 150 345 103 306 6.00e-15 75.1
Msa1238070 AT4G16220.1 45.455 99 47 5 9 103 21 116 2.95e-12 66.2

Find 68 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTTCCACTCCACATAAAT+TGG 0.117994 8_2:-17853223 None:intergenic
GAGATTGGAGGGAGGAAATT+TGG 0.128940 8_2:+17852228 Msa1238070:CDS
CAAGTTGCGTTGTTTGTATT+TGG 0.182203 8_2:+17850699 Msa1238070:CDS
ATAAGGAACCCTTCCAAATT+TGG 0.194977 8_2:+17852456 Msa1238070:CDS
AATAGATATGGTTGAATTAA+TGG 0.240239 8_2:-17851126 None:intergenic
ATGTCGTAACCTACCAAATT+TGG 0.250255 8_2:-17852469 None:intergenic
CAATACTACTGCTGATTATC+TGG 0.284780 8_2:+17850758 Msa1238070:CDS
AGATTGGAGGGAGGAAATTT+GGG 0.288893 8_2:+17852229 Msa1238070:CDS
ACCATCAAGGCATTTGTAAA+TGG 0.295353 8_2:+17852285 Msa1238070:CDS
TCCATTTACAAATGCCTTGA+TGG 0.302148 8_2:-17852286 None:intergenic
AACAACGCAACTTGTTCTTT+TGG 0.330256 8_2:-17850690 None:intergenic
AAAGTATTGAGGCAGAAATT+AGG 0.330525 8_2:+17851707 Msa1238070:CDS
ATTCAACCATATCTATTTCC+TGG 0.336634 8_2:+17851132 Msa1238070:CDS
ATCTATTTATTGAAGTCATA+AGG 0.388340 8_2:+17852439 Msa1238070:CDS
TTTCAGGGAATACATGAGAT+TGG 0.392735 8_2:+17852213 Msa1238070:intron
TTGAAGAAGGTTTCACCATA+TGG 0.403375 8_2:-17850792 None:intergenic
ATATTCTTACCTATGAAATC+TGG 0.406113 8_2:-17850852 None:intergenic
CTGTGGTAGTGGACCTTACA+AGG 0.416741 8_2:+17853082 Msa1238070:CDS
GTTGATTAAGTAGACAGCTT+TGG 0.416928 8_2:-17851756 None:intergenic
ATTTCCACTCCACATAAATT+GGG 0.417782 8_2:-17853222 None:intergenic
CGTGTCATTCCAGATTTCAT+AGG 0.463040 8_2:+17850843 Msa1238070:CDS
GGATTATTTCCCAATTTATG+TGG 0.464274 8_2:+17853213 Msa1238070:CDS
TTTACAAATGCCTTGATGGT+TGG 0.467592 8_2:-17852282 None:intergenic
GCCATTCATCCTACTGAAAG+TGG 0.478067 8_2:+17853185 Msa1238070:CDS
ACCTTCTTCAAGTATCCATC+TGG 0.479315 8_2:+17850804 Msa1238070:CDS
TGAGAACCAGGAAATAGATA+TGG 0.483185 8_2:-17851138 None:intergenic
GGAGTAGCATGCTGTGGTAG+TGG 0.486878 8_2:+17853071 Msa1238070:CDS
CAACTGTAATATCCCTTGTA+AGG 0.490108 8_2:-17853095 None:intergenic
TGATGAAAAGGTTTGAAAGA+AGG 0.492946 8_2:+17853047 Msa1238070:intron
CTGGCAAATTACCCACCATA+TGG 0.493318 8_2:+17850777 Msa1238070:CDS
ATCCTACTGAAAGTGGTAGT+AGG 0.503174 8_2:+17853192 Msa1238070:CDS
GGAGATTCATTATTTGATGT+CGG 0.507507 8_2:+17850720 Msa1238070:CDS
GGTTCTCAACTATATATCAA+TGG 0.507572 8_2:+17851153 Msa1238070:CDS
TGAAGAAACCACAACTCTGC+TGG 0.512505 8_2:+17851733 Msa1238070:CDS
ATTTCCCAATTTATGTGGAG+TGG 0.520045 8_2:+17853218 Msa1238070:CDS
GCTGTCTACTTAATCAACAT+TGG 0.524453 8_2:+17851761 Msa1238070:CDS
ACCACTTTCAGTAGGATGAA+TGG 0.524662 8_2:-17853186 None:intergenic
AGCTTTGGCCAGCAGAGTTG+TGG 0.531588 8_2:-17851741 None:intergenic
ATTCTTAACACACCATCACT+TGG 0.539789 8_2:+17852252 Msa1238070:CDS
TACAAGGGATATTACAGTTG+TGG 0.540378 8_2:+17853098 Msa1238070:CDS
CAGGGAATACATGAGATTGG+AGG 0.540491 8_2:+17852216 Msa1238070:intron
ACCAGATGGATACTTGAAGA+AGG 0.545031 8_2:-17850805 None:intergenic
TGAAAAGGTTTGAAAGAAGG+AGG 0.555812 8_2:+17853050 Msa1238070:intron
CGTAACCTACCAAATTTGGA+AGG 0.560332 8_2:-17852465 None:intergenic
AGGGAATACATGAGATTGGA+GGG 0.573956 8_2:+17852217 Msa1238070:intron
AAACATATGTTACCAAGTGT+TGG 0.574366 8_2:-17850666 None:intergenic
GGAATGCTAATTCCAACACT+TGG 0.575060 8_2:+17850654 None:intergenic
AAGAAGGTTTCACCATATGG+TGG 0.576872 8_2:-17850789 None:intergenic
AGTAGAAACTCATCAAGGAC+TGG 0.581951 8_2:+17851209 Msa1238070:CDS
GTCTACTTAATCAACATTGG+AGG 0.584111 8_2:+17851764 Msa1238070:CDS
TCAAAGAACAAATATTCAGA+AGG 0.585115 8_2:-17853161 None:intergenic
TTGATATATAGTTGAGAACC+AGG 0.593545 8_2:-17851150 None:intergenic
AGTGGAAATAAGAGTATCAC+CGG 0.594030 8_2:+17853236 Msa1238070:CDS
TAGTTTAGTGTTGTGCACTT+TGG 0.595776 8_2:-17852349 None:intergenic
AAATACGTATCAATGGTTGT+TGG 0.595900 8_2:+17851830 Msa1238070:CDS
CCATCAGAAAATCTACCAGA+TGG 0.603978 8_2:-17850819 None:intergenic
AGAAGGTTTCACCATATGGT+GGG 0.608192 8_2:-17850788 None:intergenic
AAGGGATATTACAGTTGTGG+AGG 0.618906 8_2:+17853101 Msa1238070:CDS
AGAATGTCAAGAAAGTATTG+AGG 0.633947 8_2:+17851696 Msa1238070:CDS
GAAGGAGGAGTAGCATGCTG+TGG 0.634403 8_2:+17853065 Msa1238070:CDS
AATTTAACGAAACAGATCAA+AGG 0.635768 8_2:+17852387 Msa1238070:CDS
ATCCTACTACCACTTTCAGT+AGG 0.638183 8_2:-17853194 None:intergenic
GTAACCTACCAAATTTGGAA+GGG 0.642469 8_2:-17852464 None:intergenic
GTAAGAGATTATGACTTGTG+TGG 0.643556 8_2:+17853134 Msa1238070:CDS
GCTTTAGTAGAAACTCATCA+AGG 0.663302 8_2:+17851204 Msa1238070:CDS
GTTGGAAAACAACCAAGTGA+TGG 0.678111 8_2:-17852264 None:intergenic
TGTGGTAGTGGACCTTACAA+GGG 0.691944 8_2:+17853083 Msa1238070:CDS
GAATACATGAGATTGGAGGG+AGG 0.702913 8_2:+17852220 Msa1238070:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTGTTTTGATAAATTATTA+TGG - chr8_2:17850943-17850962 None:intergenic 15.0%
!! TTACGATAAAAGTTAAAATT+AGG - chr8_2:17851039-17851058 None:intergenic 15.0%
!!! TTAATTTTTTAGCTTAATTG+CGG + chr8_2:17851277-17851296 Msa1238070:intron 15.0%
!!! GATATTAGTTTTCAATATAA+TGG + chr8_2:17852944-17852963 Msa1238070:intron 15.0%
!!! TTATCTAATTCTAAAATTTG+TGG + chr8_2:17853014-17853033 Msa1238070:intron 15.0%
!!! TTTTATTTTCATCACTCAAA+CGG - chr8_2:17850896-17850915 None:intergenic 20.0%
!! AATAGATATGGTTGAATTAA+TGG - chr8_2:17851129-17851148 None:intergenic 20.0%
!!! TTTACTTGTCTAGATTTTTT+TGG + chr8_2:17851315-17851334 Msa1238070:intron 20.0%
!!! ATTTTTGGTTTTAGAAATCT+TGG - chr8_2:17851348-17851367 None:intergenic 20.0%
!! TATAGTATTTCAATACAATC+TGG - chr8_2:17851434-17851453 None:intergenic 20.0%
!! GTCAAAAAAAAAAAATTGAG+AGG - chr8_2:17851465-17851484 None:intergenic 20.0%
!! TTGACATGTCAATAAAAAAT+TGG + chr8_2:17851480-17851499 Msa1238070:intron 20.0%
!! GAAAATATATAAACACCATA+TGG - chr8_2:17851640-17851659 None:intergenic 20.0%
!!! TATGGTGTTTATATATTTTC+AGG + chr8_2:17851640-17851659 Msa1238070:intron 20.0%
!!! TTTGGATTGACTTATTTAAA+CGG + chr8_2:17851943-17851962 Msa1238070:intron 20.0%
!! ATTAAAAATAAGTAGATACG+AGG - chr8_2:17852027-17852046 None:intergenic 20.0%
!! TACATAAACACTTGTATAAT+AGG + chr8_2:17852099-17852118 Msa1238070:intron 20.0%
!! ATTTGAATAGTAGAAGATTT+AGG - chr8_2:17852161-17852180 None:intergenic 20.0%
!!! TCATTCCAATATTTAATTTC+AGG + chr8_2:17852197-17852216 Msa1238070:intron 20.0%
!!! CATTCCAATATTTAATTTCA+GGG + chr8_2:17852198-17852217 Msa1238070:intron 20.0%
!! TATTCCCTGAAATTAAATAT+TGG - chr8_2:17852205-17852224 None:intergenic 20.0%
!! ATCTATTTATTGAAGTCATA+AGG + chr8_2:17852439-17852458 Msa1238070:CDS 20.0%
!! ATATTCGACAAAATTATTGA+AGG - chr8_2:17852541-17852560 None:intergenic 20.0%
!!! TTTGAAGTCATTGATTTAAT+TGG - chr8_2:17852630-17852649 None:intergenic 20.0%
!! TGTTATGGTGTAAAAATATA+CGG - chr8_2:17852784-17852803 None:intergenic 20.0%
!! TTGATACATTAAATGTGTTA+TGG - chr8_2:17852799-17852818 None:intergenic 20.0%
!! AATTTCACAATACAAATTTG+CGG - chr8_2:17852851-17852870 None:intergenic 20.0%
!! TTAGAATATAACCTATTTGA+TGG - chr8_2:17852880-17852899 None:intergenic 20.0%
! ATATTCTTACCTATGAAATC+TGG - chr8_2:17850855-17850874 None:intergenic 25.0%
!! CCAATTTTTGCTTACATTTT+GGG - chr8_2:17850988-17851007 None:intergenic 25.0%
!! ACCAATTTTTGCTTACATTT+TGG - chr8_2:17850989-17851008 None:intergenic 25.0%
! ATCATGATCAGATTGTTAAT+TGG - chr8_2:17851076-17851095 None:intergenic 25.0%
!!! CAATGTTACTTCATCATTTT+TGG - chr8_2:17851363-17851382 None:intergenic 25.0%
!! TGATGAAGTAACATTGTTTT+TGG + chr8_2:17851367-17851386 Msa1238070:intron 25.0%
! TGTCAAATAACTAAACAACT+CGG - chr8_2:17851533-17851552 None:intergenic 25.0%
! TCATGAAAAATACGTATCAA+TGG + chr8_2:17851823-17851842 Msa1238070:CDS 25.0%
! ACTACGATATTAGAAAATAC+AGG - chr8_2:17851899-17851918 None:intergenic 25.0%
!! TTCTAATATCGTAGTTCTTT+TGG + chr8_2:17851904-17851923 Msa1238070:intron 25.0%
! GGTTATGATTAAAACATGTT+TGG + chr8_2:17851925-17851944 Msa1238070:intron 25.0%
! AATTTAACGAAACAGATCAA+AGG + chr8_2:17852387-17852406 Msa1238070:CDS 25.0%
! TAATGTATCAACCTAAACAT+TGG + chr8_2:17852808-17852827 Msa1238070:intron 25.0%
! AATGTATCAACCTAAACATT+GGG + chr8_2:17852809-17852828 Msa1238070:intron 25.0%
! ATTTCACAATACAAATTTGC+GGG - chr8_2:17852850-17852869 None:intergenic 25.0%
!! AAATTGACTTACCATCAAAT+AGG + chr8_2:17852866-17852885 Msa1238070:intron 25.0%
! TCAAAGAACAAATATTCAGA+AGG - chr8_2:17853164-17853183 None:intergenic 25.0%
AAACATATGTTACCAAGTGT+TGG - chr8_2:17850669-17850688 None:intergenic 30.0%
GGAGATTCATTATTTGATGT+CGG + chr8_2:17850720-17850739 Msa1238070:CDS 30.0%
!! TTTTTGCTTACATTTTGGGA+CGG - chr8_2:17850984-17851003 None:intergenic 30.0%
CCCAAAATGTAAGCAAAAAT+TGG + chr8_2:17850985-17851004 Msa1238070:intron 30.0%
ATTCAACCATATCTATTTCC+TGG + chr8_2:17851132-17851151 Msa1238070:CDS 30.0%
TTGATATATAGTTGAGAACC+AGG - chr8_2:17851153-17851172 None:intergenic 30.0%
GGTTCTCAACTATATATCAA+TGG + chr8_2:17851153-17851172 Msa1238070:CDS 30.0%
!!! TGAAGTAACATTGTTTTTGG+CGG + chr8_2:17851370-17851389 Msa1238070:intron 30.0%
! AACTAAACAACTCGGATTTT+TGG - chr8_2:17851525-17851544 None:intergenic 30.0%
ATAAGAGAGATTTGACCATA+TGG + chr8_2:17851622-17851641 Msa1238070:intron 30.0%
!! AGAATGTCAAGAAAGTATTG+AGG + chr8_2:17851696-17851715 Msa1238070:CDS 30.0%
!! AAAGTATTGAGGCAGAAATT+AGG + chr8_2:17851707-17851726 Msa1238070:CDS 30.0%
AAATACGTATCAATGGTTGT+TGG + chr8_2:17851830-17851849 Msa1238070:CDS 30.0%
GACTTATTTAAACGGTTGTT+AGG + chr8_2:17851951-17851970 Msa1238070:intron 30.0%
!! GGCTTAATTTGATGATGAAA+AGG + chr8_2:17853035-17853054 Msa1238070:intron 30.0%
TGATGAAAAGGTTTGAAAGA+AGG + chr8_2:17853047-17853066 Msa1238070:intron 30.0%
GGATTATTTCCCAATTTATG+TGG + chr8_2:17853213-17853232 Msa1238070:CDS 30.0%
ATTTCCACTCCACATAAATT+GGG - chr8_2:17853225-17853244 None:intergenic 30.0%
TATTTCCACTCCACATAAAT+TGG - chr8_2:17853226-17853245 None:intergenic 30.0%
!!! ACAGAGTTTTGAGATTGTAA+GGG - chr8_2:17853262-17853281 None:intergenic 30.0%
!!! AACAGAGTTTTGAGATTGTA+AGG - chr8_2:17853263-17853282 None:intergenic 30.0%
!! AACAACGCAACTTGTTCTTT+TGG - chr8_2:17850693-17850712 None:intergenic 35.0%
CAAGTTGCGTTGTTTGTATT+TGG + chr8_2:17850699-17850718 Msa1238070:CDS 35.0%
! CAATACTACTGCTGATTATC+TGG + chr8_2:17850758-17850777 Msa1238070:CDS 35.0%
TTGAAGAAGGTTTCACCATA+TGG - chr8_2:17850795-17850814 None:intergenic 35.0%
TGAGAACCAGGAAATAGATA+TGG - chr8_2:17851141-17851160 None:intergenic 35.0%
GCTTTAGTAGAAACTCATCA+AGG + chr8_2:17851204-17851223 Msa1238070:CDS 35.0%
TCTAGACAAGTAAAAACACG+AGG - chr8_2:17851309-17851328 None:intergenic 35.0%
CTCAAAACTAGCTGATAAAG+AGG - chr8_2:17851396-17851415 None:intergenic 35.0%
!!! CTCTTTATCAGCTAGTTTTG+AGG + chr8_2:17851394-17851413 Msa1238070:intron 35.0%
GTTGATTAAGTAGACAGCTT+TGG - chr8_2:17851759-17851778 None:intergenic 35.0%
GCTGTCTACTTAATCAACAT+TGG + chr8_2:17851761-17851780 Msa1238070:CDS 35.0%
GTCTACTTAATCAACATTGG+AGG + chr8_2:17851764-17851783 Msa1238070:CDS 35.0%
TTTCAGGGAATACATGAGAT+TGG + chr8_2:17852213-17852232 Msa1238070:intron 35.0%
ATTCTTAACACACCATCACT+TGG + chr8_2:17852252-17852271 Msa1238070:CDS 35.0%
! TTTACAAATGCCTTGATGGT+TGG - chr8_2:17852285-17852304 None:intergenic 35.0%
! ACCATCAAGGCATTTGTAAA+TGG + chr8_2:17852285-17852304 Msa1238070:CDS 35.0%
TCCATTTACAAATGCCTTGA+TGG - chr8_2:17852289-17852308 None:intergenic 35.0%
TAGTTTAGTGTTGTGCACTT+TGG - chr8_2:17852352-17852371 None:intergenic 35.0%
ATAAGGAACCCTTCCAAATT+TGG + chr8_2:17852456-17852475 Msa1238070:CDS 35.0%
GTAACCTACCAAATTTGGAA+GGG - chr8_2:17852467-17852486 None:intergenic 35.0%
ATGTCGTAACCTACCAAATT+TGG - chr8_2:17852472-17852491 None:intergenic 35.0%
GAAGGAATAACCCAATGTTT+AGG - chr8_2:17852822-17852841 None:intergenic 35.0%
TGAAAAGGTTTGAAAGAAGG+AGG + chr8_2:17853050-17853069 Msa1238070:intron 35.0%
CAACTGTAATATCCCTTGTA+AGG - chr8_2:17853098-17853117 None:intergenic 35.0%
TACAAGGGATATTACAGTTG+TGG + chr8_2:17853098-17853117 Msa1238070:CDS 35.0%
! GTAAGAGATTATGACTTGTG+TGG + chr8_2:17853134-17853153 Msa1238070:CDS 35.0%
ATTTCCCAATTTATGTGGAG+TGG + chr8_2:17853218-17853237 Msa1238070:CDS 35.0%
!! AGTGGAAATAAGAGTATCAC+CGG + chr8_2:17853236-17853255 Msa1238070:CDS 35.0%
AGAAGGTTTCACCATATGGT+GGG - chr8_2:17850791-17850810 None:intergenic 40.0%
AAGAAGGTTTCACCATATGG+TGG - chr8_2:17850792-17850811 None:intergenic 40.0%
ACCTTCTTCAAGTATCCATC+TGG + chr8_2:17850804-17850823 Msa1238070:CDS 40.0%
ACCAGATGGATACTTGAAGA+AGG - chr8_2:17850808-17850827 None:intergenic 40.0%
CCATCAGAAAATCTACCAGA+TGG - chr8_2:17850822-17850841 None:intergenic 40.0%
! CCATCTGGTAGATTTTCTGA+TGG + chr8_2:17850819-17850838 Msa1238070:CDS 40.0%
! CGTGTCATTCCAGATTTCAT+AGG + chr8_2:17850843-17850862 Msa1238070:CDS 40.0%
AGTAGAAACTCATCAAGGAC+TGG + chr8_2:17851209-17851228 Msa1238070:CDS 40.0%
TACAATCTGGTATTGCAACC+AGG - chr8_2:17851421-17851440 None:intergenic 40.0%
AGGGAATACATGAGATTGGA+GGG + chr8_2:17852217-17852236 Msa1238070:intron 40.0%
AGATTGGAGGGAGGAAATTT+GGG + chr8_2:17852229-17852248 Msa1238070:CDS 40.0%
GTTGGAAAACAACCAAGTGA+TGG - chr8_2:17852267-17852286 None:intergenic 40.0%
!! TGGTTGTTTTCCAACCATCA+AGG + chr8_2:17852272-17852291 Msa1238070:CDS 40.0%
CGTAACCTACCAAATTTGGA+AGG - chr8_2:17852468-17852487 None:intergenic 40.0%
CAATACAAATTTGCGGGTCA+CGG - chr8_2:17852844-17852863 None:intergenic 40.0%
AAGGGATATTACAGTTGTGG+AGG + chr8_2:17853101-17853120 Msa1238070:CDS 40.0%
ACCACTTTCAGTAGGATGAA+TGG - chr8_2:17853189-17853208 None:intergenic 40.0%
ATCCTACTGAAAGTGGTAGT+AGG + chr8_2:17853192-17853211 Msa1238070:CDS 40.0%
ATCCTACTACCACTTTCAGT+AGG - chr8_2:17853197-17853216 None:intergenic 40.0%
!!! AGTTTTGAGATTGTAAGGGC+CGG - chr8_2:17853258-17853277 None:intergenic 40.0%
CTGGCAAATTACCCACCATA+TGG + chr8_2:17850777-17850796 Msa1238070:CDS 45.0%
!!! TGCTTACATTTTGGGACGGA+GGG - chr8_2:17850980-17850999 None:intergenic 45.0%
!!! TTGCTTACATTTTGGGACGG+AGG - chr8_2:17850981-17851000 None:intergenic 45.0%
! GGAGTCAATTTTGCATCAGC+TGG + chr8_2:17851174-17851193 Msa1238070:CDS 45.0%
! AATTTTGCATCAGCTGGAGC+TGG + chr8_2:17851180-17851199 Msa1238070:CDS 45.0%
! ATTTTGCATCAGCTGGAGCT+GGG + chr8_2:17851181-17851200 Msa1238070:CDS 45.0%
!!! ATCAGCTAGTTTTGAGGTCC+TGG + chr8_2:17851400-17851419 Msa1238070:intron 45.0%
TGAAGAAACCACAACTCTGC+TGG + chr8_2:17851733-17851752 Msa1238070:CDS 45.0%
CAGGGAATACATGAGATTGG+AGG + chr8_2:17852216-17852235 Msa1238070:intron 45.0%
GAATACATGAGATTGGAGGG+AGG + chr8_2:17852220-17852239 Msa1238070:CDS 45.0%
GAGATTGGAGGGAGGAAATT+TGG + chr8_2:17852228-17852247 Msa1238070:CDS 45.0%
GGAACCCTTCCAAATTTGGT+AGG + chr8_2:17852460-17852479 Msa1238070:intron 45.0%
!! TGTGGTAGTGGACCTTACAA+GGG + chr8_2:17853083-17853102 Msa1238070:CDS 45.0%
GCCATTCATCCTACTGAAAG+TGG + chr8_2:17853185-17853204 Msa1238070:CDS 45.0%
! TTTTGCATCAGCTGGAGCTG+GGG + chr8_2:17851182-17851201 Msa1238070:CDS 50.0%
ACAAATTTGCGGGTCACGGA+AGG - chr8_2:17852840-17852859 None:intergenic 50.0%
!! CTGTGGTAGTGGACCTTACA+AGG + chr8_2:17853082-17853101 Msa1238070:CDS 50.0%
! AGCTTTGGCCAGCAGAGTTG+TGG - chr8_2:17851744-17851763 None:intergenic 55.0%
GAAGGAGGAGTAGCATGCTG+TGG + chr8_2:17853065-17853084 Msa1238070:CDS 55.0%
GGAGTAGCATGCTGTGGTAG+TGG + chr8_2:17853071-17853090 Msa1238070:CDS 55.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 17850657 17853292 17850657 ID=Msa1238070;Name=Msa1238070
chr8_2 mRNA 17850657 17853292 17850657 ID=Msa1238070-mRNA-1;Parent=Msa1238070;Name=Msa1238070-mRNA-1;_AED=0.05;_eAED=0.06;_QI=0|0|0|1|1|1|5|0|345
chr8_2 exon 17850657 17850864 17850657 ID=Msa1238070-mRNA-1:exon:6789;Parent=Msa1238070-mRNA-1
chr8_2 exon 17851109 17851230 17851109 ID=Msa1238070-mRNA-1:exon:6790;Parent=Msa1238070-mRNA-1
chr8_2 exon 17851662 17851874 17851662 ID=Msa1238070-mRNA-1:exon:6791;Parent=Msa1238070-mRNA-1
chr8_2 exon 17852219 17852477 17852219 ID=Msa1238070-mRNA-1:exon:6792;Parent=Msa1238070-mRNA-1
chr8_2 exon 17853057 17853292 17853057 ID=Msa1238070-mRNA-1:exon:6793;Parent=Msa1238070-mRNA-1
chr8_2 CDS 17850657 17850864 17850657 ID=Msa1238070-mRNA-1:cds;Parent=Msa1238070-mRNA-1
chr8_2 CDS 17851109 17851230 17851109 ID=Msa1238070-mRNA-1:cds;Parent=Msa1238070-mRNA-1
chr8_2 CDS 17851662 17851874 17851662 ID=Msa1238070-mRNA-1:cds;Parent=Msa1238070-mRNA-1
chr8_2 CDS 17852219 17852477 17852219 ID=Msa1238070-mRNA-1:cds;Parent=Msa1238070-mRNA-1
chr8_2 CDS 17853057 17853292 17853057 ID=Msa1238070-mRNA-1:cds;Parent=Msa1238070-mRNA-1
Gene Sequence

>Msa1238070

ATGCTAATTCCAACACTTGGTAACATATGTTTGCCAAAAGAACAAGTTGCGTTGTTTGTATTTGGAGATTCATTATTTGATGTCGGAAACAATAATTATATCAATACTACTGCTGATTATCTGGCAAATTACCCACCATATGGTGAAACCTTCTTCAAGTATCCATCTGGTAGATTTTCTGATGGACGTGTCATTCCAGATTTCATAGCTGAGTATGCTAAGTTACCATTAATTCAACCATATCTATTTCCTGGTTCTCAACTATATATCAATGGAGTCAATTTTGCATCAGCTGGAGCTGGGGCTTTAGTAGAAACTCATCAAGGACTGGTGATAGATCTAAAGACACAATTGAGTTATCTGAAGAATGTCAAGAAAGTATTGAGGCAGAAATTAGGAGATGAAGAAACCACAACTCTGCTGGCCAAAGCTGTCTACTTAATCAACATTGGAGGCAATGATTATTTTGTAGAAAATTCGAGCTTATACACTCATGAAAAATACGTATCAATGGTTGTTGGTAATCTTACAACTGTGATCAAAGGAATACATGAGATTGGAGGGAGGAAATTTGGGATTCTTAACACACCATCACTTGGTTGTTTTCCAACCATCAAGGCATTTGTAAATGGAACTAAATCAAGTTCTTGCATTGAAGAGTATTCAACACTTGCCAAAGTGCACAACACTAAACTATCAGTGAAACTTCAGAATTTAACGAAACAGATCAAAGGATTTAAATATTCTTATTTTGATTTCTTTGATCTATTTATTGAAGTCATAAGGAACCCTTCCAAATTTGGTTTGAAAGAAGGAGGAGTAGCATGCTGTGGTAGTGGACCTTACAAGGGATATTACAGTTGTGGAGGTAAAAGAGAAGTAAGAGATTATGACTTGTGTGGTAATCCTTCTGAATATTTGTTCTTTGATGCCATTCATCCTACTGAAAGTGGTAGTAGGATTATTTCCCAATTTATGTGGAGTGGAAATAAGAGTATCACCGGCCCTTACAATCTCAAAACTCTGTTTGAAGAATAA
Protein sequence

>Msa1238070

MLIPTLGNICLPKEQVALFVFGDSLFDVGNNNYINTTADYLANYPPYGETFFKYPSGRFSDGRVIPDFIAEYAKLPLIQPYLFPGSQLYINGVNFASAGAGALVETHQGLVIDLKTQLSYLKNVKKVLRQKLGDEETTTLLAKAVYLINIGGNDYFVENSSLYTHEKYVSMVVGNLTTVIKGIHEIGGRKFGILNTPSLGCFPTIKAFVNGTKSSSCIEEYSTLAKVHNTKLSVKLQNLTKQIKGFKYSYFDFFDLFIEVIRNPSKFGLKEGGVACCGSGPYKGYYSCGGKREVRDYDLCGNPSEYLFFDAIHPTESGSRIISQFMWSGNKSITGPYNLKTLFEE*